Citrus Sinensis ID: 000511
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1455 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKX0 | 1410 | ABC transporter C family | yes | no | 0.950 | 0.980 | 0.650 | 0.0 | |
| Q5T3U5 | 1492 | Multidrug resistance-asso | yes | no | 0.837 | 0.817 | 0.392 | 0.0 | |
| Q8R4P9 | 1501 | Multidrug resistance-asso | yes | no | 0.864 | 0.838 | 0.377 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | no | no | 0.780 | 0.737 | 0.362 | 0.0 | |
| B2RX12 | 1523 | Canalicular multispecific | no | no | 0.792 | 0.757 | 0.352 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | no | no | 0.775 | 0.730 | 0.365 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | no | no | 0.799 | 0.761 | 0.351 | 0.0 | |
| O15438 | 1527 | Canalicular multispecific | no | no | 0.793 | 0.755 | 0.353 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.802 | 0.765 | 0.351 | 0.0 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | no | no | 0.802 | 0.761 | 0.353 | 0.0 |
| >sp|Q9SKX0|AB13C_ARATH ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1838 bits (4761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 940/1444 (65%), Positives = 1133/1444 (78%), Gaps = 61/1444 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDC-----NTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 252
+ S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 253 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 312
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 313 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 372
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 373 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 432
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 433 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 492
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 493 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 552
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 553 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 612
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 613 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 672
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 673 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 792
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 793 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 850
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 851 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 910
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 911 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 971 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1030
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1031 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1090
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1091 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1150
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1151 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1210
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1331 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1449
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSF
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSF 1405
Query: 1450 VRAS 1453
VRAS
Sbjct: 1406 VRAS 1409
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Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q5T3U5|MRP7_HUMAN Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1 | Back alignment and function description |
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Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/1316 (39%), Positives = 739/1316 (56%), Gaps = 97/1316 (7%)
Query: 178 ASSRRSSIEESLLSVDGDVEEDCNTDSSYW-DLMAFKSIDSVMNRGVIKQL-DFEDLLGL 235
R +E LL D E + D W ++ + ++ RG +L +D+ L
Sbjct: 193 GGPREPWAQEPLLPED--QEPEVAEDGESWLSRFSYAWLAPLLARGACGELRQPQDICRL 250
Query: 236 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 295
P + P+ + WQ L RA+ A+G Y+ LGLLK+V +GF+GP
Sbjct: 251 PHRLQPTYLARVFQAHWQ-------EGARLWRALYGAFGRCYLALGLLKLVGTMLGFSGP 303
Query: 296 LLLNKLIKFLQQGSGHLD-GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 354
LLL+ L+ FL++G L G + A+ L ++L + QY + + K+ L+ R +++ I+
Sbjct: 304 LLLSLLVGFLEEGQEPLSHGLLYALGLAGGAVLGAVLQNQYGYEVYKVTLQARGAVLNIL 363
Query: 355 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVK 414
Y K L + S GE + D++R +N A SFH+AW LP Q+ + LYLLY QV
Sbjct: 364 YCKALQL---GPSRPPTGEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVG 420
Query: 415 FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQI 474
AFV GL + +LL+PVNK IA I + ++M++ KD R++ E+L+ IR +K GWEQ
Sbjct: 421 VAFVGGLILALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTELLSGIRVIKFCGWEQA 480
Query: 475 FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTC 534
+ + R+ E+ L KYLDA CV+ WA P + S+ F + LMGHQL A VFT
Sbjct: 481 LGARVEACRARELGRLRVIKYLDAACVYLWAALPVVISIVIFITYVLMGHQLTATKVFTA 540
Query: 535 LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 594
LAL LI PLN+FPWVINGL++A +S+ R+ FL + + + + P+ S L
Sbjct: 541 LALVRMLILPLNNFPWVINGLLEAKVSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTVLE- 599
Query: 595 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 654
+ A SW + + + L + KG LV ++G+VG GKSSLL +I
Sbjct: 600 ---------LHGALFSWDPVGTSLETFISH---LEVKKGMLVGIVGKVGCGKSSLLAAIA 647
Query: 655 GEMMLTHGSIHASG---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 711
GE+ G + G Q PWI TIRDNILFGK +D Q Y E L+AC L+ D
Sbjct: 648 GELHRLRGHVAVRGLSKGFGLATQEPWIQFATIRDNILFGKTFDAQLYKEVLEACALNDD 707
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+S++ GD +GEKGV LSGGQRAR+ALARAVY ++Y+LDD L+AVDA VA +L
Sbjct: 708 LSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHLLHR 767
Query: 772 AIMGPHMLQ-KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTN 828
I+G ML TR+LCTH + + AD V++M+ G++ G +++ V W+ N
Sbjct: 768 CILG--MLSYTTRLLCTHRTEYLERADAVLLMEAGRLIRAGPPSEILPLVQAVPKAWAEN 825
Query: 829 --EFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYK 886
E D++ Q K+ L +E+ + +++ E +KEG V L VY+
Sbjct: 826 GQESDSATAQSVQN-----PEKTKEGLEEEQST------SGRLLQEESKKEGAVALHVYQ 874
Query: 887 NYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT----TGSSQTKYSTS------- 935
Y K G + L I S +LMQA+RN D WLS+W+ S + + STS
Sbjct: 875 AYWKAVGQGLALAILFSLLLMQATRNAADWWLSHWISQLKAENSSQEAQPSTSPASMGLF 934
Query: 936 -------------------------------FYLVVLCIFCMFNSFLTLVRAFSFAFGSL 964
FYL V NS TL+RA FA G+L
Sbjct: 935 SPQLLLFSPGNLYIPVFPLPKAAPNGSSDIRFYLTVYATIAGVNSLCTLLRAVLFAAGTL 994
Query: 965 RAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLL 1024
+AA +H LL +++ APV FF+ TP GRILNRFSSD+ DDSLPFILNILLAN GLL
Sbjct: 995 QAAATLHRRLLHRVLMAPVTFFNATPTGRILNRFSSDVACADDSLPFILNILLANAAGLL 1054
Query: 1025 GIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGS 1084
G+ VL + LLLL P +Y +Q YR++SRELRRL S++ SP+Y+ +TL G
Sbjct: 1055 GLLAVLGSGLPWLLLLLPPLSIMYYHVQRHYRASSRELRRLGSLTLSPLYSHLADTLAGL 1114
Query: 1085 STIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS 1144
S +RA + F + + L QR ++ WL +RLQL+ A ++S IA +A++
Sbjct: 1115 SVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIALVQH 1174
Query: 1145 RGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQEEL 1203
+ L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+PQE
Sbjct: 1175 QQGL----ANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERLEEYTCDLPQEPQ 1230
Query: 1204 CGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1263
L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GKSS+L
Sbjct: 1231 GQPLQLGTGWLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEKLGIVGRTGSGKSSLL 1290
Query: 1264 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1323
LFRL G++L+DG++ + LR + A++PQ PFLF G++R+NLDP ++ D
Sbjct: 1291 LVLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLHKDR 1350
Query: 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+W L++CH+ E + ++G G S S+GQRQL+CLARALL +K+LC+DE TA
Sbjct: 1351 ALWQALKQCHLSEVITSMGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDEATA 1410
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1438
+VD +T +LQ I TV+TIAHR++T+LN D +L+L G +VE +P TL
Sbjct: 1411 SVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPATL 1466
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Homo sapiens (taxid: 9606) |
| >sp|Q8R4P9|MRP7_MOUSE Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/1360 (37%), Positives = 760/1360 (55%), Gaps = 102/1360 (7%)
Query: 141 QLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDC 200
Q TF + L +CL++L + ++ + + + LS + E
Sbjct: 156 QRGTFLPPLLPGPLGRVCLLILQLAAVLAYGLGWAAPGGPQEPWTHDPFLSSESQETEVA 215
Query: 201 NTDSSYWDLMAFKSIDSVMNRGVIKQLD-FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCN 259
S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 216 EDGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWK------ 269
Query: 260 CTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG---YV 316
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L YV
Sbjct: 270 -EGAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYV 328
Query: 317 LAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQT 376
L +A G +++ + QY + + K+ L+ R ++++ +Y+K L + S GE+
Sbjct: 329 LGLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKALKL---GPSRPPTGEVLN 383
Query: 377 FMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 436
+ D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK IA
Sbjct: 384 LLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNKVIAT 443
Query: 437 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYL 496
I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L KYL
Sbjct: 444 RIMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRVIKYL 503
Query: 497 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLI 556
DA CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVINGL+
Sbjct: 504 DAACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLL 563
Query: 557 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 616
++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 564 ESKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSWDPIGA 613
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYV 673
++ + + L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 614 SQKTFISH---LQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKGFGLA 670
Query: 674 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGG
Sbjct: 671 TQEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGG 730
Query: 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 793
QRAR+ALARAVY +Y+LDD L+AVDA VA +L I+G + TR+LCTH + +
Sbjct: 731 QRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILG-VLSHTTRLLCTHRTEYL 789
Query: 794 SAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN-- 849
AD+V++M+ GQ+ G +++ V W+ +K+++ T+ S +
Sbjct: 790 ERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWA----------EKEQVATSGQSPSVC 839
Query: 850 KQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQA 909
E+++ +++ E + EG V L VY+ Y + G + I +S +LMQA
Sbjct: 840 DLERTTEEELEVEQSTCGCLVQEESKSEGAVALHVYRAYWRAMGSGLAAAILVSLLLMQA 899
Query: 910 SRNGNDLWLSYWVDT-----TGSSQTKYSTS----------------------------- 935
+RNG D WL++W+ GS + S S
Sbjct: 900 TRNGADWWLAHWLSQLKAGRNGSREDPASCSPGSTALFSPRLLLFSPGNLYTPLLSTPLH 959
Query: 936 -----------FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984
FYL+V NS TL+RA FA G+L+AA +H+ LL +++ APV
Sbjct: 960 KAASNGTADVHFYLIVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLMAPVT 1019
Query: 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044
F+D TP GR+LNRFSSD+ +DDSLPF+LNILLAN VGLLG+ VL + LLLL P
Sbjct: 1020 FYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLLLPPL 1079
Query: 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1104
F+Y +Q +YR++ RELRRL S++ SP+Y+ +TL G +RA + F + + +
Sbjct: 1080 SFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEENQRLL 1139
Query: 1105 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1164
L QR ++ WL +RLQL+ A ++S IA +A++ + L + PGLVGL LSY
Sbjct: 1140 ELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLVLSY 1195
Query: 1165 AAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQE----ELCGYQSLSPDWPFQGLI 1219
A + LL +SSFT+TE MVS+ER+ EY DVPQE L W QG +
Sbjct: 1196 ALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDVPQEPHSQPLQSPHQQRISWLTQGSV 1255
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
EFQ+V + Y+P LP AL + F +E G ++GIVGRTG+GKSS+ LFRL G++L+
Sbjct: 1256 EFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAGRVLL 1315
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
D ++ + +LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+ E
Sbjct: 1316 DNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLSEVAV 1375
Query: 1340 AV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
A+ GL+ + E G + S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I
Sbjct: 1376 AMGGLDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICK 1435
Query: 1399 ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1438
TV+TIAHR++T+LN D +L+L G +VE +P L
Sbjct: 1436 RFANKTVLTIAHRLNTILNSDRVLVLQAGRVVELDSPSAL 1475
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Mus musculus (taxid: 10090) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/1232 (36%), Positives = 693/1232 (56%), Gaps = 96/1232 (7%)
Query: 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 340
+LK+++D + F P LL LI F++ + ++ GY+ AI + ++++SF Y H
Sbjct: 323 ILKLIHDLLVFLNPQLLKLLIGFVKSSNSYVWFGYICAILMFAVTLIQSFCLQSYFQHCF 382
Query: 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 400
L + +R+++M+ IY+K L + R +++ GE MSVD+ + ++ N WS
Sbjct: 383 VLGMCVRTTVMSSIYKKALTLSNLARKQYTIGETVNLMSVDSQKLMDATNYMQLVWSSVI 442
Query: 401 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 460
QI ++++ L+ ++ + ++G+ + +LLIPVN +A I N + MK KD+R++ EIL
Sbjct: 443 QITLSIFFLWRELGPSILAGVGVMVLLIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEIL 502
Query: 461 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 520
+ I+ LK + WE F + R E+K+L L + +F TP L S+ TF ++
Sbjct: 503 SGIKILKYFAWEPSFQEQVQGIRKKELKNLLRFGQLQSLLIFILQITPILVSVVTFSVYV 562
Query: 521 LM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 578
L+ + L+A FT + LFN L PL+ P V + ++ A +S+ RL R+LG + L
Sbjct: 563 LVDSANVLNAEKAFTSITLFNILRFPLSMLPMVTSSILQASVSVDRLERYLGGDD----L 618
Query: 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638
+ +A +SNF D AV +A+ +W + + + V+L + G LVAV
Sbjct: 619 DTSA------IRRVSNF---DKAVKFSEASFTW----DPDLEATIQDVNLDIKPGQLVAV 665
Query: 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 698
+G VGSGKSSL++++LGEM HG I GS AYVPQ WI +GTI+DNILFG Y+ +
Sbjct: 666 VGTVGSGKSSLVSAMLGEMENVHGHITIQGSTAYVPQQSWIQNGTIKDNILFGSEYNEKK 725
Query: 699 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 758
Y + LKAC L D+ ++ GGDMA IGEKG+NLSGGQ+ R++LARA Y +DIY+LDD LS
Sbjct: 726 YQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAAYQDADIYILDDPLS 785
Query: 759 AVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
AVDA V + I N ++GP+ L KTRI TH + + D +VV+ KG + GS DL
Sbjct: 786 AVDAHVGKHIF-NKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLGKGTILEKGSYRDL 844
Query: 817 --AVSLYSGFWST---------------------------------NEFDTSLHMQKQE- 840
+++ W T E SL M+++
Sbjct: 845 LDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIPEDAASLAMRRENS 904
Query: 841 ------------------MRTNASSANKQILLQ-EKDVVSVSDDAQEIIEVEQRKEGRVE 881
++ + N +L + EK+V + Q++I+ E + G+V+
Sbjct: 905 LRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEV-----EGQKLIKKEFVETGKVK 959
Query: 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTSFYLVV 940
++Y Y + GW+ L I L L + G++LWLS W D+ + T S+S +
Sbjct: 960 FSIYLKYLQAVGWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTNNSSSHRDMR 1019
Query: 941 LCIFC---MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 997
+ +F + L+ + A+ +H LLT I+ AP+ FFD TP GRI+NR
Sbjct: 1020 IGVFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFDTTPTGRIVNR 1079
Query: 998 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057
FS D+ +DD LP L + F G+ G V++ F ++++P +Y +Q FY +
Sbjct: 1080 FSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISVQVFYVA 1139
Query: 1058 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1117
TSR+LRRLDSV++SPIY+ F+ET+ G IRAF+ + F+A ++ + + Q+ +S +T+
Sbjct: 1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199
Query: 1118 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1177
+ WL++RL+L+ ++ F + + ++ R L T +VG LS A I L +
Sbjct: 1200 NRWLAIRLELVGNLVV-FCSALLLVIYRKTL-----TGDVVGFVLSNALNITQTLNWLVR 1253
Query: 1178 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAAL 1236
+E E +V++ER+ EY++V E P DWP G I+F N +RY+P L L
Sbjct: 1254 MTSEAETNIVAVERISEYINVENEAPWVTDKRPPADWPRHGEIQFNNYQVRYRPELDLVL 1313
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
I I+ G +VG+VGRTGAGKSS+ N LFR+ GGQI++DG+++ + + DLR R
Sbjct: 1314 KGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERL 1373
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISF 1354
++PQ P LF GSLR NLDPF+ D ++W LE H++ V +GL + V E G +
Sbjct: 1374 TIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNL 1433
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1414
S+GQRQL+CL RA+L+ SK+L LDE TA VD +T S++Q I E TVITIAHR+ T
Sbjct: 1434 SIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHT 1493
Query: 1415 VLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1446
+++ D+I++LD+G +VE G+P+ LL + S +
Sbjct: 1494 IMDSDKIMVLDNGKIVEYGSPEELLSNRGSFY 1525
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/1238 (35%), Positives = 701/1238 (56%), Gaps = 85/1238 (6%)
Query: 262 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIA 320
PS +RA+ + + ++ + +GF P LL+ LI+F+ + G++LA
Sbjct: 295 QPSFLRALVRTFTSSLLMSACFNLIQNLLGFVNPQLLSILIRFISDPTAPTWWGFLLAGL 354
Query: 321 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 380
+ L+S +++ QY + + L+LR++I+ +IY+K L + + + E + GE+ MSV
Sbjct: 355 MFLSSTMQTLILHQYYHCIFVMALRLRTAIIGVIYRKALVITNSVKRESTVGEMVNLMSV 414
Query: 381 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 440
D R ++++ + WS P Q+ +A+Y L+ + + ++G+A+ +LLIP+N ++ +
Sbjct: 415 DAQRFMDVSPFINLLWSAPLQVILAIYFLWQILGPSALAGVAVIVLLIPLNGAVSMKMKT 474
Query: 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500
K MK KD RI+ EIL I+ LK+Y WE F + R SE++ L YL A
Sbjct: 475 YQVKQMKFKDSRIKLMSEILNGIKVLKLYAWEPSFLEQVKGIRQSELQLLRKGAYLQAIS 534
Query: 501 VFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 558
F W TP L +L T G++ + LDA F L+LFN L PLN P +I+GL A
Sbjct: 535 TFIWICTPFLVTLITLGVYVYVDESNVLDAEKAFVSLSLFNILKIPLNMLPQLISGLTQA 594
Query: 559 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
+S++R+ FL +E + +E+ SP Y A+ + + T +W +
Sbjct: 595 SVSLKRIQDFLNQNELDPQCVERKTISPGY-------------AITIHNGTFTW----AQ 637
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ L+ +++ +PKG+LVAV+G VG GKSSL++++LGEM G + GS+AYVPQ
Sbjct: 638 DLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGVVSVKGSVAYVPQQA 697
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
WI + T+++N+LFG+ +P+ Y + L+ C L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 698 WIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQR 757
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 795
++LARAVY ++I++LDD LSAVD+ VA+ I + ++GP + KTR+L TH + +
Sbjct: 758 VSLARAVYSDANIFLLDDPLSAVDSHVAKHIF-DQVIGPEGVLAGKTRVLVTHGISFLPQ 816
Query: 796 ADMVVVMDKGQVKWIG--------------------------------SSADLAVSLYSG 823
D ++V+ GQV +G +A+ V L
Sbjct: 817 TDFIIVLAGGQVSEMGHYSALLQHDGSFANFLRNYAPDEDQEDHEAALQNANEEVLLLED 876
Query: 824 FWSTNEFDTS-----LHMQKQEMRTNASSANKQIL------------LQEKDVVSVSDDA 866
ST+ T ++KQ MR +S +++ + L+++ +V+ + +
Sbjct: 877 TLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGEVQNRTMPKKHTNSLEKEALVTKTKET 936
Query: 867 QEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG 926
+I+ E + G V+L+VY +YAK G TL ICL A+ G ++WLS W +
Sbjct: 937 GALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICLLYGGQSAAAIGANVWLSAWSNDAE 996
Query: 927 SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFF 986
+ TS L V + L ++ AF+ G+++AA +H LL + +P FF
Sbjct: 997 EHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAIQAARLLHEALLHNKIRSPQSFF 1056
Query: 987 DQTPGGRILNRFSSDLYMIDDSL-PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1045
D TP GRILNRFS D+Y+ID+ L P IL +L + F + I V+++ +F +++L P
Sbjct: 1057 DTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIMVIVASTPLFMVVVL-PLA 1115
Query: 1046 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVV 1105
+Y +Q FY +TSR+L+RL+S+SRSPI++ F+ET+ G+S IRA+ F V
Sbjct: 1116 VLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVD 1175
Query: 1106 LYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1165
Q++SY + ++ WL + ++ + ++ F A AVIG R +L PGLVGL++SYA
Sbjct: 1176 NNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVIG-RNSL-----NPGLVGLSVSYA 1229
Query: 1166 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS-LSPD-WPFQGLIEFQN 1223
+ L + ++ E ++++ERV EY E +S +P+ WP +G++EF+N
Sbjct: 1230 LQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVESNRAPEGWPTRGMVEFRN 1289
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283
++RY+P L L ++ ++GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLN
Sbjct: 1290 YSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAEGEIVIDGLN 1349
Query: 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAV 1341
+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1350 VAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHLNTFVSSQPA 1409
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
GL+ E G + SVGQRQL+CLARALL+ S+VL LDE TA +D +T ++Q I ++ +
Sbjct: 1410 GLDFQCAEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFE 1469
Query: 1402 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439
TV+TIAHR++T+++ + +L+LD G + E +P L+
Sbjct: 1470 DCTVLTIAHRLNTIMDYNRVLVLDKGVVAEFDSPVNLI 1507
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1227 (36%), Positives = 684/1227 (55%), Gaps = 98/1227 (7%)
Query: 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 340
LLK+VND F P LL LI F +L GY+ AI L ++++SF Y
Sbjct: 327 LLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFCLQCYFQLCF 386
Query: 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 400
KL +K+R++IM +Y+K L + R E++ GE MSVD + +++ N H WS
Sbjct: 387 KLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNFMHMLWSSVL 446
Query: 401 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 460
QI ++++ L+ ++ + ++G+ + +L+IP+N ++ K MK KD+R++ EIL
Sbjct: 447 QIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDKRLKIMNEIL 506
Query: 461 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 520
+ I+ LK + WE F + R E+K+L L +F + TP L S+ TF ++
Sbjct: 507 SGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYV 566
Query: 521 LMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLG-----CSE 573
L+ LDA FT + LFN L PL+ P +I+ ++ A +S RL ++LG S
Sbjct: 567 LVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYLGGDDLDTSA 626
Query: 574 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 633
+H+ NF D A+ +A+ +W E + + V+L + G
Sbjct: 627 IRHD---------------CNF---DKAMQFSEASFTW----EHDSEATVRDVNLDIMAG 664
Query: 634 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKN 693
LVAVIG VGSGKSSL++++LGEM HG I G+ AYVPQ WI +GTI+DNILFG
Sbjct: 665 QLVAVIGPVGSGKSSLISAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGTE 724
Query: 694 YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 753
++ + Y + L+AC L D+ ++ GGD+A IGEKG+NLSGGQ+ R++LARA Y DIY+L
Sbjct: 725 FNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLL 784
Query: 754 DDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811
DD LSAVDA V + I N ++GP+ L KTR+L TH++ + D +VV+ G + G
Sbjct: 785 DDPLSAVDAHVGKHIF-NKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKG 843
Query: 812 S-SADLA---------------------VSLYSGFWSTNEFDTSLHMQKQEMRTNASS-- 847
S SA LA +++ G ++ D L +E+ +A+S
Sbjct: 844 SYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDD-DYGLISSVEEIPEDAASIT 902
Query: 848 ----------------ANKQIL------LQEKDVVSVSDD-----AQEIIEVEQRKEGRV 880
+N + L L+ ++V S+ +D Q++I+ E + G+V
Sbjct: 903 MRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQKLIKKEFIETGKV 962
Query: 881 ELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTS---F 936
+ ++Y Y + G F I L+ ++ + G++LWLS W D+ + T Y S
Sbjct: 963 KFSIYLEYLQAIGLFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYPASQRDM 1022
Query: 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 996
+ V + + F AFG + A+ +H LL I+ AP+ FFD TP GRI+N
Sbjct: 1023 RVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVN 1082
Query: 997 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYR 1056
RF+ D+ +DD+LP L + F+G++ V++ F ++++P IY +Q FY
Sbjct: 1083 RFAGDISTVDDTLPQSLRSWITCFLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYV 1142
Query: 1057 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116
STSR+LRRLDSV+RSPIY+ F+ET++G IRAF+ + F+ + + Q+ +S +T
Sbjct: 1143 STSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWIT 1202
Query: 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1176
++ WL++RL+L+ + F A M VI R L VG LS A I L +
Sbjct: 1203 SNRWLAIRLELVGNLTVFFSALMMVI-YRDTLSG-----DTVGFVLSNALNITQTLNWLV 1256
Query: 1177 SSFTETEKEMVSLERVLEYMDVPQE-ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1235
+E E +V++ER+ EY V E + PDWP +G I+F N +RY+P L
Sbjct: 1257 RMTSEIETNIVAVERITEYTKVENEAPWVTDKRPPPDWPSKGKIQFNNYQVRYRPELDLV 1316
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L I I ++G+VGRTGAGKSS+ N LFR+ GGQI++DG++I + + DLR +
Sbjct: 1317 LRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREK 1376
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS 1353
++PQ P LF GSLR NLDPF+ D +IW LE H+K V + +GL V E+G +
Sbjct: 1377 LTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGN 1436
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S+GQRQL+CL RALL+ SK+L LDE TA VD +T +++Q I +E TVITIAHR+
Sbjct: 1437 LSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLH 1496
Query: 1414 TVLNMDEILILDHGHLVEQGNPQTLLQ 1440
T+++ D++++LD+G ++E G+P+ LLQ
Sbjct: 1497 TIMDSDKVMVLDNGKIIECGSPEELLQ 1523
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/1233 (35%), Positives = 686/1233 (55%), Gaps = 70/1233 (5%)
Query: 262 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 319
PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY
Sbjct: 311 EPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTA 369
Query: 320 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 378
L +++ L++ QY FH+ + ++++++++ +Y+K L + A R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLM 428
Query: 379 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 438
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P+N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKT 488
Query: 439 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 498
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAA 548
Query: 499 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 556
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 557 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 616
A +S++RL FL ELE + I +G N ++ +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERRSIKSGEGN------SITVKNATFTW----A 654
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 655 RGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 714
Query: 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736
WI + ++R+NILFG Y ++AC L D+ ++ GD IGEKGVNLSGGQ+
Sbjct: 715 AWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 774
Query: 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 794
R++LARAVY SDIY+ DD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 775 RVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 833
Query: 795 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD------------------ 831
D+++VM G++ +GS +L A + + ++ E D
Sbjct: 834 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSVSGSGKESKPV 893
Query: 832 ---------TSLHMQKQEMRTNASSAN---KQILLQEKDVVSVSDDAQEIIEVEQRKEGR 879
H+Q+ +++ S + + + E ++ +++E ++ + G+
Sbjct: 894 ENGMLVTDTVGKHLQRHLSNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQ 953
Query: 880 VELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYL 938
V+L+VY NY K G FIT + + S ++ WLS W D + T+ + +F L
Sbjct: 954 VQLSVYWNYMKAIGLFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRL 1013
Query: 939 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 998
V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++NRF
Sbjct: 1014 SVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRF 1073
Query: 999 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058
S +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY ++
Sbjct: 1074 SKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVAS 1133
Query: 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118
SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A+
Sbjct: 1134 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1193
Query: 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L +
Sbjct: 1194 RWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWLVRM 1247
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAAL 1236
+E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L L
Sbjct: 1248 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVL 1307
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR +
Sbjct: 1308 KHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKI 1367
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1354
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G +
Sbjct: 1368 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1427
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1414
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++T
Sbjct: 1428 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1487
Query: 1415 VLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1447
+++ +++LD G + E G P LLQ +S
Sbjct: 1488 IMDYTRVIVLDKGEVRECGAPSELLQQRGIFYS 1520
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1240 (35%), Positives = 684/1240 (55%), Gaps = 86/1240 (6%)
Query: 262 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIA 320
PS ++A+ +G ++ K++ D + F P LL+ LI+F+ + G+++A
Sbjct: 296 KPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGL 355
Query: 321 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 380
+ L S+++S Y ++ +K R+ IM +IY+K L + + + + GEI MSV
Sbjct: 356 MFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSV 415
Query: 381 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 440
D R ++LA + WS P QI +A+Y L+ + + ++G+A +LLIP+N +A +
Sbjct: 416 DAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRA 475
Query: 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500
K MK KD RI+ EIL I+ LK+Y WE F + R E++ L T YL
Sbjct: 476 FQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTT 535
Query: 501 VFFWATTPTLFSLFTFGLFALM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 558
F W +P L +L T ++ + + LDA F ++LFN L PLN P +I+ L A
Sbjct: 536 TFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQA 595
Query: 559 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
+S++R+ +FL E + +E+ SP Y A+ + T +W +
Sbjct: 596 SVSLKRIQQFLSQEELDPQSVERKTISPGY-------------AITIHSGTFTW----AQ 638
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ L+ + + +PKG+LVAV+G VG GKSSL++++LGEM G +H GS+AYVPQ
Sbjct: 639 DLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQA 698
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
WI + T+++N+LFGK +P+ Y +TL+AC L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 699 WIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQR 758
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 795
++LARAVY +DI++LDD LSAVD+ VA+ I + I GP + KTR+L TH + +
Sbjct: 759 VSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVI-GPEGVLAGKTRVLVTHGISFLPQ 817
Query: 796 ADMVVVMDKGQVKWIGS------------------SADLAVSLYSGFWS----------- 826
D ++V+ GQV +G + D W+
Sbjct: 818 TDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEAL 877
Query: 827 ------------TNEFDTSLHMQKQEMRT-NASSAN----------KQILLQEKDVVSVS 863
T+ + +QKQ MR +A S++ + + EK V+ +
Sbjct: 878 LIEDTLSNHTDLTDNDPVTYVVQKQFMRQLSALSSDGEGQGRPVPRRHLGPSEKVQVTEA 937
Query: 864 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 923
+ + E+ G VEL+V+ +YAK G TL ICL + A+ G ++WLS W +
Sbjct: 938 KADGALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTN 997
Query: 924 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 983
+ + +TS L V + FL ++ A + A G ++AA +H LL + +P
Sbjct: 998 DAMADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQ 1057
Query: 984 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043
FFD TP GRILN FS D+Y++D+ L ++ +LL +F + VV+ F ++++P
Sbjct: 1058 SFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILP 1117
Query: 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1103
+Y+ +Q FY +TSR+L+RL+SVSRSPIY+ F+ET+ G+S IRA+ F
Sbjct: 1118 LAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTK 1177
Query: 1104 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1163
V QR+ Y + ++ WLS+ ++ + ++ F A AVIG R +L PGLVGL++S
Sbjct: 1178 VDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIG-RSSL-----NPGLVGLSVS 1231
Query: 1164 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEF 1221
Y+ + L + ++ E +V++ERV EY E + P WP +G +EF
Sbjct: 1232 YSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEF 1291
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+N ++RY+P L L D++ + GG +VGIVGRTGAGKSS+ LFR+ G+I +DG
Sbjct: 1292 RNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDG 1351
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--E 1339
LN+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1352 LNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQ 1411
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
GL+ E G + SVGQRQL+CLARALL+ S++L LDE TA +D +T +++Q I ++
Sbjct: 1412 PAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQ 1471
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439
TV+TIAHR++T+++ +L+LD G + E +P L+
Sbjct: 1472 FDTCTVLTIAHRLNTIMDYTRVLVLDKGVVAEFDSPANLI 1511
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Homo sapiens (taxid: 9606) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1256 (35%), Positives = 687/1256 (54%), Gaps = 89/1256 (7%)
Query: 254 AQRSCNCTNPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQQGSG-H 311
+QRS + SL + + +G PY + L K +D + F GP +L LI F+ S +
Sbjct: 304 SQRS---SEASLSKVLYKTFG-PYFLMSFLFKAAHDLLMFTGPEILKLLINFVNNKSAPN 359
Query: 312 LDGYVLAIALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFS 370
GY L + + L++ QY FH+ + ++L+++I+ +IY+K L + + R +
Sbjct: 360 WQGYFYTGLLFVCACLQTLILHQY-FHICFVTGMRLKTAIVGVIYRKALVITNSARKTST 418
Query: 371 DGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPV 430
GEI MSVD R ++LA + WS P Q+ +ALYLL+ + + ++G+A+ ILL+P+
Sbjct: 419 VGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLAGVAVMILLVPI 478
Query: 431 NKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHL 490
N +A MK KD RI+ EIL I+ LK+Y WE F +++ R E+K L
Sbjct: 479 NAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKELKVL 538
Query: 491 STRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSF 548
YL A F W P L +L TF ++ + LDA F LALFN L PLN
Sbjct: 539 KKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFPLNIL 598
Query: 549 PWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDAT 608
P VI+ +++A +S++RL FL E + S I ++N + ++++++AT
Sbjct: 599 PMVISSIVEASVSLKRLRVFLSHEELDPD--------SIIRGPITN---AEGSIVVKNAT 647
Query: 609 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 668
SW + LN ++ +P+GSL+AV+G+VG GKSSLL+++LGEM G + G
Sbjct: 648 FSWSKTDPPS----LNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDKKEGYVVVKG 703
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
SIAYVPQ WI + T+ DNI+FG+ + Y ++AC L D+ ++ GD IGEKGV
Sbjct: 704 SIAYVPQQAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGV 763
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILC 786
NLSGGQ+ R++LARAVY +D Y+ DD LSAVDA V + I I GP + KTR+L
Sbjct: 764 NLSGGQKQRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVI-GPKGILKNKTRVLV 822
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL------------------------------ 816
TH V + D ++VM G++ +GS +L
Sbjct: 823 THAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMESSDASSPS 882
Query: 817 ---AVSLYSGFWSTNEFDTSLHMQKQEMRT----------NASSANKQILLQEKDVVSVS 863
+ +G + +H Q T +S+A Q L EK+
Sbjct: 883 GKEGKPVENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKN----- 937
Query: 864 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 923
+ ++ E + K GRV+ TVY Y K G +I+ + + + ++ WLS W D
Sbjct: 938 --SWKLTEADTAKTGRVKATVYWEYMKAIGLYISFLSVFLFMCNHIASLASNYWLSLWTD 995
Query: 924 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 983
+ T+ T+ L V + + + + G + A+ +H LL ++ +P+
Sbjct: 996 DPVVNGTQQYTNVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPM 1055
Query: 984 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043
FF++TP G +++RFS ++ ID ++P I+ + + + ++G +++ +++ P
Sbjct: 1056 SFFERTPSGNLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPP 1115
Query: 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1103
+Y +Q FY +TSR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ + F+ +
Sbjct: 1116 LGLVYLLVQRFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMK 1175
Query: 1104 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1163
V Q+ Y + A+ WL++RL+ + I+ F A AVI +R L +PGL+GL++S
Sbjct: 1176 VDENQKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAVI-ARNKL-----SPGLIGLSVS 1229
Query: 1164 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEF 1221
Y+ I + L + ++ E +V++ERV EY ++ +E + +P WP +G +EF
Sbjct: 1230 YSLQITAYLNWLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEF 1289
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+ +RY+ L L +IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DG
Sbjct: 1290 RGFGLRYREDLDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDG 1349
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1341
+NI + DLR + ++PQ P LF GSLR NLDPF + D IW LE H+K V ++
Sbjct: 1350 INIAKIGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSL 1409
Query: 1342 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
L E G + SVGQRQL+CLARALL+ SK+L LDE TA VD +T +++Q+ I S+
Sbjct: 1410 PDKLNHECSEGGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQ 1469
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455
+ TV+TIAHR++T+++ +L+LD G +VE +P LLQ + +F S + S +
Sbjct: 1470 FEECTVLTIAHRLNTIMDYTRVLVLDRGEVVECDSPDNLLQAK-GLFYSMAKDSGL 1524
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/1240 (35%), Positives = 695/1240 (56%), Gaps = 73/1240 (5%)
Query: 262 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 319
+PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY+
Sbjct: 311 DPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPEILELIINFVNDREAPDWQGYLYTA 369
Query: 320 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 378
L +++ L++ QY FH+ + ++++++++ +Y+K L + + R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVTGMRIKTAVVGAVYRKALVITNSARKSSTVGEIVNLM 428
Query: 379 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 438
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVTLALYFLWLNLGPSVLAGVAVMILMVPFNAVMAMKT 488
Query: 439 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 498
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMNIRQEELKVLKKSAYLAA 548
Query: 499 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 556
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDEKNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 557 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 616
A +S++RL FL ELE + I +G NS + +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERWSIKDG-GGMNS----ITVKNATFTW----A 655
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676
++ LN ++ +P G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 656 RDEPPTLNGITFAIPDGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 715
Query: 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736
WI + ++R+NILFG+ Y ++AC L D+ ++ GD+ IGEKGVNLSGGQ+
Sbjct: 716 AWIQNDSLRENILFGRPLQEHCYKAVMEACALLPDLEILPSGDLTEIGEKGVNLSGGQKQ 775
Query: 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 794
R++LARAVY SDIY+LDD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 776 RVSLARAVYCNSDIYLLDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 834
Query: 795 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD----------------TS 833
D+++VM G++ +GS +L A + + ++ E D S
Sbjct: 835 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFVRTYANTEQDLASEDDSKNGVSGLGKES 894
Query: 834 LHMQKQEMRTNA-----------SSANKQILLQEKDVVS------VSDDAQEIIEVEQRK 876
++ + T+A SS++ + Q+ + V ++ +++E ++ +
Sbjct: 895 KPVENGILVTDAVGKPLQRHLSNSSSHSVVTNQQHSSTAELQKSGVKEETWKLMEADKAQ 954
Query: 877 EGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTS 935
G+V+L+VY NY K G I+ + + S ++ WLS W D + + T+ + +
Sbjct: 955 TGQVKLSVYWNYMKAIGLCISFLSIFLFLCNHVSALASNYWLSLWTDDRPAVNGTQENRN 1014
Query: 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
F L V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++
Sbjct: 1015 FRLSVYGALGILQGVAVFGYSMAVSIGGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLV 1074
Query: 996 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1055
NRFS +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY
Sbjct: 1075 NRFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFY 1134
Query: 1056 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1115
++SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y +
Sbjct: 1135 VASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSI 1194
Query: 1116 TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1175
A+ WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L
Sbjct: 1195 VANRWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWL 1248
Query: 1176 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLP 1233
+ +E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L
Sbjct: 1249 VRMSSEMETNIVAVERLKEYSETEKEASWQIQETAPPSTWPHSGRVEFRDYCLRYREDLD 1308
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
L IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR
Sbjct: 1309 LVLKHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLR 1368
Query: 1294 GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1351
+ ++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G
Sbjct: 1369 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGG 1428
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
+ SVGQRQL+CLARALL+ +K+L LDE TA VD +T ++Q+ I ++ + TV+TIAHR
Sbjct: 1429 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTVLTIAHR 1488
Query: 1412 ISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
++T+++ +++LD G + E G P LLQ VF S +
Sbjct: 1489 LNTIMDYTRVIVLDKGEIRECGAPSELLQQR-GVFYSMAK 1527
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1455 | ||||||
| 358346459 | 1539 | ABC transporter C family member [Medicag | 0.995 | 0.941 | 0.666 | 0.0 | |
| 255543321 | 1395 | multidrug resistance-associated protein, | 0.895 | 0.934 | 0.759 | 0.0 | |
| 356547472 | 1384 | PREDICTED: ABC transporter C family memb | 0.944 | 0.992 | 0.702 | 0.0 | |
| 225443168 | 1305 | PREDICTED: ABC transporter C family memb | 0.872 | 0.972 | 0.769 | 0.0 | |
| 156556172 | 1457 | Multidrug Resistance associated Protein | 0.994 | 0.993 | 0.675 | 0.0 | |
| 334184186 | 1404 | multidrug resistance-associated protein | 0.949 | 0.984 | 0.653 | 0.0 | |
| 298286923 | 1410 | RecName: Full=ABC transporter C family m | 0.950 | 0.980 | 0.650 | 0.0 | |
| 297831764 | 1193 | ATMRP11 [Arabidopsis lyrata subsp. lyrat | 0.818 | 0.998 | 0.702 | 0.0 | |
| 298204674 | 1205 | unnamed protein product [Vitis vinifera] | 0.738 | 0.891 | 0.746 | 0.0 | |
| 5001458 | 1146 | putative ABC transporter [Arabidopsis th | 0.753 | 0.956 | 0.707 | 0.0 |
| >gi|358346459|ref|XP_003637285.1| ABC transporter C family member [Medicago truncatula] gi|355503220|gb|AES84423.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2042 bits (5291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1020/1530 (66%), Positives = 1208/1530 (78%), Gaps = 81/1530 (5%)
Query: 4 ICPNSPFVWDG--STFSKCFDDMIL----DFATNMVTIFIILIIGITQR-----SPRQNQ 52
ICPNSP V + ++L FA N+VTI +IL++GI Q+ + R +
Sbjct: 13 ICPNSPSVPFKIIKVLYEFHISLVLVYFTGFAVNVVTIAMILVLGIKQKISGRGTQRSDA 72
Query: 53 RINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLS 112
+++L+EK L+ +P +GAC S ++++ LLK++ G FV YH WL SCSE VW I+L +
Sbjct: 73 QMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIILFT 132
Query: 113 RCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINI 172
+CA HC+ +R+LCFWWI+ P++GI H + F S EV C+ E +VL+++ FG+ IN+
Sbjct: 133 KCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVINV 192
Query: 173 IRVKRASSRRSSIEESLLSVDGDVEEDCNTD----SSYWDLMAFKSIDSVMNRGVIKQLD 228
IR+KR SS+ S +E+ LLS GD+EE N D ++WD M FK I VMN+GV+KQLD
Sbjct: 193 IRLKRLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQLD 252
Query: 229 FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVND 288
+DLL L DM PS CH +L+ W+AQ S N NPSL A+C AYG+PY+CLGLLKV+ND
Sbjct: 253 SDDLLPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKVIND 312
Query: 289 SIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348
IGFAGPLLLNKLIKFLQQGS DGY+LA++LGLTSI+KSF DTQY+F LSKLKLKLRS
Sbjct: 313 GIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRS 372
Query: 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL 408
SIMT+IY+KCLYV LAERS+F++GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYL
Sbjct: 373 SIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYL 432
Query: 409 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKM 468
LYTQVKFAFVSGLAI ILLIPVNKWI+ LIA ATE+MMK+KDERIRRTGE+LT+IRTLKM
Sbjct: 433 LYTQVKFAFVSGLAIAILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKM 492
Query: 469 YGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDA 528
YGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP+LFSL TFGLFALMGHQLDA
Sbjct: 493 YGWELLFSSWLMATRSLEVKHLATRKYLDAWCVFFWATTPSLFSLSTFGLFALMGHQLDA 552
Query: 529 AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 588
A VFTC+ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL C E++ E+ + NS
Sbjct: 553 ATVFTCIALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRREVGE--NSSCSS 610
Query: 589 SNGLSNFNS-KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647
S +S +D+AV +QDA CSW +EE +N+VLN V+L L KGS VAVIGEVGSGKS
Sbjct: 611 SFLSKQPDSLQDLAVFIQDACCSWSSGDEEAKNLVLNHVTLSLSKGSFVAVIGEVGSGKS 670
Query: 648 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 707
SL+ SILGEM L HGSI++ GS+AYVPQVPW++SGT+RDNILFGK+Y+P+ Y++T+ AC
Sbjct: 671 SLIYSILGEMRLDHGSIYSHGSVAYVPQVPWVISGTVRDNILFGKSYNPERYADTINACA 730
Query: 708 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767
LDVDIS MVGGDMAYIGEKGVNLSGGQRARLALAR +YH SD+ MLDD+LSAVD QVA+W
Sbjct: 731 LDVDISSMVGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDILSAVDVQVAQW 790
Query: 768 ILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 827
IL NAI+GP + KTR+LCTHN+QAIS+ADM +V+DKG VKW+G S+D SLY+ F
Sbjct: 791 ILHNAILGPLLKGKTRLLCTHNIQAISSADMTIVLDKGCVKWMGISSDFPTSLYTEFSPL 850
Query: 828 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 887
NE D++ H +Q N+S + +Q L ++ V+ + +++IEVE RKEG+VEL VYKN
Sbjct: 851 NEMDSTPHNHQQSCSINSSISEEQS-LPDRIVMDTLEGEEDVIEVELRKEGKVELGVYKN 909
Query: 888 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCM 946
YA F+GWFI ++ICLSA+LMQASRN NDLWLSYWVDTT QT YS SFYL +LC+FC+
Sbjct: 910 YAAFTGWFIAVIICLSALLMQASRNANDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCI 969
Query: 947 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN-------RFS 999
NS TLVRAFSFAFG L+AA KVHN LL+K++NAPV FFDQTPGGRILN R S
Sbjct: 970 MNSIFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLEYDVFRLS 1029
Query: 1000 SDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ------------------VFFLLLL 1041
SDLY IDDSLPFILNILLANFVGLLGIA++LSYVQ VFFL+LL
Sbjct: 1030 SDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVFMIFLSFFFLCTAILKFVFFLVLL 1089
Query: 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1101
+PFW+IYS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFKSED+F +KF
Sbjct: 1090 LPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFSKFT 1149
Query: 1102 EHVVLYQRTSYSELTASLWLSLRL-----------------------------------Q 1126
+H+ LYQ+TSY+E+ ASLWLSLRL Q
Sbjct: 1150 DHITLYQKTSYTEIVASLWLSLRLQVSLHFAKLVVRYYIRFELTKYGISTVLLLIMTFFQ 1209
Query: 1127 LLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEM 1186
LLAAFIISFIA MAV GS G+LP F TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEM
Sbjct: 1210 LLAAFIISFIALMAVAGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEM 1269
Query: 1187 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1246
VS+ER L+YMD+PQEE G Q L+PDWP QG+IEFQ+VT++Y PSLPAAL +I+F IEGG
Sbjct: 1270 VSIERALQYMDIPQEEQAGCQYLNPDWPNQGVIEFQHVTLKYMPSLPAALCNISFKIEGG 1329
Query: 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1306
TQVGI+GRTGAGKSS+L ALFRLTPIC G I VDG++I N PVR+LR A+VPQSPFLF
Sbjct: 1330 TQVGIIGRTGAGKSSVLTALFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLF 1389
Query: 1307 EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLA 1365
EGSLRDNLDPF NDD KIW LEKCHVKEEVEA GL VKE G+SFSVGQRQL+CLA
Sbjct: 1390 EGSLRDNLDPFKTNDDSKIWDALEKCHVKEEVEAAGGLNVLVKEGGMSFSVGQRQLLCLA 1449
Query: 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1425
RALLKSSKVLCLDECTA+VD QTAS+LQ+ ISSECKGMTVITIAHRISTV+N+D ILILD
Sbjct: 1450 RALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVITIAHRISTVINLDNILILD 1509
Query: 1426 HGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455
HG+L EQG+PQ LL+D S+FSSFV+AS+M
Sbjct: 1510 HGNLAEQGHPQILLKDGTSIFSSFVKASSM 1539
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543321|ref|XP_002512723.1| multidrug resistance-associated protein, putative [Ricinus communis] gi|223547734|gb|EEF49226.1| multidrug resistance-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2027 bits (5252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1312 (75%), Positives = 1137/1312 (86%), Gaps = 9/1312 (0%)
Query: 149 EVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDS---- 204
+VL+CLKE ++LLD++F ISINIIR++ AS + SSIE+ LLS D D+E+ DS
Sbjct: 88 QVLECLKESSVILLDVLFSISINIIRIRAASPKNSSIEDPLLSADIDIEQAYPVDSGNIQ 147
Query: 205 SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 264
S W+LM FKSI VM RG+IKQLDFEDLLGLP DM+P +CH +L CWQAQ++ +NP
Sbjct: 148 SCWNLMTFKSITPVMKRGIIKQLDFEDLLGLPDDMEPLSCHDRLSCCWQAQQTS--SNPL 205
Query: 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLT 324
L++AICCAYG+PY +GLLKV ND IGFAGPLLLNKLI+FLQ+GS H DGY+LA++LGLT
Sbjct: 206 LLKAICCAYGWPYFRIGLLKVFNDCIGFAGPLLLNKLIRFLQRGSAHWDGYLLALSLGLT 265
Query: 325 SILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDR 384
S+LKSF DTQYSFHL+KLKLKLR+SIMT+IYQKCL V LAERS+FS+GEIQTFMSVD DR
Sbjct: 266 SVLKSFLDTQYSFHLAKLKLKLRASIMTVIYQKCLCVTLAERSKFSEGEIQTFMSVDADR 325
Query: 385 TVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 444
TVNL NSFHD WSLP QIGVALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEK
Sbjct: 326 TVNLCNSFHDVWSLPLQIGVALYLLYTQVKFAFLSGLAITILLIPVNKWISELIASATEK 385
Query: 445 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504
MMKQKDERIR+TGEILT+IRTLKMYGWE +FSS LM+TRS+EVKHL+TRKYLDAWCVFFW
Sbjct: 386 MMKQKDERIRKTGEILTYIRTLKMYGWEHLFSSRLMETRSTEVKHLATRKYLDAWCVFFW 445
Query: 505 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 564
ATTPTLFSLFTFGLF LMGHQL+AA VFTCLALFN+LISPLNSFPWVINGLIDAFIS RR
Sbjct: 446 ATTPTLFSLFTFGLFTLMGHQLEAATVFTCLALFNNLISPLNSFPWVINGLIDAFISTRR 505
Query: 565 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 624
L++FLGC E KH+LEQ S S N SNF S DMAV+M D C+W +E++QN+VLN
Sbjct: 506 LSKFLGCPENKHKLEQRTESLS--PNYQSNFVSDDMAVMMHDVCCAWSSGDEQQQNLVLN 563
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTI 684
V++ LPKGS +A++GEVGSGKSSLL +ILGEM GS+H+SGS AYVPQVPWILSGT+
Sbjct: 564 NVTVTLPKGSFIAIVGEVGSGKSSLLGAILGEMRFIRGSVHSSGSRAYVPQVPWILSGTV 623
Query: 685 RDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744
R+NILFGKNYD + Y +T+KAC LDVDIS+M GGDMAYIGEKGVNLSGGQRAR+ALARA+
Sbjct: 624 RENILFGKNYDSERYLDTIKACALDVDISMMAGGDMAYIGEKGVNLSGGQRARIALARAI 683
Query: 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804
Y GSD+YMLDDVLSAVDA+VAR IL NAI+GP + QKTR+LCTHNVQAIS+AD +VVM++
Sbjct: 684 YQGSDVYMLDDVLSAVDAEVARCILQNAILGPLLDQKTRVLCTHNVQAISSADRIVVMER 743
Query: 805 GQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD 864
G VKW+G+S DLAVS YS F NEFDT ++Q Q +R N S+ + + +K+ + VS+
Sbjct: 744 GHVKWVGNSTDLAVSSYSAFSLQNEFDTLSYVQGQGLRINTSTESIKSPSVDKESICVSE 803
Query: 865 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 924
+AQEI EVE RK GRVEL VYKNY FSG FI +VI LSAILMQASRNGNDLWLSYWVDT
Sbjct: 804 EAQEIFEVELRKAGRVELAVYKNYVAFSGCFIIVVIGLSAILMQASRNGNDLWLSYWVDT 863
Query: 925 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984
TGSS +STSFYL VLCIFC+ NS LTLVRAFSFAFG LRAA++VHNTLL K+++AP+
Sbjct: 864 TGSSHGGFSTSFYLAVLCIFCIVNSSLTLVRAFSFAFGGLRAAIQVHNTLLKKLIDAPIQ 923
Query: 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGIA++LSYVQV FLLLL+PF
Sbjct: 924 FFDQTPAGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVAFLLLLLPF 983
Query: 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1104
WFIYSKLQFFYRSTSRELRRLDSVSRSPIYA+FTETL+G+STIRAFKSED F+AKF EHV
Sbjct: 984 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYATFTETLDGTSTIRAFKSEDCFLAKFTEHV 1043
Query: 1105 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1164
LYQRTSYSE ASLWLSLRLQL+AAFIISF+A MAV+GSRG LP + TPGLVGLALSY
Sbjct: 1044 GLYQRTSYSETIASLWLSLRLQLIAAFIISFVAVMAVVGSRGYLPISSGTPGLVGLALSY 1103
Query: 1165 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1224
AAPIVSLLG+FL+SFTETEKEMVS+ER L+YMD+ QEEL G QSL PDWPFQGLIEFQNV
Sbjct: 1104 AAPIVSLLGSFLTSFTETEKEMVSVERALQYMDISQEELEGSQSLGPDWPFQGLIEFQNV 1163
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
TMRYKPSLP AL + FT+ GGTQVGIVGRTGAGKSSILNALFRL+PI GG ILVDGLNI
Sbjct: 1164 TMRYKPSLPPALDGVTFTVAGGTQVGIVGRTGAGKSSILNALFRLSPISGGCILVDGLNI 1223
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGL 1343
I+ PVRDLR F+VVPQ+PFLFEGSLRDNLDP + DLKIWS LE+CH+KEEVE A GL
Sbjct: 1224 IDVPVRDLRAHFSVVPQTPFLFEGSLRDNLDPLQTSSDLKIWSTLEQCHIKEEVEMAGGL 1283
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
+ VK SG SFSVGQRQL+CLARALLKSS+VLCLDECTANVD QTASILQNAIS+EC+GM
Sbjct: 1284 DALVKGSGSSFSVGQRQLLCLARALLKSSRVLCLDECTANVDTQTASILQNAISTECEGM 1343
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455
TVITIAHRISTV+NMD IL+LD G+++EQGNPQ LL+D + FSSF +ASTM
Sbjct: 1344 TVITIAHRISTVMNMDHILVLDRGNVIEQGNPQALLRDGFTRFSSFAKASTM 1395
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547472|ref|XP_003542136.1| PREDICTED: ABC transporter C family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2013 bits (5214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1004/1429 (70%), Positives = 1173/1429 (82%), Gaps = 55/1429 (3%)
Query: 37 IILIIGITQRSPR----QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSY 92
+I+++G Q+ R + ++ L EK L+++P VGACLS VD+I L K+ + FV Y
Sbjct: 1 MIVVLGFNQKIGRGFRLSDSQMTLPEKFVLNLIPAVGACLSIVDLIFLWKKDHNSHFVGY 60
Query: 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLK 152
H+W +SCSE +W +
Sbjct: 61 HKWFNSCSELILWVSV-------------------------------------------- 76
Query: 153 CLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEE----DCNTDSSYWD 208
C+ E +VLL+I F I+IN+IR+K S + S +E+ LLS D+EE D + ++WD
Sbjct: 77 CIMESLVVLLNISFSIAINVIRIKIPSFKSSLLEDPLLSNGVDLEEGGYNDLGNNGNFWD 136
Query: 209 LMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRA 268
LM FK I VMN GVIKQLD EDLL LPTD+ PS+CH +LSCWQAQ S N +NPSL RA
Sbjct: 137 LMTFKFITPVMNHGVIKQLDPEDLLPLPTDIGPSSCHDVILSCWQAQLSNNDSNPSLFRA 196
Query: 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILK 328
+C AYG+PY+CLGLLKV+ND IGFAGPLLLNKLI+FLQQGS +LDGY+LA++LGLTSI+K
Sbjct: 197 LCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIK 256
Query: 329 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNL 388
SF DTQY+FHLSKLKLKLRSSIMT+IY+KCL V LAERS+F++GEIQTFMSVD DRTVNL
Sbjct: 257 SFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNL 316
Query: 389 ANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 448
NSFHD WSLP QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI+ LIA ATE+MMK+
Sbjct: 317 CNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISQLIARATEQMMKE 376
Query: 449 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 508
KDERIRRTGE+LT+IRTLKMYGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP
Sbjct: 377 KDERIRRTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTP 436
Query: 509 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRF 568
TLFSLFTFGLFALMGH+LDAAMVFTCLALFN+LISPLNSFPWVINGLIDA IS RRL+RF
Sbjct: 437 TLFSLFTFGLFALMGHELDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRF 496
Query: 569 LGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSL 628
L C E K ++ +SPS + + + + + V +QDA C+W + E+ N+VLN V+L
Sbjct: 497 LSCPERKFKVGDTNSSPSSFLSKQPD-SVQGLGVFIQDACCTWSSSEEQALNLVLNHVTL 555
Query: 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNI 688
+ +GS VAVIGEVGSGKSSLL SILGEM L GS++++ SIAYVPQVPWILSGT+RDNI
Sbjct: 556 SVSQGSFVAVIGEVGSGKSSLLYSILGEMQLARGSVYSNESIAYVPQVPWILSGTVRDNI 615
Query: 689 LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748
LFGK+YDP+ Y++TL+AC LDVD+S+MV GDMAYIGEKGVNLSGGQRARLALARA+YH S
Sbjct: 616 LFGKSYDPERYTDTLQACALDVDVSMMVRGDMAYIGEKGVNLSGGQRARLALARAMYHDS 675
Query: 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
D+ MLDDVLSAVD QVA+ IL NAI+GP M +KTR+LCTHN+QAIS+ADM+VVMDKG++K
Sbjct: 676 DVVMLDDVLSAVDVQVAQRILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGRIK 735
Query: 809 WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQE 868
W+G+SAD +S Y+ F NE D++LH +Q TN SS +K+ L D+V V + A+E
Sbjct: 736 WMGNSADFPISSYTEFSPLNEIDSALHNHRQSCSTNLSSKSKEQSLPNSDIVHVLEGAEE 795
Query: 869 IIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG-S 927
I+EVE RKEG+VEL VYK+YA F+GWF+T++ICLSAILMQASRNGNDLWLS+WVDTT S
Sbjct: 796 IVEVELRKEGKVELGVYKSYAVFTGWFMTVIICLSAILMQASRNGNDLWLSFWVDTTTES 855
Query: 928 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 987
SQT+YS SFYL +LC+FC+ NS TLVRAFSFAFG L+AA KVHN LL K+VNAPV FFD
Sbjct: 856 SQTRYSVSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNKLLNKLVNAPVQFFD 915
Query: 988 QTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1047
QTPGGRILNR SSDLY IDDSLPFI+NILLANFVGLLGI ++L YVQVFFLLLL+PFW+I
Sbjct: 916 QTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYI 975
Query: 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1107
YS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFK+ED+F AKF EH+ LY
Sbjct: 976 YSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKAEDFFFAKFIEHITLY 1035
Query: 1108 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAP 1167
Q+TSY+E+ ASLWLSLRLQLL AFI+SFIA MAV+GS G+LP F TPGLVGLALSYAAP
Sbjct: 1036 QKTSYTEIVASLWLSLRLQLLGAFIVSFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAP 1095
Query: 1168 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1227
IVSLLG+FLSSFTETEKEMVS+ER L+YMD+PQEE G LSPDWP QG+IEFQ+VT++
Sbjct: 1096 IVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQSVTLK 1155
Query: 1228 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1287
Y PSLPAAL +++F I GGTQVGI+GRTGAGKSS+LNALFRLTPIC G I +DG++I N
Sbjct: 1156 YMPSLPAALCNLSFRIVGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGVDIKNI 1215
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1346
PVR+LR A+VPQSPFLFEGSLRDNLDP MNDDLKIW+VLEKCHVKEEVEA GL+
Sbjct: 1216 PVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNVLEKCHVKEEVEAAGGLDVL 1275
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406
VKE+G+SFSVGQRQL+CLARALLKSSKVLCLDECTANVD QTAS+LQN ISSECKGMTVI
Sbjct: 1276 VKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECKGMTVI 1335
Query: 1407 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455
TIAHRISTV+NMD ILILDHG L EQGNPQ LL+D S+FSSFVRAS M
Sbjct: 1336 TIAHRISTVINMDSILILDHGKLAEQGNPQILLKDGTSIFSSFVRASAM 1384
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443168|ref|XP_002264313.1| PREDICTED: ABC transporter C family member 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1980 bits (5130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 988/1284 (76%), Positives = 1105/1284 (86%), Gaps = 15/1284 (1%)
Query: 186 EESLLSVDGDVEEDCNTDS----------SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 235
+E L S ++E + N D+ SYW L+ FK+I SVMN GV+KQLDFEDLL L
Sbjct: 23 KELLFSKTYNLEVEANMDTLTGQLKGKTQSYWHLLTFKAITSVMNHGVVKQLDFEDLLQL 82
Query: 236 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 295
P DMDPS+CH+ LLSCW AQ+ NC+NPSL RAICCAYG+PY LGLLKVVND IGF GP
Sbjct: 83 PIDMDPSSCHATLLSCWHAQQRHNCSNPSLFRAICCAYGWPYFRLGLLKVVNDCIGFVGP 142
Query: 296 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355
+LLN LI+FLQQGSG+LDGY+LA+A+GL I KSF DTQY+FHLSKLKLKLRSSIMT+IY
Sbjct: 143 VLLNNLIRFLQQGSGNLDGYILAVAMGLIPIFKSFLDTQYTFHLSKLKLKLRSSIMTVIY 202
Query: 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 415
KCL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKF
Sbjct: 203 HKCLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKF 262
Query: 416 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 475
AFVSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F
Sbjct: 263 AFVSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLF 322
Query: 476 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 535
SWLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCL
Sbjct: 323 MSWLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCL 382
Query: 536 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS- 593
ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S
Sbjct: 383 ALFNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQF 442
Query: 594 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 653
NF +DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSI
Sbjct: 443 NFKLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSI 502
Query: 654 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 713
L EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DIS
Sbjct: 503 LKEMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDIS 562
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
LMVGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI
Sbjct: 563 LMVGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAI 622
Query: 774 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 833
+GP M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+GSS D +VS YS F S NEF S
Sbjct: 623 LGPLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVGSSTDFSVSSYSTFCSLNEFTVS 682
Query: 834 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 893
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SG
Sbjct: 683 -QVRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSG 741
Query: 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTT-GSSQTKYSTSFYLVVLCIFCMFNSFLT 952
WFIT+VICLSAILMQASRNGNDLWLSYWVDTT GSS T+YSTSFYLVVLCIFC+ NSFLT
Sbjct: 742 WFITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVVLCIFCVINSFLT 801
Query: 953 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1012
LVRAFSFAFG LRAAV+VHNTLL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFI
Sbjct: 802 LVRAFSFAFGGLRAAVQVHNTLLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFI 861
Query: 1013 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSP 1072
LNILLAN VGLLGIA+VLSYVQV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSP
Sbjct: 862 LNILLANIVGLLGIAIVLSYVQVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSP 921
Query: 1073 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1132
I+ASFTETL+GSSTIRAFK ED F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +
Sbjct: 922 IFASFTETLDGSSTIRAFKCEDLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALV 981
Query: 1133 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1192
ISF+A MAVIGSR +LP + TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERV
Sbjct: 982 ISFVAMMAVIGSRDSLPISLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERV 1041
Query: 1193 LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1252
L+YMD+PQEEL G QSLSP+WP +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+
Sbjct: 1042 LQYMDIPQEELNGCQSLSPNWPSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGII 1101
Query: 1253 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1312
GRTGAGKSSILNALFRLTPIC G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRD
Sbjct: 1102 GRTGAGKSSILNALFRLTPICKGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRD 1161
Query: 1313 NLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKS 1371
NLDPF ++DDLKIW LE+CHVKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKS
Sbjct: 1162 NLDPFRVSDDLKIWKTLERCHVKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKS 1221
Query: 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVE 1431
SKVLCLDECTAN+DAQT+S+LQNAI +EC+GMTVITIAHRISTVL+MD ILILD G LVE
Sbjct: 1222 SKVLCLDECTANIDAQTSSVLQNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVE 1281
Query: 1432 QGNPQTLLQDECSVFSSFVRASTM 1455
QGNPQ LLQD S FS F +ASTM
Sbjct: 1282 QGNPQVLLQDHSSRFSGFAKASTM 1305
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|156556172|emb|CAO94660.1| Multidrug Resistance associated Protein 1 [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 1963 bits (5085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 987/1462 (67%), Positives = 1189/1462 (81%), Gaps = 15/1462 (1%)
Query: 1 MDFICPNSPFVWDGSTFSKCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKV 60
+ ICP+SP+VW+G+ S+CF +++L F NM T+ +I+++G+T+RS R+++RI+L K+
Sbjct: 4 LKHICPDSPYVWNGNGVSRCFSNIVLGFGANMATLIVIVLVGVTRRSGRRSRRIHLSAKI 63
Query: 61 FLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHCL 120
L +P +GA +S ++++LL++ + G ++ E+L S F VW ++L+S C + +
Sbjct: 64 LLFTVPALGAFVSFFEIVVLLRKIVGGYPFAFQEYLFPGSLFGVWVTVLLVSICDYWFVI 123
Query: 121 FCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASS 180
FC+R+LC WWIIKP + I H V F+S E+L CL E L LD FGI INII+ K AS
Sbjct: 124 FCNRLLCLWWIIKPFLWIPHLQVVFTSQELLPCLGESFLAFLDFTFGILINIIKSKWASH 183
Query: 181 RRS--SIEESLLSVDGDVEEDCNT---DSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 235
R S SIEE LL D + C ++ W ++ FKSIDSVM GV +QLDF DLL L
Sbjct: 184 RSSCDSIEEPLLPCKVDAKGHCGILGLANNLWRIITFKSIDSVMENGVKRQLDFNDLLQL 243
Query: 236 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 295
P DMD S C++ L CW+AQ+ N +NPSL++A+CCAYG+PY +GLLKV+ND + F GP
Sbjct: 244 PEDMDSSCCYNLLQHCWEAQQRNNNSNPSLLKAVCCAYGWPYFRIGLLKVINDCLSFVGP 303
Query: 296 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355
+LLNKLIKFLQQGS H DGY+ AI+LGL+S+LKSF DTQYSFHL+++KLKLRSSIMTI+Y
Sbjct: 304 VLLNKLIKFLQQGSNHYDGYIFAISLGLSSVLKSFLDTQYSFHLARIKLKLRSSIMTIVY 363
Query: 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 415
KCL VRLAERS+FS+GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYLLY QVKF
Sbjct: 364 CKCLSVRLAERSKFSEGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYVQVKF 423
Query: 416 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 475
AF+SG+AITILLIPVNKWIA LIA AT+ MM+QKDERIRRT E+LT+IRTLKMYGWE +F
Sbjct: 424 AFLSGIAITILLIPVNKWIAQLIAKATKSMMEQKDERIRRTAELLTYIRTLKMYGWELLF 483
Query: 476 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 535
+SWLMKTRS EVKHLSTRKYLDAWCVFFWATTPTLFSL TFGL+ LMGHQLDAA VFTCL
Sbjct: 484 ASWLMKTRSLEVKHLSTRKYLDAWCVFFWATTPTLFSLCTFGLYTLMGHQLDAATVFTCL 543
Query: 536 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSN 594
ALFN+LISPLNSFPWVINGLIDAFIS RL+ +L C E+K LE+ N P+ SN L N
Sbjct: 544 ALFNNLISPLNSFPWVINGLIDAFISSGRLSNYLSCCEHKVALEKTGNYPTPSCSNNLEN 603
Query: 595 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 654
MAV + DA C+W ++++E +++L++++L +PKG LVAV+GEVGSGKS+LLN IL
Sbjct: 604 -----MAVTICDACCTWSSSDKKEFDLLLHKITLQVPKGCLVAVVGEVGSGKSALLNLIL 658
Query: 655 GEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
E+ L GS+ +GS+ YVPQVPWILSGTIRDNILFG ++P+ YS+ LKAC LD DISL
Sbjct: 659 EEVRLVSGSLSLTGSVTYVPQVPWILSGTIRDNILFGTEFNPRRYSDVLKACALDFDISL 718
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
M+GGDMA IGEKG+NLSGGQRARLALARA+Y GS+IYMLDDVLSAVDA VA IL+NAI+
Sbjct: 719 MMGGDMACIGEKGLNLSGGQRARLALARAIYCGSEIYMLDDVLSAVDAHVASSILNNAIL 778
Query: 775 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL 834
GP M Q+TRILCTHN+QAI AAD+VV MDKG+VKW+GS ++L VS Y S + + S
Sbjct: 779 GPLMNQQTRILCTHNIQAIYAADVVVEMDKGRVKWVGSPSNLTVSSYLALPSIDNLNGSS 838
Query: 835 HMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 894
+ K+ +R+ +S + +QE+D +++ + QE IE E RKEG+VEL VYKNYA F+GW
Sbjct: 839 EVHKKVIRSAVASETIE-EVQEQDHLNLLEAVQETIEAETRKEGKVELIVYKNYAAFAGW 897
Query: 895 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLV 954
FIT+ C SAI MQASRNGNDLWLSYWVDTTGSSQ +ST+FYLV+LC+FC NS LTLV
Sbjct: 898 FITIATCFSAIFMQASRNGNDLWLSYWVDTTGSSQKNFSTTFYLVILCLFCFVNSSLTLV 957
Query: 955 RAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1014
RAFSFA+G LRAA VH+ +L +++NA V F+DQTP GRILNRFSSDLY IDDSLPFILN
Sbjct: 958 RAFSFAYGGLRAAKVVHDQMLNRLINATVSFYDQTPTGRILNRFSSDLYTIDDSLPFILN 1017
Query: 1015 ILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIY 1074
ILLANFVGLLGIA+VLSYVQV FLLLL+PFW+IYSK+QF+YRSTSRELRRLDSVSRSPIY
Sbjct: 1018 ILLANFVGLLGIAIVLSYVQVLFLLLLLPFWYIYSKIQFYYRSTSRELRRLDSVSRSPIY 1077
Query: 1075 ASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS 1134
ASFTETL+G+STIRAFKSED+F+ +F +H+ LYQRTSYSE+TASLWLSLRLQLLAAFI+S
Sbjct: 1078 ASFTETLDGASTIRAFKSEDFFLFRFIQHITLYQRTSYSEVTASLWLSLRLQLLAAFIVS 1137
Query: 1135 FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLE 1194
F+A MAVIG+ +LP TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+
Sbjct: 1138 FVAVMAVIGAHKHLPINLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQ 1197
Query: 1195 YMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGR 1254
YMD+PQEE+ + +WP G I+FQNVT+RY PSLPAALHD++FTI GGTQVG++GR
Sbjct: 1198 YMDIPQEEVG--MLIEHNWPSHGEIQFQNVTLRYMPSLPAALHDVSFTISGGTQVGVIGR 1255
Query: 1255 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL 1314
TGAGKSSILNALFRL I GG+ILVD ++I +R LR + AVVPQSPFLF+ SLR NL
Sbjct: 1256 TGAGKSSILNALFRLNSITGGRILVDDVDISIVSLRHLRSQLAVVPQSPFLFKASLRANL 1315
Query: 1315 DPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1373
DPF DD IW+VL+KCHVKEEVEA+ GL+ VKESG SFSVGQRQL+CLARALLKSSK
Sbjct: 1316 DPFKEKDDADIWNVLKKCHVKEEVEALGGLDIEVKESGTSFSVGQRQLLCLARALLKSSK 1375
Query: 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1433
VLCLDECTAN+D QTAS LQNAI++EC+G TVITIAHRISTVLNMD ILILD G LVEQG
Sbjct: 1376 VLCLDECTANIDTQTASKLQNAIANECRGTTVITIAHRISTVLNMDNILILDQGILVEQG 1435
Query: 1434 NPQTLLQDECSVFSSFVRASTM 1455
NP LLQD+ S+FSSF RAS M
Sbjct: 1436 NPNVLLQDDSSLFSSFFRASKM 1457
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184186|ref|NP_178811.7| multidrug resistance-associated protein 11 [Arabidopsis thaliana] gi|330251033|gb|AEC06127.1| multidrug resistance-associated protein 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1841 bits (4768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 940/1439 (65%), Positives = 1134/1439 (78%), Gaps = 57/1439 (3%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDD-Q 189
Query: 198 EDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRS 257
+ + S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CWQ Q
Sbjct: 190 KRIEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCWQLQEC 249
Query: 258 CNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVL 317
N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 250 NNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK-------------- 295
Query: 318 AIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTF 377
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTF
Sbjct: 296 -----------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTF 344
Query: 378 MSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANL 437
MSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ L
Sbjct: 345 MSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVL 404
Query: 438 IANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 497
IA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLD
Sbjct: 405 IASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLD 464
Query: 498 AWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLID 557
AWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLID
Sbjct: 465 AWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLID 524
Query: 558 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
AFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W N EE
Sbjct: 525 AFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEE 573
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVP
Sbjct: 574 DYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVP 633
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
W+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR
Sbjct: 634 WLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRAR 693
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAAD 797
ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QAIS AD
Sbjct: 694 FALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCAD 753
Query: 798 MVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQ 855
M+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ + + ++
Sbjct: 754 MIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIK 804
Query: 856 EKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGND 915
E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGND
Sbjct: 805 EDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGND 864
Query: 916 LWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLL 975
LWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L+
Sbjct: 865 LWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALI 924
Query: 976 TKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV 1035
+K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV
Sbjct: 925 SKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQV 984
Query: 1036 FFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1095
FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++
Sbjct: 985 LFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEH 1044
Query: 1096 FMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTP 1155
F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +F TP
Sbjct: 1045 FVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTP 1104
Query: 1156 GLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPF 1215
GLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP
Sbjct: 1105 GLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPV 1164
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G
Sbjct: 1165 HGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSG 1224
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK
Sbjct: 1225 EILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVK 1284
Query: 1336 EEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N
Sbjct: 1285 AAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHN 1344
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453
ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1345 TISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1403
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298286923|sp|Q9SKX0.3|AB13C_ARATH RecName: Full=ABC transporter C family member 13; Short=ABC transporter ABCC.13; Short=AtABCC13; AltName: Full=ATP-energized glutathione S-conjugate pump 11; AltName: Full=Glutathione S-conjugate-transporting ATPase 11; AltName: Full=Multidrug resistance-associated protein 11 | Back alignment and taxonomy information |
|---|
Score = 1838 bits (4761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 940/1444 (65%), Positives = 1133/1444 (78%), Gaps = 61/1444 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDC-----NTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 252
+ S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 253 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 312
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 313 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 372
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 373 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 432
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 433 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 492
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 493 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 552
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 553 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 612
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 613 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 672
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 673 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 792
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 793 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 850
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 851 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 910
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 911 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 971 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1030
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1031 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1090
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1091 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1150
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1151 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1210
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1331 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1449
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSF
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSF 1405
Query: 1450 VRAS 1453
VRAS
Sbjct: 1406 VRAS 1409
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831764|ref|XP_002883764.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] gi|297329604|gb|EFH60023.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1732 bits (4485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 868/1236 (70%), Positives = 1010/1236 (81%), Gaps = 45/1236 (3%)
Query: 219 MNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 278
M G +KQL+FE+LL LP DMDP TC LL CWQ Q N + PSL+ +I YG+PY
Sbjct: 1 MKHGSVKQLEFENLLPLPPDMDPFTCCENLLRCWQLQECNNYSTPSLIWSISGVYGWPYF 60
Query: 279 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFH 338
LGLLKV ND IGFAGPL LN+LIK SF DTQY+F
Sbjct: 61 RLGLLKVFNDCIGFAGPLFLNRLIK-------------------------SFLDTQYTFR 95
Query: 339 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 398
LSK KLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VNL NS HD WSL
Sbjct: 96 LSKFKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVNLCNSLHDMWSL 155
Query: 399 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGE 458
P QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK KDERIR+TGE
Sbjct: 156 PLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMKLKDERIRKTGE 215
Query: 459 ILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 518
+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATTPTLFSL TFGL
Sbjct: 216 LLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATTPTLFSLCTFGL 275
Query: 519 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 578
FALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++FL C E+ +
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSKFLCCLEHSRDF 335
Query: 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638
I +GL+ S+D+AV ++DA+ +W N EE+ N+ + VSL +PKGS VAV
Sbjct: 336 S--------IDSGLT---SEDLAVFVEDASSTWSSNLEEDYNLTIKHVSLRVPKGSFVAV 384
Query: 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 698
IGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPWILSGTIR+NILFGK +D +S
Sbjct: 385 IGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWILSGTIRENILFGKPFDSKS 444
Query: 699 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 758
Y ETL AC LDVDISLM GGDMA IG+KGVNLSGGQRARLALARAVYHGSD+Y+LDDVLS
Sbjct: 445 YFETLSACALDVDISLMAGGDMACIGDKGVNLSGGQRARLALARAVYHGSDMYLLDDVLS 504
Query: 759 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818
AVD+QV WIL A++GP + +KTR++CTHN+QAIS ADM+VVMDKG+VKW G+ D+
Sbjct: 505 AVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVKWSGTVTDMPK 564
Query: 819 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 878
S+ F +N+FD N + K+ L +KD + +A +I+++E+RKEG
Sbjct: 565 SISPTFSLSNDFDMP--------SPNHLTKRKEPLSIKKDDLDEISEAADIVKLEERKEG 616
Query: 879 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL 938
RVE+TVY+NYA FSGWFI +VI +SA+LMQASRNGNDLWLSYWVD TG + YSTSFYL
Sbjct: 617 RVEVTVYRNYAAFSGWFIAIVILVSAVLMQASRNGNDLWLSYWVDKTGRGVSHYSTSFYL 676
Query: 939 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 998
+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH+ L++K++NAP FFDQTP GRILNRF
Sbjct: 677 MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHSALISKLINAPTQFFDQTPSGRILNRF 736
Query: 999 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058
SSDLY IDDSLPFILNILLANFVGLLGI VLSYVQV FLLLL+PFW+IYSKLQFFYRST
Sbjct: 737 SSDLYTIDDSLPFILNILLANFVGLLGIIAVLSYVQVLFLLLLLPFWYIYSKLQFFYRST 796
Query: 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118
SRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+A+F EH+ LYQRTSYSE+ AS
Sbjct: 797 SRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVARFIEHLTLYQRTSYSEIIAS 856
Query: 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
LWLSLRLQLL A I+ F+A MAV+GSRGN P +F TPGLVGLALSYAAP+VSLLG+FL+S
Sbjct: 857 LWLSLRLQLLGAMIVLFVAVMAVLGSRGNFPISFGTPGLVGLALSYAAPLVSLLGSFLTS 916
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1238
FTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP QGL+EF NVTMRY +LP AL+
Sbjct: 917 FTETEKEMVSIERVLQYMDVPQEEVSGRQSLSGKWPVQGLVEFHNVTMRYISTLPPALNH 976
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298
I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG+NI + P+R LR AV
Sbjct: 977 ISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCNGEILVDGININHLPIRKLRSHLAV 1036
Query: 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVG 1357
VPQSPFLF+GSLRDNLDP +++D +IW +LEKC VK EVE A GL++ VKESG S+SVG
Sbjct: 1037 VPQSPFLFQGSLRDNLDPLGLSEDWRIWEILEKCKVKAEVESAGGLDSNVKESGCSYSVG 1096
Query: 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417
QRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N IS+ECKG+TVITIAHRISTVL+
Sbjct: 1097 QRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISTECKGVTVITIAHRISTVLD 1156
Query: 1418 MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453
+D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1157 LDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1192
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204674|emb|CBI25172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1676 bits (4340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 853/1143 (74%), Positives = 948/1143 (82%), Gaps = 69/1143 (6%)
Query: 358 CLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAF 417
CL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKFAF
Sbjct: 87 CLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKFAF 146
Query: 418 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSS 477
VSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F S
Sbjct: 147 VSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLFMS 206
Query: 478 WLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLAL 537
WLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCLAL
Sbjct: 207 WLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCLAL 266
Query: 538 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS-NF 595
FN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S NF
Sbjct: 267 FNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQFNF 326
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSIL
Sbjct: 327 KLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSILK 386
Query: 656 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DISLM
Sbjct: 387 EMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDISLM 446
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
VGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI+G
Sbjct: 447 VGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAILG 506
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLH 835
P M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+G
Sbjct: 507 PLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVG------------------------ 542
Query: 836 MQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWF 895
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SGWF
Sbjct: 543 IRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSGWF 602
Query: 896 ITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFY----------------- 937
IT+VICLSAILMQASRNGNDLWLSYWVD TTGSS T+YSTSFY
Sbjct: 603 ITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVLLVLIKEEFVKSMVE 662
Query: 938 ------------------------LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973
LVVLCIFC+ NSFLTLVRAFSFAFG LRAAV+VHNT
Sbjct: 663 HEQFYVNVQCFLNEFEANGVSFFLLVVLCIFCVINSFLTLVRAFSFAFGGLRAAVQVHNT 722
Query: 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYV 1033
LL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFILNILLAN VGLLGIA+VLSYV
Sbjct: 723 LLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFILNILLANIVGLLGIAIVLSYV 782
Query: 1034 QVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE 1093
QV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSPI+ASFTETL+GSSTIRAFK E
Sbjct: 783 QVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSPIFASFTETLDGSSTIRAFKCE 842
Query: 1094 DYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFS 1153
D F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +ISF+A MAVIGSR +LP +
Sbjct: 843 DLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALVISFVAMMAVIGSRDSLPISLG 902
Query: 1154 TPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213
TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+YMD+PQEEL G QSLSP+W
Sbjct: 903 TPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQYMDIPQEELNGCQSLSPNW 962
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+GRTGAGKSSILNALFRLTPIC
Sbjct: 963 PSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGIIGRTGAGKSSILNALFRLTPIC 1022
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRDNLDPF ++DDLKIW LE+CH
Sbjct: 1023 KGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRDNLDPFRVSDDLKIWKTLERCH 1082
Query: 1334 VKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
VKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKSSKVLCLDECTAN+DAQT+S+L
Sbjct: 1083 VKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKSSKVLCLDECTANIDAQTSSVL 1142
Query: 1393 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452
QNAI +EC+GMTVITIAHRISTVL+MD ILILD G LVEQGNPQ LLQD S FS F +A
Sbjct: 1143 QNAILTECRGMTVITIAHRISTVLSMDNILILDRGILVEQGNPQVLLQDHSSRFSGFAKA 1202
Query: 1453 STM 1455
STM
Sbjct: 1203 STM 1205
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5001458|gb|AAD37023.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1603 bits (4151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 800/1130 (70%), Positives = 940/1130 (83%), Gaps = 34/1130 (3%)
Query: 328 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN 387
+SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VN
Sbjct: 46 RSFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVN 105
Query: 388 LANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMK 447
L NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK
Sbjct: 106 LCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMK 165
Query: 448 QKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 507
KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATT
Sbjct: 166 LKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATT 225
Query: 508 PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567
PTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++
Sbjct: 226 PTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSK 285
Query: 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 627
FL C E+ + I +G F S+D+AV ++DA+C+W N EE+ N+ + QVS
Sbjct: 286 FLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEEDYNLTIKQVS 334
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDN 687
L +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPW+LSGT+R+N
Sbjct: 335 LRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWLLSGTVREN 394
Query: 688 ILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747
ILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR ALARAVYHG
Sbjct: 395 ILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRARFALARAVYHG 454
Query: 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 806
SD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+Q + + M+VVMDKG+
Sbjct: 455 SDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQVSNLSTHMIVVMDKGK 514
Query: 807 VKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQEKDVVSVSD 864
V W GS D+ S+ F TNEFD S H+ K++ + + ++E V +S+
Sbjct: 515 VNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIKEDGVDEISE 565
Query: 865 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 924
A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGNDLWLSYWVD
Sbjct: 566 AAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGNDLWLSYWVDK 625
Query: 925 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984
TG +VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L++K++NAP
Sbjct: 626 TGKG----------MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALISKLINAPTQ 675
Query: 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV FLLLL+PF
Sbjct: 676 FFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQVLFLLLLLPF 735
Query: 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1104
W+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+ +F EH+
Sbjct: 736 WYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHL 795
Query: 1105 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1164
LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +F TPGLVGLALSY
Sbjct: 796 TLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSY 855
Query: 1165 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1224
AAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP GL+EF NV
Sbjct: 856 AAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPVHGLVEFHNV 915
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
TMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG NI
Sbjct: 916 TMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNI 975
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GL 1343
+ P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK VE+V GL
Sbjct: 976 SHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGGL 1035
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N ISSECKG+
Sbjct: 1036 DSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGV 1095
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453
TVITIAHRISTV+++D ILILD G LVEQG PQ LLQD+ S FSSFVRAS
Sbjct: 1096 TVITIAHRISTVVDLDSILILDRGILVEQGKPQHLLQDDSSTFSSFVRAS 1145
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5T3U5 | MRP7_HUMAN | No assigned EC number | 0.3928 | 0.8378 | 0.8170 | yes | no |
| P39109 | YCFI_YEAST | No assigned EC number | 0.3435 | 0.8391 | 0.8059 | yes | no |
| Q54JR2 | ABCC3_DICDI | No assigned EC number | 0.3418 | 0.8006 | 0.8250 | yes | no |
| Q9SKX0 | AB13C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6509 | 0.9505 | 0.9808 | yes | no |
| Q8R4P9 | MRP7_MOUSE | No assigned EC number | 0.3779 | 0.8646 | 0.8381 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | ATMRP11 | ATMRP11; ATPase, coupled to transmembrane movement of substances; member of MRP subfamily ; Pump for glutathione S-conjugates (By similarity) (1251 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT4G08455 | BTB/POZ domain-containing protein; BTB/POZ domain-containing protein; FUNCTIONS IN- protein bin [...] (243 aa) | • | 0.821 | |||||||
 | CYP705A32 | CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; m [...] (526 aa) | • | 0.786 | |||||||
 | AT1G12570 | glucose-methanol-choline (GMC) oxidoreductase family protein; glucose-methanol-choline (GMC) ox [...] (572 aa) | • | 0.716 | |||||||
 | HAG2 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone ac [...] (467 aa) | • | 0.677 | |||||||
 | AT1G77540 | H3/H4 histone acetyltransferase; Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT [...] (114 aa) | • | 0.655 | |||||||
 | AT2G20270 | glutaredoxin family protein; glutaredoxin family protein; FUNCTIONS IN- electron carrier activi [...] (179 aa) | • | 0.599 | |||||||
 | ABC1At | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa) | • | 0.597 | |||||||
 | EIF3K | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K); translation initiation factor; Encodes ini [...] (226 aa) | • | 0.510 | |||||||
 | PDR13 | PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; PDR13; FUNCTIONS IN [...] (1390 aa) | • | • | 0.451 | ||||||
 | AT5G44410 | FAD-binding domain-containing protein; FAD-binding domain-containing protein; FUNCTIONS IN- ele [...] (535 aa) | • | 0.435 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1455 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-177 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-104 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-94 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-75 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-72 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-70 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-68 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-66 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-63 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-63 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-60 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-60 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-59 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-56 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-56 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-55 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-55 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-54 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-53 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-53 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-52 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-51 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-50 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-49 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-47 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-46 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-45 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-45 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-44 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-44 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-44 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-42 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-42 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-41 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-40 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-38 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-38 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-38 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-36 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-35 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-35 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-35 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-34 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-34 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-34 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-33 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-32 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-31 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-31 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-31 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-30 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-29 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-28 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-28 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 9e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-27 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-26 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-26 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-26 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-26 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-26 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-25 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-25 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-25 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-25 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-25 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-25 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-25 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-24 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-24 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-24 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-24 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-24 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-23 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-23 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-23 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 9e-23 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-22 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-22 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-22 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-21 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 3e-21 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-21 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-21 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-20 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-20 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-20 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 7e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-19 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-19 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-19 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 4e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-19 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-18 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-18 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-18 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-18 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-18 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-17 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-17 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-17 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-17 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-17 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-17 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-17 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-16 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-16 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-16 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-16 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-16 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-16 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-16 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 5e-16 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-16 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-16 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-16 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-16 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-16 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-15 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-15 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-15 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 6e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-15 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-14 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-14 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-14 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-14 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 6e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 9e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-14 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 9e-14 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-13 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-13 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-13 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-13 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-13 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-13 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-13 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 7e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-13 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-13 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 6e-12 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-12 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 7e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-12 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-11 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-11 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-11 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-11 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 9e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 3e-10 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-10 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-10 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 5e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-09 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-09 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 5e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-09 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-08 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-08 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 9e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-07 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 4e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 6e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-06 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 7e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 5e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-04 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 8e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 9e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 0.001 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.002 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.002 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.003 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.003 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.004 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 809 bits (2091), Expect = 0.0
Identities = 432/1227 (35%), Positives = 675/1227 (55%), Gaps = 70/1227 (5%)
Query: 262 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIA 320
PSL + + +G ++ K ++D + F GP +L+ LI+F+ GY
Sbjct: 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGL 363
Query: 321 LGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 379
L + + L++ QY FH+ + +++++++M +Y+K L + + R + GEI MS
Sbjct: 364 LFVCACLQTLILHQY-FHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMS 422
Query: 380 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 439
VD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ +L++P+N +A
Sbjct: 423 VDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482
Query: 440 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499
MK KD RI+ EIL I+ LK+Y WE F + R E+K L YL A
Sbjct: 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542
Query: 500 CVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLID 557
F W TP L +L TF ++ + LDA F LALFN L PLN P VI+ ++
Sbjct: 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQ 602
Query: 558 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
A +S++RL FL ELE + I G N ++ + +AT +W
Sbjct: 603 ASVSLKRLRIFLS----HEELEPDSIERRTIKPGEGN------SITVHNATFTW----AR 648
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G +H GS+AYVPQ
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA 708
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
WI + ++R+NILFGK + + Y + L+AC L D+ ++ GD IGEKGVNLSGGQ+ R
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 796
++LARAVY +DIY+ DD LSAVDA V + I + I +L+ KTRIL TH + +
Sbjct: 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828
Query: 797 DMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 854
D+++VM G++ +GS +L ++ F T D + S K+ L
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKL 888
Query: 855 QEKDVVSVSDDAQE-------------------------------------IIEVEQRKE 877
E + + V+D + ++E ++ +
Sbjct: 889 IE-NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQT 947
Query: 878 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFY 937
G+VEL+VY +Y K G FIT + + S ++ WLS W D + T+ +TS
Sbjct: 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR 1007
Query: 938 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 997
L V + F + + + G ++A+ +H LL + +P+ FF++TP G ++NR
Sbjct: 1008 LSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNR 1067
Query: 998 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057
FS +L +D +P ++ + + + ++G +V+ +++ P +Y +Q FY +
Sbjct: 1068 FSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127
Query: 1058 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1117
+SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A
Sbjct: 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187
Query: 1118 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1177
+ WL++RL+ + I+ F A AVI R +L + GLVGL++SY+ + L +
Sbjct: 1188 NRWLAVRLECVGNCIVLFAALFAVIS-RHSL-----SAGLVGLSVSYSLQVTFYLNWLVR 1241
Query: 1178 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEFQNVTMRYKPSLPAA 1235
+E E +V++ER+ EY + +E Q +P WP +G +EF+N +RY+ L
Sbjct: 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV 1301
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLNI + DLR +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1353
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L+ E G +
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 1414 TVLNMDEILILDHGHLVEQGNPQTLLQ 1440
T+++ +++LD G + E G P LLQ
Sbjct: 1482 TIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 800 bits (2069), Expect = 0.0
Identities = 432/1259 (34%), Positives = 698/1259 (55%), Gaps = 41/1259 (3%)
Query: 212 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICC 271
F + +M G + L +D+ L T T + CW + P L+RA+
Sbjct: 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKK--PKPWLLRALNN 297
Query: 272 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFF 331
+ G + G K+ ND F GPLLLN L++ +Q G GY+ A ++ + +L
Sbjct: 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLC 357
Query: 332 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 391
+ QY ++ ++ +LRS+++ +++K L + R +F+ G+I M+ D + +
Sbjct: 358 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ 417
Query: 392 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 451
H WS PF+I +A+ LLY Q+ A + G + +L+ P+ +I + + T++ +++ D+
Sbjct: 418 LHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477
Query: 452 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 511
RI E+L + T+K Y WE F S + R E+ + L A+ F + P L
Sbjct: 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537
Query: 512 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 571
++ +FG+F L+G L A FT L+LF L PL P +I ++A +S++RL L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-- 595
Query: 572 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 631
E N P + GL A+ +++ SW E L+ ++L +P
Sbjct: 596 --LAEERVLLPNPP--LEPGLP-------AISIKNGYFSWDSKAERP---TLSNINLDVP 641
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 690
GSLVA++G G GK+SL++++LGE+ + S+ G++AYVPQV WI + T+RDNILF
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701
Query: 691 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 750
G +DP+ Y + L D+ L+ GGD+ IGE+GVN+SGGQ+ R+++ARAVY SD+
Sbjct: 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
Query: 751 YMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWI 810
Y+ DD LSA+DA V R + I + KTR+L T+ + +S D ++++ +G +K
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
Query: 811 GSSADLAVS------LYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVS--- 861
G+ +L+ + L E+ ++ + ++ AN +KD S
Sbjct: 821 GTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880
Query: 862 VSDDAQEIIEVEQRKEGRVELTVYKNY-AKFSGWFITLVICLSAILMQASRNGNDLWLSY 920
+ +I+ E+R+ G V V + Y G ++ +++ L +L + R + WLS
Sbjct: 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940
Query: 921 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980
W D + FY ++ + +TL+ ++ SL AA ++H+ +L I+
Sbjct: 941 WTDQGTPKT--HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1040
AP+ FF P GRI+NRF+ DL ID ++ +N+ L LL V++ V L
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 1041 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1100
++P ++ +Y+ST+RE++RLDS++RSP+YA F E LNG STIRA+K+ D MA+
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAEI 1117
Query: 1101 KEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLV 1158
+ R + ++++ WL++RL+ L +I A+ AV+ R A F++ +
Sbjct: 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFAS--TM 1175
Query: 1159 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS--LSPDWPFQ 1216
GL LSYA I SLL L + E + ++ERV Y+D+P E ++ P WP
Sbjct: 1176 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSS 1235
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G I+F++V +RY+P LP LH ++F I +VGIVGRTGAGKSS+LNALFR+ + G+
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
IL+DG +I + DLR ++PQ+P LF G++R NLDPF+ ++D +W LE+ H+K+
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKD 1355
Query: 1337 EVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+ ++GL+ V E+G +FSVGQRQL+ LARALL+ SK+L LDE TA VD +T +++Q
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453
I E K T++ IAHR++T+++ D IL+LD G +VE P+ LL +E S FS V+++
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 742 bits (1917), Expect = 0.0
Identities = 430/1263 (34%), Positives = 707/1263 (55%), Gaps = 52/1263 (4%)
Query: 212 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW--QAQRSCNCTNPSLVRAI 269
F + +M G K + +D+ L T + CW +++R P L+RA+
Sbjct: 240 FSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRP----KPWLLRAL 295
Query: 270 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKS 329
+ G + G+ K+ +D F GP++L+ L++ +Q+G GYV A +
Sbjct: 296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGV 355
Query: 330 FFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA 389
++QY ++ ++ +LRS+++ I+ K L + R F+ G++ ++ D + +A
Sbjct: 356 LCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA 415
Query: 390 NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQK 449
H WS PF+I V++ LLY Q+ A + G I LLIP+ I + T++ ++
Sbjct: 416 EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWT 475
Query: 450 DERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 509
D+R+ EIL + T+K Y WE+ F S + R+ E+ + L A+ F + P
Sbjct: 476 DKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPV 535
Query: 510 LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 569
+ +L +FG+F L+G L A FT L+LF L SPLN P +++ +++A +S++R+ L
Sbjct: 536 VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELL 595
Query: 570 GCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLC 629
E A N P + G A+ +++ SW + + L+ ++L
Sbjct: 596 ----LSEERILAQNPP--LQPGAP-------AISIKNGYFSW---DSKTSKPTLSDINLE 639
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGSIAYVPQVPWILSGTIRD 686
+P GSLVA++G G GK+SL++++LGE L+H S+ GS+AYVPQV WI + T+R+
Sbjct: 640 IPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAETSSVVIRGSVAYVPQVSWIFNATVRE 697
Query: 687 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746
NILFG +++ + Y + L D+ L+ G D+ IGE+GVN+SGGQ+ R+++ARAVY
Sbjct: 698 NILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757
Query: 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806
SDIY+ DD LSA+DA VA + ++ M + KTR+L T+ + + D ++++ +G
Sbjct: 758 NSDIYIFDDPLSALDAHVAHQVF-DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGM 816
Query: 807 VKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANK-----QILLQEKDVV 860
+K G+ A+L+ SG + + M QE+ TN + K I + E+++
Sbjct: 817 IKEEGTFAELS---KSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLG 873
Query: 861 SVSDDAQE---IIEVEQRKEGRVELTVYKNYAK-FSGWFITLVICLSAILMQASRNGNDL 916
S + +++ E+R+ G + V Y K G ++ +++ + + + R +
Sbjct: 874 STKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSST 933
Query: 917 WLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLT 976
WLS W D S+ YS FY+VV + +T +F SL AA ++H+ +L
Sbjct: 934 WLSIWTDQ--STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLN 991
Query: 977 KIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVF 1036
I+ AP+LFF P GR++NRFS D+ ID ++ ++N+ + LL ++ V
Sbjct: 992 SILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTI 1051
Query: 1037 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYF 1096
L ++P ++ +Y+STSRE+RRLDSV+RSPIYA F E LNG S+IRA+K+ D
Sbjct: 1052 SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR- 1110
Query: 1097 MAKFKEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-RGNLPATFST 1154
MAK + R + + +++ WL++RL+ L +I AT AV+ + A F++
Sbjct: 1111 MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAS 1170
Query: 1155 PGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--D 1212
+GL LSY I +LL L ++ E + S+ERV Y+D+P E ++ P
Sbjct: 1171 --TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSG 1228
Query: 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
WP +G I+F++V +RY+P LP LH ++F + +VG+VGRTGAGKSS+LNALFR+ +
Sbjct: 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G+I++D ++ + DLR +++PQSP LF G++R N+DPF ++D +W LE+
Sbjct: 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348
Query: 1333 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
H+K+ ++ GL+ V E G +FSVGQRQL+ LARALL+ SK+L LDE TA+VD +T S
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 1391 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450
++Q I E K T++ IAHR++T+++ D+IL+L G ++E +PQ LL + S F V
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 1451 RAS 1453
++
Sbjct: 1469 HST 1471
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 570 bits (1470), Expect = e-177
Identities = 313/888 (35%), Positives = 477/888 (53%), Gaps = 62/888 (6%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 675
E E V+L VS+ +P+G L V+G GSGKS+LL S+L + ++ G + A SIAYVPQ
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 676 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735
WI++ T+R NILF D ++ ++ L+ D++ + GG IGEKGVNLSGGQ+
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 795
AR++LARAVY D+Y+LDD LSA+DA V ++ +G + KTR+L TH V +
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPR 847
Query: 796 ADMVVVMDKGQVKWIGSSADLA-VSLYSGFW-------------STNEFDTSLHMQKQEM 841
AD VV + G+V++ GSSAD SLY+ + E +
Sbjct: 848 ADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAV 907
Query: 842 RTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG----WFIT 897
A ++ + D ++ A ++ E++ G V + Y Y +F G
Sbjct: 908 DHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFV 967
Query: 898 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 957
L L+ S + +WLS W +T S K S + YL V + + ++ F
Sbjct: 968 LATFAVTELVTVS---SGVWLSMW--STRS--FKLSAATYLYVY-LGIVLLGTFSVPLRF 1019
Query: 958 SFAFGSLR-AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1016
++ ++R + +H LL + + FFD TP GRILNRFS D+ ++D++LP L
Sbjct: 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL 1079
Query: 1017 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1076
L + +V S Q F L+ LVP ++Y +L FY S +RE+RR+ SV++SP++
Sbjct: 1080 LQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTL 1139
Query: 1077 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFI 1136
E L GS+TI A+ M + + + SY E A+ WL +R++ L+ +++ I
Sbjct: 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVI 1199
Query: 1137 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196
A + VIG+ L AT GLV L+L+ A + L + E +M S+ER+L Y
Sbjct: 1200 ALIGVIGTM--LRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257
Query: 1197 D-VPQEEL--------------------CGYQSLSPDWPFQ--------GLIEFQNVTMR 1227
D VP E++ G + P P G + F+ V MR
Sbjct: 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317
Query: 1228 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1287
Y+ LP L ++F I +VGIVGRTG+GKS++L R+ +CGG+I V+G I
Sbjct: 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLET 1345
+R+LR +F+++PQ P LF+G++R N+DPF ++W+ LE ++E V E+ G+++
Sbjct: 1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDS 1437
Query: 1346 FVKESGISFSVGQRQLICLARALLK-SSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
V E G ++SVGQRQL+C+ARALLK S + +DE TAN+D +Q + S T
Sbjct: 1438 RVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYT 1497
Query: 1405 VITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452
VITIAHR+ TV D+I+++DHG + E G+P+ L+ + S+F S V A
Sbjct: 1498 VITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEA 1545
|
Length = 1560 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 330 bits (850), Expect = e-104
Identities = 115/221 (52%), Positives = 162/221 (73%), Gaps = 2/221 (0%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV++RY+P+LP L +I+F+I+ G +VGIVGRTG+GKSS+L ALFRL + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
IL+DG++I + DLR R +++PQ P LF G++R NLDPF D ++W LE+ +KE
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1337 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
VE++ GL+T V+E G + SVGQRQL+CLARALL+ SK+L LDE TA+VD +T +++Q
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435
I K TV+TIAHR+ T+++ D IL+LD G +VE +P
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (834), Expect = e-102
Identities = 107/205 (52%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Query: 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 661
+ ++DA+ +W + E+E + L ++L +PKG LVA++G VGSGKSSLL+++LGE+
Sbjct: 1 ISVEDASFTW-DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59
Query: 662 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
GS+ GSIAYV Q PWI +GTIR+NILFGK +D + Y + +KAC L+ D+ ++ GD+
Sbjct: 60 GSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
IGEKG+NLSGGQ+ R++LARAVY +DIY+LDD LSAVDA V R I N I+G + K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 782 TRILCTHNVQAISAADMVVVMDKGQ 806
TRIL TH +Q + AD +VV+D G+
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = 7e-94
Identities = 141/524 (26%), Positives = 263/524 (50%), Gaps = 18/524 (3%)
Query: 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 996
L++L + + L ++++ + + + L K++ P+ FFD+ G +++
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 997 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQF 1053
R ++D+ + + + +L ++ + + L+G V+L + LLL++P + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL---VLS 170
Query: 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYS 1113
SR+L R + + A E+L+G I+AF +ED + +F+E +R +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 1114 ELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1173
L+ + LL++ + + T G + + Y +++ +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL----TVGALAAFILYLLRLLTPIL 286
Query: 1174 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP 1233
+ ++ + ER+ E +D E P G IEF+NV+ Y P
Sbjct: 287 QLGEVVSLLQRASAAAERLFELLDEEPEVE---DPPDPLKDTIGSIEFENVSFSYPGKKP 343
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
L DI+F+IE G +V IVG +G+GKS+++ L RL G+IL+DG++I + + LR
Sbjct: 344 V-LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402
Query: 1294 GRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKES 1350
R +V Q P LF G++R+N+ + D +I L+ + E + + G +T V E
Sbjct: 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER 462
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1410
G++ S GQRQ + +ARALL++ +L LDE T+ +D +T +++Q+A+ KG T + IAH
Sbjct: 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
Query: 1411 RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454
R+ST+ N D I++LD+G +VE+G + LL +++ +A
Sbjct: 523 RLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 265 bits (679), Expect = 3e-75
Identities = 154/529 (29%), Positives = 256/529 (48%), Gaps = 32/529 (6%)
Query: 929 QTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 987
ST L L + +F + L L+R + A R +++ ++ P+ +F+
Sbjct: 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 988 QTPGGRILNRFSSDLYMIDDSLP-FILNILLANFVGLLGIAVVLSY-------VQVFFLL 1039
+ G I++R +L I + L IL +++ L+ +AV+ Y V L
Sbjct: 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305
Query: 1040 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099
++ Q R +R+L + + ET+ G T++A +E F ++
Sbjct: 306 NVLITLIF----QPLLRRKTRKLIEESAE----QQSFLVETIKGIETVKALAAEPRFRSQ 357
Query: 1100 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV- 1158
+ + + +L L+ LL +S + + G+ L + LV
Sbjct: 358 WDNRLAKQVNIGFKTEKLALILNTIKSLL--QQLSSVLIL-WFGAILVLEGELTLGQLVA 414
Query: 1159 --GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216
LA + +PI L + F + + V+LER+ + +D P E+ G ++L Q
Sbjct: 415 FNMLAGYFISPITRLS-QLWTDFQQAK---VALERLGDILDTPPEQ-EGDKTLIHLPKLQ 469
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV+ RY P P L D++ I G +V IVGR+G+GKS++L L L G+
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVK 1335
IL+DG+++ + + LR + V Q PFLF GS+R+N+ + + I +
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
E +E + G +T V E G + S GQRQ + LARALL K+L LDE T+ +D +T +I+
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
+ +G TVI IAHR+ST+ + D I++LD G +VEQG+ + LL
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQG 698
|
Length = 709 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 240 bits (613), Expect = 2e-72
Identities = 96/223 (43%), Positives = 141/223 (63%), Gaps = 16/223 (7%)
Query: 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
WP G IE +N+++RY P LP L +++F ++ G ++GIVGRTGAGKS+++ ALFR
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G+I +DG++I P+ DLR ++PQ P LF G++R NLDPF D +I+ L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
V E G++ S GQRQL+CLARALLK +VL LDE TA++D T +++
Sbjct: 119 --------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 1393 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435
Q I E T++TIAHR+ T+++ D+IL++D G + E +P
Sbjct: 165 QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 1e-70
Identities = 167/542 (30%), Positives = 286/542 (52%), Gaps = 31/542 (5%)
Query: 933 STSFYLVVLCIFCMFNSFLTL--VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTP 990
TS Y + +S L L R L + ++H +L ++ AP+ +
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 991 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1050
GRILNRF+ D+ +IDD LP L + + +LG V+S +Q + + +P I+
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 1051 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRT 1110
L+ ++ TS++L++L+S +RSPI++ +L G TIRAF + YF F + + L+
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 1111 SYSELTASLWLSLRLQLLAAFIISFIA-TMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169
+ L+ W +R+ ++ F+ FIA T IG+ + G VG+ L+ A I+
Sbjct: 1101 WFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGTNQD------GEGEVGIILTLAMNIL 1152
Query: 1170 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE----------------LCGYQSLSPDW 1213
S L ++S + + M S+ RV +++D+PQEE + W
Sbjct: 1153 STLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCW 1212
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P G ++ Q +T +Y + A L D++F++EGG +VG++GRTG+GKS++L+AL RL
Sbjct: 1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST- 1271
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
G+I +DG++ + ++ R F V+PQ F+F G+ R NLDP+ D +IW V E+
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVG 1331
Query: 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
+K +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T I
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
++ + TVI HR+ +L + L+++ + + + Q LL +E S+F +
Sbjct: 1392 IRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAMS 1450
Query: 1452 AS 1453
A+
Sbjct: 1451 AA 1452
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 6e-68
Identities = 185/667 (27%), Positives = 310/667 (46%), Gaps = 87/667 (13%)
Query: 198 EDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRS 257
E N S + F ++ +G ++L+ D+ +P+ +L W + +
Sbjct: 7 EKANFLSKLF----FWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA 62
Query: 258 CNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD---- 313
NP L+ A+ + + ++ G+L ++ PLLL ++I S
Sbjct: 63 SAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRII-----ASYDPFNAPE 117
Query: 314 ---GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAER--SE 368
Y LA+ L L I+++ F L L +++R ++ ++IY+K L +L+ R +
Sbjct: 118 REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL--KLSSRVLDK 175
Query: 369 FSDGEIQTFMSVDT---DRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425
S G++ + +S + D + LA H W P Q+ + + L++ ++ GL I
Sbjct: 176 ISTGQLVSLLSNNLNKFDEGLALA---HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLI 232
Query: 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSS 485
LL + + +K + ER+ T EI+ +I+++K Y WE+ + R
Sbjct: 233 LLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQD 292
Query: 486 EVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAM----VFT----CLAL 537
E+K TRK A+ +F+++ FS F +++ + L + +FT C+ L
Sbjct: 293 ELK--LTRKI--AYLRYFYSSA-FFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVL 347
Query: 538 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNS 597
++ FP I D+ +I ++ FL EYK LE +N
Sbjct: 348 RMTVT---RQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLE---------------YNL 388
Query: 598 KDMAVIMQDATCSW------------YCNNEEEQ----------------NVVLNQVSLC 629
V M + T SW N +Q VL +S
Sbjct: 389 TTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFK 448
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 689
L KG L+AV G GSGKSSLL I+GE+ + G I SG I++ PQ WI+ GTI+DNI+
Sbjct: 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNII 508
Query: 690 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 749
FG +YD Y+ +KAC L+ DI+L D +GE G+ LSGGQRAR++LARAVY +D
Sbjct: 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDAD 568
Query: 750 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 809
+Y+LD + +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 569 LYLLDSPFTHLDVVTEKEIFESCLC-KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF 627
Query: 810 IGSSADL 816
G+ ++L
Sbjct: 628 YGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 2e-66
Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 4/227 (1%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV Y P L DINF+I+ G V IVG TGAGK++++N L R GQ
Sbjct: 1 GEIEFENVNFSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-CHVK 1335
IL+DG++I + + LR VV Q FLF G++ +N+ N + K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ + + G +T + E+G + S G+RQL+ +ARA+L+ K+L LDE T+N+D +T ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
A+ KG T I IAHR+ST+ N D+IL+LD G ++E+G LL
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 3e-63
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 39/210 (18%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+NV+ Y L D++ TI+ G +V IVG +G+GKS++L L RL G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG+++ + + LR A VPQ PFLF G++R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
S GQRQ I +ARALL+ +L LDE T+ +D +T +++ A+ +
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1399 ECKGMTVITIAHRISTVLNMDEILILDHGH 1428
KG TVI IAHR+ST+ + D I++LD G
Sbjct: 142 LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 228 bits (584), Expect = 7e-63
Identities = 159/537 (29%), Positives = 267/537 (49%), Gaps = 36/537 (6%)
Query: 922 VDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981
+DT G + + + + +C+ + +S +R SF + R +++ L ++
Sbjct: 188 IDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ 247
Query: 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV---GLLGIAVVLSYVQVFFL 1038
+ FFD+ G + +R SSD + SL +N+LL N V GLLG + LS
Sbjct: 248 DLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 1039 LLLVPFWFIYSK-LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1097
L+ +P F+ K Y+ S EL+ ++V+++ A E L+G T+R+F +E+
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEA 363
Query: 1098 AKFK---EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG---SRGNLPAT 1151
++FK E + + LW + L +L ++ + V+ S GNL +
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL-VS 422
Query: 1152 FSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLS 1210
F L Y + + ++ + + + E+V EY+D P L G +L+
Sbjct: 423 F---------LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLA 471
Query: 1211 PDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268
P +GLIEFQ+V+ Y +P +P L + FT+ G V +VG +G+GKS++ L
Sbjct: 472 PLN-LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
Query: 1269 LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWS 1327
L GGQ+L+DG+ ++ L + A+V Q P LF GS+R+N+ D +I +
Sbjct: 530 LYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMA 589
Query: 1328 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ + + + G +T V E G S GQ+Q I +ARAL++ +VL LDE T+ +D
Sbjct: 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Query: 1386 AQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
A+ +LQ S TV+ IAHR+STV D+IL+L G +VE G + L++D+
Sbjct: 650 AECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 1e-60
Identities = 104/238 (43%), Positives = 151/238 (63%), Gaps = 2/238 (0%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G I+ ++ +RY+ +L L + I+ G +VGI GRTG+GKSS+ A FR+ I G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
I++DG++I P+ LR R +++ Q P LF GS+R NLDP D ++W LE +K
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1337 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
V+++ GL+ V E G +FSVGQRQL CLARA ++ S +L +DE TA++D T +ILQ
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452
+ + TV+TIAHR+ST+L+ D +L+L G LVE P+ LL E VF+S VR
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 2e-60
Identities = 155/585 (26%), Positives = 269/585 (45%), Gaps = 51/585 (8%)
Query: 889 AKFSGWFITLVICLSAILM--QASRNGNDLWLSYWVDTTGSSQ--TKYSTSFYLVVLCI- 943
+ + L+I +A L A R D S SS +Y +V L +
Sbjct: 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFS-----KDSSGLLNRYFAFLLVVALVLA 72
Query: 944 ---FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1000
F L +R AV H +++ FFD+ G +++R ++
Sbjct: 73 LGTAARFYLVTWLGERVV---ADIRRAVFAH------LISLSPSFFDKNRSGEVVSRLTT 123
Query: 1001 DLYMIDDSLPFILNILLAN---FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057
D ++ + L++ L N +G L + + S +LL VP + + F
Sbjct: 124 DTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPL--VLLPILLF--- 178
Query: 1058 TSRELRRL-----DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY 1112
R +R+L D ++ + YA ETL T++AF ED ++F V +
Sbjct: 179 -GRRVRKLSRESQDRIADAGSYAG--ETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235
Query: 1113 SELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1172
+ L+ + +L + I + +G+ + S G +G + YA + +
Sbjct: 236 QRIRTRALLTAIVIVL---VFGAIVGVLWVGAHDVIAGKMS-AGTLGQFVFYAVMVAGSI 291
Query: 1173 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KP 1230
G + E ++ + ER++E + + + P +G IEF+ V Y +P
Sbjct: 292 GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARP 351
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
PA L +N T+ G V +VG +GAGKS++ L R G+IL+DG+++
Sbjct: 352 DQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA 410
Query: 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETF 1346
+LR R A+VPQ P LF S+ +N+ + D D ++ + H E + A+ G +T+
Sbjct: 411 ELRARMALVPQDPVLFAASVMENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406
+ E G++ S GQRQ I +ARA+LK + +L LDE T+ +DA++ ++Q A+ + KG T +
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTL 529
Query: 1407 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
IAHR++TVL D I+++D G +V QG L+ + +++ R
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA-KGGLYARLAR 573
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 5e-59
Identities = 140/520 (26%), Positives = 248/520 (47%), Gaps = 45/520 (8%)
Query: 938 LVVLCIFCMFNS--FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
L VL C F S L+ V S + + + K++ PV FFD+ P G +L
Sbjct: 63 LAVLRGICSFVSTYLLSWV--------SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 996 NRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1052
+R + D + + +L+ +GL + + S+ +++++P L
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV------LS 168
Query: 1053 FFYRSTSRELRRLDS---VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109
R S+ LRR+ S + ETL G ++ F + Y +F +R
Sbjct: 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 1110 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169
+ +A S QL+A+ ++ + + + + + T G + A I
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAVV--LFIALFQAQAGSL--TAG------DFTAFIT 278
Query: 1170 SLLGNF--LSSFTET----EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1223
+++ L S T ++ + + E + +D P E+ G +++ +G +EF+N
Sbjct: 279 AMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER---ARGDVEFRN 335
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283
VT RY AL I+ IE G V +VGR+G+GKS+++N + R GQIL+DG +
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAV 1341
+ + + LR + A+V Q LF ++ +N+ D +I L + ++ V+ +
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455
Query: 1342 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
GL+T + E+G+ S GQRQ + +ARALLK + +L LDE T+ +D ++ ++Q A+
Sbjct: 456 PLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439
+G T + IAHR+ST+ D I+++D G +VE+G LL
Sbjct: 516 MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 5e-56
Identities = 140/459 (30%), Positives = 220/459 (47%), Gaps = 59/459 (12%)
Query: 1004 MIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL-QFFYRSTSREL 1062
+ID LPF L LL + ++G +V + L+ +P + L Q + E
Sbjct: 267 LID--LPFALLFLLV--IAIIGGPLV------WVPLVAIPLILLPGLLLQRPLSRLAEES 316
Query: 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1122
R S R A E+L+G TI+A +E F ++ E V A
Sbjct: 317 MRE-SAQR---NAVLVESLSGLETIKALNAEGRFQRRW-EQTV--------AALARS--G 361
Query: 1123 LRLQLLAAFIISF------IATMAVI--G----SRGNLPATFSTPGLVG---LALSYAAP 1167
L+ + L+ +F + ++A++ G S G L + GL+ L+ AP
Sbjct: 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL----TMGGLIACVMLSGRALAP 417
Query: 1168 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1227
+ L G L+ + + + + SL+ E M +P E G + L QG IEF+NV+
Sbjct: 418 LGQLAG-LLTRYQQAKTALQSLD---ELMQLPVERPEGTRFLHRP-RLQGEIEFRNVSFA 472
Query: 1228 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1287
Y AL +++ TI G +V I+GR G+GKS++L L L G +L+DG++I
Sbjct: 473 YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVE--AVG 1342
DLR VPQ P LF G+LRDN+ P+ DD +I E V E V G
Sbjct: 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPDG 590
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402
L+ + E G S S GQRQ + LARALL+ +L LDE T+ +D ++ ++ + G
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1403 MTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
T++ + HR S +L++ D I+++D+G +V G +L+
Sbjct: 651 KTLVLVTHRTS-LLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 9e-56
Identities = 135/500 (27%), Positives = 231/500 (46%), Gaps = 42/500 (8%)
Query: 965 RAAVKVHNTL----LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDS----LPFILNIL 1016
RAA KV +L L K+ F Q P G + ++ LP +
Sbjct: 66 RAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125
Query: 1017 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1076
+ + +L ++ LL+ P ++ L + ++ +++R +
Sbjct: 126 IVPLL-ILIAIFFFNWAAALILLITAPLIPLFMIL-VGLAAKDASEKQFSALAR--LSGH 181
Query: 1077 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF- 1135
F + L G T+RAF + + ++ + + T S+ LR+ L++ ++ F
Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRK-----DSEDFRKATMSV---LRIAFLSSAVLEFF 233
Query: 1136 ----IATMAV-IGSR----GNLPATFSTPGLVGLALS--YAAPIVSLLGNFLSSFTETEK 1184
IA +AV IG R G+L T GL L L+ + P+ LG+F F
Sbjct: 234 AYLSIALVAVYIGFRLLGEGDL--TL-FAGLFVLILAPEFFQPL-RDLGSF---FHAAAA 286
Query: 1185 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIE 1244
+ +++ ++ P + I +N++ RY P AL D+N TI+
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIK 345
Query: 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1304
G +VG +GAGKS++LN L G+I V+G+++ + R + + V Q+P+
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 1305 LFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLI 1362
LF G++R+N+ + + I + L++ + E V GL+T + E G S GQ Q +
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465
Query: 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1422
LARALL + +L LDE TA++DA+T I+ A+ K TV+ I HR+ + D I+
Sbjct: 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIV 525
Query: 1423 ILDHGHLVEQGNPQTLLQDE 1442
+LD+G LVEQG + L + +
Sbjct: 526 VLDNGRLVEQGTHEELSEKQ 545
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-55
Identities = 112/459 (24%), Positives = 211/459 (45%), Gaps = 18/459 (3%)
Query: 992 GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW----FI 1047
G +LNR +D+ +D+ ++ + V + + + LS+ + LLL I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1107
L FYR+ + L R+ + + FT+ + G + + F +ED + + +
Sbjct: 175 IPTL--FYRAGRKFGAHLAQ-GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 1108 QRTSYSELTASLWLSLRLQLLAAFIISF-IATMAVIGSRGNLPATFSTPGLVGLALSYAA 1166
+ + + L L+A ++ + MA G L + L+ + +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALL-VIFAALE 290
Query: 1167 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1226
L +F + + S R+ + +D E + + +E +NV+
Sbjct: 291 AFEPLAP---GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT---GQALELRNVSF 344
Query: 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1286
Y AL + N T+ G +V I+GR+G+GKS++L L G I ++G+ I +
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 1287 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEA--VGL 1343
+ LR +V+ Q LF G+LRDNL + + D ++W+ L++ +++ +E+ GL
Sbjct: 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
T++ E G S G+R+ + LARALL + + LDE T +D T + + +G
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGK 524
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
T++ + HR+ + MD I++LD+G ++E+G LL +
Sbjct: 525 TLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 4e-55
Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 3/227 (1%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+EF+NVT RY P L DI+ I G V +VG +G+GKS+++N + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1337
+DG ++ + + LR + +V Q FLF ++ +N+ ++ + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1338 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + G +T + E G+ S GQRQ I +ARALLK +L LDE T+ +D ++ ++Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1396 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
+ K T IAHR+ST+ N D I++L+ G +VE+G + LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 1e-54
Identities = 88/238 (36%), Positives = 132/238 (55%), Gaps = 28/238 (11%)
Query: 1219 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
IEF+NV+ RY PS P L ++ TI G V +VG +G GKS++++ L R G+
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
IL+DG++I + +R LR + +V Q P LF+G++ +N+ + D +E
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDA----------TDEE 108
Query: 1337 EVEAV--------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
EA G +T V E G S GQ+Q I +ARALL++ K+L LDE T+
Sbjct: 109 VEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
+DA++ ++Q A+ KG T I IAHR+ST+ N D I +L +G +VEQG L+
Sbjct: 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 4e-53
Identities = 122/568 (21%), Positives = 229/568 (40%), Gaps = 47/568 (8%)
Query: 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 341
LL +++ + PLL+ ++I L G L L + L L ++L S+ S+
Sbjct: 21 LLLLLSALLSLLLPLLIGRIIDALLADLGEL--LELLLLLLLLALLGGVLRALQSYLGSR 78
Query: 342 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN-LANSFHDAWSLPF 400
L K+ + + +++K L + L+ + G++ + ++ D + N ++ ++
Sbjct: 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSIL 138
Query: 401 Q-IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 459
IG + L + A + L + +L + + +A + ++ + E R E
Sbjct: 139 LLIGSLVLLFSLSWRLALILLLILPLLALVL-SLLARKSRKLSRRVREALGELNARLLES 197
Query: 460 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP----TLFSLFT 515
L+ IR +K +G E + + + + + +
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRR--ANLRASRLEALLAPLMLLLSSLGTVLVLA 255
Query: 516 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 575
G F ++ L + + L++P+ V++ L A + RL L
Sbjct: 256 LGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL------ 309
Query: 576 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSL 635
+ + + ++ ++ + S+ + VL +S + G
Sbjct: 310 -------DEEPEVEDPPDPLKDTIGSIEFENVSFSY-----PGKKPVLKDISFSIEPGEK 357
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSG 682
VA++G GSGKS+L+ +L T G I G I V Q P + SG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 683 TIRDNILFGKNYDPQSY-SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
TIR+NI G+ E LK I+ + G +GE+GVNLSGGQR RLA+A
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RA+ I +LD+ SA+D + I + + +T ++ H + I AD ++V
Sbjct: 478 RALLRNPPILILDEATSALDTETEALIQDA--LKKLLKGRTTLIIAHRLSTIKNADRIIV 535
Query: 802 MDKGQVKWIGSSADLAV--SLYSGFWST 827
+D G++ G+ +L LY+ +
Sbjct: 536 LDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 4e-53
Identities = 147/531 (27%), Positives = 237/531 (44%), Gaps = 57/531 (10%)
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 994
+ ++ + IF L +R + FA + R V++ L ++ P+ +F+ G
Sbjct: 182 ALAMLAVAIFEPA---LGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT 238
Query: 995 LNRF-----------SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043
+ R S L ++ D L F++ L F + L+ V + L+
Sbjct: 239 VARVRELEQIRNFLTGSALTVVLD-LLFVVVFLAVMFF----YSPTLTGVVIGSLVCYAL 293
Query: 1044 FWFIYSKLQFFYRSTSRELRRL--DSVSRSPIYASF-TETLNGSSTIRAFKSEDYFMAKF 1100
+ LR+ D RS SF E++ G TI+A +E F ++
Sbjct: 294 LSVFVGPI----------LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRW 343
Query: 1101 KEHVVLYQRTSYSELTASLWLSLRLQL---LAAFIISFIATMAVIGSRGNLPATFSTPG- 1156
+ Y S+ ++L L I+ + VIG G L +PG
Sbjct: 344 DRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIG--GAL-----SPGQ 396
Query: 1157 LVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213
LV LA P++ L F +T ++LER+ + ++ P E L+
Sbjct: 397 LVAFNMLAGRVTQPVLRL-AQLWQDFQQT---GIALERLGDILNSPTEP--RSAGLAALP 450
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
+G I F+N+ RY P P L ++N I+ G +GIVG +G+GKS++ L RL
Sbjct: 451 ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ 510
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSV-L 1329
GQ+LVDG+++ LR + VV Q LF S+RDN+ +P + I + L
Sbjct: 511 HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKL 569
Query: 1330 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
H G T V E G + S GQRQ I +ARAL+ + ++L DE T+ +D ++
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
+++ + C+G TVI IAHR+STV D I++L+ G + E G + LL
Sbjct: 630 ALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (467), Expect = 3e-52
Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 8/227 (3%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+NVT Y P P L D++FTI G +V IVG +G+GKS+IL LFR + G IL
Sbjct: 1 IEFENVTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVK 1335
+DG +I + LR VVPQ LF ++ N+ P +++ + + +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEE--VIEAAKAAQIH 117
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+++ G +T V E G+ S G++Q + +ARA+LK+ +L LDE T+ +D T +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
A+ KG T I IAHR+ST++N D+I++L G +VE+G + LL
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 4e-51
Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 7/229 (3%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I F++V RYKP P L +I+ I+ G VGIVGR+G+GKS++ + R G++L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1333
VDG ++ LR + VV Q LF S+RDN+ DP + + + L H
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ E E G +T V E G S GQRQ I +ARAL+ + ++L DE T+ +D ++ +
Sbjct: 121 ISELPE--GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
+ C G TVI IAHR+STV N D I++++ G +VEQG+ LL +
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN 227
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 1e-50
Identities = 155/506 (30%), Positives = 246/506 (48%), Gaps = 63/506 (12%)
Query: 965 RAAVKVHNTLLTKIVNA----PVLFFDQTPGGRILNRFSSDLYMIDD-----------SL 1009
RAAV V L T +++A P+ FD P G++++R ++D +I D S
Sbjct: 91 RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150
Query: 1010 PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVS 1069
I +L+A F L + L + +F +L+V IY Q + R +R
Sbjct: 151 ALIGAMLVAMF--SLDWRMALVAIMIFPAVLVV--MVIY---QRYSTPIVRRVRAY---- 199
Query: 1070 RSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS---LR-- 1124
+ I F E +NG S I+ F+ + A+F E + R+ Y +L L LR
Sbjct: 200 LADINDGFNEVINGMSVIQQFRQQ----ARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255
Query: 1125 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTE--T 1182
L L +A I+ + + G FS G + + + YA +S LG E T
Sbjct: 256 LSLFSALILC--GLLMLFG--------FSASGTIEVGVLYA--FISYLGRLNEPLIELTT 303
Query: 1183 EKEM-----VSLERVLEYMDVPQEELCGYQSLSPDWPFQ-GLIEFQNVTMRYKPSLPAAL 1236
++ M V+ ERV E MD P++ Y + D P Q G I+ NV+ Y+ L
Sbjct: 304 QQSMLQQAVVAGERVFELMDGPRQ---QYGN--DDRPLQSGRIDIDNVSFAYRDDNLV-L 357
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
+IN ++ V +VG TG+GKS++ + L P+ G+I +DG + + LR
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1354
A+V Q P + + N+ + ++W LE + E ++ GL T + E G +
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1414
SVGQ+QL+ LAR L+++ ++L LDE TAN+D+ T +Q A+++ + T++ IAHR+ST
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST 537
Query: 1415 VLNMDEILILDHGHLVEQGNPQTLLQ 1440
++ D IL+L G VEQG Q LL
Sbjct: 538 IVEADTILVLHRGQAVEQGTHQQLLA 563
|
Length = 592 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 184 bits (470), Expect = 5e-49
Identities = 135/489 (27%), Positives = 231/489 (47%), Gaps = 49/489 (10%)
Query: 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVL 1030
L ++ PV FFD+ G +L+R + D + S L ++ A+ +GL +
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 1031 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLD---SVSRSPIYASFTETLNGSSTI 1087
S+ L+++ P + R S+ R + + + S + L G +
Sbjct: 164 SWQLSLILIVIAPI------VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEV 217
Query: 1088 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-RG 1146
F ++ +F + ++ ++AS +QL+A+ ++F+ A S
Sbjct: 218 LIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 1147 NL-PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205
L T + +AL P+ SL N + F ++ M + + + +D+ QE+ G
Sbjct: 278 TLTAGTITVVFSSMIAL--MRPLKSLT-NVNAQF---QRGMAACQTLFAILDLEQEKDEG 331
Query: 1206 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1265
+ + +G IEF+NVT Y AL +INF I G V +VGR+G+GKS+I N
Sbjct: 332 KRVIER---AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANL 388
Query: 1266 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1325
L R I G+IL+DG ++ + + LR + A+V Q+ LF ++ +N I
Sbjct: 389 LTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN-----------I 437
Query: 1326 WSVLEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLK 1370
+ + +E++E GL+T + E+G+ S GQRQ I +ARALL+
Sbjct: 438 AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497
Query: 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+ DEIL+++ G +V
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557
Query: 1431 EQGNPQTLL 1439
E+G LL
Sbjct: 558 ERGTHAELL 566
|
Length = 582 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 5e-47
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 1/195 (0%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG I++ Q WI+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 682 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
GTI++NI+FG +YD Y +KAC L+ DI+ D +GE G+ LSGGQRAR++LA
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILI 230
Query: 802 MDKGQVKWIGSSADL 816
+ +G + G+ ++L
Sbjct: 231 LHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 5e-47
Identities = 123/433 (28%), Positives = 201/433 (46%), Gaps = 51/433 (11%)
Query: 1015 ILLANFVGLLGIAVVL-----SYVQVFFLLLLVPF--WFIYSKLQFFYRSTSRELRRLDS 1067
++LA V L +A V S + + L+P I Q + ++ +
Sbjct: 125 LVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPIFMILIGWAAQ------AAARKQWAA 178
Query: 1068 VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS--YSELTASLWLSLRL 1125
+SR + F + L G T++ F K +R+S Y E T + LR+
Sbjct: 179 LSR--LSGHFLDRLRGLPTLKLFGRA-------KAQAAAIRRSSEEYRERTMRV---LRI 226
Query: 1126 QLLAAFIISFIATMAV------IGSR---GNLPATFSTPGLVGLALSYAAPIVSL-LGNF 1175
L++ ++ AT++V IG R G+L GL L L AP L L
Sbjct: 227 AFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLA---TGLFVLLL---APEFYLPLRQL 280
Query: 1176 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1235
+ + + + E + +D L G ++ +EF V++ Y P A
Sbjct: 281 GAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAY-PGRRPA 337
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L ++FT+ G +V +VG +GAGKS++LN L G I V+G+ + + R +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1351
A VPQ PFLF G++ +N+ D D +I LE+ + E V A+ GL+T + E G
Sbjct: 398 IAWVPQHPFLFAGTIAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGG 456
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
S GQ Q + LARA L+ + +L LDE TA++DA+T + + A+ + +G TV+ + HR
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
Query: 1412 ISTVLNMDEILIL 1424
++ D I++L
Sbjct: 517 LALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 178 bits (455), Expect = 2e-46
Identities = 137/570 (24%), Positives = 235/570 (41%), Gaps = 59/570 (10%)
Query: 290 IGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348
+ A PL +I K L S VLAI L L ++ ++ ++ ++ L +L
Sbjct: 169 LALATPLFSQIVIDKVLPDASRSTL-TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDL 227
Query: 349 SIMTIIYQKCLYVRLAERSEFSDGEIQT-FMSVDTDR---TVNLANSFHDAWSLPFQIGV 404
+ ++ L + L+ + S GEI + ++ R T ++ D L F +
Sbjct: 228 ELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIID---LLFALIF 284
Query: 405 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 464
+ K + LA L + + L+ T K++++ E+ E + I
Sbjct: 285 LAVMFLYSWKLTLIV-LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIE 343
Query: 465 TLKMYGWE-QIFSSW---LMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 520
T+K E + S W L K + K L+ + L + FG
Sbjct: 344 TVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL--ILWFGAIL 401
Query: 521 LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580
++ +L + L ISP+ + A +++ RL L
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL----------- 450
Query: 581 AANSPSYISNGLSNFN--SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638
++P + + + ++ + + ++ V L +SL +P G VA+
Sbjct: 451 --DTPPEQEGDKTLIHLPKLQGEIEFENVS---FRYGPDDPPV-LEDLSLEIPPGEKVAI 504
Query: 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIR 685
+G GSGKS+LL +LG G I G + YV Q P++ SG+IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 686 DNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
+NI G +P+ + E ++A L I + G +GE G NLSGGQR RLALA
Sbjct: 565 ENIALG---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RA+ I +LD+ SA+D + IL N + + +T I+ H + I +AD ++V
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQN--LLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 802 MDKGQVKWIGSSADLAVS--LYSGFWSTNE 829
+D+G++ GS +L LY+ + E
Sbjct: 680 LDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 1e-45
Identities = 89/244 (36%), Positives = 135/244 (55%), Gaps = 5/244 (2%)
Query: 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+G +EF +V+ Y S + D++F + G V IVG TGAGKS+++N L R+
Sbjct: 331 VKGAVEFDDVSFSYDNSRQG-VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1331
G+IL+DG +I LR AVV Q LF S+ DN+ P +++++ + +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
H E + G +T V E G S G+RQ + +ARALLK +L LDE T+ +D +T +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
++ A+ KG T IAHR+STV N D IL+ D+G +VE G+ L+ F++ +R
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA-RGGRFAALLR 568
Query: 1452 ASTM 1455
A M
Sbjct: 569 AQGM 572
|
Length = 588 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-45
Identities = 83/223 (37%), Positives = 117/223 (52%), Gaps = 9/223 (4%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV+ Y AL +++ TI G +V I+GR G+GKS++L L L G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1333
+L+DG +I DLR VPQ LF G+LRDN+ P DD +I E
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1334 VKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V + V GL+ + E G S GQRQ + LARALL +L LDE T+ +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
L+ + T+I I HR S +L++ D I+++D G +V G
Sbjct: 179 LKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 4e-44
Identities = 140/540 (25%), Positives = 236/540 (43%), Gaps = 85/540 (15%)
Query: 946 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1005
+ LT ++ + ++ AV + L I+ PV FF Q G I +R
Sbjct: 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQ------ 258
Query: 1006 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK--------------L 1051
LN +A F+ L V + F LL+ +Y L
Sbjct: 259 -------LNDQVAEFLSGQLATTALDAVMLVFYALLM---LLYDPVLTLIGIAFAAINVL 308
Query: 1052 QFFYRSTSREL--RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109
S R RRL + + + L T++A E F +++ YQ
Sbjct: 309 ALQLVSRRRVDANRRLQQDAGKLTGVAIS-GLQSIETLKASGLESDFFSRWAG----YQA 363
Query: 1110 TSYSELTASLWLSLRLQLLAAF--IISFIATMAVIG------SRGNLPATFSTPGLV--- 1158
L A L + Q+L +++ + + ++ G L + LV
Sbjct: 364 KL---LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQL----TIGMLVAFQ 416
Query: 1159 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEELCGYQSLS-PDWPFQ 1216
L S+ P+ +L+G F + E E ++ L+ VL +D EE + S P
Sbjct: 417 SLMSSFLEPVNNLVG-FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1274
G +E +N+T Y P P + + + T++ G +V +VG +G+GKS+I +L + G
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA----KL--VAGLY 529
Query: 1275 ----GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWS 1327
G+IL DG+ P L A+V Q FLFEG++RDNL DP + D
Sbjct: 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDA----D 584
Query: 1328 VLEKCH---VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
++ C + + + + G + + E G + S GQRQ + +ARAL+++ +L LDE T+
Sbjct: 585 LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
+D +T I+ + + +G T I +AHR+ST+ + DEI++L+ G +V++G + L
Sbjct: 645 ALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG 702
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 5e-44
Identities = 77/260 (29%), Positives = 137/260 (52%), Gaps = 13/260 (5%)
Query: 1188 SLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1247
SL LE ++ G + L+ + P IE +++ + P +NFT+ G
Sbjct: 323 SLVTFLETPLAHPQQ--GEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1307
++ +VG +GAGK+S+LNAL P G + ++G+ + R + V Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1308 GSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1362
G+LRDN+ +P +D+ ++ LE V E + + GL+T + + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP-DASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1422
LARALL+ ++L LDE TA++DA + ++ A+++ + T + + H++ + D+I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1423 ILDHGHLVEQGNPQTLLQDE 1442
++ G +V+QG+ L Q
Sbjct: 555 VMQDGQIVQQGDYAELSQAG 574
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 7e-44
Identities = 124/451 (27%), Positives = 218/451 (48%), Gaps = 35/451 (7%)
Query: 1003 YMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF--LLLLVPFWFIYSKLQFFYRSTSR 1060
+++ + LP ++ I L +L + ++L + F I S R
Sbjct: 58 WILFNILPTLVEISLV--AVILWRVYGWWFALTTLVTVILYLLFTVIVS--------DWR 107
Query: 1061 -ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1119
+ RRL + + S A ++L T++ F +E+Y ++ + Y++ + + L
Sbjct: 108 TDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167
Query: 1120 WLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
L+ + + + + TM+ +G G L T G + + + L S
Sbjct: 168 VLNFGQTAIFSTGLRVMMTMSALGVEEGQL-----TVGDLVNVNALLFQLSIPLNFLGFS 222
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD----WPF-QGLIEFQNVTMRYKPSLP 1233
+ E + + +E++ + +DV E S +PD WP G + F NV+ Y P P
Sbjct: 223 YREIRQALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
L+ I+FTI G V IVG +GAGKS+IL LFR + G I +DG +I + + LR
Sbjct: 278 I-LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 1294 GRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEA--VGLETFVKE 1349
+VPQ LF ++ N+ + D ++ + E + + +++ G +T V E
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1409
G+ S G++Q + +AR +LK+ +L LDE T+ +D T +Q A+ G T + IA
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIA 455
Query: 1410 HRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
HR+ST+++ DEI++LD+G +VE+G + LL
Sbjct: 456 HRLSTIIDADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 2e-42
Identities = 138/517 (26%), Positives = 242/517 (46%), Gaps = 50/517 (9%)
Query: 946 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1005
+ L+ ++ F R ++ + + + + P+ FF G I++RF+ +I
Sbjct: 207 IIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSII 266
Query: 1006 DDSLPFILNILL-ANFVGLLGIAVVLSYVQVFFLLLL-VPFWFIYSKLQFFYRSTSRELR 1063
D IL++ L + ++G+ +V + +F L LL +P +Y+ + ++ T +L
Sbjct: 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP---VYAVIIILFKRTFNKLN 323
Query: 1064 RLDSVSRSPIYASFTETLNGSSTIRAFKSE-------DYFMAKFKEHVVLYQRTSYSELT 1116
+ + + +S E LNG TI++ SE D + YQ+ +
Sbjct: 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1176
+ +L+ +I + V+ RG L +G +++ A LL FL
Sbjct: 384 ----IKAVTKLILNVVILWTGAYLVM--RGKLT--------LGQLITFNA----LLSYFL 425
Query: 1177 SSF-------TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYK 1229
+ + + V+ R+ E V E + + + G I +V+ Y
Sbjct: 426 TPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNL-NGDIVINDVSYSYG 484
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289
L DI+ TI+ ++ IVG +G+GKS++ L G+IL++G ++ +
Sbjct: 485 YGSNI-LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1290 RDLRGRFAVVPQSPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVE--AVGL 1343
LR +PQ P++F GS+ +NL D+ IW+ E +K+++E +G
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE--IWAACEIAEIKDDIENMPLGY 601
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKG 1402
+T + E G S S GQ+Q I LARALL SKVL LDE T+N+D T I+ N ++ + K
Sbjct: 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK- 660
Query: 1403 MTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439
T+I +AHR+S D+I++LDHG ++EQG+ LL
Sbjct: 661 -TIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 5e-42
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 22/203 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--------------- 667
L+ +++ +P G L ++G+VG GKSSLL +ILGEM G +H S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 668 --GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
S+AY Q PW+L+ T+ +NI FG ++ Q Y AC+L DI L+ GD IGE
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ---KT 782
+G+NLSGGQR R+ +ARA+Y ++I LDD SA+D ++ ++ I+ LQ +T
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL--KFLQDDKRT 194
Query: 783 RILCTHNVQAISAADMVVVMDKG 805
+L TH +Q + AD ++ M G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (390), Expect = 1e-41
Identities = 80/232 (34%), Positives = 133/232 (57%), Gaps = 4/232 (1%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD 59
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
I +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1337 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T +++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVF 1446
+ TVI HRI +L L+++ + + + Q LL +E S F
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHF 230
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 161 bits (411), Expect = 2e-41
Identities = 133/494 (26%), Positives = 213/494 (43%), Gaps = 89/494 (18%)
Query: 992 GRILNRFSSDLYMID--DSLPF-ILNILLANFVGLLGIAVVLSYVQV-------FFLLLL 1041
G +LNR +D +D D L +++ L+A V +L + + LS+ + LLLL
Sbjct: 117 GDLLNRLVAD---VDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLL 173
Query: 1042 VPFWFIYSKLQFFYR---STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMA 1098
+ L FYR ++L L + R TE L G + + F +ED +
Sbjct: 174 ---LLLLPLL--FYRLGKKPGQDLTHLRAQYRV----QLTEWLQGQAELTLFGAEDRYRQ 224
Query: 1099 KFK--EHVVLYQRTSYSELTASLWLSLRLQLLA-AFIISFIATMAVIGSRGNLP------ 1149
+ + E L + + LT LS L +LA + + +A G GN
Sbjct: 225 QLEQTEQQWLAAQRRQANLTG---LSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIA 281
Query: 1150 -------ATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202
A F V A + LG ++S R+ E + Q+
Sbjct: 282 LFVFAALAAFEALMPVAGAFQH-------LGQVIAS----------ARRINEITE--QKP 322
Query: 1203 LCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI 1262
+ + S Q + NV+ Y L ++ I+ G +V ++GRTG GKS++
Sbjct: 323 EVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTL 382
Query: 1263 LNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHM 1319
L L R G+IL++G I + LR +VV Q LF +LRDNL P
Sbjct: 383 LQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP--N 440
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVK----------ESGISFSVGQRQLICLARALL 1369
D + VL++ VGLE ++ E G S G+++ + +ARALL
Sbjct: 441 ASDEALIEVLQQ---------VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALL 491
Query: 1370 KSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428
+ +L LDE T +DA+T IL+ ++ + TV+ I HR++ + D I ++D+G
Sbjct: 492 HDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQ 550
Query: 1429 LVEQGNPQTLLQDE 1442
++EQG Q LL +
Sbjct: 551 IIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-40
Identities = 66/243 (27%), Positives = 121/243 (49%), Gaps = 10/243 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N+T +Y A L ++F +E G G++G GAGK+++L L L G+I
Sbjct: 4 VIEVRNLTKKYGGDKTA-LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK-IWSVLEKCHVK 1335
LV G +++ P +R R VPQ P L+ ++R+NL+ F L + + ++
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFAR---LYGLSKEEAEERIE 118
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E +E GLE + + S G +Q + +A ALL ++L LDE T+ +D ++ +
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1396 ISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452
+ K G+T++ H + + D ++IL+ G ++ +G P+ L + +
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEP 238
Query: 1453 STM 1455
+
Sbjct: 239 ERL 241
|
Length = 293 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 1e-38
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
Query: 1208 SLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1265
SL+PD +G+++FQNVT Y P+ P L D++FT+ G +VG +G+GKS+++
Sbjct: 2 SLAPD-HLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVAL 59
Query: 1266 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DL 1323
L GGQ+L+DG I + L + ++V Q P LF SL+DN+ + +
Sbjct: 60 LENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI-AYGLQSCSFE 118
Query: 1324 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
+ +K H + A G +T V E G S GQ+Q + +ARAL+++ +VL LDE T
Sbjct: 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 1382 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1429
+ +DA++ +Q A+ + TV+ IAHR+STV D+IL+LD G +
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 4e-38
Identities = 145/528 (27%), Positives = 232/528 (43%), Gaps = 69/528 (13%)
Query: 951 LTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1010
L ++R + SL+AAV + LL PV FF Q G + +R + I L
Sbjct: 198 LAVLRLETRMDASLQAAV--WDRLL----RLPVSFFRQYSTGDLASRAMG-ISQIRRILS 250
Query: 1011 -FILNILLANFVGLLGIAVVLSY------VQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1063
L LL+ LL + ++ Y V V L+ + + LQ R L
Sbjct: 251 GSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK---ERRLL 307
Query: 1064 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123
L I + +NG S +R +E+ A++ + + L L
Sbjct: 308 ELSG----KISGLTVQLINGISKLRVAGAENRAFARWAK-----------LFSRQRKLEL 352
Query: 1124 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPI--VSLLGNFLSS--- 1178
Q + + F A + V+ S L A + L G LS + + + G+F +
Sbjct: 353 SAQRIENLLTVFNAVLPVLTS-AALFA-AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQ 410
Query: 1179 FTETEKEMVSL----ERVLEYMDVPQEELCGYQSLSPD-WPFQGLIEFQNVTMRYKPSLP 1233
+ T ++++ ER ++ E D G IE VT RY+P P
Sbjct: 411 LSNTLISILAVIPLWERAKPILEALPE----VDEAKTDPGKLSGAIEVDRVTFRYRPDGP 466
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTP 1288
L D++ IE G V IVG +G+GKS+ L RL TP G + DG ++
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKST----LLRLLLGFETPE-SGSVFYDGQDLAGLD 521
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEA--VGL 1343
V+ +R + VV Q+ L GS+ +N+ P +++ W + E++ A +G+
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE---AWEAARMAGLAEDIRAMPMGM 578
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
T + E G + S GQRQ + +ARAL++ ++L DE T+ +D +T +I+ S E +
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE--SLERLKV 636
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
T I IAHR+ST+ N D I +LD G +V+QG L+ E +F+ R
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMARE-GLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-38
Identities = 107/454 (23%), Positives = 194/454 (42%), Gaps = 66/454 (14%)
Query: 991 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL------------ 1038
G +L R +D +D + +++ V L+ A ++ + V +
Sbjct: 109 RGDLLGRLGAD---VDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLL 165
Query: 1039 -LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1097
+ P + + R+ + L RL R + A T+ L+G++ + A + +
Sbjct: 166 AGFVAPLVSLRAA-----RAAEQALARL----RGELAAQLTDALDGAAELVASGALPAAL 216
Query: 1098 AKFKEHVVLYQRTSYSELTA-----SLWLSLR--LQLLAAFIISFIATMAVIGSRGNL-- 1148
A+ + ELT + +L L LLAA + + G
Sbjct: 217 AQ-------VEEAD-RELTRAERRAAAATALGAALTLLAAGLA--VLGALWAGGPAVADG 266
Query: 1149 ---PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205
P T + L+ LA A + L T + ER++E +D G
Sbjct: 267 RLAPVTLAVLVLLPLAAFEA---FAALPAAAQQLTRVRA---AAERIVEVLDAAGPVAEG 320
Query: 1206 YQSLSPDWPFQGL-IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1264
+ +E ++++ Y + P L ++ + G +V I+G +G+GKS++L
Sbjct: 321 SAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLA 379
Query: 1265 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-----DPFHM 1319
L L G++ +DG+ + + ++R R +V Q LF+ ++R+NL D
Sbjct: 380 TLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA--- 436
Query: 1320 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
D ++W+ LE+ + + + A+ GL+T + E G S G+RQ + LARALL + +L L
Sbjct: 437 -TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
DE T ++DA+TA L + + G TV+ I H
Sbjct: 496 DEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 7e-38
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 1219 IEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
I ++ + + L DIN + G V IVG G+GKSS+L+AL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1332
+ V G A V Q P++ G++R+N+ PF D+ + V++ C
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPF---DEERYEKVIKAC 104
Query: 1333 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
++ ++E + G T + E GI+ S GQ+Q I LARA+ + + LD+ + VDA
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1391 -ILQNAISSECKGM-TVITIAHRISTVLNMDEILILDHG 1427
I +N I T I + H++ + + D+I++LD+G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-36
Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 13/316 (4%)
Query: 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALG 322
SL+R + A Y K+++D P+LL +KFL + G L + L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 323 LTSILKSFFDTQYSFHLS-KLKLKLRSSIMTIIYQKCLYV--RLAERSEFSDGEIQTFMS 379
LT +++S ++ +++S + L+ RS++ +I++KC + + + + + G I MS
Sbjct: 293 LTQLIQSVCLHRF-YYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMS 351
Query: 380 VDTDRTVNLANSFHD----AWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 435
D +R NSF WS P + +++ LL V + + +A+ ++ +P+N I
Sbjct: 352 TDVER----INSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407
Query: 436 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKY 495
A K+ K D R++ T E + IR K WE F + + R+ E+++L +
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 496 LDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGL 555
F TPTL F ++ L+GH+L +VF +AL L P PWV +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 556 IDAFISIRRLTRFLGC 571
+ +SI+R++ FL C
Sbjct: 528 LQFLVSIKRISTFLEC 543
|
Length = 1560 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 2e-36
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 56/204 (27%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
VL VSL + G VA++G GSGKS+LL +L T G I G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+IAYVPQ P++ SGTIR+NI
Sbjct: 71 LESLRKNIAYVPQDPFLFSGTIRENI---------------------------------- 96
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
LSGGQR R+A+ARA+ I +LD+ SA+D + IL + KT
Sbjct: 97 -------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA--LRALAKGKT 147
Query: 783 RILCTHNVQAISAADMVVVMDKGQ 806
I+ H + I AD ++V+D G+
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-35
Identities = 75/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%)
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
Y + AL ++NFT++ G +GI G TG+GKS++L+ + R + G I + +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-- 1341
+ R R AVV Q+PFLF ++ +N+ + +I V V +++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSEC 1400
G +T V E G+ S GQ+Q I +ARALL ++++L LD+ + VD +T IL N +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWG 498
Query: 1401 KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
+G TVI AHR+S + EIL++ HGH+ ++GN L Q
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 3e-35
Identities = 85/240 (35%), Positives = 135/240 (56%), Gaps = 5/240 (2%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G +EF+++T + + + D++F + G V IVG TGAGK++++N L R+ GQ
Sbjct: 333 GAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVK 1335
IL+DG++I LR A V Q LF S+R+N+ D +++ +
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ + G +T V E G S G+RQ + +ARA+LK++ +L LDE T+ +D +T + ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453
NAI + K T IAHR+STV N D +L LD G L+E+G+ Q L+Q + F +R S
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLLRRS 570
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-35
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 40/210 (19%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NV+ RY + P L +++F+IE G + I+G +G+GKS++ + L G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG +I +L +PQ LF GS+ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
S GQRQ + LARAL + ++L LDE +++D + L AI++
Sbjct: 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1399 -ECKGMTVITIAHRISTVLNMDEILILDHG 1427
+ G T I IAHR T+ + D IL+L+ G
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 73/239 (30%), Positives = 117/239 (48%), Gaps = 31/239 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPIC-- 1273
IE +++ + Y AL DI+ I G ++G +G GKS++L L RL P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1274 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G++L+DG +I ++ V +LR R +V Q P F GS+ DN+ L++ + K
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAY-----GLRLHGIKLK 113
Query: 1332 CHVKEEVEA----VGLETFVKE--SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ E VE L VK+ + S GQ+Q +CLARAL +VL LDE T+ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1386 AQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTL 1438
+ + ++ I+ K T++ + H R++ D L +G LVE G + +
Sbjct: 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 8e-34
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 31/243 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ L+ ++L + G L A++G G+GKS+LLN +LG + T G I +G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGD 719
I++V Q P++ +GTIR+NIL + P + E + A + V G D
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLAR---PDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
IGE G LSGGQ RLALARA+ + + +LD+ + +DA+ + IL +
Sbjct: 448 TV-IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA--LQELAK 504
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ 839
QKT ++ TH ++ + AD +VV+D G++ G+ +L +L Q++
Sbjct: 505 QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL--------SEKQGLYANLLKQQE 556
Query: 840 EMR 842
R
Sbjct: 557 GRR 559
|
Length = 559 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 9e-34
Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 37/215 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ NV+ Y L +++ ++ G ++ ++GR+G+GKS++L L G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG+ + + + L +V+ Q P+LF+ +LR+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
G FS G+RQ + LAR LL+ + ++ LDE T +D T L + I
Sbjct: 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 1399 ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1433
K T+I I H ++ + +MD+IL L++G ++ QG
Sbjct: 144 VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E +N++ Y L D++F+I G GI+G G+GKS++L L L G++
Sbjct: 2 MLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRD--------NLDPFHMNDDLKIWSV 1328
L+DG +I + ++L + A VPQSP G ++ + +L F S
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF------GRPSK 113
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
++ V+E +E +GLE S G+RQ + +ARAL + + +L LDE T+++D
Sbjct: 114 EDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1389 ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
+ + + G+TV+ + H ++ D +++L G +V QG P+ +L +E
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEE 230
|
Length = 258 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 9e-33
Identities = 112/514 (21%), Positives = 200/514 (38%), Gaps = 80/514 (15%)
Query: 339 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 398
LS L+++L ++K + A + G++ + D D L N +
Sbjct: 90 LSALRVRL--------FEKLEPLSPALLLRYRSGDLLNRLVADVD---ALDNLYLRV-IA 137
Query: 399 PFQIGVALYLLYTQVKFAFVSGLAITI--------LLIPVNKWIANLIANATEKMMKQKD 450
P + + L + T F LA+ + L+IP + + Q
Sbjct: 138 PAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIP---TLFYRAGRKFGAHLAQGR 194
Query: 451 ERIR-RTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 509
+R + + + L ++G E + + L T +S +K +
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL----L 250
Query: 510 LFSLFT-FGLFALMGHQLD---------AAMVFTCLALFNSLISPLNSFPWVINGLIDAF 559
L + GL M Q+ A + A + + +I
Sbjct: 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA-- 308
Query: 560 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 619
S RRL L + E + A+ +++ + ++ +Q
Sbjct: 309 -SARRLNDIL-----DQKPEVTFPDE--------QTATTGQALELRNVSFTY----PGQQ 350
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L +L L +G VA++G GSGKS+LL + G GSI +G
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 669 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGDMAY 722
+I+ + Q + SGT+RDN+ P + E L A V + ++ G +
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQVGLEKLLESAPDGLNTW 467
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+GE G LSGG+R RLALARA+ H + +++LD+ +D R +L A++ H KT
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL--ALLFEHAEGKT 525
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
++ TH ++ + D ++V+D G++ G+ A+L
Sbjct: 526 LLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559
|
Length = 573 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 10/215 (4%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +N++ Y AL DI+ TI+ G V IVG G+GKS++L L L G++LV
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVK 1335
DG ++ +++LR + +V Q+P F ++ + + ++ + + E+ V+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE--IEER--VE 116
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E +E VGLE S + S GQ+Q + +A L +L LDE TA +D L
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 1396 ISS-ECKGMTVITIAHRISTVLN-MDEILILDHGH 1428
+ + +G T+I + H + +L D +++L+ G
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-32
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 56/211 (26%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +N++ RY AL +++ T++ G V +VG G+GKS++L A+ L G+IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
DG +I P+ +LR R VPQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ-------------------------------------- 80
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
S GQRQ + LARALL + +L LDE T+ +D + L +
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 1400 C-KGMTVITIAHRISTVLN-MDEILILDHGH 1428
+G TVI + H D +++L G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 1e-31
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 15/234 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N++ RY AAL D++ IE G +V ++G G+GKS++L L L G++
Sbjct: 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1278 LVDGLNI-INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD---PFHMNDDLKIWSVLEK 1331
LVDGL+ + +LR + +V Q+P LF ++ D + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER--- 118
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E +E VGLE + + S GQ+Q + +A L ++L LDE TA +D +
Sbjct: 119 --VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 1392 LQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442
L + E G T+I + H + VL D +++LD G ++ G+P + D
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ VL +SL +P G VA++G GSGKS+L+N I + G I G
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT 70
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMA 721
I V Q ++ + T+ +NI +G+ + E +A I + G
Sbjct: 71 LASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ- 780
IGE+GV LSGGQR R+A+ARA+ I +LD+ SA+D + R + A+ +++
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV-QAAL--ERLMKN 187
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T + H + I AD +VV++ G++ G+ +L
Sbjct: 188 RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-31
Identities = 47/275 (17%), Positives = 103/275 (37%), Gaps = 12/275 (4%)
Query: 894 WFITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFYL-VVLCIFCMFNSFL 951
+ L++ + L+ L L ++D + + S+ L ++L + L
Sbjct: 4 AILLLILAGATALVFP------LLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLL 57
Query: 952 TLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPF 1011
+ R ++ LL +I+ P+ FFD G + +R ++D+ I D L
Sbjct: 58 LQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGD 117
Query: 1012 ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRS 1071
L + + ++G +V+ Y L+L+ + L R+L R + + +
Sbjct: 118 KLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYA 177
Query: 1072 PIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1131
+ E+L+G T++AF E+Y + ++ + + ++ + + QL++
Sbjct: 178 KAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 1132 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1166
+ + G V LS
Sbjct: 238 SYALALWFGAYLVISG----GLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+E+ VL ++ + G VA++G G+GK++L+N ++ G I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAY 722
I V Q ++ SGTI +NI G+ E K I + G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+GE G NLS G+R LA+ARA+ I +LD+ S +D + + I + M +T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI--QEALEKLMKGRT 190
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGS 812
I+ H + I AD ++V+D G++ G+
Sbjct: 191 SIIIAHRLSTIKNADKILVLDDGKIIEEGT 220
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSI------HASG 668
+L +SL +P G VA++G G GKS++++ + GE++L I
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYIG 724
I V Q P + GTI +NI +GK E +A D +SL G D +G
Sbjct: 78 QIGLVSQEPVLFDGTIAENIRYGKPDATDE--EVEEAAKKANIHDFIMSLPDGYD-TLVG 134
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQK 781
E+G LSGGQ+ R+A+ARA+ I +LD+ SA+DA+ + + L A+ G +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG-----R 189
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
T I+ H + I AD++ V+ GQV G+ +L
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L VS +P G VA++G G+GKS+LLN +LG + T GSI +G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 669 --SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
IA+VPQ P++ +GTI +NI + E L+ LD ++ + G IGE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
G LSGGQ RLALARA + + +LD+ + +DA+ +L + +T +L
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL--EALRALAQGRTVLL 512
Query: 786 CTHNVQAISAADMVVVM 802
TH + + AD +VV+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-30
Identities = 66/254 (25%), Positives = 118/254 (46%), Gaps = 43/254 (16%)
Query: 1218 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1271
L+E +N+T+ + A+ D++F +E G +GIVG +G+GKS++ AL L P
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1272 ICGGQILVDGLNIIN---TPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327
I G++++DG +++ +R LRG R A++ Q P SL N + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM---TSL---------NPVMTIGD 112
Query: 1328 VLEKCH------VKEEVEAVGLETFVKESGIS-----------FSVGQRQLICLARALLK 1370
+ + + E +E ++ G+ S G RQ + +A AL
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELL-EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHG 1427
K+L DE T +D T + + + + + GM V+ I H + V + D ++++ G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 1428 HLVEQGNPQTLLQD 1441
+VE G + +L +
Sbjct: 232 EIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 6e-30
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ RY AL DI+ T+E G G++G GAGK++++ + L G+I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
V G +I P +++ R +P+ P L+E ++R+NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
S G +Q + LA+ALL ++L LDE T+ +D ++ +
Sbjct: 96 ----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 1398 SECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1429
K G T++ +H + + D + IL++G +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 1e-29
Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L+E +N+++ + AL D++F+I+ G +G+VG +G+GKS++ A+ L G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1276 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWS 1327
I+ DG +++ + R +V Q P +L+P + + L+I
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPRMTIGEQIAEPLRIHG 113
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGIS------FSVGQRQLICLARALLKSSKVLCLDECT 1381
L K ++E + L + S GQRQ + +ARAL + K+L DE T
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 1382 ANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ +D AQ +L+ + E G+T++ I H + V + D + ++ G +VE+G
Sbjct: 174 SALDVSVQAQILDLLKK-LQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 26/227 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + ++ Y AL D++ T+E G + ++G +G GK+++L + L G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLEKC 1332
+DG ++ P R +V Q LF P H+ ++ LK+ V +
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF---------P-HLTVAENIAFGLKLRGVPKAE 106
Query: 1333 H---VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
V+E +E VGLE + S GQ+Q + LARAL + +L LDE + +DA+
Sbjct: 107 IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 1390 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
L+ + + G+T I + H L + D I +++ G +V+ G
Sbjct: 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 71/225 (31%), Positives = 105/225 (46%), Gaps = 23/225 (10%)
Query: 1220 EFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
E +++T+ Y P L D++F ++ G + IVG GAGKS++L A+ L G I
Sbjct: 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQS---PFLFEGSLRD----NLDPFHMNDDLKIWSVLE 1330
V G P+ R R VPQ F S+RD L H + S +
Sbjct: 57 RVFGK-----PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKG-LFRRLSKAD 109
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
K V E +E VGL S GQ+Q + LARAL++ +L LDE A VD +T
Sbjct: 110 KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169
Query: 1391 ILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433
+ + +GMT++ + H + VL D +L+L+ +V G
Sbjct: 170 DIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-29
Identities = 65/233 (27%), Positives = 109/233 (46%), Gaps = 15/233 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N+T+ Y L DI+ ++E G ++G GAGKS++L A+ L G+I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSP---FLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1331
+ G + R R R VPQ F +++D + + + +K
Sbjct: 62 KIFGKPV---RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-FRRLNKKDK 117
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E +E VG+E S GQ+Q + LARAL ++ +L LDE VD
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177
Query: 1392 LQNAISSE-CKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1442
+ + + +G TV+ + H + V+ D ++ L + HL+ G P+ +L +E
Sbjct: 178 IYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTEE 229
|
Length = 254 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
VL +S + G V ++G GSGKSSLL ++ + L+ GSI G
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL 73
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 717
I+ +PQ P + SGTIR N+ DP YS+ L+ L + + G
Sbjct: 74 HDLRSRISIIPQDPVLFSGTIRSNL------DPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
G + E G NLS GQR L LARA+ S I +LD+ ++VD + ++ I
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIRE-A 185
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812
T + H + I +D ++V+DKG+V S
Sbjct: 186 FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 55/205 (26%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 669
+ VL VS + G +A+IG GSGKS+L ILG + T G + G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 670 -------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+ Y+PQ + SG+I +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
SGGQR RL LARA+Y I +LD+ S +D + R + AI T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGAT 148
Query: 783 RILCTHNVQAISAADMVVVMDKGQV 807
RI+ H + +++AD ++V++ G+V
Sbjct: 149 RIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-28
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ L +S L G +A+IG GSGKS+L I+G T GS+ G
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 669 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 721
I Y+PQ + GT+ +NI FG+N DP+ E K + ++ + L G D
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYD-T 446
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 779
IG G LSGGQR R+ALARA+Y + +LD+ S +D + A L+NAI
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA---LANAIKALKAR 503
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811
T ++ TH + D ++V+ G++ G
Sbjct: 504 GITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-28
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ L+ VSL + G VA+IG VGSGKS+LL + G T GS+ G
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP 73
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY- 722
+I YVPQ + GT+RDNI G L+A L +
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLD 131
Query: 723 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN--AIMGPHM 778
IGE+G LSGGQR +ALARA+ + I +LD+ SA+D + ++G
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189
Query: 779 LQKTRILCTHNVQAISAADMVVVMDKGQV 807
KT I+ TH + D ++VMD G++
Sbjct: 190 --KTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 42/215 (19%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NV+ RY L+D++ IE G V ++G +G+GKS++L + L G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1279 VDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+DG L + + LR R +V Q LF H+ +VLE
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALF----------PHL-------TVLENI---- 97
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
A+GL SG GQ+Q + LARAL VL LDE T+ +D T ++ +
Sbjct: 98 ---ALGL------SG-----GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 1397 SSECK--GMTVITIAHRISTVLNM-DEILILDHGH 1428
S G+TV+ + H + + D +++L G
Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 110 bits (279), Expect = 9e-28
Identities = 60/218 (27%), Positives = 100/218 (45%), Gaps = 42/218 (19%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +N+++ Y L D++ +IE G VGI+G GAGKS++L L L G+IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
DG ++ + ++L + A VPQ+ +E
Sbjct: 59 DGKDLASLSPKELARKIAYVPQA-----------------------------------LE 83
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISS 1398
+GL S G+RQ + LARAL + +L LDE T+++D A +L+ +
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRR 142
Query: 1399 ECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ G TV+ + H ++ D +++L G +V QG
Sbjct: 143 LARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-27
Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 29/242 (11%)
Query: 1218 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+IE +NV+ + AL D++ I G GI+G +GAGKS++L + L
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 1275 GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1329
G + VDG ++ +R LR + ++ Q L ++ +N+ P L++ V
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP------LELAGVP 114
Query: 1330 -EKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ V E +E VGL S GQ+Q + +ARAL + K+L DE T+ +D
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1387 QTA-SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NP 1435
+T SIL+ I+ E G+T++ I H + V + D + +LD G LVE+G NP
Sbjct: 175 ETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233
Query: 1436 QT 1437
+
Sbjct: 234 KH 235
|
Length = 339 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 62/242 (25%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +N+ Y S L ++ T+ G V ++GR GAGK+++L + L P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1279 VDGLNIINTPVRDL--RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
DG +I P + G VP+ +F ++ +NL L + K
Sbjct: 59 FDGRDITGLPPHERARAG-IGYVPEGRRIFPELTVEENL--------LLGAYARRRAKRK 109
Query: 1336 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA-- 1382
+E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 110 ARLERV-YELFPRLKERRKQLAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 1383 --NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+ + ++ + E G+T++ + L + D +L+ G +V +G LL
Sbjct: 164 APKIVEEIFEAIR-ELRDE--GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
Query: 1440 QD 1441
D
Sbjct: 221 AD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-26
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ L+ VSL + G VA+IG +GSGKS+LL +LG T GS+ G
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 719
+I YVPQ P + GT+RDNI G Y E L+A L + G D
Sbjct: 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
M IGE+G +LSGGQR +ALARA+ I +LD+ SA+D + L
Sbjct: 593 MQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK-------DRL 644
Query: 780 Q-----KTRILCTHNVQAISAADMVVVMDKGQV 807
+ KT +L TH + D ++VMD G++
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ VL +SL + G VA++G G GKS+LL + G I +G
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM--- 720
+I+ V Q + S T+RDN+L P + E L V + ++ D
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAA---PNASDEALIEVLQQVGLEKLLEDDKGLN 466
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
A++GE G LSGG++ RL +ARA+ H + + +LD+ +DA+ R IL ++ H
Sbjct: 467 AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL--ELLAEHAQN 524
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
KT ++ TH + + D + VMD GQ+ G+ +L
Sbjct: 525 KTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560
|
Length = 574 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ +L +S L G + +IG GSGKS+L ++G T GS+ G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 669 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 721
I Y+PQ + GTI +NI FG+ DP+ E + + ++ + L G D
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYD-T 464
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 779
IGE G LSGGQR R+ALARA+Y + +LD+ S +D++ A L+ AI+
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA---LAAAILAAKAR 521
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 815
T ++ H A+++ D ++V+ G++ G +
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 24/231 (10%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L+ +N+++ Y AL++++ IE G +GIVG +G+GKS++ L L G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1276 QILVDGLNIIN-TPVRDLRGRFAVVPQSPFL-------FEGSLRDNLDPFHMND-DLKIW 1326
IL+DG + + +V Q P+ L + L P ++ +I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+L++ + L+ E S GQRQ I +ARAL+ K+L LDE T+ +D
Sbjct: 123 ELLDQVGLPPSF----LDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1387 QT-ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
A IL N + K G+T + I+H ++ V +M D I ++D+G +VE G
Sbjct: 175 SVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIG 224
|
Length = 252 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 1219 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
+E +NV+ Y A AL DI+ ++E G V +VG +G GKS++L + L G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDN--LDPFHMNDDLKIWSVLE-KC 1332
+LVDG PV V Q L ++ DN L +L+ E +
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-----ELQGVPKAEARE 110
Query: 1333 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+E +E VGL F SG G RQ + LARAL VL LDE + +DA
Sbjct: 111 RAEELLELVGLSGFENAYPHQLSG-----GMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1388 TASILQN---AISSECKGMTVITIAHRISTVLNM-DEILIL 1424
T LQ I E G TV+ + H I + + D +++L
Sbjct: 166 TREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-26
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
QG + + +T L I+F ++ G +GI+G +G+GKS++ L + P G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1276 QILVDGLNIINTPVRDLRGRFA-VVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCH 1333
+ +DG ++ L GR +PQ LF+G++ +N+ F D K+
Sbjct: 392 SVRLDGADLRQWDREQL-GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E + + G +T + E G + S GQRQ I LARAL ++ LDE +N+D++ +
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1392 LQNAI-SSECKGMTVITIAHRISTVLNMDEILILDHGHL 1429
L AI +++ +G TV+ IAHR S + ++D+IL+L G +
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-25
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 48/331 (14%)
Query: 516 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN---GLIDAFISIRRLTR-FLGC 571
G + +M +L + T AL + ++PL + +IN L A ++ RL +L
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLEN---IINLQPKLQAARVANNRLNEVYLVD 455
Query: 572 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW-YCNNEEEQNVVLNQVSLCL 630
SE+ ++ ++ + ++N + + D + S+ Y +N +L+ +SL +
Sbjct: 456 SEFINKKKR-----TELNNLNGDIV-------INDVSYSYGYGSN------ILSDISLTI 497
Query: 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVP 677
S ++G GSGKS+L ++G G I +G I Y+PQ P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQ 734
+I SG+I +N+L G + S E AC + DI M G + E+G ++SGGQ
Sbjct: 558 YIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
+ R+ALARA+ S + +LD+ S +D + I++N + ++ KT I H +
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL---NLQDKTIIFVAHRLSVAK 673
Query: 795 AADMVVVMDKGQVKWIGSSADLAVSLYSGFW 825
+D ++V+D G++ GS +L +GF+
Sbjct: 674 QSDKIIVLDHGKIIEQGSHDELL--DRNGFY 702
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-25
Identities = 70/247 (28%), Positives = 119/247 (48%), Gaps = 31/247 (12%)
Query: 1218 LIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268
L+ +N++ RY A+ D++F + G +G+VG +G+GKS++ L
Sbjct: 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 1269 LTPICGGQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHM 1319
L P G I+ DG ++ T +R LR R +V Q P+ SL D L +P +
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY---SSLNPRMTVGDILAEPLRI 396
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
+ + V E +E VGL F+ S GQRQ + +ARAL K+L LD
Sbjct: 397 HGGGS--GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 1379 ECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
E + +D AQ ++L++ G+T + I+H ++ V + D + ++ G +VE+G
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
Query: 1434 NPQTLLQ 1440
+ + +
Sbjct: 513 PTEKVFE 519
|
Length = 539 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-25
Identities = 74/252 (29%), Positives = 116/252 (46%), Gaps = 29/252 (11%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IEF+NV+ RY A+ D+N TIE G + ++G +G+GK++ L + RL G+I
Sbjct: 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DDLKIWSVL 1329
L+DG +I + +LR + V Q LF P H+ L W
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLF---------P-HLTVAENIATVPKLLGWDK- 107
Query: 1330 EKCH--VKEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
E+ E ++ VGL+ + S GQ+Q + +ARAL +L +DE +D
Sbjct: 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1386 AQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
T LQ I K G T++ + H I L + D I ++D G +V+ P +L +
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
Query: 1443 CSVF-SSFVRAS 1453
+ F F S
Sbjct: 228 ANDFVEDFFGES 239
|
Length = 309 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 25/232 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T YK A+ D++ + G G++G GAGK++ L L G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
++G + I T + R PQ LF+ ++R++L + + + + +KEE
Sbjct: 61 INGYS-IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR-----LKGLPKS-EIKEE 113
Query: 1338 VEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
VE +GL + + S G ++ + LA AL+ VL LDE T+ +D + +
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDE-------ILILDHGHLVEQGNPQTL 1438
+ I KG ++I H +MDE I I+ G L G+PQ L
Sbjct: 174 DLILEVRKGRSIILTTH------SMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 75/229 (32%), Positives = 111/229 (48%), Gaps = 19/229 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+ V+ Y L DI+ EGG IVG +GAGKS+++ + RL G IL
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG++I V DLR + +V Q P LFEG+++DN++ M K V+ +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYL 115
Query: 1339 EAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
VGL + + S G+ Q + +AR L + +VL LDE T+ +D + I++ I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 1398 --SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQ 1436
+TVI I H + + D L+ G LVE NPQ
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224
|
Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 12/230 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE + +T + L ++ + G + I+G +G+GKS++L + L G++L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1279 VDGLNI---INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCH 1333
+DG +I + LR R ++ QS LF+ ++ +N+ P + L + E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-- 116
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V E++EAVGL S G ++ + LARAL ++L DE TA +D + ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1394 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
+ I S + G+T I + H + T + D I +L G +V +G P+ L
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + V+ + + L DIN ++E G V I+G +G GKS++L + L G++
Sbjct: 3 LLEIEGVSKSF-GGVEV-LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKC 1332
L+DG PV V Q L ++ DN L+ +
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE------ 109
Query: 1333 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
KE +E VGL F + SG G RQ + +ARAL K+L LDE +DA
Sbjct: 110 RAKELLELVGLAGFEDKYPHQLSG-----GMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1388 TASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILD 1425
T LQ+ + + TV+ + H + + + D +++L
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 11/242 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NV + L D+N IE G V ++G +G GKS++L + L G+IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+DG ++ + P RG A+V Q+ L+ ++ +N+ F + + ++K VKE
Sbjct: 62 IDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDK-RVKEV 117
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL--QNA 1395
+ +GLE + + S GQRQ + LARAL++ KV LDE +N+DA+ ++ +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 1396 ISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVRAS 1453
E G T I + H + + D I++++ G + + G P L + ++F + F+ +
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237
Query: 1454 TM 1455
M
Sbjct: 238 PM 239
|
Length = 338 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL VS +P G VA++G GSGKS++L + ++ GSI G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 669 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+I VPQ + + TI NI +G+ + + E KA + I G +GE+G
Sbjct: 76 AIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG 135
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+ LSGG++ R+A+ARA+ I +LD+ SA+D R I + + +T I+
Sbjct: 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA--LRDVSKGRTTIVIA 193
Query: 788 HNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFWS 826
H + I AD ++V+ G++ G+ +L LY+ W
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-24
Identities = 59/246 (23%), Positives = 117/246 (47%), Gaps = 36/246 (14%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPI 1272
+I+ +NV+ Y S AL +++F I G V I+G G+GKS+ IL L +
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-- 62
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--------------FLFEGSLRDNLDPFH 1318
G+I +DG+ I ++++R + ++ Q+P F E + P
Sbjct: 63 -SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKK 118
Query: 1319 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
M D I + +K VG+E ++ + + S GQ+Q + +A L + +++ D
Sbjct: 119 MKD--IIDDLAKK---------VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 1379 ECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1436
E T+ +D + ++ + + + T+I+I H + + D++++ G L+ QG P+
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPK 227
Query: 1437 TLLQDE 1442
+L ++
Sbjct: 228 EILNNK 233
|
Length = 271 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 18/238 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ Y P AL D+N I G V I+G +GAGKS++L +L L G+IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1279 VDGLNIINTP---VRDLRGRFAVVPQSP------FLFEGSLRDNLDPFHMN---DDLKIW 1326
+G+ I +R LR ++ Q + E L L + + ++
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG--YTSTWRSLFGLF 120
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
S +K + +E VG+ + + S GQ+Q + +ARAL++ K++ DE A++D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1387 QTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
++A + + + + G+TVI H++ D I+ L G +V G L +
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE 238
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 39/239 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N++ + L I+ ++E G V I+G +G+GKS++L L L G I
Sbjct: 2 MIEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1278 LVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC---- 1332
VDG ++ + + LR + +V Q LF H+ +VLE
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFP----------HL-------TVLENVTLAP 102
Query: 1333 -HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
V K E VGL S GQ+Q + +ARAL KV+ DE
Sbjct: 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 1380 CTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
T+ +D + + + + + GMT+I + H + + D ++ +D G ++E+G P+
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPE 221
|
Length = 240 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I F+NV+ Y P AL D++F I G V + G +GAGKS++L ++ G+I
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1278 LVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1330
LV+G ++ R+ LR + VV Q F + D +V E
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQD--------------FRLLPDR---TVYENVAL 102
Query: 1331 --------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
++ V VGL+ + S G++Q + +ARA++ VL D
Sbjct: 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1379 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDE-ILILDHGHLV 1430
E T N+D + I++ G TV+ H + V M +L L+ G LV
Sbjct: 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
V+L+ +SL + G +V ++G GSGKS+L I + +G + G
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 669 -SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTL---DVDISLMVGGDMAYI 723
+ V Q + + +IRDNI DP S ++A L IS + G +
Sbjct: 76 RQVGVVLQENVLFNRSIRDNIALA---DPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
GE+G LSGGQR R+A+ARA+ H I + D+ SA+D + I+ N M +T
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--MHDICAGRTV 190
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
I+ H + + AD ++VM+KG++ GS +L
Sbjct: 191 IIIAHRLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1272
+IE +NV+ + + AL D++ ++ G GI+GR+GAGKS+++ N L R T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-- 58
Query: 1273 CGGQILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWS 1327
G +LVDG ++ +R R R ++ Q L ++ +N+ P L+I
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP------LEIAG 111
Query: 1328 VLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
V K ++E V VGLE S GQ+Q + +ARAL + KVL DE T+
Sbjct: 112 V-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1384 VDAQ-TASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG------- 1433
+D + T SIL + G+T++ I H + V + D + +++ G +VE+G
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
Query: 1434 NPQ 1436
NPQ
Sbjct: 231 NPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 5e-24
Identities = 123/523 (23%), Positives = 204/523 (39%), Gaps = 60/523 (11%)
Query: 933 STSFYLVVLCIF-CMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPG 991
T L VL + +F L +R+F + ++ + +A + G
Sbjct: 43 PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRRGSGD-G 101
Query: 992 GRILNRF--------SSDLYMIDDS--LPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1041
+ L L+ D+ +P L + +GI + V + L LL
Sbjct: 102 LQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFL-LHPWIGILALGGAVVLVGLALL 160
Query: 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1101
L+ ++ R DS R+ + I A M
Sbjct: 161 NN-RATKKPLKEATEASIRANNLADSALRN------------AEVIEA-------MGMMG 200
Query: 1102 EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF--IATMAVIGSRGNLPATFS-TPG-- 1156
+ R L+A S R +L+ F + V+G L TPG
Sbjct: 201 NLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMM 260
Query: 1157 -----LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL-S 1210
LVG AL API +G + F+ + L +L + L
Sbjct: 261 IAGSILVGRAL---APIDGAIGGW-KQFSGARQAYKRLNELLANYPSRDPAM----PLPE 312
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
P +G + +NVT+ L I+F+++ G + I+G +G+GKS++ + +
Sbjct: 313 P----EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVL 1329
P G + +DG ++ +PQ LF G++ +N+ F N D KI
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAA 428
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+ V E + + G +T + G + S GQRQ I LARAL K++ LDE +N+D +
Sbjct: 429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 1388 TASILQNAISS-ECKGMTVITIAHRISTVLNMDEILILDHGHL 1429
L NAI + + +G+TV+ I HR S + +D+IL+L G +
Sbjct: 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-24
Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 70/472 (14%)
Query: 354 IYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQV 413
+Y++ LA R G++ + D D +L +P + + +
Sbjct: 92 VYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVR----VIVPAGVALVVGAAAVAA 147
Query: 414 KFAF--------VSGLAITILLIPVNKWIANLIANATEKMMKQ-KDERIRRTGEILTHIR 464
+GL + + P ++ A A E+ + + + E + + L
Sbjct: 148 IAVLSVPAALILAAGLLLAGFVAP---LVSLRAARAAEQALARLRGELAAQLTDALDGAA 204
Query: 465 TLKMYG--------WEQIFSSWL-MKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 515
L G E+ + R++ L + A +
Sbjct: 205 ELVASGALPAALAQVEEADRELTRAERRAAAATALGA-------ALTLLAAGLAVLGALW 257
Query: 516 FGLFALMGHQLD----AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 571
G A+ +L A +V LA F + P L + R+ L
Sbjct: 258 AGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDA 313
Query: 572 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 631
+ E A + ++D + + VL+ VSL LP
Sbjct: 314 AGPVAEGSAPAAGAV---------GLGKPTLELRDLSAGY-----PGAPPVLDGVSLDLP 359
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQVPW 678
G VA++G GSGKS+LL ++ G + G + G ++ Q
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAH 419
Query: 679 ILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
+ T+R+N+ + + + L+ L + + G +GE G LSGG+R R
Sbjct: 420 LFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQR 479
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LALARA+ + I +LD+ +DA+ A +L + + + +T +L TH+
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 35/229 (15%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1276
+IEF NV+ Y AALHD++ I G + + G +GAGK+++L L+ LTP GQ
Sbjct: 1 MIEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQ 58
Query: 1277 ILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS------ 1327
+ + G ++ R LR R VV Q F + D ++
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQD--------------FRLLPDRTVYENVALPL 104
Query: 1328 -VLEKC------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
V K V + VGLE S G++Q + +ARA++ S +L DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 1381 TANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHG 1427
T N+D + IL +G TVI H +S V + ++ILD G
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L+ +SL + G +A++G G GK++LL I G G I G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 669 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
+I V Q P + T+ +NI FG + ++ V + ++
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN---R 126
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQ 780
Y E LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R L + L
Sbjct: 127 YPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-REELREELKELQRELG 181
Query: 781 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIG 811
T I TH+ + A++ AD + VM++G++ +G
Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 664
+ + L V+ L G ++ + G GSGKS+LL+ I ++ G I
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384
Query: 665 -HASGSIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+A V Q P++ S T+ +NI G+ + Q + ++ DI + G
Sbjct: 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTE 444
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+GE+GV LSGGQ+ R+++ARA+ ++I +LDD LSAVD + IL N +T
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRT 502
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817
I+ H + A++ A ++VM G + G+ LA
Sbjct: 503 VIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ Y P+ AL D++ +I G V ++G +GAGKS++L L L G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1279 VDGLNIINTP---VRDLRGRFAVVPQSPFLFE----------GSL--RDNLDPFHMNDDL 1323
+DG +I +R LR + ++ Q L E G L R
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL-----F 114
Query: 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
++ EK +E VGL + S GQ+Q + +ARAL++ K++ DE A+
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 1384 VDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1440
+D ++ + + + +G+TVI H++ D I+ L G +V G P L
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234
Query: 1441 D 1441
+
Sbjct: 235 E 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 20/232 (8%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I+ +N+T Y P AL ++N IE G VG++G TG+GKS++ LN L + T
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-- 60
Query: 1273 CGGQILVDGLNIINTPV--RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSV 1328
G+I++DG++I + V D+R + +V Q P LFE ++ ++ +N L +
Sbjct: 61 -SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEI 119
Query: 1329 LEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ VK + VGL E + +S S GQ++ + +A + K+L LDE TA +D
Sbjct: 120 ENR--VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1387 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1435
+ + N I + MT+I ++H + V + D I++++ G QG P
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTP 229
|
Length = 287 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-23
Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 18/228 (7%)
Query: 1218 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+IE +NV+ Y AL D+N IE G V IVG +G+GKS++LN L L G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1276 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1329
++L++G ++ ++L R + V Q+ L ++ +N++ P +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA----- 115
Query: 1330 EKCHVKEE--VEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ E +E +GLE + + S S GQ+Q + +ARAL+ + K++ DE T N+D+
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 1387 QTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432
+TA + + K G T+I + H D ++ L G + E+
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-23
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAY 672
++ LP G +A++G G+GK+SLLN++LG + GS+ +G +++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 673 VPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731
V Q P + GT+RDN+L G + + + L+ + + L+ G IG++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 791
GQ RLALARA+ + +LD+ +++DA + ++ A+ ++T ++ TH ++
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALN-AASRRQTTLMVTHQLE 545
Query: 792 AISAADMVVVMDKGQVKWIGSSADLA 817
++ D + VM GQ+ G A+L+
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELS 571
|
Length = 588 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 27/244 (11%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ +E +NV+ + A+ DI+ I+ G V ++G +G GK+++L + G
Sbjct: 3 KPALEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1329
+IL+DG +I + P + +V QS LF P HM ++ LK+ L
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALF---------P-HMTVEENVAFGLKVRKKL 108
Query: 1330 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+K +K VE VGLE F S GQ+Q + LARAL+ KVL LDE + +D
Sbjct: 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 1386 AQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
A+ ++ + G+T + + H L M D I +++ G + + G P+ + +
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
Query: 1443 CSVF 1446
+ F
Sbjct: 229 ATRF 232
|
Length = 352 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 4e-23
Identities = 58/226 (25%), Positives = 109/226 (48%), Gaps = 9/226 (3%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E ++T Y A+ D++F E G G++G GAGK+++L + L G++
Sbjct: 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVP-QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+DG++ + P +R + V+ + + R+NL F + L K + E
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLS--RKEIKARIAE 116
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+ + L ++ FS G +Q + +ARAL+ +L LDE T+ +D +T + I
Sbjct: 117 LSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 1397 SSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+ K G VI +H + V + D +++L G +V +G+ + L
Sbjct: 177 -KQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 7e-23
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SI 670
+ VL VS + G +A++G G+GKS+LL +ILG + T GSI G I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 671 AYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY--I 723
YVPQ + ++RD +L G + KA VD +L VG ++A I
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI 130
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
GE LSGGQ+ R+ LARA+ D+ +LD+ + VD + I + T
Sbjct: 131 GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTI 185
Query: 784 ILCTHNVQAISA-ADMVVVMDKGQVKW 809
++ TH++ + D V+++++ V
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 8e-23
Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 42/249 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IEF+NV+ + P+ LH+I+ I+ G V I+G +G+GKS++L + +L I G +
Sbjct: 1 MIEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1278 LVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-- 1332
+VDGL +N P R +R +V Q +LF H+ + LE
Sbjct: 59 IVDGLK-VNDPKVDERLIRQEAGMVFQQFYLFP----------HL-------TALENVMF 100
Query: 1333 ---HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
V KEE E VGL S GQ+Q + +ARAL K++
Sbjct: 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
Query: 1378 DECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLVEQGNP 1435
DE T+ +D + +L+ +GMT++ + H I + LI +D G + E G+P
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220
Query: 1436 QTLLQDECS 1444
Q L+++ S
Sbjct: 221 QVLIKNPPS 229
|
Length = 240 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 9e-23
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 51/234 (21%)
Query: 1218 LIEFQNVTMRY-------KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
L+E +N+ + K A+ ++F+I+ G +G+VG +G GKS++ + L
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+IL +G +I ++ + + E
Sbjct: 64 EPTSGEILFEGKDIT--------------------------------KLSKEER----RE 87
Query: 1331 KCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT- 1388
+ V E +E VGL S GQRQ I +ARAL + K++ DE + +D
Sbjct: 88 R--VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145
Query: 1389 ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
A IL + E G+T + I+H +S V + D I ++ G +VE G + +
Sbjct: 146 AQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVF 198
|
Length = 268 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-22
Identities = 84/292 (28%), Positives = 141/292 (48%), Gaps = 30/292 (10%)
Query: 1169 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL----CGYQSLSPDWPFQGLIEFQNV 1224
+++L +SS + VSL+R+ ++ EEL +++ P I N
Sbjct: 590 LNILPMVISSIVQAS---VSLKRLRIFLS--HEELEPDSIERRTIKPGEGNS--ITVHNA 642
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
T + LP L+ I F+I G V +VG+ G GKSS+L+AL G +
Sbjct: 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV------- 695
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--G 1342
++G A VPQ ++ SLR+N+ ++ VLE C + ++E + G
Sbjct: 696 ------HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSE-- 1399
T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA I ++ I E
Sbjct: 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
K T I + H IS + +D I+++ G + E G+ Q LLQ + + F+ F+R
Sbjct: 810 LKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGA-FAEFLR 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-22
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L+ ++L + G VA++G G+GKS+L +L G I G
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETL----KACTLDVDISLMVGGDMAYIG 724
+A VPQ P + + ++ +NI +G+ P + E + +A IS + G Y+G
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR---PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
E+GV LSGGQR R+A+ARA+ + I +LD+ SA+DA+ + ++ A+ M +T +
Sbjct: 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-SEQLVQQALETL-MKGRTTL 529
Query: 785 LCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+ H + + AD +VVMD+G++ G+ A+L
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
VL VS L G + A++G GSGKS+++ + G + G
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 670 -IAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
++ V Q P + + +++DNI +G + E + IS + G +GEKG
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG 148
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ + + A+ ++T ++
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPE-RRTVLVIA 206
Query: 788 HNVQAISAADMVVVMDKGQV 807
H + + AD ++V+D G++
Sbjct: 207 HRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 48/222 (21%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------ 668
L +SL + +G VA++G G GKS+LL I G T G + G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP 71
Query: 669 --SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSET-------LKACTLDVDISLM 715
YV Q +PW+ T+ DN+ G +E L+ L
Sbjct: 72 GPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLS------ 122
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
G + AY + LSGG R R+ALARA+ D+ +LD+ SA+DA + +
Sbjct: 123 -GFENAYPHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL------TREQLQ 171
Query: 776 PHML------QKTRILCTHNV-QAISAADMVVVMDK--GQVK 808
+L KT +L TH++ +A+ AD VVV+ G++
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 2e-22
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------I 670
VL ++L + KG VA++G G GKS+LL I G T G + G I
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74
Query: 671 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG----GDMA 721
YV Q +PW+ T+ DN+ G +S +E + ++ L +VG D
Sbjct: 75 GYVFQEDALLPWL---TVLDNVALGLELRGKSKAEA-RERAKEL---LELVGLAGFED-K 126
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
Y + LSGG R R+A+ARA+ + +LD+ A+DA R L + ++ + ++
Sbjct: 127 YPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-REELQDELL--RLWEE 179
Query: 782 TR---ILCTHNVQ-AISAADMVVVMDKG 805
TR +L TH+V A+ AD VVV+
Sbjct: 180 TRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 3e-22
Identities = 69/255 (27%), Positives = 121/255 (47%), Gaps = 42/255 (16%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1271
L+E +N+++ + A+ ++F ++ G +GIVG +G+GKS + A+ L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 1272 -ICGGQILVDGLNIINTP---VRDLRGR-FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
I GG+IL DG ++++ +R +RG+ A++ Q P +L+P D I
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGDQ-IA 112
Query: 1327 SVLEKCHV---KEEVEAVGLETFVKESGIS------------FSVGQRQLICLARALLKS 1371
VL K+E + +E + GI S G RQ + +A AL +
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1372 SKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDH 1426
K+L DE T +D AQ +L+ + E KG +I I H + V + D + ++
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKE-LQRE-KGTALILITHDLGVVAEIADRVAVMYA 229
Query: 1427 GHLVEQGNPQTLLQD 1441
G +VE+G + + ++
Sbjct: 230 GRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-22
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF NVT Y P+ AAL IN +I G V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1279 VDGLNIINTPVRD---LRGRFAVVPQ-SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
V+G ++ + R LR + VV Q L + ++ +N+ F + + K V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRK-RV 117
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E VGL + S G++Q + +ARA++ S +L DE T N+D T + N
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 1395 AI-SSECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1429
+ G TV+ H V ++ L+ G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-22
Identities = 115/446 (25%), Positives = 192/446 (43%), Gaps = 67/446 (15%)
Query: 405 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 464
L LLY V + G+A + + + ++ +A ++ + + + TG ++ ++
Sbjct: 286 LLMLLYDPV-LTLI-GIAFAAINVLALQLVSRRRVDANRRLQQ---DAGKLTGVAISGLQ 340
Query: 465 ---TLKMYGWE-QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT----- 515
TLK G E FS W + K L+ ++ L PTL +
Sbjct: 341 SIETLKASGLESDFFSRWA----GYQAKLLNAQQELGVLTQIL-GVLPTLLTSLNSALIL 395
Query: 516 -FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS-E 573
G +M QL M+ +L +S + P+N+ L + + RL L +
Sbjct: 396 VVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455
Query: 574 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 633
E E+A + S S LS + V +++ T + + E ++ N SL L G
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGY------VELRNITFGY---SPLEPPLIEN-FSLTLQPG 505
Query: 634 SLVAVIGEVGSGKSS-------LLNSILGEMM--------LTHGSIHASGSIAYVPQVPW 678
VA++G GSGKS+ L GE++ + + + S+A V Q +
Sbjct: 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL--ANSVAMVDQDIF 563
Query: 679 ILSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGG 733
+ GT+RDN+ +DP L A DV I+ GG A + E G NLSGG
Sbjct: 564 LFEGTVRDNLTL---WDPTIPDADLVRACKDAAIHDV-ITSRPGGYDAELAEGGANLSGG 619
Query: 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNV 790
QR RL +ARA+ I +LD+ SA+D + + I N L++ T I+ H +
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN-------LRRRGCTCIIVAHRL 672
Query: 791 QAISAADMVVVMDKGQVKWIGSSADL 816
I D ++V+++G+V G+ +L
Sbjct: 673 STIRDCDEIIVLERGKVVQRGTHEEL 698
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 6e-22
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L+ VS + G + ++G G+GK++LL + G + T G I G
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
Query: 669 -SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMVGGD 719
I YVPQ P + T+R+N+ F K + E L+ L+ + V
Sbjct: 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT- 136
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 778
LSGG + RL++A A+ H ++ +LD+ S +D + +R + +
Sbjct: 137 ----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLRELAKE 185
Query: 779 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T +L TH ++ A D V++++ G++ G+ +L
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
|
Length = 293 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 6e-22
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 22/224 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T RY AL ++ T+ G G++G GAGK++++ L LTP G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1334
+DG +++ P + LR R +PQ ++ ++R+ LD ++ + L+ V
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLD--YI-------AWLKGIPSKEV 107
Query: 1335 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
K V E V L K+ S S G R+ + +A+AL+ +L +DE TA +D +
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERI 167
Query: 1391 ILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+N +S + VI H + V ++ +++ +L+ G LV +G
Sbjct: 168 RFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 9e-22
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1219 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
IE +N++ Y AL ++ +IE G V IVG +G+GKS++LN L L G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1277 ILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKIWS 1327
+ VDG +I ++L R V QS P L + +N++ P + K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPK-KE 116
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
E+ E +E VGL + S GQ+Q + +ARAL K++ DE T N+D++
Sbjct: 117 RRERAE--ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 1388 TASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1429
T + + K G T++ + H D I+ L G +
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-21
Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+NVT RY A++++N I G + ++G +G+GK++ + + RL G+I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDDLKIWSVLE-KCHV 1334
+DG +I +LR + V Q LF ++ +N L P L W + +
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP-----KLLKWPKEKIRERA 114
Query: 1335 KEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
E + VGL+ F S GQ+Q + +ARAL +L +DE +D T L
Sbjct: 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1393 QNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
Q + G T++ + H I + D I I+ +G +V+ G P +L
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 1e-21
Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
A+ +NF + G G +G GAGK++ + L L G V G +++ P R +R
Sbjct: 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-RKVRR 66
Query: 1295 RFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
+VPQ + E + R+NL+ L E+ +E +E L +
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP-KDEAEE-RAEELLELFELGEAADRPVGT 124
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRI 1412
+S G R+ + +A +L+ VL LDE T +D +T + + I + + G+T++ H +
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 1413 STVLNM-DEILILDHGHLVEQGNPQTL 1438
+ D I I+DHG ++ +G P+ L
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 1e-21
Identities = 57/239 (23%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I F+NV+ +Y+ L D++F I G IVG G+GKS+I + + + G+I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGS---------LRDNLDPFHMNDDLKIWS 1327
+ I + LR +V Q+P F GS L ++ P+
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY---------- 116
Query: 1328 VLEKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
++ H V E ++ V + + S GQ+Q + +A L + V+ LDE T+ +D
Sbjct: 117 --DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1386 AQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
L + + +T+I+I H +S + D +++++ G + ++G P +
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
|
Length = 269 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 1e-21
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 39/245 (15%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E +N++ Y AL ++ +E G V ++GR GAGK+++L + L G+I
Sbjct: 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1278 LVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCH 1333
+ DG +I P R G A VP+ +F ++ +NL + D +
Sbjct: 61 IFDGEDITGLPPHERARLG-IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ------- 112
Query: 1334 VKEEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+ ++E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 113 -ERDLEEV-YELFPRLKERRNQRAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 1383 ----NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1437
+ + ++ GMT++ + L + D +L++G +V G
Sbjct: 166 GLAPKIVEEIFEAIKELRKEG--GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
Query: 1438 LLQDE 1442
LL D
Sbjct: 224 LLADP 228
|
Length = 237 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-21
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 43/189 (22%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
L+ VSL L G +VA++G GSGKS+LL +I G + T G I G +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-----KDIAK 65
Query: 679 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738
+ +R I Y PQ LSGGQR R+
Sbjct: 66 LPLEELRRRIG----YVPQ--------------------------------LSGGQRQRV 89
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAAD 797
ALARA+ D+ +LD+ S +D +L + +T I+ TH+ A AAD
Sbjct: 90 ALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAAD 148
Query: 798 MVVVMDKGQ 806
V+V+ G+
Sbjct: 149 RVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 17/220 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ ++T Y L DI+ ++ G G +G GAGK++ + + L G+I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1335
DG + + R + ++P + NL +L++ + L K +
Sbjct: 59 FDGKSYQKN--IEALRRIGALIEAPGFY-----PNLTARE---NLRLLARLLGIRKKRID 108
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E ++ VGL+ K+ FS+G +Q + +A ALL + +L LDE T +D L+
Sbjct: 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL 168
Query: 1396 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
I S G+TV+ +H +S + + D I I++ G L+E+G
Sbjct: 169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-21
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 11/277 (3%)
Query: 277 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG--YVLAIALGLTSILKSFFDTQ 334
+ LL ++ + PLLL + + L G+G LAI L +L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 335 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHD 394
+ +L ++R + + ++ L + ++ S GE+ + ++ D + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 395 AWSLPFQIGVALYLL--YTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDER 452
+ V +++ Y K V LAI LLI ++ +A + K K +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVL-LAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 453 IRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF---WATTPT 509
E L+ IRT+K +G E+ ++ E + K + F +
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELE--RYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 510 LFSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPL 545
++L FG + ++ L VF L+L L PL
Sbjct: 238 SYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 3e-21
Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 8/221 (3%)
Query: 1218 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I +T R++ A+ ++FT++ G G++G GAGK++ L L L G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1334
VDG +++ P + R R V S L++ + R+NL+ F LK + + +
Sbjct: 61 FATVDGFDVVKEP-AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR--L 117
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E + +G+E + FS G RQ + +ARAL+ VL LDE T +D L+
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1395 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
I G ++ H + V + D +++L G +V +G
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 4e-21
Identities = 65/241 (26%), Positives = 112/241 (46%), Gaps = 42/241 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
+I ++++ RY + AL D++F++ G V IVG G+GKS++ LN L
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---A 61
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKIWSVLEK 1331
G I V G+ + V D+R + +V Q+P DN F + DD+ LE
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNP--------DN--QFVGATVQDDVAF--GLEN 109
Query: 1332 C---------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
V + + VG+E F+ S GQ+Q + +A L ++ LDE T+
Sbjct: 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 1383 NVDAQ-------TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435
+D + T L+ KG+TV++I H + D +++++ G ++E+G P
Sbjct: 170 MLDPRGRREVLETVRQLKEQ-----KGITVLSITHDLDEAAQADRVIVMNKGEILEEGTP 224
Query: 1436 Q 1436
+
Sbjct: 225 E 225
|
Length = 279 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 6e-21
Identities = 70/250 (28%), Positives = 116/250 (46%), Gaps = 48/250 (19%)
Query: 1219 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
IE +N++ + AL++++ I G G++G +GAGKS+++ + L G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1277 ILVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DD--- 1322
+LVDG ++ ++L R + ++ Q H N D+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ----------------HFNLLSSRTVFDNVAL 105
Query: 1323 -LKI--WSVLE-KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
L++ E K V E +E VGL S GQ+Q + +ARAL + KVL D
Sbjct: 106 PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 1379 ECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG- 1433
E T+ +D T SIL+ I+ E G+T++ I H + V + D + ++D G LVEQG
Sbjct: 166 EATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
Query: 1434 ------NPQT 1437
+P+
Sbjct: 225 VSEVFSHPKH 234
|
Length = 343 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 6e-21
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 32/246 (13%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E +N++ Y P+ AL +IN I G V I+G +GAGKS++L + RL G I
Sbjct: 1 MLEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1278 LVDGLNIINTPVRDLRG----------RFAVVPQSPFL---------FEGSLRDNLDPFH 1318
L++G +I + LR + ++ + L ++ + R L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1319 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
D + S LE+ VGL + S GQ+Q + +ARAL + ++ D
Sbjct: 120 EEDKERALSALER---------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1379 ECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1435
E A++D +T+ + + + K G+TVI H++ D I+ L G +V G P
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230
Query: 1436 QTLLQD 1441
L +
Sbjct: 231 SELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 7e-21
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 19/210 (9%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ V+L +P GSLVA++G GSGKS+LL I G G I +G
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK 73
Query: 670 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
I +V Q + T+RDNI FG + + + + ++ + L+ + +G++
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLELV---QLEGLGDRYP 128
Query: 729 N-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
N LSGGQR R+ALARA+ + +LD+ A+DA+V + + S + T + T
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 788 HN-VQAISAADMVVVMDKGQVKWIGSSADL 816
H+ +A+ AD +VVM G+++ IGS ++
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 9e-21
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ ++L+ VSL + G VA++G GSGKS+LL +LG GS+ G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+ V Q ++SG+I +NI G E + L DI M G
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
I E G LSGGQR RL +ARA+ I + D+ SA+D + I+S ++ L+ T
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA-IVSESLER---LKVT 637
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817
RI+ H + I AD + V+D G+V G+ +L
Sbjct: 638 RIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-20
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L+ +SL + G VA++G GSGKS+L+N I G I G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 669 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+A V Q + + TI +NI +G+ D L A + + G IGE
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
GV LSGGQR RLA+ARA+ + I +LD+ SA+D + R + A + M +T ++
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV--QAALERLMQGRTTLVI 524
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL 816
H + I AD +VVMD G++ G+ +L
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-20
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 669
E++ VL +SL L +G +A++G GSGKS+LL + G++ G I G
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 670 ------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
I+ + Q P++ T+R+N+
Sbjct: 71 KALSSLISVLNQRPYLFDTTLRNNL----------------------------------- 95
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
G SGG+R RLALAR + + I +LD+ +D R +LS ++ + KT
Sbjct: 96 ---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS--LIFEVLKDKTL 150
Query: 784 ILCTHNVQAISAADMVVVMDKGQVK 808
I TH++ I D ++ ++ G++
Sbjct: 151 IWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 67/250 (26%), Positives = 119/250 (47%), Gaps = 21/250 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
LIE + VT + L ++ + G + I+G +G+GKS++L + L G+I
Sbjct: 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1278 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1333
L+DG +I +L R R V+ Q LF ++ +N+ F + + K+ L +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIREL 124
Query: 1334 VKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
V ++E VGL + SG G R+ + LARA+ ++L LDE T+ +D
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSG-----GMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1388 TASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECS 1444
+A ++ I + G+TVI + H + ++L + D + +L G ++ +G P+ LL +
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDP 239
Query: 1445 VFSSFVRAST 1454
F
Sbjct: 240 WVRQFFNGIR 249
|
Length = 263 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 21/237 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGG 1275
+EF++V+ Y S AL+DI+F+I G+ ++G G+GKS+I +N L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-------NDDLKIWS 1327
+I VDG+ + V D+R + +V Q+P F G+ + F + + +KI
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-- 123
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-A 1386
V++ + VG+ ++ + S GQ+Q + +A L K++ LDE T+ +D A
Sbjct: 124 ------VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 1387 QTASILQNAIS-SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
IL+ + +TVI+I H I D++L+LD G L+ QG+P +
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234
|
Length = 282 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPF 1317
S++L + L G IL+DG + R LR R VV Q P LF E ++R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1318 HMNDDLK--IWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLARALLKSSKV 1374
+ + LE+ VGL F+ +E + S GQ+Q + +ARALLK K+
Sbjct: 61 LRDKEADARAEEALER---------VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 1375 LCLDECTA 1382
L LDE TA
Sbjct: 112 LLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N+ + L I+ T++ G V I+G +G+GKS++L + L G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1279 VDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV-- 1334
+DGL + + + +LR + +V Q LF H+ +VLE +
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP----------HL-------TVLENITLAP 101
Query: 1335 -------KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
K E E VGL S GQ+Q + +ARAL + KV+ DE
Sbjct: 102 IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 1380 CTANVDAQTA-----SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
T+ +D + + A GMT++ + H + + D ++ +D G +
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEE----GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 4e-20
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ VL+ ++L + G + ++G GSGKS+L + HG + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL----DVDISLMVGG 718
+ V Q + S +IRDNI +P + + A L D L G
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALC---NPGAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
+ +GEKG NLSGGQR R+A+ARA+ I + D+ SA+D + I+ N M
Sbjct: 584 NTE-VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREIC 640
Query: 779 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFW 825
+T I+ H + + A D ++V++KGQ+ G +L LY+ W
Sbjct: 641 RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 6e-20
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
VL V+L + G V ++G G GKS+LL I G T G I G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 670 -IAYVPQVPWIL--SGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 719
IA V Q + L T+ +NI FG K + E K L+
Sbjct: 76 GIAMVFQ-NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE---------- 124
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 778
+ K + LSGGQR R+ALARA+ +++LD+ LS +DA++ R ++ + I H
Sbjct: 125 -HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL-RVLMRSEIKKLHER 182
Query: 779 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T I TH+ V+A++ AD +VVM+ G+++ +G+ +L
Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 7e-20
Identities = 68/275 (24%), Positives = 112/275 (40%), Gaps = 48/275 (17%)
Query: 1188 SLERVLEY---MDVPQEELCGYQSLSPDWPFQ----GLIEFQNVTMRYKPSLPAA---LH 1237
+L R+ E+ ++ Q + F I +N+++R P L
Sbjct: 355 TLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR----TPDGQTLLS 410
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
++NF + G ++ I G +GAGK+S+L AL L P G+I + P
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI--------SMPADS---ALL 459
Query: 1298 VVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG--- 1351
+PQ P+L +G+LR+ L + D ++ +VL K GL +
Sbjct: 460 FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV---------GLGDLAERLDEED 510
Query: 1352 ---ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1408
S G++Q + AR LL K + LDE T+ +D +T L + E TVI++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570
Query: 1409 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1443
HR T+ N + L++ Q L
Sbjct: 571 GHR-PTLWNFHSRQL----ELLDDAGGQNLKPPAL 600
|
Length = 604 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
+L+ +S +PKG + ++G GSGKS+LL + G + G + G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 670 ----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL-KACTLDVDISL-MVGGDMAY 722
+AYVPQ P G T+ + +L G+ Y K V+ +L ++G + +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGR-YPHLGLFGRPSKEDEEIVEEALELLG--LEH 130
Query: 723 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
+ ++ V+ LSGG+R R+ +ARA+ + I +LD+ S +D +L
Sbjct: 131 LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL 190
Query: 782 TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 812
T ++ H++ A AD ++++ G++ G+
Sbjct: 191 TVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 72/241 (29%), Positives = 111/241 (46%), Gaps = 34/241 (14%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1273
IE +++ + Y AL DIN I ++G +G GKS++L L R L P
Sbjct: 8 IEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1274 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G++L+DG NI V +LR R +V Q P F S+ DN+ L++ + +K
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-----AYGLRLHGIKDK 120
Query: 1332 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ E VE L VK +S + S GQ+Q +C+ARAL +VL +DE T+
Sbjct: 121 -ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1384 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQT 1437
+D + ++ I+ K T++ + H R+S D G LVE G
Sbjct: 180 LDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELVEFGPTDK 234
Query: 1438 L 1438
+
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 1e-19
Identities = 73/258 (28%), Positives = 118/258 (45%), Gaps = 30/258 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ F +VT R+ L +NF++ G +V ++G +G+GKS+IL L L PI GQI
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1279 VDGLNIINTP-------------VRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDD 1322
V+G + + P +R +R + +V QS LF ++ DN P +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--- 115
Query: 1323 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
L + + E ++ VGL S GQ+Q + +ARAL KV+ DE T+
Sbjct: 116 LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175
Query: 1383 NVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1438
+D + + N I +SE +T++ + H + D + D G +VEQG P +
Sbjct: 176 ALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
Query: 1439 L----QDECSVFSSFVRA 1452
++ F S V A
Sbjct: 235 FRQPKEERTREFLSKVIA 252
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 2e-19
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 53/204 (25%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
VL+ +SL + G +V ++G G+GKS+LL ++ G + + G I G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 670 ----IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
IAYVPQ L+ +A++ +
Sbjct: 71 LARKIAYVPQA--------------------------LELL------------GLAHLAD 92
Query: 726 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
+ N LSGG+R R+ LARA+ I +LD+ S +D +L KT +
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 785 LCTHNV-QAISAADMVVVMDKGQV 807
+ H++ A AD V+++ G++
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 2e-19
Identities = 58/243 (23%), Positives = 109/243 (44%), Gaps = 28/243 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + +T R+ L AL D++F++ G G++G GAGK+++ N + G +L
Sbjct: 1 LEVRGLTKRFG-GL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
Query: 1279 VDGLNIINTPVRDLRGR-----FAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEK 1331
DG +I P ++ F Q P LF ++ +N+ + +
Sbjct: 59 FDGEDITGLPPHEIARLGIGRTF----QIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 1332 CHVKEEVEA-------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+E E VGL S GQ++ + +ARAL K+L LDE A +
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 1385 D----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+ + A +++ +G+TV+ + H + V+++ D + +LD G ++ +G P +
Sbjct: 175 NPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231
Query: 1440 QDE 1442
+
Sbjct: 232 NNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (236), Expect = 2e-19
Identities = 61/189 (32%), Positives = 107/189 (56%), Gaps = 14/189 (7%)
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH- 1333
G+IL+DG++I + ++DLR F++V Q P LF S+ +N+ +D V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKEDATREDVKRACKF 1334
Query: 1334 --VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+ E +E++ +T V G S S GQ+Q I +ARALL+ K+L LDE T+++D+ +
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1390 SILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDH----GHLVE-QGNPQTLLQDE 1442
+++ I + T+ITIAHRI+++ D+I++ ++ G V+ G + LL +
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQ 1454
Query: 1443 CSVFSSFVR 1451
V+ +V+
Sbjct: 1455 DGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 2e-19
Identities = 71/242 (29%), Positives = 125/242 (51%), Gaps = 28/242 (11%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1272
I+F+NV Y P P L +I+F +E G+ V +VG TG+GKS+++ NAL + +
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-- 60
Query: 1273 CGGQILVDGLNII----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD--P--FHMNDD 1322
G I + G +I N ++ LR + ++V Q P LFE ++ +++ P F ++D
Sbjct: 61 -SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 1323 LKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
K + ++ VGL E + +S S GQ + + +A + ++LCLDE
Sbjct: 120 EA------KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1382 ANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439
A +D + ++Q + G TVI + H + V D++L+L+HG L++ +P+ +
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233
Query: 1440 QD 1441
D
Sbjct: 234 SD 235
|
Length = 287 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-19
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 12/233 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE N++ R+ AL D+N + G+ V ++G +G+GKS++L + L G+I
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
++G + RD + F V Q LF+ ++RDN+ F + + K K V+E
Sbjct: 59 LNGQDATRVHARDRKIGF--VFQHYALFKHLTVRDNI-AFGL-EIRKHPKAKIKARVEEL 114
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN--- 1394
+E V LE S GQRQ + LARAL +VL LDE +DA+ L++
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174
Query: 1395 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF 1446
+ E TV + H + + D I+++ +G + + G+P + + F
Sbjct: 175 KLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669
L ++ +P G VA++G GSGKS++ N + + G I G
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA----CTLDVDISLMVGGDMAYIGE 725
+A V Q + + TI +NI + + + S + +A +D I+ M G IGE
Sbjct: 419 VALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGE 476
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 783
GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I + A+ LQK R
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-AL---DELQKNRTS 532
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
++ H + I AD ++V++ G++ G+ A+L
Sbjct: 533 LVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 85.9 bits (214), Expect = 4e-19
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
+ L+ +SL + KG + ++G G+GK++L+ ILG + G I
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-------------- 57
Query: 679 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG---VNLSGGQR 735
+ GK D + E +K I + Y + LSGG +
Sbjct: 58 ---------KVLGK--DIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKLSGGMK 101
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 795
RLALA+A+ H ++ +LD+ S +D + R + KT +L +H ++
Sbjct: 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAER 160
Query: 796 -ADMVVVMDKGQV 807
D V +++ G++
Sbjct: 161 LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 4e-19
Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 11/230 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
+I +NV+ Y PA L +IN I+ G +GI+G+ G+GKS++ LN L R
Sbjct: 1 MIRLENVSYSYPDGTPA-LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---K 56
Query: 1275 GQILVDGLNIIN-TPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G++LV G++ + + ++ +R +V Q+P F G + D ++L + + +
Sbjct: 57 GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEE-DLAFGPENLCLPPIEIRK 115
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SI 1391
V + +GLE + S + S GQ Q + LA L + L DE T+ +D + ++
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441
L+ KG T++ I H + + + D I+++D G +V +G P+ +L D
Sbjct: 176 LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225
|
Length = 274 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 6e-19
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668
VL +SL + KG + A+IG G+GKS+LL +ILG + + G I G
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74
Query: 669 -SIAYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY 722
I YVPQ V T++D +L G+ + K VD +L VG D+
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD 134
Query: 723 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
IGE LSGGQ+ R+ LARA+ D+ +LD+ + VD + + + +
Sbjct: 135 RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK-EIYDLLKELRQEG 189
Query: 781 KTRILCTHNVQAISA-ADMVVVMDKGQV 807
KT ++ TH++ + A D V+ +++ +
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 8e-19
Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 23/240 (9%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I FQ V RY+ P AL+D+N +I G+ V I+G TG+GKS++ LN L + T
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS- 61
Query: 1273 CGGQILVDGLNII-----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKI 1325
G + + G +I N ++ LR + +V Q P LFE ++ ++ MN +
Sbjct: 62 --GTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118
Query: 1326 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+K +E +E VGL E + S S GQ + + +A L +VL LDE TA +
Sbjct: 119 EDAKQK--AREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1385 DAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441
D + + + KG+T + + H + D+I+++ G + QG P+ + D
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236
|
Length = 290 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-18
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMML--------THGSIHA 666
VL ++ L G +VA++G GSGKS+ L G+++L H +H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 667 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQS-YSETLKACTLDVDISLMVGGDMAYIGE 725
+A V Q P + SG++R+NI +G P KA I G +GE
Sbjct: 556 Q--VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 783
KG LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ ++ + +R
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC------EQLLQESRSRASRTV 667
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+L H + + AD ++V+ KG V +G+ L
Sbjct: 668 LLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668
L+ ++L + G V ++G G GK++ L I G T G I+ G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 669 --SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
IA V Q P + T+ DNI FG + E ++ A L ++
Sbjct: 71 DRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE------ 121
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ K LSGGQR R+AL RA+ ++++D+ LS +DA++ R + +
Sbjct: 122 ---HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL-RVQMRAELKRLQ 177
Query: 778 M-LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 811
L T I TH+ V+A++ AD + VM+ GQ++ IG
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 26/230 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +NV+ Y + AL ++ I+ G ++G +G GK+++L + G+IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-- 1330
+DG +I N P + V Q+ LF P H+ ++ L++ + +
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALF---------P-HLTVFENIAFGLRLKKLPKAE 106
Query: 1331 -KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
K V E ++ V LE + S GQ+Q + +ARAL+ KVL LDE +D +
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 1390 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
+Q + K G+T + + H L M D I +++ G + + G P+
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPE 216
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-18
Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 92/425 (21%)
Query: 1079 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138
E L G T+ ++ E + KF LY + L A+ SL + ++ FI++ A
Sbjct: 241 EALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI---LKANFMESLHIGMINGFILASYAF 297
Query: 1139 MAVIGSR---GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1195
G+R +L G + I LLG +S F T + L + EY
Sbjct: 298 GFWYGTRIIISDLSNQQPNNDFHG-----GSVISILLGVLISMFMLT----IILPNITEY 348
Query: 1196 MD-----------VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALH-DINFTI 1243
M + ++ L I+F+NV Y ++ D+NFT+
Sbjct: 349 MKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTL 408
Query: 1244 EGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302
G VG +G GKS+IL + RL P G I+ D N+ + ++ R + VV Q
Sbjct: 409 TEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQD 468
Query: 1303 PFLFEGSLRDNL-------------------DPFHMNDDL-KIWSVLEKC---------- 1332
P LF S+++N+ D ++ K S KC
Sbjct: 469 PLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528
Query: 1333 -------HVKEEVEAV-----------------------GLETFVKESGISFSVGQRQLI 1362
+++ + + ET V + S GQ+Q I
Sbjct: 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588
Query: 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG---MTVITIAHRISTVLNMD 1419
+ARA++++ K+L LDE T+++D ++ ++Q I++ KG I IAHR+ST+ +
Sbjct: 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN-LKGNENRITIIIAHRLSTIRYAN 647
Query: 1420 EILIL 1424
I +L
Sbjct: 648 TIFVL 652
|
Length = 1466 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 2e-18
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 1219 IEFQNVTMRYKPSLPAA---LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
IE +N+++ + P L D++F I+ G ++ I G +G GKSS+ AL L P G
Sbjct: 1 IELENLSL----ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS-VLEKCHV 1334
+I +PQ P+L G+LR+ L + W VL
Sbjct: 57 RI-----------GMPEGEDLLFLPQRPYLPLGTLREQL--------IYPWDDVL----- 92
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
S G++Q + AR LL K + LDE T+ +D ++ L
Sbjct: 93 --------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1395 AISSECKGMTVITIAHRIS 1413
+ G+TVI++ HR S
Sbjct: 133 LLKEL--GITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 16/230 (6%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS---SILNALFRLTPICGG 1275
+E ++ RY AL D++FT+ G V ++G GAGKS S+L L+ G
Sbjct: 2 LEVAGLSFRYGAR--RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE---G 56
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFHMNDDLK-IWSVLEKCH 1333
QI V G ++ P L R VV Q P L + S+R NL +H L + +
Sbjct: 57 QISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLR-YHA--ALHGLSRAEARAR 112
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ E + +GL + + G R+ + +ARALL +L LDE T +D + + +
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 1394 NAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441
+ + + G++V+ H + + D +++L G ++ G L
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-18
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L ++ ++ G+ VG+VG GAGK+++L A+ G +LV G ++ R R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 1296 FAVVPQSPFL-FEGSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1350
A VPQ L FE +R ++ P H + W+ ++ V+ +E G+ F
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTP-HRSR-FDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1406
S S G+RQ + LARAL +++ VL LDE TA++D +T +++ + G T +
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD---GKTAV 193
Query: 1407 TIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLL 1439
H L++ DE+++L G + G P +L
Sbjct: 194 AAIHD----LDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 3e-18
Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 12/228 (5%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+N+ YK ++D++ + G VG++G GAGK++ + L G+IL+D
Sbjct: 8 ENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 1282 LNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCHVKE 1336
+I P+ R R + +PQ +F ++ DN+ DLK K +
Sbjct: 66 EDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK--AERKEELDA 122
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+E + S S G+R+ + +ARAL + K + LDE A VD +Q I
Sbjct: 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
Query: 1397 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
+ +G+ V+ H + L++ D I+ G ++ +G+P+ ++ +E
Sbjct: 183 KHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 68/236 (28%), Positives = 115/236 (48%), Gaps = 19/236 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-----LTPI 1272
LIE +++ Y S AL++INF +++ ++G GAGKS+ LFR L P
Sbjct: 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKST----LFRHFNGILKP- 56
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G +L+ G I +R++R +V Q+P +F ++ ++ +N L +V
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH 116
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ V + +GLE S G+++ + +A + +VL LDE TA +D Q
Sbjct: 117 R--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 1391 ILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL-LQDE 1442
L + ++ E GMTVI H++ V M D I ++D G +V G + + LQ +
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 5e-18
Identities = 91/330 (27%), Positives = 145/330 (43%), Gaps = 40/330 (12%)
Query: 505 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 564
A+T ++ + G ++ +L V + N LI L+ I F + +
Sbjct: 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFIT---QIFEARAK 305
Query: 565 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 624
L F + + E+ A++P L N AV + T + Q V
Sbjct: 306 LEDFFDLEDSVFQREEPADAPE-----LPNVKG---AVEFRHIT---FEFANSSQGV--F 352
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIA 671
VS G VA++G G+GK++L+N + T G I G SIA
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 672 YVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729
V Q + + +IR+NI G+ D + Y A D + G D +GE+G
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNR 471
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV-ARWILSNAIMGPHMLQKTR--ILC 786
LSGG+R RLA+ARA+ + I +LD+ SA+D + AR + NAI L+K R +
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR--VKNAI---DALRKNRTTFII 526
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL 816
H + + AD+V+ +D+G++ GS +L
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQ 675
V L+ VSL +P G LVA++G GSGK++LL I G G+I A+
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 676 VPWILSG-------TIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMAYIGEK 726
V ++ T+ DN+ FG P+S E + + L+ + ++ ++
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV---QLDWLADR 132
Query: 727 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMGPHML 779
LSGGQR R+ALARA+ + +LD+ A+DA+V RW+ L L
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH------DEL 186
Query: 780 QKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
T + TH+ +A+ AD VVVM+KG+++ +G+ ++
Sbjct: 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 6e-18
Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 17/229 (7%)
Query: 1218 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+I N T + P AL+ ++ I G V ++G GAGKS++LNA+
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFL---FEGSLRDNLDPFHMNDDLKIWSVLE- 1330
GQIL+DG+++ V A V Q P E ++ +NL + S
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALN 120
Query: 1331 ---KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ +E + + GLE + + S GQRQ + L A L K+L LDE TA +D
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1386 AQTASILQNA---ISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLV 1430
+TA + I E K +T + + H + L+ LI L G +V
Sbjct: 181 PKTAEFVMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL VS + G + ++G G+GKS+L+ ++ + G I G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 669 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
S+ +PQ P + SGTIR N+ F + D + Y L+ + E G
Sbjct: 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY-GALR------------------VSEGG 123
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+NLS GQR L LARA+ + +LD+ +++D I + T +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI--QKTIREEFTNSTILTIA 181
Query: 788 HNVQAISAADMVVVMDKGQVKWIGS 812
H ++ I D ++VMD G+VK
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 7e-18
Identities = 72/244 (29%), Positives = 110/244 (45%), Gaps = 33/244 (13%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC- 1273
IE +N+ + Y AL +IN I ++G +G GKS++L +L R L P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1274 -GGQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G++L DG +I + V +LR R +V Q P F S+ DN+ ++ + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI-----AYGPRLHGIKD 113
Query: 1331 KCHVKEEVEA----VGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
K + E VE L VK+ S + S GQ+Q +C+ARAL +VL LDE T+
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQ 1436
+D ++ I K T++ + H RIS D G LVE G +
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS-----DRTAFFYDGELVEYGPTE 228
Query: 1437 TLLQ 1440
+
Sbjct: 229 QIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 8e-18
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 63/218 (28%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + +T R+ + A L ++ ++ G ++G GAGKS+++ L L G+IL
Sbjct: 1 LELRGITKRF-GGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
VD G P
Sbjct: 59 VD---------------------------GKEVSFASPRDARR----------------- 74
Query: 1339 EAVGLETFVKESGISF----SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+GI+ SVG+RQ++ +ARAL +++++L LDE TA + L
Sbjct: 75 -----------AGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1395 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
I G+ VI I+HR+ V + D + +L G +V
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-18
Identities = 61/234 (26%), Positives = 119/234 (50%), Gaps = 15/234 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
++E +++ Y P AL INF E G V ++G GAGKS++ N + + T
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---S 56
Query: 1275 GQILVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G++L+ G + + ++R +V Q+P LF ++ +++ +N L V +
Sbjct: 57 GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ VKE ++AVG+E F + S GQ++ + +A L +++ LDE T+ +D AS
Sbjct: 117 R--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1442
+ + +G+T+I H + V + D++ ++ G ++++G P+ + D
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDI 228
|
Length = 275 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 62/210 (29%), Positives = 85/210 (40%), Gaps = 65/210 (30%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
Q VLN VSL + G +VA++G GSGKS+LL I G GSI G
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 669 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
I V Q + T+ +NI G
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------- 100
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-----NAIMGPH 777
LSGGQ+ R+ALARA+ D+ +LD+ SA+D R + + A
Sbjct: 101 -------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA----- 148
Query: 778 MLQKTRILCTHNV-QAISAADMVVVMDKGQ 806
L T +L TH++ +A AD VVV+ G+
Sbjct: 149 QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-17
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668
+ N+VL ++L +P VA++G GSGKS+L + ++G LT G I G
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 669 ----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+A V Q P +L+ T N+ G++ + + L+ L + G +G
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 783
E+G NLS GQ+ LALAR + I +LD+ + +D+ + I L R
Sbjct: 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-------QQALAAVRE 524
Query: 784 ----ILCTHNVQAISAADMVVVMDKGQV 807
++ H + I AD ++V+ +GQ
Sbjct: 525 HTTLVVIAHRLSTIVEADTILVLHRGQA 552
|
Length = 592 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 1e-17
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------- 669
+ L VSL + KG V +IG GSGKS+LL + G + T G + G
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 670 -------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGD 719
+ V Q P + T+ D + FG ++ + V +VG
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLGLPREEIEERVAEALELVG-- 127
Query: 720 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG--P 776
+ + ++ NLSGGQ+ R+A+A + G +I +LD+ + +D + R +L ++
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL--ELLKKLK 185
Query: 777 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
KT I+ TH+++ + AD VVV+D G++ G A++
Sbjct: 186 EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
|
Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+N++ ++ + L D+N TIE G I+G +G+GKS++LN + L GQ+ ++G
Sbjct: 2 KNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 1282 ---LNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ + R + + Q+ L E ++ +NLD + K S EK K+
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD---LGLKYKKLSKKEKREKKK 116
Query: 1337 EV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E E VGL +K+ S G++Q + LARA+LK ++ DE T ++D + + +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1396 ISSECK-GMTVITIAH 1410
+ G T+I + H
Sbjct: 177 LLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
++ +SL + KG + ++G G+GK++ L + GE+ T G+ + +G
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73
Query: 669 --SIAYVPQ---VPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGG 718
S+ Y PQ + L T+R+++ F G +V++ L V G
Sbjct: 74 RQSLGYCPQFDALFDEL--TVREHLRFYARLKGLP---------KSEIKEEVELLLRVLG 122
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
++ LSGG + +L+LA A+ G + +LD+ S +D R I +
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-------L 175
Query: 779 LQKTR-----ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
+ + R IL TH++ A D + +M G+++ IGS +L
Sbjct: 176 ILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 9/224 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N+ +Y A+ ++F + G G++G GAGK++ + L L G+
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
V G +++ P R++R R +V Q + + + +NL + + + + E
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP-GAERRE-RIDEL 115
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
++ VGL ++S G R+ + +AR+L+ +VL LDE T +D QT + + I
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 1398 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1438
E GMT++ H + + D + I+DHG ++ +G P+ L
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 2e-17
Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 1218 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLT 1270
+I+ +NV+ +Y+ + AL D+N ++ G + I+GR G+GKS+I +NAL L
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61
Query: 1271 PICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMND 1321
P G++ VDGL+ + + D+R + +V Q+P DN D +
Sbjct: 62 P-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP--------DNQIVATIVEEDVAFGPE 112
Query: 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
+L I + V E ++ VG+ + + + S GQ+Q + +A L + + DE T
Sbjct: 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 1382 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1436
A +D + N I K G+T+I I H + + D I+++D G +V +G P+
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPK 229
|
Length = 280 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 3e-17
Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 22/239 (9%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
I QNV+ Y+ P AL D+N TIE G+ +G TG+GKS+I+ L L G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1276 QILVDGLNIINTP----VRDLRGRFAVV---PQSPFLFEGSLRD-NLDP--FHMNDDLKI 1325
+ VD I +T ++ +R + +V P+S E L+D P F ++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1326 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
EK + VG+ E+ +++ S GQ + + +A L K+L LDE TA +
Sbjct: 123 ALAREKLAL------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1385 DAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
D + L GMT++ + H + V N D + +L+ G LV G P+ + QD
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
|
Length = 280 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-17
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 40/231 (17%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN---TPVRD 1291
A+ I+ T+ G +G+VG +G+GKS++ AL RL P G+I DG +I +R
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNL-------DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL 1343
LR R VV Q P+ GSL + + +++ S E+ V E +E VGL
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVIEALEEVGL 415
Query: 1344 -----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQN 1394
+ E FS GQRQ I +ARAL+ +++ LDE T+ +D AQ +L++
Sbjct: 416 DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 1395 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQT 1437
+ G++ + I+H ++ V + ++++ G +VEQG NPQ
Sbjct: 472 L--QQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQH 520
|
Length = 534 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 45/218 (20%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L +SL + KG V ++G G GK++LL I G T G+I+ G
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 669 -----SIAYVPQVPWILSGTIRDNI---LFGKNYDPQSYSETLKACTLD-VDISLMVGGD 719
S A P + T+ DNI L + +E + A LD V + G +
Sbjct: 79 GIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERV-AELLDLVGLP---GSE 128
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
Y G+ LSGGQ+ R+ALARA+ + +LD+ LSA+DA+V R L I L
Sbjct: 129 RKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARV-REHLRTEIRQ---L 180
Query: 780 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 812
Q+ T I+ TH+ +A+S AD +VVM+ G ++ +G+
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 4e-17
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 28/234 (11%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + ++ + AL ++ T+ G ++G GAGKS+++ L + P G+I
Sbjct: 8 LLELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1278 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-------------PFHMNDDL 1323
L+DG + ++P L A V Q E SL NL F + D
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQ-----ELSLVPNLSVAENIFLGREPTRRFGLID-- 118
Query: 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ + +E + +GL+ S+ QRQ++ +ARAL ++VL LDE TA
Sbjct: 119 --RKAMRR-RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1384 VDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1435
+ + L + I + +G+ +I I+HR+ V + D I +L G +V
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (207), Expect = 4e-17
Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 13/243 (5%)
Query: 1209 LSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268
L D+ + E +N Y LHD+N I+ +G +G GKS+ L L +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130
Query: 1269 LTPICGG-----QILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND 1321
L + G +I G N + + +LR R +V Q P FE S+ DN+ N+
Sbjct: 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCL 1377
+ +LEK V++ +++ L VK+ +G + S GQ+Q +C+ARA+ +VL +
Sbjct: 191 GINDRKILEKI-VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
DE T+ +D + ++ I K ++I + H ++ + DE + G + E G +
Sbjct: 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309
Query: 1437 TLL 1439
T+
Sbjct: 310 TIF 312
|
Length = 329 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-17
Identities = 58/217 (26%), Positives = 106/217 (48%), Gaps = 26/217 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L +++ +E G I+G TG+GKS +L + G+IL++G +I N P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMND------DLKIWSVLEKCHVKEEV----EAVGLET 1345
+ VPQ+ LF HM LK V +K ++ +V E +G++
Sbjct: 73 ISYVPQNYALFP----------HMTVYKNIAYGLKKRKV-DKKEIERKVLEIAEMLGIDH 121
Query: 1346 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GM 1403
+ + S G++Q + +ARAL+ + K+L LDE + +D +T L+ + K G+
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 1404 TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
TV+ + H + D++ I+ +G L++ G P+ +
Sbjct: 182 TVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 24/226 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NVT R+ AL D+N I G V ++G +G GK++ L + L G+I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLE---KCHV 1334
+ G ++ + P +D R A+V Q+ L+ ++ DN + LK+ V + V
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDN-----IAFGLKLRKVPKDEIDERV 111
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E E + +E + S GQRQ + L RA+++ KV +DE +N+DA+ L+
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK----LRV 167
Query: 1395 AISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ +E K G T I + H + M D I +++ G + + G
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 7e-17
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 33/218 (15%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 664
+ LN +SL + +G V VIG G+GKS+LLN+I G++ T G I
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 665 -HASGSIAYVPQVPWILSG-----TIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVG 717
+ +A V Q P L+G TI +N+ ++ + S L +
Sbjct: 76 AKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 718 GDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LS 770
+ E ++ LSGGQR L+L A H I +LD+ +A+D + A ++ L+
Sbjct: 134 LGLGL--ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 771 NAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 807
I+ H L T ++ THN+ A+ + ++++ G++
Sbjct: 192 AKIVEEHKL--TTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (203), Expect = 8e-17
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 18/238 (7%)
Query: 1218 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+I+F+ V Y+P+ P AL DI+ ++ G+ ++G TG+GKS++L L L
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1275 GQILVDGLNIINT-------PVRDLRGRFAVVPQSPFLFEGSLRD-NLDPFHMNDDLKIW 1326
G++ V + + +T PVR G P+S E L+D P + I
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP----QNFGIP 116
Query: 1327 SVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ E++E VGL + F ++S S GQ + + +A L +VL LDE TA +D
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1386 AQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441
+ + S G TV+ + H + V + D + +L+ GH++ G P + Q+
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234
|
Length = 288 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 9e-17
Identities = 71/248 (28%), Positives = 125/248 (50%), Gaps = 17/248 (6%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ + +N+T R+ + + ++N TI+ GT V ++G +G GK+++L + L G
Sbjct: 4 KNFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 1276 QILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEK 1331
QI +DG ++ + + RD+ +V QS LF SL +N+ M L + K
Sbjct: 62 QIFIDGEDVTHRSIQQRDI----CMVFQSYALFPHMSLGENVGYGLKM---LGVPKEERK 114
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
VKE +E V L F S GQ+Q + LARAL+ KVL DE +N+DA
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 1392 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-S 1447
++ I + +T + + H S + D +++++ G +++ G+PQ L + S F +
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMA 234
Query: 1448 SFVRASTM 1455
SF+ + +
Sbjct: 235 SFMGDANI 242
|
Length = 351 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 22/224 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNI--INT 1287
L DIN I +G +G GKS+ L R+ P C G++ +DG+++ ++T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH--MNDDLKIWSVLEKCHVKEEVEAVG 1342
V LR + +V Q P F S+ DN+ H + K+ ++EK + +VG
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-----SLTSVG 134
Query: 1343 L----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
L +K+S S GQ+Q +C+ARA+ +L +DE + +D ++++N I
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
K T+I + H + + D + G +VE Q + ++
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238
|
Length = 251 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+E + +T R+ P + A D++ +++ G ++G GAGKS+++ LF L G+I
Sbjct: 4 ALEMRGITKRF-PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1278 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEG-SLRDNL-----DPFHMNDDLKIWSVLE 1330
VDG + I +P +R +V Q L ++ +N+ D +
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARA 119
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA- 1389
+ +KE E GL SVG++Q + + +AL + +++L LDE TA + Q A
Sbjct: 120 R--IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 1390 ---SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1435
IL+ + G T+I I H++ V+ + D + +L G +V +P
Sbjct: 178 ELFEILRRLAAE---GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP 224
|
Length = 501 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
LN VSL + +G + ++GE GSGKS+L + G + GSI G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 670 --IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ V Q P T+ + + P S++ + ++ VG
Sbjct: 82 RPVQMVFQDPYSSLNPRR----TVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
+++ + LSGGQR R+A+ARA+ + +LD+ SA+D V IL+ + L+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL----ELK 188
Query: 781 KTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 817
K R + +H++ + D + VMD GQ+ IG + +L
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 38/221 (17%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
++ +SL + KG V ++G G GK++LL I G + G I G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 669 SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDM 720
I V Q S T+ +N+ FG + +KA + L +VG
Sbjct: 78 PIGMVFQ-----SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA---LELVGLEGF 129
Query: 721 A--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
A + LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R + +
Sbjct: 130 ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL-REQMRKELKELQR 184
Query: 779 -LQKTRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 816
L T + TH+ Q A++ +D + VM+ G+++ +G+ ++
Sbjct: 185 ELGITFVYVTHD-QEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + ++ R+ A++D++ + G VG++G GAGK+++ N + G +
Sbjct: 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVP--QSPFLFEG-SLRDN-LDPFHMNDDLKIWSVL-EKC 1332
+ G +I P R + Q LF G ++ +N H L + +L
Sbjct: 62 IFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHAR--LGLSGLLGRPR 118
Query: 1333 HVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
KEE EA VGL + S GQ++ + +ARAL K+L LDE A
Sbjct: 119 ARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 1383 NVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
++ + L I + G+T++ I H + V+ + D I++L++G ++ +G P+ +
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238
Query: 1440 QDE 1442
+
Sbjct: 239 NNP 241
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (198), Expect = 2e-16
Identities = 56/220 (25%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1291
AL DIN IE ++G +G GKS+ L R+ G + ++G ++ N V
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNLD---PFHM------NDDLKIWSVLEKCHVKEEVEAVG 1342
LR +V Q P +F S+ +N+ H ++ + L+K + EEV+
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK- 135
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402
+K++ ++ S GQ+Q +C+ARAL K+L LDE T+ +D ++ +++ +
Sbjct: 136 ----LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 1403 MTVITIAHRISTVLNMDEILILDH-GHLVEQGNPQTLLQD 1441
+++I + H + + + H G L+E G + ++
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
|
Length = 246 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 67/245 (27%), Positives = 116/245 (47%), Gaps = 33/245 (13%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I F NV+ Y+ P A+HD+N E G IVG+TG+GKS++ +NAL + T
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT- 61
Query: 1273 CGGQILVDGLNIINTP----VRDLRGRFAVVPQSP--FLFEGSLRDNLD--PFHMNDDLK 1324
G + VD + I + +R +R R +V Q P LFE ++ + P + +L
Sbjct: 62 --GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 1325 IWSVLEKCHVKEEVEAVGLE-----TFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
VK + ++ + +S S GQ + I + L + ++ LDE
Sbjct: 120 --------EVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 1380 CTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1436
TA +D Q+ + + S + T+I ++H ++ V DE++++ G +V Q +P+
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 1437 TLLQD 1441
L +D
Sbjct: 232 ELFKD 236
|
Length = 286 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + V Y L++I+ ++ G + I G +G GKS++L + L G +
Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKE 1336
L +G ++ R + + Q+P LF ++ DNL P+ + + ++ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALD 115
Query: 1337 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ L ++ + ++ S G++Q I L R L K+L LDE T+ +D ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 1396 I 1396
I
Sbjct: 176 I 176
|
Length = 223 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 2e-16
Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 21/223 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINTPV 1289
AL I+ IE + V +G +G GKS+ L R+ + G+I +DG NI + V
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1290 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV------ 1341
+ +LR +V Q P F S+ +N+ L++ V + +++ VE
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFENV-----AYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 1342 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
++ +KES + S GQ+Q +C+ARA+ S VL +DE + +D + + ++ I
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
K T++ + H + + D+ G +VE + + + +
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235
|
Length = 250 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 65/249 (26%), Positives = 113/249 (45%), Gaps = 46/249 (18%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I +NV+ Y + L D++ I G I+G GAGKS++L+ + RL G+I
Sbjct: 1 MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL-------- 1329
+DGL + +TP ++L + +++ Q +N H+N L + ++
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQ----------EN----HINSRLTVRDLVGFGRFPYS 104
Query: 1330 -------EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
++ + E +E + LE S GQRQ +A L + + + LDE
Sbjct: 105 QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1383 NVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQG 1433
N+D Q IL+ + G T++ + H I N D I+ L +G +V+QG
Sbjct: 165 NLDMKHSVQIMKILRRLA--DELGKTIVVVLHDI----NFASCYSDHIVALKNGKVVKQG 218
Query: 1434 NPQTLLQDE 1442
+P ++Q E
Sbjct: 219 SPDEIIQPE 227
|
Length = 252 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-16
Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 20/229 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1276
+ +V Y LP + T+ G V I+G +GAGKS++LN A F TP G+
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPA-SGE 55
Query: 1277 ILVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1334
IL++G++ +P + R +++ Q LF ++ N+ ++ LK+ + ++ V
Sbjct: 56 ILINGVDHTASPPAE---RPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKV 110
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ 1393
+ VGL F+K S GQRQ + LAR L++ +L LDE + +D A A +L
Sbjct: 111 EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLA 170
Query: 1394 --NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439
+ + E + MT++ + H D ++ LD+G + QG+ Q LL
Sbjct: 171 LVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 62/232 (26%), Positives = 106/232 (45%), Gaps = 10/232 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ + + Y AL IN I+ G I+G GAGKS++ L + G+I
Sbjct: 5 ILKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1278 LVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
L DG ++ + LR +V Q P LF S+ ++ +N L V ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-- 121
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D S +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 1394 NAISSECKGM--TVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQDE 1442
+ K + T+I H I V L D + ++ G ++ QGNP+ + ++
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 56/225 (24%), Positives = 102/225 (45%), Gaps = 44/225 (19%)
Query: 1219 IEFQNVTMRYKPSLPAA----LHDINFTIEGGTQVGIVGRTGAGKSSILNAL--FRLTPI 1272
+ F+N+T+ K S + L +++ + G I+G +GAGKS++LNAL R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G++L++G R R VPQ DD+ +
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQ-------------------DDI----LHPTL 97
Query: 1333 HVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V+E + A L G+ S G+R+ + +A L+ + +L LDE T+ +D+ +A
Sbjct: 98 TVRETLMFAAKL------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 1392 LQNAISSECK-GMTVITIAHRIST-VLNM-DEILILDHGHLVEQG 1433
+ + + G T+I H+ S+ + + D++L+L G ++ G
Sbjct: 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-16
Identities = 68/237 (28%), Positives = 104/237 (43%), Gaps = 53/237 (22%)
Query: 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660
+++ D T +W + L S +P GS+ A++G GSGKS+L +++G + L
Sbjct: 6 GIVVNDVTVTW-----RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 661 HGSIHASGS----------IAYVPQ---VPWILSGTIRDNILFG-----------KNYDP 696
G I G +AYVPQ V W + D ++ G K D
Sbjct: 61 SGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDR 120
Query: 697 QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 756
Q + L VD MV IGE LSGGQ+ R+ LARA+ + +LD+
Sbjct: 121 QIVTAALAR----VD---MVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVILLDEP 169
Query: 757 LSAVDAQVARWILSNAIMGPHMLQ------KTRILCTHNVQAISAADMVVVMDKGQV 807
+ VD + I+S +L+ KT ++ THN+ +++ VM KG V
Sbjct: 170 FTGVDVKTEARIIS-------LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTV 219
|
Length = 272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-16
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +N++ R+ A+++I+ T+ + G++G GAGKS++L + + G+I+
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHV 1334
DG +DL +++ +SP L+E + R+NL D +I VL
Sbjct: 59 FDGHPWTR---KDLHKIGSLI-ESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNI--- 111
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
V L K+ FS+G +Q + +A ALL K+L LDE T +D L+
Sbjct: 112 ------VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 1395 AISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
I S +G+TVI +H +S V + D I I+ G L QG
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 4e-16
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------HASGS---- 669
L+ VS + KG + ++GE GSGKS+L +ILG + T GSI S
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79
Query: 670 ----IAYVPQVPWILSG-----TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q P +S TI + I + + S E K L + + VG
Sbjct: 80 RRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV--GVGLP 135
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ LSGGQR R+A+ARA+ + + D+ SA+D V IL +L
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL-------DLL 188
Query: 780 QK-------TRILCTHNVQAISA-ADMVVVMDKGQV 807
+K T + TH++ ++ AD V VM G++
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+L +S+ G++ ++G G+GKS+L+ I + T GSI G
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 669 -SIAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I V Q P + GT++DNI +G KN D + Y +VG +
Sbjct: 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS-------------IVGLNKE 123
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
Y NLSGG+ R+++AR + + ++ +LD+ SA+D I + + +
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 782 TRILCTHNV-QAISAADMVVVMDKGQV 807
T I THN+ QA D ++KG +
Sbjct: 184 TVIWITHNMEQAKRIGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 4e-16
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------LVDGLNIINTPVRD 1291
I+F + GI G +GAGKS++L + L GG I L D IN P +
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 1292 LRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1347
R + +V Q LF ++R+NL N + +I V E ++ +GL+ +
Sbjct: 75 -R-KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI-------SVDELLDLLGLDHLL 125
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTV 1405
S G++Q + LARAL ++L LDE + +D L + K + V
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 1406 ITIAHRISTVLNM-DEILILDHGHLVEQG 1433
I + H +S + D I++++ G L G
Sbjct: 186 IFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 5e-16
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG------------EMMLTHGSIHA-SG 668
L+ +SL + KG V ++G GSGKS+LL + G LT S+
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 669 SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ V Q P T+ + + FG E + V+ +L + G
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER----VEEALELVGLEGLRDRS 131
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQ+ R+A+A + DI +LD+ + +D R +L + KT I+
Sbjct: 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIV 190
Query: 787 THNVQAISA-ADMVVVMDKGQ 806
TH++ + AD V+V++ G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 5e-16
Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +NV+ R+ A L D++ I G V ++G +G+GK+++L + L G IL
Sbjct: 3 IEVRNVSKRF-GDFVA-LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE------- 1330
G + + PV++ F V Q LF ++ DN+ F L++ E
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFRHMTVFDNV-AF----GLRVKPRSERPPEAEI 113
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ V E ++ V L+ S GQRQ + LARAL KVL LDE +DA+
Sbjct: 114 RAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1391 ILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
L+ + + +T + + H L + D +++++ G + + G P
Sbjct: 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 5e-16
Identities = 95/474 (20%), Positives = 178/474 (37%), Gaps = 38/474 (8%)
Query: 969 KVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1028
K+ + + KI++ P+ ++ R+L +SD+ I + + ++ A + LG A
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIIL-TLGSAA 140
Query: 1029 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS----RELRRLDSVSRSPIYASFTETLNGS 1084
L+Y+ LL V + + F + R + + + L G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETED----KLQNDYQTILEGR 196
Query: 1085 S--TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142
T+ ++E + Y+ + L A S I + +I
Sbjct: 197 KELTLNRERAEYVHNNLYIPDAQEYRHHI---------IRANTFHLLAVNWSNIMLLGLI 247
Query: 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSL---LGNFLSSFTETEKEMVSLERVLEYMDVP 1199
G L + +A + ++ L L + + V+ ++ + P
Sbjct: 248 GLVFWLALSLGWAS-TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAP 306
Query: 1200 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259
+ PDW +E +NV Y+ + + IN TI+ G V ++G G+GK
Sbjct: 307 YKADFPRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGK 362
Query: 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1319
S++ L L G+IL+DG + + D R F+ V LF+ L +
Sbjct: 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKAS 420
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
++ W L++ + + S + S GQ++ + L ALL+ +L LDE
Sbjct: 421 PQLIEKW--LQRLELAHKTSLNDGRF----SNLKLSTGQKKRLALLLALLEERDILVLDE 474
Query: 1380 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVE 1431
A+ D + K G T+ I+H ++ D +L + +G L E
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 5e-16
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 33/241 (13%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1273
+E + ++ Y ALHDI+ E ++G +G GKS+ L L R L P
Sbjct: 7 MEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 1274 GGQILVDGLNIINT--PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G+IL+DG NI + V +LR R +V Q P F S+ +N+ L++ V +K
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVNGVKDK 119
Query: 1332 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
++ E VE L VK ES + S GQ+Q +C+ARAL +VL +DE +
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1384 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQT 1437
+D ++ I T+I + H R+S D G L+E G +
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVS-----DVTAFFYMGKLIEVGPTEQ 234
Query: 1438 L 1438
+
Sbjct: 235 I 235
|
Length = 253 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------SIAYVPQV 676
+ VS +G + ++GE G+GK++LL I ++ G + G ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 677 PWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+L G T R+N+ F + + +KA ++ L + Y+ +
Sbjct: 78 G-VLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLL---EYLDRRV 131
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
S G + ++A+ARA+ H I +LD+ S +D R + I + I +
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 788 HNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
H +Q + A D V+V+ KG+V GS L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNI--INT 1287
AL IN IE ++G +G GKS+ L L R L P G++L+DG +I +
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1347
V LR R +V Q P F S+ DN+ +K L++ V++ ++ L V
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-VEKSLKGAALWDEV 136
Query: 1348 KE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
K+ S + S GQ+Q +C+ARAL +VL +DE T+ +D + ++ I K
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196
Query: 1404 TVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLL 1439
T++ + H RIS D+ +G +VE G+ L
Sbjct: 197 TIVIVTHNMQQASRIS-----DKTAFFLNGEIVEFGDTVDLF 233
|
Length = 250 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 7e-16
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 39/218 (17%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1292
L + ++ G V IVG +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 1293 RGR--------FAVVP--------QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
R R F ++P P G + + K
Sbjct: 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD----------------SRAGAKA 129
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA---SILQ 1393
+EAVGL + S G++Q + LARA VL DE T N+D T + L
Sbjct: 130 LLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVE 1431
A++ E +G T++ + H D L L G LVE
Sbjct: 190 FALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 7e-16
Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 15/228 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1272
++E +++++ Y A++DI+ IE ++G +G GKS+ L ++ R+ +
Sbjct: 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1273 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+IL +GLNI+ N V +LR +V Q P F S+ +N+ + SVL+
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1331 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ V+E + L VK S +S S GQ+Q +C+AR L VL LDE + +D
Sbjct: 139 EI-VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ + ++ I+ + ++I + H + L + D +G LVE
Sbjct: 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 8e-16
Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 58/257 (22%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1274
++E +N+++R + L D++ T+ G V I+G GAGKS++L AL G
Sbjct: 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL------SGE 51
Query: 1275 -----GQILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLK 1324
G++ ++G + + +L R AV+PQ PF E + P
Sbjct: 52 LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP-------- 103
Query: 1325 IWSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALL------KSSKV 1374
+ V A V L S G++Q + LAR L +
Sbjct: 104 -HGLSRA-EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161
Query: 1375 LCLDECTANVDAQ----TASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILD 1425
L LDE T+ +D + + G+ VI + H LN+ D I++L
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHER--GLAVIVVLHD----LNLAARYADRIVLLH 215
Query: 1426 HGHLVEQGNPQTLLQDE 1442
G LV G P +L E
Sbjct: 216 QGRLVADGTPAEVLTPE 232
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 8e-16
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 64/270 (23%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL------------ 1266
IE +N+T ++ L +I+FTIE G +GI+GR+GAGKS +++ L
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1267 --FRLT------------------PICGGQ---ILVDGLNIINTPVRDLRGRFAVVPQSP 1303
+ + P+CGG VD N+ + R +R R A++ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1304 FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------------VKEEVEAVGLETFVKESG 1351
F G DD + +VLE + +E V L +
Sbjct: 119 FALYG------------DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA 1409
S G++Q + LAR L K + DE T +D QTA ++ NA+ K G++++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 1410 HRISTVLNM-DEILILDHGHLVEQGNPQTL 1438
H + ++ D+ + L++G + E+G P +
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 9e-16
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGS--- 669
E+ L V+L + G VA++G GSGKS+LLN +LG + T G + +G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLT 70
Query: 670 --------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 711
I +V Q +P T+ +N+ P +
Sbjct: 71 KLSEKELAKLRRKKIGFVFQNFNLLP---DLTVLENVEL-----PLLIAGKSAGRRKRAA 122
Query: 712 ISL--MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 769
L ++G + + +K LSGGQ+ R+A+ARA+ + I + D+ +D++ A+ +L
Sbjct: 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182
Query: 770 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
KT I+ TH+ + AD V+ + G++
Sbjct: 183 ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 9e-16
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 1251 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL 1310
++G +G GK+++L L G I++DG ++ N P LR +V QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRH-INMVFQSYALFP--- 55
Query: 1311 RDNLDPFHMNDD------LKIWSVLE---KCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361
HM + LK+ V K V E + V LE F S GQ+Q
Sbjct: 56 -------HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQR 108
Query: 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM- 1418
+ LARAL+ K+L LDE + +D + +Q + + E G+T + + H + M
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1419 DEILILDHGHLVEQGNPQTLLQDECSVFSS 1448
D I I+ G + + G P+ + ++ ++F +
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPANLFVA 198
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 1e-15
Identities = 63/233 (27%), Positives = 103/233 (44%), Gaps = 35/233 (15%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPV 1289
A+ I+F IE G + +VG +G+GKS ++ L P G IL DG +++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1290 RDLRG----RFAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEA 1340
R LRG + ++ Q P +L+P H + + L++ L + +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 1341 ----VGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1389
VG+ E + S GQRQ + +A AL +L DE T +D AQ
Sbjct: 138 LLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+L+ + +E GM ++ I H + V D + ++ HG +VE G +TL
Sbjct: 198 DLLKE-LQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
L +S + KG V +IG G+GKS+LL I G T G + +G +A L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP----LIELG 97
Query: 682 G------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735
T R+NI + E + ++ + + GD +I + S G
Sbjct: 98 AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAEL--GD--FIDQPVKTYSSGMY 153
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAI- 793
ARLA + A + DI +LD+VL+ DA + + + KT +L +H++ AI
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQE--KCLERLNELVEKNKTIVLVSHDLGAIK 211
Query: 794 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824
D + ++ GQ++ GS + + Y
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEE-VIPAYEED 241
|
Length = 249 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+LN +SL + G +A+ G G GKS+LL + + T G++ G
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 670 -IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
++Y Q P + T+ DN++F + D + + L L I
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP-----------DSI 126
Query: 724 GEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
K + LSGG++ R+AL R + I +LD++ SA+D R I ++ ++ ++
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI--EEMIHRYVREQN 184
Query: 783 R--ILCTHN-VQAISAADMVVVMDKG 805
+ TH+ QAI AD V+ + G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E N+ + Y S L ++ + G ++GR G GK+++L L L P+ G I +
Sbjct: 2 EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1280 DGLNIINTP----VRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
DG +I P R G A VPQ P L ++ +NL + L
Sbjct: 60 DGEDITKLPPHERAR--AG-IAYVPQGREIFPRL---TVEENLL-----------TGLAA 102
Query: 1332 C-----HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1381
+ +E+ + L+ + G S GQ+Q + +ARAL+ K+L LDE T
Sbjct: 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
Query: 1382 -ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
++ ++ + +E GM ++ + + + D +++ G +V G L
Sbjct: 163 QPSIIKDIGRVI-RRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220
Query: 1440 QDE 1442
+D+
Sbjct: 221 EDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668
E+ L VSL + KG VA++G GSGKS+LLN + G T G + G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70
Query: 669 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
I +V Q +L T +N+ P + K + L+
Sbjct: 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKKERRERAEELL 125
Query: 716 --VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
VG GD Y E LSGGQ+ R+A+ARA+ + I + D+ +D++ + ++
Sbjct: 126 ERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
Query: 771 -----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
N G T ++ TH+ + AD ++ + G++
Sbjct: 182 LLRELNKEAG-----TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 38/227 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
V+L+ V L +P+G ++A++G GSGKS+LL ILG + G I G
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
Query: 669 -----SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLM----VG 717
+ + Q + S T+ +N+ F + + E+L ++ LM VG
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR-----ELVLMKLELVG 133
Query: 718 --GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
G A Y E LSGG R R+ALARA+ ++ LD+ S +D A I
Sbjct: 134 LRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189
Query: 774 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 819
L T I+ TH++ ++ + AD V V+ G+V G+ +L S
Sbjct: 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ +SL + G LVA++G G+GKS+LL I G G I +G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 670 ---IAYVPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA- 721
+ +V Q + T+ DNI FG + P + L + L+ +A
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL---LRLVQLEGLAD 132
Query: 722 -YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA----RWILSNAIMGP 776
Y + LSGGQR R+ALARA+ + +LD+ A+DA+V RW+
Sbjct: 133 RYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH---- 184
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 815
L T + TH+ +A+ AD VVV+++G+++ +G +
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
+ T G IVG +G+GKS++LN A F TP G++L++G+++ P D
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETP-QSGRVLINGVDVTAAPPADR--- 70
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1350
P S E +L +L ++ LK+ + + ++ + VGL K
Sbjct: 71 ----PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-AIEVALARVGLAGLEKRL 125
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITI 1408
S G+RQ + LAR L++ VL LDE A +D + + + + MTV+ +
Sbjct: 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 1409 AHRISTVLNMDEILI-LDHGHLVEQG 1433
H+ + + ++ LD+G + QG
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 4e-15
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+L VSL +P+G +VA++G G+GK++LL +I+G + GSI G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 670 --IAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY--- 722
I YVP+ I T+ +N+L G L + Y
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---------------ERVYELF 119
Query: 723 ------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ LSGG++ LA+ARA+ + +LD+ S A + AI
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-PSEGLAPKIVEEIFEAIREL 178
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLA 817
T +L N A+ AD V+++G+V G++A+L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 7/226 (3%)
Query: 1218 LIEFQNVTMRYKPSLPA-ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
+IE +N+T +YK L+D++F ++ G + I+G G+GKS+ + + L GQ
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1334
I++DG + V D+R + +V Q+P F G+ ++ F + N + + E+ V
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--V 121
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
E +E VG++ F + S GQ+Q + +A A+ K++ LDE T+ +D + L
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 1395 AISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1438
I + MTVI+I H + V D +L++ +G + P+ L
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E +N+T + A+ D++ TI G ++G +G GKS++L L GQI
Sbjct: 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 1278 LVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
++DG+++ + P R + F QS LF + F + D K+ V
Sbjct: 77 MLDGVDLSHVPPYQRPINMMF----QSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVN 131
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E + V ++ F K S GQRQ + LAR+L K K+L LDE +D + +Q
Sbjct: 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 1396 ISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSS 1448
+ E G+T + + H + M I I++ G V+ G P+ + + + +S+
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 4e-15
Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 30/237 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1292
AL++++ + G G++G +GAGKS+++ + L G ++VDG ++ +L
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 1293 -RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCH--VKEEVEAVGLETFV 1347
R + ++ Q L ++ N+ P +++ K ++ V E + VGL
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-----DEIKRKVTELLALVGLGDKH 134
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMT 1404
+ S GQ+Q + +ARAL + KVL DE T+ +D A T SIL+ I+ G+T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLT 193
Query: 1405 VITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQTLLQDECSVFSSFVRAS 1453
++ I H + V + D + ++ +G L+EQG +P+T L + F+R++
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQK------FIRST 244
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 14/231 (6%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +N++ RY ++ ++ +++ G VG++G GAGK++ + L G+IL
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCH 1333
+DG +I P+ R R + +PQ +F ++ +N+ K EK
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EK-- 113
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
++E +E + K S S G+R+ + +ARAL + K L LDE A VD +Q
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 1394 NAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
I + +G+ V+ H + L++ D I+ G ++ +G P+ + +E
Sbjct: 174 KIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 5e-15
Identities = 64/240 (26%), Positives = 109/240 (45%), Gaps = 26/240 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ V+ Y A ++ ++FT+ G G++G GAGKS+I + +T G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1337
V G+ + R R R VVPQ DNLD F + ++L ++ + E
Sbjct: 100 VLGVP-VPARARLARARIGVVPQF---------DNLDLEFTVRENLLVFGRYFGMSTR-E 148
Query: 1338 VEAV--------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+EAV LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1390 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1445
++ + S +G T++ H + + D + +L+ G + +G P L+ + C V
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQV 268
|
Length = 340 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-15
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 41/222 (18%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI----------- 670
VLN +SL +P G +VA++G GSGK++LL I G L H SG I
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG---LEH---QTSGHIRFHGTDVSRLH 70
Query: 671 AYVPQVPWILSG-------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDMAY 722
A +V ++ T+ DNI FG P+ A V L MV +A+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV--QLAH 128
Query: 723 IGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMG 775
+ ++ LSGGQ+ R+ALARA+ I +LD+ A+DAQV RW+ L
Sbjct: 129 LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--- 185
Query: 776 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L+ T + TH+ + A+ AD VVVM +G ++ G+ +
Sbjct: 186 ---LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 57/219 (26%), Positives = 100/219 (45%), Gaps = 13/219 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NVT R+ AL DI+F++E G G++G GAGK++ + + + G++L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1279 VDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
DG P+ R R +P+ L+ + D L LK + + E
Sbjct: 59 FDG-----KPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR--IDE 111
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+E + L + + S G +Q + A++ ++L LDE + +D +L++ I
Sbjct: 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171
Query: 1397 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
G TVI H++ V + D +L+L+ G V G
Sbjct: 172 RELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 65/220 (29%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
LH ++ T G G++G G+GKS++L L R P G+IL+D + + + +
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86
Query: 1296 FAVVPQSPFLFEG-SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1350
A +PQ EG ++R+ + P+H L + ++ V+E + VGL+
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWH--GALGRFGAADREKVEEAISLVGLKPLAHRL 144
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMTVIT 1407
S S G+RQ +A + + S+ L LDE T+ +D A +L + +S E +G+TVI
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIA 203
Query: 1408 IAHRISTVLNM-----DEILILDHGHLVEQGNPQTLLQDE 1442
+ H I NM D ++ L G ++ QG P L++ E
Sbjct: 204 VLHDI----NMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
++ V+L + +G + +IG GSGK++ L I + T G I G
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 669 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I YV Q P + T+ +NI +D + + + +VG D +
Sbjct: 76 KIGYVIQQIGLFPHL---TVAENIATVPKLLGWDKERIKKRADE------LLDLVGLDPS 126
Query: 722 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-ML 779
++ + LSGGQ+ R+ +ARA+ I ++D+ A+D + R L I L
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQKEL 185
Query: 780 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
KT + TH++ A+ AD + VMD G++ + ++
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
|
Length = 309 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP----Q 675
V L+ VSL + +G ++G G GK++LL I G T G I G I +P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 676 VPWILSG-------TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
V + T+ +NI FG K E + LD +V + Y
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALD-----LVQLE-GYANR 126
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
K LSGGQ+ R+A+ARA+ + + +LD+ L A+D ++ + + L T +
Sbjct: 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186
Query: 786 CTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
TH+ + A++ +D + VM+KG+++ IG+ ++
Sbjct: 187 VTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 9e-15
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 11/226 (4%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1292
++D + I G I+G +G+GKS+ + L RL GQI +DG NI+ +L
Sbjct: 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 1293 --RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAVGLETFVKE 1349
R + +V Q LF L + +L W E K E ++ VGLE +
Sbjct: 68 VRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
S G +Q + LARAL +L +DE + +D +Q+ + T++
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1408 IAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFVR 1451
I H + + + D I+I+ G +V+ G P +L++ + + F+
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 9e-15
Identities = 62/278 (22%), Positives = 108/278 (38%), Gaps = 78/278 (28%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1276
+I +N+++ Y L +++ T+ G ++G+VGR GAGKS++L L L P G
Sbjct: 3 MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH-- 1333
GL R + Q P L ++ D + + ++ +L +
Sbjct: 61 TRPKGL------------RVGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEA 104
Query: 1334 ------------------------------VKEEVEAVGLETFVKESGISFSVGQRQLIC 1363
+E + +G + S S G R+ +
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVA 163
Query: 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH------RISTVLN 1417
LARALL+ +L LDE T ++D ++ L++ + TVI ++H ++T
Sbjct: 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG--TVIVVSHDRYFLDNVAT--- 218
Query: 1418 MDEILILDHGHLVE-QGNPQTLLQDECSVFSSFVRAST 1454
IL LD G L +GN +SS++
Sbjct: 219 --HILELDRGKLTPYKGN-----------YSSYLEQKA 243
|
Length = 530 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 664
+N L VS + +G VA++G GSGKS++ + G + G I
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78
Query: 665 -HASGSIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGG 718
I + Q P + T+ D+I FG K P+ + + V +
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME----- 133
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
Y+ ++ NLSGGQ+ R+A+A + +I + D+ S +D + R I IM
Sbjct: 134 --DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK--IM--VD 187
Query: 779 LQKTR----ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
L+KTR I TH++ AD V+V +G++ G ++
Sbjct: 188 LRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 69/235 (29%), Positives = 106/235 (45%), Gaps = 31/235 (13%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I NV R+ + A L DI+ I+ G V ++G +GAGKS++L + L G+I
Sbjct: 3 IRINNVKKRF-GAFGA-LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1279 VDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKI-WSV 1328
++G ++ N VRD R + V Q LF HM D+ LK+
Sbjct: 61 LNGRVLFDVSNLAVRD-R-KVGFVFQHYALF----------PHMTVADNIAFGLKVRKER 108
Query: 1329 LE----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ V+E + V LE S GQRQ + LARAL KVL LDE +
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1385 DAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
DA+ L+ + + G+T + + H L + D +++L+ G + + G P
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPD 223
|
Length = 345 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 61/243 (25%), Positives = 110/243 (45%), Gaps = 29/243 (11%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1276
+I +N++ L ++ + G + I+G GAGKS++L AL L+P G+
Sbjct: 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGE 57
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
+ ++G+ + + P +L AV+PQ+ PF + ++ P + ++
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE----PEEDE 113
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------SSKVLCLDECTANVD 1385
+ + A L + S G++Q + LAR L + S + L LDE T+ +D
Sbjct: 114 RIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 1386 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLL 1439
A L+ A +G V+ + H LN+ D I++L G ++ G+PQ +L
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHD----LNLAAQYADRIVLLHQGRVIASGSPQDVL 229
Query: 1440 QDE 1442
DE
Sbjct: 230 TDE 232
|
Length = 259 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 61/222 (27%), Positives = 107/222 (48%), Gaps = 28/222 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
++D + +E G I+G +G+GKS+++ L RL G+ILVDG +I +LR
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 1295 ----RFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV-LEKCHVK--EEVEAV 1341
+ ++V QS L P H ++ L++ V + + E +E V
Sbjct: 103 LRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPKAEREERALEALELV 152
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISS 1398
GLE + + S G +Q + LARAL +L +DE + +D + +Q+ + +
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+ K T++ I H + L + D I I+ G +V+ G P+ +L
Sbjct: 213 KLK-KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 1e-14
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 23/215 (10%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTPVR 1290
L +N I T ++G +G+GKS++L RL G++ +DG +I V
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 1291 DLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1348
+LR R +V Q P S+ +N+ +N +K L++ V+ +E L VK
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDEVK 137
Query: 1349 ES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
+ S GQ+Q +C+ARAL +VL DE TAN+D + + +++ K MT
Sbjct: 138 DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMT 197
Query: 1405 VITIAH------RISTVLNMDEILILDHGHLVEQG 1433
++ + H RIS D + L G +VE G
Sbjct: 198 IVLVTHFPQQAARIS-----DYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 672
L +SL +PKG + A+IG G GKS+LL +L + G +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 673 ------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
V Q P G+I DN+ +G E L V+ +L
Sbjct: 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE---RVEEAL----RK 126
Query: 721 AYIGE------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
A + + + LSGGQ+ RL LARA+ + ++ +LD+ SA+D ++ + I
Sbjct: 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIA 185
Query: 775 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 807
+ T ++ THN+ QA AD + G++
Sbjct: 186 ELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 2e-14
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 21/222 (9%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL------NIINT 1287
A L DI I + GI+G +G+GKS++L L RL I +I VDG +I
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 1288 PVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1342
LR +V Q P F S+ DN L + + +I ++E+C + VG
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC-----LRKVG 138
Query: 1343 LETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
L V + S GQ+Q + +ARAL KVL +DE T+ +D + ++ I+
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+ ++ ++H V + D + L +G LVE G+ +
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
|
Length = 257 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGGQILVDG--LNI 1284
P P L +NF E G + ++G GAGKS++ LN L R G +L+DG L+
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDY 58
Query: 1285 INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1342
+ + R R +V Q P LF + ++ +N L V + V+E + AVG
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR--VREALTAVG 116
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISS 1398
+ S G+++ + +A A+ VL LDE TA +D Q +IL+ +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1399 ECKGMTVITIAHRI 1412
GMTV+ H +
Sbjct: 177 ---GMTVVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-14
Identities = 68/249 (27%), Positives = 100/249 (40%), Gaps = 26/249 (10%)
Query: 1209 LSPDWPF----QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1264
LS ++P GL N K A+ DI+F I G VG +G GAGKS+ L
Sbjct: 9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68
Query: 1265 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF---EGSLRDN--LDPFHM 1319
L L G++ V+G + P R R + + D LD +
Sbjct: 69 MLTGLLLPTSGKVRVNGKD----PFRR---REEYLRSIGLVMGQKLQLWWDLPALDSLEV 121
Query: 1320 NDDLKIWSVLEKCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375
I+ + + E E + LE F+K S+GQR LA ALL KVL
Sbjct: 122 LK--LIYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 1376 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1432
LDE T +D + ++ + + TV+ H + + D +L++D G LV
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFD 238
Query: 1433 GNPQTLLQD 1441
G L +
Sbjct: 239 GTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 2e-14
Identities = 103/516 (19%), Positives = 182/516 (35%), Gaps = 40/516 (7%)
Query: 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
F LC+ + + A+ + + L KI+ AP+ D+ ++
Sbjct: 57 FSFGGLCLLALLFR---IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLI 113
Query: 996 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1055
+ D+ I+ L I +A + IA L+Y+ V + + I + Q
Sbjct: 114 PLLTHDIDQINAFLFIFPPIAIALAIFFFCIAY-LAYLSVPMFAITISAIIIGTAAQLLA 172
Query: 1056 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIR--AFKSEDYFMAKFKEHVVLYQRTSYS 1113
+ G+ ++ + + +E
Sbjct: 173 FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232
Query: 1114 ELTASLWLSLRL---QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1170
E+ L QLL +I A + + + A S V L P+
Sbjct: 233 EI---LIFIAAENFGQLLFFLLIGCALFAAAMFASID-AAAIS--AFVLALLYIKGPLEM 286
Query: 1171 LLGNFLSSFTETEKEMVSLERVLEY---MDVPQEELC-----GYQSLSPDWPFQGLIEFQ 1222
L+ S+ + ++ +R+ ++ + P+ EL L+ D IE +
Sbjct: 287 LV----SALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV-DSIELK 341
Query: 1223 NVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
+V M K S AL I+ I G V IVG G GKS++ L G+IL+
Sbjct: 342 DVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW-SVLEKCHVKEEV 1338
DG + D R F+ + LF+ + + D+ + + LE K ++
Sbjct: 402 DGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKI 460
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
E G T + S GQ++ + L A L+ +L DE A+ D +
Sbjct: 461 EDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1399 ECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432
+ K G T+I I+H D+I+ L G +V+
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 9/211 (4%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RDLRGR 1295
D++ T+ G VG++G GAGK++ + + P G I++D +I P+ R RG
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG- 79
Query: 1296 FAVVPQSPFLFEG-SLRDNLDP-FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
+PQ +F S+ DNL + DDL + + E +E +E G S
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLS--AEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRI 1412
S G+R+ + +ARAL + K + LDE A VD + ++ I G+ V+ H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 1413 STVLNMDE-ILILDHGHLVEQGNPQTLLQDE 1442
L + E I+ GHL+ G P +LQDE
Sbjct: 198 RETLAVCERAYIVSQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 2e-14
Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 21/215 (9%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNII--NTP 1288
L ++N I + ++G +G GKS+ + L R+ + G I +DG++I
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1344
V +LR + +V Q P F S+ DN L +D+ I V+E ++A L
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER-----VEESLKAAALW 133
Query: 1345 TFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
VK+ S + S GQ+Q +C+AR + S +V+ +DE + +D + + +++ I
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193
Query: 1401 KGMTVITIAHRISTVLNMDEIL-ILDHGHLVEQGN 1434
+ T++ + H + + + +G ++E G
Sbjct: 194 EDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGL 228
|
Length = 250 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 3e-14
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+LN +S +P G VA++GE G+GKS++L + + GSI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 669 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYI 723
+I VPQ + + TI NI +G+ + E A D SL G D +
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTG-V 393
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQK 781
GE+G+ LSGG++ R+A+AR + I +LD+ SA+D + I + +
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR---- 449
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
T ++ H + I AD ++V+D G++ G+ +L A LY+ W
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496
|
Length = 497 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1282
N++ YK L D++ + G + + G+ GAGK+++ L L G IL++G
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 1283 NIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
I ++ R V Q LF S+R+ L D E+ E
Sbjct: 63 PI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG----------NEQAET 109
Query: 1341 V----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
V L + +S S GQ+Q + +A ALL +L DE T+ +D + + I
Sbjct: 110 VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 1397 SSECK-GMTVITIAH 1410
G VI I H
Sbjct: 170 RELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 3e-14
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--------------LGEMMLTHGSIH 665
N VL+ +SL + G L+A+IG+ G GK++LL +I + + LTH H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 666 ASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
G + DN+ FG ++ + + + + GD A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL--GDAAA--H 133
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
LSGG + R+A+ARA+ D+ +LD+ LSA+DA + + L + IL
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 786 C-THN-VQAISAADMVVVMDKGQVKWIGSSADL 816
C TH+ A++ AD +M G++ G L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 64/243 (26%), Positives = 115/243 (47%), Gaps = 25/243 (10%)
Query: 1218 LIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
L+E +N+ T RY+ L A+ ++FT+ G + I+G G+GKS++ L +
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 1271 PICGGQILVDG--LNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLK 1324
G+IL++ L+ + R R R + P L G + D P +N DL+
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLE 121
Query: 1325 IWSVLEKCHVKEEVEAVGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
++ + E + VGL + GQ+Q + LARAL+ K++ DE
Sbjct: 122 PEQRRKQ--IFETLRMVGLLPDHANYYPH--MLAPGQKQRVALARALILRPKIIIADEAL 177
Query: 1382 ANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1438
A++D S L N + E +G++ I + I + ++ D++L++ G +VE+G+ +
Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
Query: 1439 LQD 1441
L
Sbjct: 238 LAS 240
|
Length = 267 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 3e-14
Identities = 60/236 (25%), Positives = 114/236 (48%), Gaps = 15/236 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG 1274
++ +N+ + Y AL+DI +I ++G +G GKS++L R L P C
Sbjct: 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1275 --GQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNL--DP-FH-MNDDLKIW 1326
G IL +G NI+++ V LR + +V Q P F S+ +N+ P H + +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+++EK +K ++ + +S +S S GQ+Q +C+AR L + +V+ +DE + +D
Sbjct: 124 TIVEKS-LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH-GHLVEQGNPQTLLQD 1441
+ +++ I K TVI + H + + + + G L+E + ++
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 3e-14
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 681
L + G +VA++G G+GKS+LLN I G + GSI +G Y V +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 682 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 730
T+R NI G + LK VD + VG Y+ L
Sbjct: 78 ENNLFAHLTVRQNIGLGLH-------PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQL 129
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790
SGGQR R+ALAR + + I +LD+ SA+D + +L+ Q+T ++ TH++
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 791 Q-AISAADMVVVMDKGQVKWIG 811
A + A + V+ +G++K +
Sbjct: 190 SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 4e-14
Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILV 1279
F N ++ P L +I+F +E G + + G TG+GKSS+L + L P G+I
Sbjct: 431 FSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKI-- 483
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
GR + PQ+ ++ G+++DN+ D+ + SV++ C ++E++
Sbjct: 484 -----------KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532
Query: 1340 AVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAI 1396
+ T + E GI+ S GQR I LARA+ K + + LD ++D T I ++ +
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
Query: 1397 SSECKGM---TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448
CK M T I + ++ + D+IL+L G G LQ + FSS
Sbjct: 593 ---CKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSE-LQAKRPDFSS 643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 4e-14
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI-----LVDGLNIINTP 1288
A L +IN I G IVG+ G GKSS+L A+ G++ + T
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GL 1343
R+ R A Q P+L ++ +N+ PF+ + +V + C ++ +++ + G
Sbjct: 75 SRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ---RYKAVTDACSLQPDIDLLPFGD 130
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISS--EC 1400
+T + E GI+ S GQRQ IC+ARAL +++ ++ LD+ + +D + ++Q I +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1401 KGMTVITIAHRISTVLNMDEILILDHG 1427
T++ + H++ + + D I+ + G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L VSL + +G +VA++G G+GK++LL +I+G + G I G
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 669 -SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDM----- 720
IAYVP+ I T+ +N+L G + E D++ ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE------RDLEEVY----ELFPRLK 127
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAIMGP 776
++ LSGG++ LA+ARA+ + +LD+ L+ + ++ I
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-------- 179
Query: 777 HMLQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLA 817
L+K T +L N + A+ AD V++ G++ G++A+L
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 21/228 (9%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RD 1291
AL DI+ +++ G V ++G +G GK+++L + L G I G +I P RD
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 1292 LRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
+ +V QS LF ++ DN L M V E+ V E ++ VGL
Sbjct: 78 ----YGIVFQSYALFPNLTVADNIAYGLKNRGMGRA----EVAER--VAELLDLVGLPGS 127
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1404
++ S GQ+Q + LARAL S +L LDE + +DA+ L+ I + G+T
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 1405 VITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1450
I + H L+M D I++++HG + + G PQ + + + F + FV
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFV 235
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 4e-14
Identities = 63/244 (25%), Positives = 112/244 (45%), Gaps = 22/244 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICG-- 1274
+IE +N + Y A+ ++ I I+G +G GK+++L ++ R+ I G
Sbjct: 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1275 --GQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+I G +I + V + R + +V Q P F S+ DN+ +K L+
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1331 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ V+E ++ L VK + G S GQ+Q +C+ARAL +V+ LDE T+ +D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG-------NPQTL 1438
++ + + T++ + H I + + D I + G L+E G P+
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNK 239
Query: 1439 LQDE 1442
L +E
Sbjct: 240 LTEE 243
|
Length = 250 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 27/229 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L+D++ ++ G ++G G GKS++L RL G + + I R L R
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 1296 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVKESG 1351
A++PQ EG ++R+ L + + L +W L + V + +E +
Sbjct: 78 LALLPQHHLTPEGITVRE-LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL 136
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ--NAISSECKGMTV 1405
S GQRQ LA L + + V+ LDE T +D + +++ N +G TV
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-----QGKTV 191
Query: 1406 ITIAHRISTVLNM-----DEILILDHGHLVEQGNPQTLLQDE--CSVFS 1447
+T+ H LN D +++L +GH++ QG P+ ++ +VF
Sbjct: 192 VTVLHD----LNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVFD 236
|
Length = 255 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 48/221 (21%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
E + L VS +P+G + +IG G+GKS+LL + G G++ G ++ +
Sbjct: 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL 88
Query: 674 --------PQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGG 718
P+ L+G R+NI + + E ++ L G
Sbjct: 89 LGLGGGFNPE----LTG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSEL---------G 133
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSN 771
D +I S G +ARLA A A DI ++D+VL+ DA + R +L
Sbjct: 134 D--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 772 AIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIG 811
KT IL +H+ +I D +V++KG++++ G
Sbjct: 192 G--------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-14
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWI 679
G VA++G G+GKS+L+N + G I G +IA V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 680 LSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734
+ +I DNI G+ P + E + +A D I G +GE+G LSGG+
Sbjct: 421 FNRSIEDNIRVGR---PDATDEEMRAAAERAQAHDF-IERKPDGYDTVVGERGRQLSGGE 476
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
R RLA+ARA+ I +LD+ SA+D + + A + M +T + H + +
Sbjct: 477 RQRLAIARALLKDPPILILDEATSALDVETEAKV--KAALDELMKGRTTFIIAHRLSTVR 534
Query: 795 AADMVVVMDKGQVKWIGSSADLA 817
AD ++V D G+V GS +L
Sbjct: 535 NADRILVFDNGRVVESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 5e-14
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA-SGSIAYVPQ-- 675
+ VLNQ+ L +P G VAV+G G GKS+LL + G + G + A + +A +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT 83
Query: 676 ---------VPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+PW + DN+ G + + + L A L D A
Sbjct: 84 RLMFQDARLLPW---KKVIDNVGLGLKGQWRDAAL-QALAAVGL---------ADRA--N 128
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 781
E LSGGQ+ R+ALARA+ H + +LD+ L A+DA + R + + I + Q+
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-LTRIEMQDLIES--LWQQHGF 185
Query: 782 TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSL 820
T +L TH+V +A++ AD V+++++G++ DL V L
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI-----GLDLTVDL 220
|
Length = 257 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 6e-14
Identities = 65/234 (27%), Positives = 105/234 (44%), Gaps = 27/234 (11%)
Query: 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280
F N+ + P L +IN IE G + I G TG+GK+S+L + G+I
Sbjct: 42 FSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--- 94
Query: 1281 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 95 ----------KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144
Query: 1341 VGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1397
+ T + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV- 203
Query: 1398 SECKGM---TVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448
CK M T I + ++ + D+ILIL G G LQ FSS
Sbjct: 204 --CKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE-LQSLRPDFSS 254
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 6e-14
Identities = 68/239 (28%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+F+NV RY L + ++F ++ G G++G GAGK++ L L LT G I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSV---LEKCHV 1334
+ G + + R R R VVPQ DNLDP F + ++L ++ L
Sbjct: 66 LCG-EPVPSRARHARQRVGVVPQF---------DNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 1335 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ V E LE S G ++ + LARAL+ VL LDE T +D Q
Sbjct: 116 RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1445
++ + S +G T++ H + + D + +++ G + +G P L++ E C V
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDV 234
|
Length = 306 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
L VSL + G VA+IG G+GKS+LL + G + T GS+ G+
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 670 ----IAYVPQ-VPWILSGTIRDNILFGK------------NYDPQSYSETLKACTL--DV 710
I + Q I ++ +N+L G+ + + E +A V
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRALAALERV 132
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
+ D AY + LSGGQ+ R+A+ARA+ + + D+ ++++D S
Sbjct: 133 GLL-----DKAYQ--RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP-----ASS 180
Query: 771 NAIMG-----PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+M T I+ H V A AD +V + G++ + G A+L
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 8e-14
Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 60/243 (24%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 669
+ + + VS + G ++ ++GE GSGKS+L +++G +L G SG
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG--LLPEGGRITSGEVILDGR 75
Query: 670 -----------------IAYVPQVPWIL---SGTIRDNI-----LFGKNYDPQSYSETLK 704
IA + Q P TI D I L GK ++ ++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 705 ACTLDVDISLMVGGDMAYIGEKGVN------LSGGQRARLALARAVYHGSDIYMLDDVLS 758
L+ VG + + LSGG R R+ +A A+ + + D+ +
Sbjct: 136 L--LE-----QVG-----LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 759 AVDAQVARWILSNAIMGPHMLQKTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 813
A+D IL + + LQ+ + TH++ ++ AD VVVM KG++ G +
Sbjct: 184 ALDVTTQAQIL-DLLKD---LQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 814 ADL 816
++
Sbjct: 240 EEI 242
|
Length = 539 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 9e-14
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
E N VL +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVG---G 718
+ +PQ +I SGT R KN DP + E + +V + ++ G
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFR------KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPG 126
Query: 719 DMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDV---LSAVDAQVARWILSNAIM 774
+ ++ G LS G + + LAR+V + I +LD+ L + QV R L A
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA 186
Query: 775 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
T IL H ++A+ +V+++ +V+
Sbjct: 187 DC-----TVILSEHRIEAMLECQRFLVIEENKVR 215
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 38/222 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
Q+ +L VSL +PKG + V+G G GK++LL +++G + + GSI G
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71
Query: 670 -----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 719
IAYVPQ I T+ +N+L G L + + + V +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTG--------LAALPRRSRKIPDEIYELFPVLKE 123
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
M +G +G +LSGGQ+ +LA+ARA+ + +LD+ + + + I I L
Sbjct: 124 M--LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIR---RL 177
Query: 780 QKTR----ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ +L + A AD VM++G+V G+ +L
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 9e-14
Identities = 62/240 (25%), Positives = 111/240 (46%), Gaps = 30/240 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ + Y AL DI G + ++G +GAGKSS+L L L G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1279 VDG--LNIINTP----VRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE- 1330
+ G + TP +RDLR +V Q L+ ++++NL + ++ + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL----IEAPCRVLGLSKD 116
Query: 1331 --KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--- 1385
++ ++ + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1386 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG------NPQT 1437
AQ SI++ + G+T + + H + ++ +++GH+VEQG PQT
Sbjct: 177 TAQIVSIIKELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQT 233
|
Length = 242 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 37/228 (16%)
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288
L AL ++FT+E G + +VG +G GKS++ L + GG++ G +++
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83
Query: 1289 ---VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHMNDDLKIWSVLEKCHVKEEV 1338
+ LR + +V Q+P+ GSL L +P +N L S E+ +E+
Sbjct: 84 PEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTSL---SAAER---REKA 134
Query: 1339 EA----VGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1389
A VGL FS GQRQ I +ARAL+ V+ DE + +D AQ
Sbjct: 135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194
Query: 1390 SI---LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
++ LQ + G++ + I+H +S V ++ DE++++ G VE+G
Sbjct: 195 NLMMDLQQEL-----GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237
|
Length = 327 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTPV 1289
ALH I+ E ++G +G GKS+ L L R+ G+I +G NI + +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1290 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE------AV 1341
+LR +V Q P F S+ DN+ LKI V +K + + VE A+
Sbjct: 79 DLVELRKEVGMVFQQPTPFPFSVYDNV-----AYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 1342 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
ET + + +FS GQ+Q IC+ARAL KV+ LDE T+ +D ++S ++ +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
T I + H + + D+ L +G L+E G
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIINTP- 1288
A+ I+ E ++G +G+GKS+ L +L R+ I GQIL G++I N
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI-NRKE 93
Query: 1289 --VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
V ++R +V Q P F S+ +N+ +K VL++ V+ ++ L
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQ 152
Query: 1347 VKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402
VK+ S ++ S GQ+Q +C+ARA+ +L +DE + +D + L+ + K
Sbjct: 153 VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
Query: 1403 MTVITIAH------RISTVLNMDEILILDHGHLVE 1431
T+I + H R S D G L+E
Sbjct: 213 YTIIIVTHNMQQAARAS-----DYTAFFYLGDLIE 242
|
Length = 267 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVR 1290
+ D+N +++ G + +VG +G+GKS A+ L P G+IL+DG + P+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1291 DLRGR-FAVVPQSPFLFEGSLRDNLDPF-----HMNDDLKIWSVLEK---CHVKEEVEAV 1341
+RGR A + Q+P R +P H + L+ L K + E +EAV
Sbjct: 59 -IRGRHIATIMQNP-------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110
Query: 1342 GL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1397
GL E +K+ S G Q + +A ALL L DE T ++D A +L+
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1398 -SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
+ G ++ I H + V + DE+ ++D G +VE+G + +
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 66/262 (25%), Positives = 116/262 (44%), Gaps = 46/262 (17%)
Query: 1219 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I+ +N+ + LP AL +++ I G + I+G+TG+GK++ LNAL L P
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPD 60
Query: 1273 CG-----------------GQILVDGLNIINTPVR------DLRGRFAVVPQSPF----L 1305
G + +++ L I T + ++R R VV Q F L
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ--FAEYQL 118
Query: 1306 FEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLI 1362
FE ++ ++ P M + ++ + +E VGL E++++ S S GQ++ +
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKE--EAKKR--AAKYIELVGLDESYLQRSPFELSGGQKRRV 174
Query: 1363 CLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDE- 1420
LA L L DE TA +D Q IL+ + +G T+I + H + VL +
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKR 234
Query: 1421 ILILDHGHLVEQGNPQTLLQDE 1442
+ G +++ G+ +L D
Sbjct: 235 TIFFKDGKIIKDGDTYDILSDN 256
|
Length = 305 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
+ L V+L + +G +VA+IG G+GKS+LL S+ G + T G I +G
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 670 -------IAYVPQVP-WILSGTIRDNILFGK-NYDP--QS----YSETLKACTLD----V 710
I + Q + ++ +N+L G+ Y +S +S+ KA LD V
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
I D AY + LSGGQ+ R+A+ARA+ I + D+ ++++D + A+ ++
Sbjct: 136 GIL-----DKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 771 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T I+ H V A AD ++ + G++ + G +++L
Sbjct: 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ +L+ +SL L G ++A+ G+ G+GK++L + G + + GSI +G
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER 69
Query: 669 --SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
SI YV Q + + ++R+ +L G L D+
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL--KELDAGNEQAETVLK---------DLDLYA 118
Query: 725 EKGVN---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPH 777
K + LSGGQ+ RLA+A A+ G D+ + D+ S +D +V I A G
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-- 176
Query: 778 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 808
K I+ TH+ + ++ D V+++ G +
Sbjct: 177 ---KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-13
Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 16/221 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1276
+ V Y+ LP + + G V I+G +GAGKS++LN A F + P G
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPA-SGS 54
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
I V+ + + +++ Q LF ++R N+ ++ LK+ + ++ V
Sbjct: 55 IKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVV 110
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + VG+ ++ S GQRQ + LAR L++ + +L LDE + +D +
Sbjct: 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1396 ISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ C + T++ + H +S + +I ++ G +
Sbjct: 171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 57/231 (24%), Positives = 110/231 (47%), Gaps = 13/231 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +++ RYK AL ++ +I G++ ++G GAGKS++L L + G++
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
V G + + +R + +V Q P +F ++ D++ +N L V + V+E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEE 121
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASIL 1392
++AV + F + S GQ++ + +A L V+ LDE A +D IL
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 1393 QNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442
+ + ++ G TVI H + D++++L G ++ +G+ L ++
Sbjct: 182 -DRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
|
Length = 274 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 47/218 (21%), Positives = 86/218 (39%), Gaps = 46/218 (21%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1289
L +N TI+ G ++G G+GKS++ + + +T G+IL G +I + P
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72
Query: 1290 -RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1348
R G F + Q P E+ V F++
Sbjct: 73 ERARLGIF-LAFQYP--------------------------------PEIPGVKNADFLR 99
Query: 1349 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS---SECKGMTV 1405
FS G+++ + + LL + LDE + +D ++ I+ E K + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1406 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1443
IT R+ + D + +L G +V+ G+ + L+ E
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 35/242 (14%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1273
+E +N+ + Y AL DI+ I +G +G GKS++L R L C
Sbjct: 26 LEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 1274 GGQILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+I +DG NI D LR R +V Q P F S+ +N+ L++ +
Sbjct: 84 EGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNPFPKSIYENV-----VYGLRLQGINN 137
Query: 1331 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+ + E VE L VK E+ S GQ+Q + +ARA+ +VL LDE T+
Sbjct: 138 RRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQ 1436
+D + ++ I+ T++ + H R+S D + G LVE G+
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDTD 252
Query: 1437 TL 1438
TL
Sbjct: 253 TL 254
|
Length = 272 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1274
+E +N+ + Y AL+DIN I ++G +G GKS+ L L R+ +
Sbjct: 5 MESKNLNLWY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 1275 -GQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI--- 1325
G++L+DG NI + V +LR R +V Q P F S+ DN+ H D K
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 1326 ---WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
W+ L+K + +EV+ +K+S + S GQ+Q +C+AR + V+ +DE T+
Sbjct: 123 IVEWA-LKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRI 1412
+D + +++ + K T++ + H +
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 2e-13
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 21/219 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1292
+ +I+FT+ G +G+VG +G+GKS+ AL RL G+I DG + N R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 1293 -RGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKI-WSVLEKCHVKEEV----EAVGLET 1345
R R VV Q P SL L+ + + L++ L +++V E VGL+
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 1346 FVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSEC 1400
+ + FS GQRQ I +ARAL+ ++ LDE T+++D AQ ++L++ +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL--QQK 474
Query: 1401 KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1438
+ + I+H + V + ++++L G +VEQG+ + +
Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513
|
Length = 529 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
L VSL +PKG + +IG G+GKS+L+ I G T GS+ G
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 669 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 716
I + Q +LS T+ +N+ K + E L+ +V
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE----------LV 128
Query: 717 G----GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 770
G D AY LSGGQ+ R+ +ARA+ + + + D+ SA+D + + IL+
Sbjct: 129 GLEDKAD-AYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 771 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
N +G T +L TH ++ + D V VM+KG+V G+ ++
Sbjct: 184 RDINRELGL-----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 675
L VSL + G LV V+G G GK++LLN I G + + GSI +G P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 676 ------VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+PW+ + DN+ FG + + E V + G + YI +
Sbjct: 80 FQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---GAEHKYIWQ- 132
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---------WILSNAIMGPH 777
LSGG R R+ +ARA+ + +LD+ A+DA W +
Sbjct: 133 ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG------ 183
Query: 778 MLQKTRILCTHNV-QAISAADMVVVMDKG 805
K +L TH++ +A+ A +VV+ G
Sbjct: 184 ---KQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTPV 1289
ALH ++ I G V ++G +G+GKS++L L L + ++L +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 1290 RDLRGRFAVVPQSPFLFEG-------SLRDNL-------DPFHMNDDLKIWSVLEKCHVK 1335
RD+R A + ++F+ S+ +N+ PF ++ +K
Sbjct: 79 RDIRKSRA---NTGYIFQQFNLVNRLSVLENVLIGALGSTPF-WRTCFSWFTREQKQRAL 134
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + VG+ F + + S GQ+Q + +ARAL++ +KV+ DE A++D ++A I+ +
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 1396 IS--SECKGMTVITIAHRISTVLNMDE-ILILDHGHLVEQGNPQ 1436
+ ++ G+TV+ H++ L E I+ L GH+ G+ Q
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238
|
Length = 262 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 4e-13
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 1251 IVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIIN-TPVRDLRGRFAVVPQSPF 1304
++G TG+GK++ L L R+ + G G +L+ G +I N V + R R ++ Q P
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111
Query: 1305 LFEGSLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVG 1357
F S+ DN+ H K + + + + E VGL VK+ S S G
Sbjct: 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE----VGLWDAVKDRLSDSPFRLSGG 167
Query: 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417
Q+QL+CLAR L + +VL LDE T+ +D T ++ I S +TVI + H ++
Sbjct: 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR 227
Query: 1418 M-DEILILDHGHLVEQGNPQTLL 1439
+ D + G LVE+G + L
Sbjct: 228 ISDRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 4e-13
Identities = 62/239 (25%), Positives = 108/239 (45%), Gaps = 24/239 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ V+ Y + ++D++FTI G G++G GAGKS+I L + G+I
Sbjct: 5 IDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1337
V G + + R R VVPQ DNLDP F + ++L ++ +E
Sbjct: 63 VLG-EPVPSRARLARVAIGVVPQF---------DNLDPEFTVRENLLVFGRYFGMSTREI 112
Query: 1338 VEAVG-------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 113 EAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE--CSV 1445
++ + S +G T++ H + + D + +L+ G + +G P L+ ++ C+V
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNV 231
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-13
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP---- 674
V++ + L + G + ++G G GK+++L I G G I G I +VP
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86
Query: 675 QVPWILSG-------TIRDNILFG--------KNYDPQSYSETLKACTLDVDISLMVGGD 719
V + T+ +N+ FG P+ E L+ L+ +
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLE---------E 136
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
A K LSGGQ+ R+A+ARAV + + +LD+ LSA+D ++ R + N + L
Sbjct: 137 FA--QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL-RKQMQNEL---KAL 190
Query: 780 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS-------SADLAVSLYSGFWST 827
Q+ T + TH+ +A++ +D +VVM G+++ G+ +L V+ + G
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG--EI 248
Query: 828 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQ-----------EIIEVEQRK 876
N FD ++ + E R A+ ++ + V EI + E +
Sbjct: 249 NIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAE 308
Query: 877 E--GRVELTVYK 886
G V YK
Sbjct: 309 GLIGYVRERNYK 320
|
Length = 375 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (173), Expect = 5e-13
Identities = 59/228 (25%), Positives = 112/228 (49%), Gaps = 9/228 (3%)
Query: 1218 LIEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
++E +N+ +Y K S L+ ++F+I G V I+G+ G+GKS+ + L G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1334
+ +DG + V +LR + +V Q+P F G+ ++ F M N + ++++ V
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--V 121
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
E + AV + F S GQ+Q + +A + +++ LDE T+ +D +
Sbjct: 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 1395 AISSECKG---MTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439
I E K +TV++I H + + D IL++ G ++++ P L
Sbjct: 182 VIH-EIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 40/247 (16%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG--- 1274
IE +N+ ++ LH I+ ++ G V I+G +G+GK+++L + L P G
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1275 -GQILVDG---LNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNL--DPFHMNDDLKIWS 1327
G I +D L+ +R LR V Q+ LF ++ +N+ P
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP----------- 110
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGIS---------FSVGQRQLICLARALLKSSKVLCLD 1378
V+ K KEE A E K G++ S GQ+Q + +ARAL +V+ D
Sbjct: 111 VIVKGEPKEEATARARELLAK-VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
Query: 1379 ECTANVDAQTASILQNAISS---ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
E T+ +D + + N I E + M ++T H +S ++ D + +D G +VEQG
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVT--HEMSFARDVADRAIFMDQGRIVEQGP 227
Query: 1435 PQTLLQD 1441
+ L D
Sbjct: 228 AKALFAD 234
|
Length = 250 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 62/241 (25%), Positives = 107/241 (44%), Gaps = 29/241 (12%)
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288
K ++D++ + G I+G +G+GKS++L + RL G++L+DG +I
Sbjct: 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 1289 VRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE------- 1337
++LR + ++V QS L P H + LE V
Sbjct: 93 RKELRELRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPRAEREERAA 142
Query: 1338 --VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN- 1394
+E VGLE + + S G +Q + LARAL +L +DE + +D +Q+
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 1395 --AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF-SSFV 1450
+ +E T++ I H + L + D I I+ G LV+ G P+ +L + + + F
Sbjct: 203 LLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFF 261
Query: 1451 R 1451
R
Sbjct: 262 R 262
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 17/214 (7%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL +++F + G VG +G GAGKS+ + + P G + V G +++ P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1295 RFAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGL--ETFV 1347
+P+ +P + +R+ L + M L K V+E +E VGL E
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLL------KQRVEEMIELVGLRPEQHK 129
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1407
K + S G RQ + LA+AL+ KVL LDE T +D ++N I + K T+I
Sbjct: 130 KIGQL--SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 1408 IAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
H + V + D ++I++ G +V L
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 6e-13
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 39/229 (17%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTP--ICGGQILVDGLNIINTPV 1289
AL +IN I +G +G GKS++L N ++ L P G+IL+DG NI+ TP
Sbjct: 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL-TPK 86
Query: 1290 RD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVG 1342
+D LR + +V Q P F S+ DN+ F ++++ L + + E VE
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNI-AF----GVRLFEKLSRAEMDERVEWALTKAA 141
Query: 1343 LETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA-QTASILQNAIS 1397
L VK+ SG S S GQ+Q +C+AR + +VL LDE + +D T I + +
Sbjct: 142 LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE--LI 199
Query: 1398 SECKG-MTVITIAHRISTVLNM-------DEILILDHGHLVEQGNPQTL 1438
+E K TV+ + H NM D + G L+E GN T+
Sbjct: 200 TELKQDYTVVIVTH------NMQQAARCSDYTAFMYLGELIEFGNTDTI 242
|
Length = 260 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-13
Identities = 58/239 (24%), Positives = 102/239 (42%), Gaps = 32/239 (13%)
Query: 1218 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
L+E ++VT Y+ L +++ +IE G VG++GR+G GKS++ L L
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 1271 PICGGQILVDGLNIINTP-------VRDLRGRF-----AVVPQSPFLFEGSLRDNL-DPF 1317
G + G ++ RD++ F AV P+ ++R + +P
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPL 115
Query: 1318 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES-GISFSVGQRQLICLARALLKSSKVLC 1376
L + + E ++ VGL + + S GQ Q I +ARAL K++
Sbjct: 116 RHLTSLDESEQKAR--IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173
Query: 1377 LDECTANVDA--QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1432
LDE +N+D Q + + G + I H + V + + ++D G +VE+
Sbjct: 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 7e-13
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 638 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG--------------T 683
++G G GK++LL + G GSI G V VP L T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE--DVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 684 IRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743
+ +N+ FG +K L+ + L+ + A K LSGGQ+ R+ALARA
Sbjct: 59 VEENVAFGLKMRKVP-RAEIKPRVLEA-LRLVQLEEFA--DRKPHQLSGGQQQRVALARA 114
Query: 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVM 802
+ I +LD+ LSA+D ++ + L T + TH+ +A++ +D + +M
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 803 DKGQVKWIGSSADL 816
KG++ IG+ ++
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 7e-13
Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 10/221 (4%)
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288
K L + D + IE G I+G +G+GKS+++ L RL GQ+L+DG++I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 1289 VRDL----RGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL 1343
+L R + A+V QS L ++ DN F M + I + + + + VGL
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDN-TAFGM-ELAGINAEERREKALDALRQVGL 154
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA-ISSECKG 1402
E + S G RQ + LARAL + +L +DE + +D + +Q+ + + K
Sbjct: 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 1403 M-TVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
T++ I+H + + + D I I+ +G +V+ G P +L +
Sbjct: 215 QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255
|
Length = 400 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 7e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------- 675
L V+L + +G +++IG G GKS+LLN I G T G + G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 676 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGV 728
+PW+ T+R+NI + S++ + ++ I+L+ + A G+
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ--- 114
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 786
LSGG + R+A+ARA+ + +LD+ A+DA + R L +M + ++ R+
Sbjct: 115 -LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-LTRGNLQEELM--QIWEEHRVTVLM 170
Query: 787 -THNV-QAISAADMVVVMDKGQVKWIG 811
TH+V +A+ +D VV++ G IG
Sbjct: 171 VTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 8e-13
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
V L+ VS + G + +IG G+GK++L N I G + T GS+ G
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 670 ---IAYVPQVPWILSG-TIRDNILFG------KNYDPQSYSETLKACTLDVDISL-MVG- 717
I Q+P + T+ +N++ + + L VG
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAI 773
D+A LS GQ+ RL +ARA+ + +LD+ + ++ ++A I
Sbjct: 134 ADLAD--RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 774 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 807
G T +L H++ + S AD V V+D+G+V
Sbjct: 192 RG-----ITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 8e-13
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG- 1274
I QNVT+ Y A+ ++ I G ++G +G GKS++L +L R L C
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1275 -GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1324
G++L DG ++ + PV ++R R +V Q P F S+ +N+ + + + D
Sbjct: 72 KGRVLFDGTDLYDPRVDPV-EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ L K V +E + + ESG S S GQ+Q +C+AR + +V+ +DE + +
Sbjct: 131 VERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185
Query: 1385 DAQTASILQNAISSECKGMTVITIAH 1410
D + ++ + K T++ + H
Sbjct: 186 DPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 9e-13
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG---SIHASGSIAYVPQVP 677
V++ +S +P G+ + + G G GKSSL ILGE+ +G + A G + YVPQ P
Sbjct: 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRP 524
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAYIGEKGVN------- 729
++ GT+RD I++ P S + + D D ++ + +I E+
Sbjct: 525 YMTLGTLRDQIIY-----PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579
Query: 730 ---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772
LSGG++ R+A+AR YH +LD+ SAV V ++
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 9e-13
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 22/217 (10%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------INTPVRD 1291
D +FT+ G I GR+G+GK++++ + LT G+I+++G + I P
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE- 73
Query: 1292 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKE 1349
+ R V Q LF S+R NL +K E+ E V E +G+ +
Sbjct: 74 -KRRIGYVFQEARLFPHLSVRGNL-----RYGMKRARPSERRISFERVIELLGIGHLLGR 127
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTV 1405
S G++Q + + RALL S ++L +DE A +D + L+ + +E G+ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEF-GIPI 185
Query: 1406 ITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ ++H + VL + D +++L+ G + G +
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669
L+ VS + G VA++G G+GKS+L + + + G I +G
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75
Query: 670 IAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+ V Q P + L ++R N+ + + S + ++ + + A +K
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAEARARIAELLARLGLAERA--DDKVR 131
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 786
L+GG R R+ +ARA+ H + +LD+ +D I ++ L + + L
Sbjct: 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV----RALARDQGLSVL 187
Query: 787 --THNVQAISAADMVVVMDKGQVKWIGSSADL-----AVSLYSGF 824
TH V I A D +VV+ +G+V G++A+L L + F
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAF 232
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPWILSGTIR 685
L +G + A++G GSGKS+LLN I G G + +G + P +S +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 686 DNILFGKNYDPQSY----SETLKACTLD---VDISLMVGGDMAYIGEKGVNLSGGQRARL 738
+N LF Q+ S LK D ++++L G LSGG+R R+
Sbjct: 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRV 137
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHNVQAISA-A 796
ALAR + + +LD+ +A+D R + + ++ H K T ++ TH + A
Sbjct: 138 ALARVLVRDKPVLLLDEPFAALDP-ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196
Query: 797 DMVVVMDKGQVKWIG 811
VV +D G++ G
Sbjct: 197 QRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVP 674
+ ++L +S + +G +A++G G+GKS+LL + GE+ G++ + I Y
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFD 391
Query: 675 Q--VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-L 730
Q T+ + + + D Q L G+ EK V L
Sbjct: 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLG--------RFGFTGEDQ---EKPVGVL 440
Query: 731 SGGQRARLALARAVYHGSDIYMLD 754
SGG++ARL LA+ + ++ +LD
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLD 464
|
Length = 530 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 32/228 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNIINT-- 1287
AL D++ I ++G +G GKS+ L + R L G++ G N+ +
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 1288 -PVRDLRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
PV LR R +V Q P F S+ DN + + + D ++ L + + +EV+
Sbjct: 114 DPVA-LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
+ SG+ S GQ+Q +C+ARA+ +V+ +DE + +D S +++ I
Sbjct: 173 Q-----LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1401 KGMTVITIAH------RISTVLNMDEILI-LDHGHLVEQGNPQTLLQD 1441
+ TV+ + H RIS D+ + L G LVE + + ++
Sbjct: 228 EEYTVVIVTHNMQQAARIS-----DKTAVFLTGGELVEFDDTDKIFEN 270
|
Length = 285 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 60/227 (26%), Positives = 98/227 (43%), Gaps = 30/227 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII-NTP 1288
AL IN I ++G +G GKS++L L R+ + G ++ +DG +I N
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGLE 1344
V DLR + +V Q P F S+ +N+ L+ + +K + E VE L
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENV-----AYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 1345 TFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
VK+ S GQ+Q +C+AR + V+ +DE T+ +D ++ +
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1401 KGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441
K T++ + H RIS D G LVE + Q + +
Sbjct: 193 KNYTIVIVTHSMQQARRIS-----DRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 54/239 (22%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
+ L+ VSL +PKG + +IG G+GKS+LL I T GS+ G
Sbjct: 11 FGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70
Query: 669 -------------SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACT 707
I + Q +LS T+ +N+ F K Q +E L+
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLE--- 127
Query: 708 LDVDISLMVGGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
+VG + +K LSGGQ+ R+A+ARA+ + I + D+ SA+D +
Sbjct: 128 -------LVG-----LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 764 VARWILS-----NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
+ IL N +G T +L TH ++ + D V V+D+G++ G+ +++
Sbjct: 176 TTQSILELLKDINRELG-----LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 647 SSLLNSILGEMMLTHGSIHASG--------------SIAYVPQVPWI-LSGTIRDNILFG 691
S+LL I G + T G+I G I V Q P + T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 692 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
+ +A VG E LSGGQ+ R+A+ARA+ +
Sbjct: 61 LRDKEAD-ARAEEALE-------RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 752 MLDD 755
+LD+
Sbjct: 113 LLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 40/238 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1274
L+E + ++ + + +++ TI G + ++G +G GK+++L RL I G
Sbjct: 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVL----RL--IAGFET 65
Query: 1275 ---GQILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSV 1328
G+I++DG +I + P R + F QS LF ++ +N+ F L++
Sbjct: 66 PDSGRIMLDGQDITHVPAENRHVNTVF----QSYALFPHMTVFENV-AF----GLRMQKT 116
Query: 1329 LE---KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
V E + V LE F + S GQ+Q + +ARA++ KVL LDE + +D
Sbjct: 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 1386 AQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
+ L+ + +E K G+T + + H L M D I+++ G + + G P+
Sbjct: 177 YK----LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 64/240 (26%), Positives = 92/240 (38%), Gaps = 44/240 (18%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
GLI + K AL I+FTIE G VG +G GAGK++ L L L G+
Sbjct: 18 GLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77
Query: 1277 ILVDGLNIINTPVRDLRGRFAVV------------PQSPFLFEGSLRD--NLDPFHMNDD 1322
+ V GL + + R VV F L +L P
Sbjct: 78 VRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARF--- 130
Query: 1323 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
K + E E + LE + S+GQR +A ALL ++L LDE T
Sbjct: 131 --------KKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
Query: 1383 NVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEI-------LILDHGHLVEQG 1433
+D ++N + + G TV+ +H M +I L++D G L+ G
Sbjct: 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSH------YMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 67/251 (26%), Positives = 111/251 (44%), Gaps = 49/251 (19%)
Query: 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
W +Q P A+ + + G +G+VG +G GKS+ A+ L
Sbjct: 26 WFWQ------------PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA 73
Query: 1273 CGGQILVDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDL 1323
G++ G L + + R +R ++ Q P +L+P M + L
Sbjct: 74 TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA-------SLNP-RMTIGEIIAEPL 125
Query: 1324 KIW-SVLEKCHVKEEVEA----VGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+ + L + VK+ V+A VGL + FS GQ Q I +ARAL+ K++
Sbjct: 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185
Query: 1378 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1432
DE + +D AQ ++LQ + E G+++I IAH ++ V ++ D +L++ GH VE
Sbjct: 186 DEPVSALDVSIQAQVVNLLQ-QLQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL 243
Query: 1433 G-------NPQ 1436
G NP
Sbjct: 244 GTYDEVYHNPL 254
|
Length = 331 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
LIE +NV++R L D+++ + G IVG GAGK+++L+ L P G +
Sbjct: 31 LIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1278 LVDGLNIINTPV-RDLRGRFAVVPQSPFLFEGSLRDN-------LDPFHMNDDLKIW--- 1326
+ G +LR R +V S L E R L F + I+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETVRDVVLSGFF--ASIGIYQED 143
Query: 1327 ---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
L +E +G + S S G+++ + +ARAL+K ++L LDE
Sbjct: 144 LTAEDLAAAQ--WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 1384 VD----AQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQG 1433
+D Q + L+ +++ ++ + H + L+L G +V QG
Sbjct: 202 LDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 53/231 (22%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
VL V L + +G ++A+IG GSGKS+LL I+G + G + G
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72
Query: 670 ------IAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG 717
+ + Q SG T+ +N+ F P L + +I L
Sbjct: 73 YRLRRRMGMLFQ-----SGALFDSLTVFENVAF-----PLREHTRLSEEEIR-EIVLEK- 120
Query: 718 GDMAYIGEKGV------NLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 767
+ +G +G LSGG + R+ALARA+ ++ + D+ + +D +
Sbjct: 121 --LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 768 ILS-NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
I S L T I+ TH++ + AD + V+ G++ G+ +L
Sbjct: 179 IRSLKK-----ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 4e-12
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 40/153 (26%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS----IHASGSIAYV 673
+ V+L +S + G + + G G+GKSSL ++ G + GS + + ++
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGMPEGEDLLFL 69
Query: 674 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733
PQ P++ GT+R+ +++ P DV LSGG
Sbjct: 70 PQRPYLPLGTLREQLIY-----PWD----------DV-------------------LSGG 95
Query: 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
++ RLA AR + H LD+ SA+D +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESED 128
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 4e-12
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 48/191 (25%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
L+ VSL + +G + A++GE G+GKS+L+ + G G I
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------- 58
Query: 681 SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740
+ GK S + +A G M Y LS G+R + +
Sbjct: 59 --------VDGKEVSFASPRDARRA-----------GIAMVY------QLSVGERQMVEI 93
Query: 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNVQAISA-A 796
ARA+ + + +LD+ +A+ + ++ L+ I +H + + A
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLF--KVI--RRLRAQGVAVIFISHRLDEVFEIA 149
Query: 797 DMVVVMDKGQV 807
D V V+ G+V
Sbjct: 150 DRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 4e-12
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 669
E+++ LN VS + +G +++IG GSGKS+ + I G + G I G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE 74
Query: 670 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q P + T+ D++ FG + E + V+ +L + G
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER----VNEALELVGM 130
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 778
+ + LSGGQ+ R+A+A AV I +LD+ S +D + R L I G
Sbjct: 131 QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLELIKTIKGIRDD 189
Query: 779 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
Q T I TH++ ++ +D V+VM GQV+ + +L
Sbjct: 190 YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------ 674
VL V + G V + G GSGKSSL + + + G I G I+ +P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 675 ------QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
Q P + SG+IR N+ E L+ L + + GG A + E G
Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
N S GQR LARA S I ++D+ +++D IL +M +T + H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN-ILQKVVMTA-FADRTVVTIAH 213
Query: 789 NVQAISAADMVVVMDKG 805
V I AD+V+V+ +G
Sbjct: 214 RVSTILDADLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSS---LLNSILGEMMLTHGSIHASG---------- 668
LN +S +P+GS A+IG GSGKS+ L+N +L + I G
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
+ V Q P + T+ D++ FG E +K V L G + YI
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI----VRDVLADVGMLDYI 137
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
+ NLSGGQ+ R+A+A + I +LD+ S +D IL T
Sbjct: 138 DSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV 197
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
I TH++ + AD V+V+D G++ GS ++
Sbjct: 198 ISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 681
L +P G +VA++G G+GKS+LLN I G G I + S V +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 682 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 730
T+ NI G S LK + VG ++ L
Sbjct: 79 ENNLFAHLTVAQNIGLGL-------SPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGEL 130
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHN 789
SGGQR R+ALAR + I +LD+ SA+D R + + +K T ++ TH+
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 790 VQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ A AD VV +D G++ GS+ +L
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 68.9 bits (168), Expect = 5e-12
Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 13/231 (5%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1274
G I ++ + Y + L D++ IE G + ++G++G GK+++L A+ G
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1333
G+I + ++ + P RG A++ Q+ LF + DN+ F + K+
Sbjct: 62 GRIAIADRDLTHAPPHK-RG-LALLFQNYALFPHLKVEDNV-AFGLRAQ-KMPKADIAER 117
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASIL 1392
V + ++ VGL S G +Q I +ARA+ VL LDE + +DA A++
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 1393 QN--AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
+ A+ E +T++ + H L + D+ I+ G L G PQ L
Sbjct: 178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ +IE +N+ + Y AL++IN I + ++G +G GKS+ L L R+ + G
Sbjct: 5 EAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 1276 -----QILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLD---PFH-MNDDLK 1324
++ +G NI N + +LR + +V Q+P F S+ DN+ H D K
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKK 122
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+ ++E+ K L VK+ + +S S GQ+Q +C+AR L V+ +DE
Sbjct: 123 LDEIVEQSLKKS-----ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRI 1412
T+ +D + ++ I + + T+I + H +
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 677
VL +SL + KG +V +IG GSGKS+LL + G GSI G + +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 678 WILSG--------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGGD 719
+ T+ +N+ K E L+ VG
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL-LE-----KVG-- 125
Query: 720 MAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSN 771
+ +K LSGGQ+ R+A+ARA+ + + D+ SA+D +V +
Sbjct: 126 ---LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 772 AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
A G T I+ TH + A AD V+ MD+G++ G +
Sbjct: 183 AEEG-----MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 25/218 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTP--ICGGQILVDGLNIINTPV 1289
AL +IN +I I+G +G GKS+ LN + ++ P G++ +G NI+ V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 1290 R--DLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE----AV 1341
+LR +V Q F S+ DN+ P +I K ++E VE V
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIVEKSLKDV 139
Query: 1342 GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
L VK+ +S S GQ+Q +C+ARAL + VL +DE T+ +D + ++ I
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 1398 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
+ T++ + H + + D+ G LVE +
Sbjct: 200 KLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECND 237
|
Length = 259 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 23/230 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1272
+I +V + Y AL I+ ++G +G GKS+ L L R+ +
Sbjct: 5 IITSSDVHLFYGKF--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1273 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G + + G NI N V LR + +V Q P F S+ +N+ L++ V +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----GLRLAGVKD 117
Query: 1331 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
K + E VE + VK ES +S S GQ+Q +C+AR L V+ LDE T+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1431
+D +++ ++N + T+I + H + + D+ G+L+E
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227
|
Length = 252 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 7e-12
Identities = 59/241 (24%), Positives = 104/241 (43%), Gaps = 47/241 (19%)
Query: 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L++ +N+ RY+ L ++ +I G V IVG +G+GKS++L+ L L G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 1276 QILVDG--LNIINTPVR-DLRGR-FAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVL 1329
++L +G L+ +++ R LR + + Q FH + D ++ L
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQ---------------FHHLLPD----FTAL 101
Query: 1330 E------------KCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373
E KE +E VGLE + S G+RQ + +ARAL+
Sbjct: 102 ENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161
Query: 1374 VLCLDECTANVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
++ DE T N+D A I+ + + + E + + + H + +D +L + G L
Sbjct: 162 LVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
Query: 1431 E 1431
Sbjct: 221 N 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 63/218 (28%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNII--NT 1287
AL D++ I T +G +G GKS+ L L R+ C G+I +DG +I
Sbjct: 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDN---------LDPFHMNDDLKIWSVLEKCHVKEEV 1338
V +LR R +V Q P F S+ +N L D + + L K + EEV
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV 153
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAIS 1397
+ + E G S GQ+Q +C+ARA+ S +V+ +DE C+A TA + + I
Sbjct: 154 -----KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV-EELID 207
Query: 1398 SECKGMTVITIAHRISTVLNMDEILILDH-GHLVEQGN 1434
+ T++ + H + + + H G+LVE G+
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGD 245
|
Length = 267 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 8e-12
Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 22/238 (9%)
Query: 1215 FQGLIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1271
F I NV+ Y P AL++ + T + ++G TG+GKS+++ L
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 1272 ICGGQILVD------GLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNL--DPFHMND 1321
GQ +V L I V+ LR +V Q P LF+ ++ ++ P ++ +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKE-VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 1322 DLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+ + +K V E ++ V L E +VK S S GQ++ + LA + L LDE
Sbjct: 122 NKQ--EAYKK--VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1381 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1435
T +D + N K +I + H + VL + DE++++ G ++ G+P
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235
|
Length = 289 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 9e-12
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 45/227 (19%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
++ VS L +G + ++GE GSGKS+L + G + + GSI G
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 670 ---IAYVPQVP-----------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
I V Q P IL+ +R + +E L+ L +
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF--- 422
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
D Y E LSGGQR R+A+ARA+ + +LD+ +SA+D V +L N +
Sbjct: 423 --LDR-YPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKD 474
Query: 776 PHMLQK----TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
LQ+ T + +H++ + AD V VM G++ G + +
Sbjct: 475 ---LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518
|
Length = 539 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 66/243 (27%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTP---- 1288
AL DI G + ++G +GAGKSS+L L L G + + G + TP
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-----CHV----KEEVE 1339
+R+LR +V Q + NL P H+ +V + C V K++
Sbjct: 77 IRELRRNVGMVFQ---------QYNLWP-HL-------TVQQNLIEAPCRVLGLSKDQAL 119
Query: 1340 A--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1387
A + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D AQ
Sbjct: 120 ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1388 TASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHGHLVEQG------N 1434
SI++ + G+T + + H + S V+ M+ GH+VEQG
Sbjct: 180 IVSIIRELAET---GITQVIVTHEVEVARKTASRVVYMEN------GHIVEQGDASCFTQ 230
Query: 1435 PQT 1437
PQT
Sbjct: 231 PQT 233
|
Length = 242 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 54/218 (24%), Positives = 110/218 (50%), Gaps = 26/218 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG-LNIINTPVRDLR 1293
AL+D++F+++ G ++G GAGK+++++ + T G++L DG ++ P +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 1294 ----GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEA 1340
GR F Q P +FE ++R+NL+ +N D +++ L E+ + E +
Sbjct: 80 RAGIGRKF----QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLAT 134
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DAQTASI--LQNAIS 1397
+GL S GQ+Q + + L + K+L LDE A + DA+T L +++
Sbjct: 135 IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 1398 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
+ +++ + H + V + D++ +L G ++ +G+
Sbjct: 195 GKH---SILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 23/207 (11%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----SIAYVPQ 675
++ VS + G + ++G G+GK++ L + G + G G A +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78
Query: 676 VPWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA-YIGE 725
+S T R+N+ F Y + + L A L+ + M +
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLK--GDELTA-RLEELADRL---GMEELLDR 132
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
+ S G R ++A+ARA+ H + +LD+ + +D R L I L K +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR-ALREFIRQLRALGKCILF 191
Query: 786 CTHNVQAISA-ADMVVVMDKGQVKWIG 811
TH +Q + D VVV+ +G+V + G
Sbjct: 192 STHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 668
LP + A+ G GSGK++L+ I G G I +G
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 669 SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I YV Q + ++R N+ +G K P + + + I ++G +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG--------R 127
Query: 727 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM---LQKT 782
LSGG++ R+A+ RA+ + ++D+ L+A+D IL P++ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL------PYLERLHAEF 181
Query: 783 RILC---THNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNE 829
I +H++Q + AD VVV++ G+V G A++ S + + +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 67/240 (27%), Positives = 113/240 (47%), Gaps = 24/240 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTP--I 1272
L+ Q+V + Y A+ ++N ++ GT ++G +G GK++ L A+ R LTP
Sbjct: 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR 61
Query: 1273 CGGQILVDGLNIINTPVRD--LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1329
G+IL+DG +I V +R R +V Q P F S+ DN+ LK+ +
Sbjct: 62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----GLKLAGIR 116
Query: 1330 EKCHVKEEVE----AVGLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECT 1381
++ H+ E E L VK+ S GQ+Q +C+ARAL ++L +DE T
Sbjct: 117 DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 1382 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
+ +D + + +++ ++ K T+I + H + + D G LVE G L
Sbjct: 177 SALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-11
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
S+ A+ D++F + G VGI G G G++ + ALF L P G+I +DG + R
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 1291 DLRGR-FAVVPQSPF---LFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1345
D A VP+ L S+ +N+ L
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENI-------------AL---------------- 101
Query: 1346 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECKGMT 1404
S G +Q + LAR L + +VL LDE T VD A I + G
Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1405 VITIAHRISTVLNM-DEILILDHGHL 1429
V+ I+ + +L + D IL++ G +
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 27/229 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1291
A+ D + I G +G +G GKS++L +L R+ + G ++ + V
Sbjct: 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82
Query: 1292 ----LRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEAV 1341
+R +V Q P F S+ DN L+ + + ++ L+ + +EV+
Sbjct: 83 DPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK 142
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
+K SG+S S GQ+Q +C+ARA+ +VL LDE + +D ++ + K
Sbjct: 143 -----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1402 GMTVITIAHRISTVLNMDEILIL---------DHGHLVEQGNPQTLLQD 1441
T+ + H + + + + G+LVE G + Q+
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQN 246
|
Length = 261 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-11
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 56/139 (40%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 675
++L +SL + G + ++G G+GKS+LL I GE+ G + ++ I Y Q
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70
Query: 676 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735
LS GG++
Sbjct: 71 ----LS--------------------------------------------------GGEK 76
Query: 736 ARLALARAVYHGSDIYMLD 754
RLALA+ + ++ +LD
Sbjct: 77 MRLALAKLLLENPNLLLLD 95
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-11
Identities = 57/234 (24%), Positives = 109/234 (46%), Gaps = 22/234 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+ ++++ +Y S L I+FT+ G ++G GAGKS+++ + + P G +
Sbjct: 11 LLCARSISKQY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1278 LVDGLNIIN-TPVRDLRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEK- 1331
+ G TP + + +VPQ P LF S+++N+ P K+ +L
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1332 -CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1389
C + + A LE V RQ++ + R L++ S++L LDE TA++ A+T
Sbjct: 129 GCQLDLDSSAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
+ +G+ ++ I+H++ + + D I ++ G + G L D+
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231
|
Length = 510 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 666
+ L ++L +PK + A+IG G GKS+LL S I G+++ I+
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 667 SG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMV 716
+ V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG----PRLHGIKDKK-ELDEIVEESLKK 127
Query: 717 GGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772
+ ++ + LSGGQ+ RL +ARA+ ++ +LD+ SA+D I
Sbjct: 128 AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE--E 185
Query: 773 IMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 807
++ L+K T ++ THN+ QA +D G++
Sbjct: 186 LI--QELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1282
++++ Y+ +AL D++ TI G V ++G +G GK+++LN + G I ++G
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 1283 NIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSV---LEKCHVKEEV 1338
+ VV Q+ L ++ DN+ F L++ + + + +
Sbjct: 67 ----RRIEGPGAERGVVFQNEALLPWLNVIDNVA-F----GLQLRGIEKAQRREIAHQML 117
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
VGLE + S G RQ + +ARAL ++L LDE +DA T +Q +
Sbjct: 118 ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177
Query: 1399 ECK--GMTVITIAHRISTVLNM-DEILILDHG 1427
+ G V+ I H I L + +++L G
Sbjct: 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-11
Identities = 58/228 (25%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG--GQILVDGLNII--NT 1287
AL+ ++ ++G +G+GKS++L ++ R L P G I+ +G NI T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGL 1343
DLR +V Q P F S+ +N+ L++ + +K + E VE +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENV-----VYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 1344 ETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
VK +S + S GQ+Q +C+AR L S K++ LDE T+ +D +A ++ +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 1400 CKGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441
T++ + RIS D G L+E + + + +
Sbjct: 195 KDDYTMLLVTRSMQQASRIS-----DRTGFFLDGDLIEYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-11
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 16/218 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPICGG 1275
+E +NVT Y ++ IN TI+ G + ++G G+GKS+ +L L++ P G
Sbjct: 323 LELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQ-SG 378
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+IL+DG + D R F+ V LF+ L P + + LE+ +
Sbjct: 379 EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPALVEKWLERLKMA 435
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
++E S + S GQ++ + L AL + +L LDE A+ D
Sbjct: 436 HKLELEDGRI----SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 1396 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVE 1431
+ + G T+ I+H ++ D +L + +G L E
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
|
Length = 547 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII--NTP 1288
L +IN I+G +G GKS++L AL R+ I G +L+D NI N
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1348
V +LR R +V Q P F S+ DN+ S L++ V++ + L VK
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV-VEKSLRQAALWDEVK 138
Query: 1349 E----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
+ SG++ S GQ+Q +C+AR L +V+ +DE + +D + ++ + + T
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYT 198
Query: 1405 VITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ + H + D L G LVE G
Sbjct: 199 IAIVTHNMQQAARASDWTGFLLTGDLVEYG 228
|
Length = 251 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+N ++L + KG + +IG GSGK++ + I + T G I G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 669 SIAYVPQ----VPWILSGTIRDNI-----LFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I YV Q P + T+ +NI L + + D ++L+
Sbjct: 76 KIGYVIQQIGLFPHM---TVEENIALVPKLLK-------WPKEKIRERADELLALVGLDP 125
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 778
+ LSGGQ+ R+ +ARA+ + ++D+ A+D + R L
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-ITRDQLQEEFKRLQQE 184
Query: 779 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L KT + TH++ A AD + +M G++ +G+ ++
Sbjct: 185 LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 9e-11
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
S + D++FT+ G +GI G GAG++ + ALF P G+IL+DG + R
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 1291 D-LRGRFAVVP---QSPFLFEG-SLRDNLDPFHMN----DDLKIWSVL----EKCHVKEE 1337
D ++ A VP +S L S+ +N + ++ E+ +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAEN-----ITLASLRRFSRRGLIDRRKERALAERY 384
Query: 1338 VEAVGLETFVKESGI-----SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASI 1391
+ + +K + S G +Q + LAR L KVL LDE T +D A I
Sbjct: 385 IRRLR----IKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440
Query: 1392 LQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ I G ++ I+ + +L + D IL++ G +V
Sbjct: 441 YR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 9e-11
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
N V++ ++L + +G++V ++G G GK+++L + G T G I G
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 669 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDM 720
S A P + ++ +N+ +G E + V +L +V D+
Sbjct: 79 DICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQR----VKEALELV--DL 126
Query: 721 AYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
A ++ V+ +SGGQ+ R+ALARA+ + + D+ LS +DA + R M
Sbjct: 127 AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR----------SMR 176
Query: 780 QKTRIL----------CTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
+K R L TH+ +A + +D V+VM+KG++ IGS +L
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
L VSL + +G ++G GSGKS LL +I G + G I +G
Sbjct: 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71
Query: 670 -IAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I+YVPQ P + T+ NI +G + D + + +I+ M+G D
Sbjct: 72 DISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVL------EIAEMLGID-H 121
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHM 778
+ K LSGG++ R+A+ARA+ I +LD+ SA+D + R L
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR---KE 178
Query: 779 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 811
T + TH+ +A + AD V +M G++ +G
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 41/221 (18%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL DI+F I G +VGI+G GAGKS++L + + G++ V G +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---------KV-- 90
Query: 1295 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGLETF 1346
+P + F+ L R+N+ ++ + + E +E+ L F
Sbjct: 91 -------APLIELGAGFDPELTGRENI---YLRGLILGLTRKEIDEKVDEIIEFAELGDF 140
Query: 1347 VKESGISFSVGQRQLICLARALLKSSK--VLCLDECTANVDAQ----TASILQNAISSEC 1400
+ + ++S G LA ++ + +L LDE A DA L +
Sbjct: 141 IDQPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE--- 195
Query: 1401 KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQ 1440
K T++ ++H + + D + L+HG + +G+P+ ++
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-10
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+F+N+ + P+ + ++F + G + I G G GKSS+ L L P+ GG++
Sbjct: 452 IKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+G+ VPQ P++ G+LRD + ++D+K + +K +++ +
Sbjct: 511 KPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDK-DLEQIL 558
Query: 1339 EAVGLETFVK-ESGIS--------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+ V L ++ E G S S G++Q I +AR + LDECT+ V
Sbjct: 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-- 616
Query: 1390 SILQNAISSECK--GMTVITIAHRIS 1413
++ + C+ G+T+ +++HR S
Sbjct: 617 --VEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1291
AL I+ + G VG+ G GAGKS+++ L + P G G+I G + + +RD
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRD 74
Query: 1292 L-RGRFAVVPQSPFLF-EGSLRDN--------LDPFHMNDDLKIWSVLEKCH--VKE-EV 1338
R ++ Q L E S+ +N L M + + ++E ++
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY----LRAKNLLRELQL 130
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
+A + V + G GQ+QL+ +A+AL K +++L LDE ++++ + IL + I
Sbjct: 131 DADNVTRPVGDYGG----GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1399 -ECKGMTVITIAHRISTV 1415
+ G+ + I+H+++ V
Sbjct: 187 LKAHGVACVYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
V+ + +S L G + + G GSGK++LL I G + G+I G P V
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 681 -----------SGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ T+ +N+ F + + + L+A L +A++
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---------APLAHL--P 124
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
LS GQ+ R+ALAR + I++LD+ +A+DA
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 57/239 (23%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1274
Q I+ +N+ + Y AL +++ I + ++G +G GKS+ + L R+ +
Sbjct: 10 QPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 1275 ----GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI 1325
G++ ++G +I V +LR +V Q P F S+ DN+ H + +
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 1326 WSVLEKCHVKEEVEAVGLETF--VKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
V+E A+ ET +K +S S GQ+Q +C+AR L K++ DE T+
Sbjct: 128 DGVVENAL---RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184
Query: 1384 VDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+D + + +++ I + K T++ + H + + D G L+E G + + +
Sbjct: 185 LDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 669
L ++L + KG + +IG+ GSGKS+L + G + G + SG
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 670 -IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ V Q P + T+ +++ FG P++ VD +L G Y
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFG----PENLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQ +ALA + + + D+V S +D +L I H KT +
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYI 192
Query: 787 THNVQAISAADMVVVMDKGQVKWIGS 812
THN++ + AD ++VMD+G++ G
Sbjct: 193 THNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-------GSIHASGSIA 671
+ + V++ + K + A+IG G GK++LL SI M H G I+ G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIYFKGQDI 72
Query: 672 YVP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL 708
Y P Q P +I DN+ FG K+ + E+LK L
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132
Query: 709 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 768
++ + + + G LSGGQ+ RL +ARA+ ++ +LD+ SA+D + I
Sbjct: 133 WDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI 185
Query: 769 LSNAIMGPHMLQK-----TRILCTHNV-QAISAADMVVVMDKGQV 807
+L++ T ++ THN+ QAI AD + M +G++
Sbjct: 186 EK-------LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
V+ RY L+ ++ I G V +VGR+G GKS++L L L G++L
Sbjct: 16 NAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG- 72
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
P+ + R ++ Q L + DN+ W + + + A
Sbjct: 73 ----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQ----W----RDAALQALAA 120
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-- 1398
VGL E + S GQ+Q + LARAL+ +L LDE +DA T +Q+ I S
Sbjct: 121 VGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLW 180
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
+ G TV+ + H +S + M D +L+++ G +
Sbjct: 181 QQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1274
L+E +N+T + + A L +++ + G V + G GAGKS+++ L + P G
Sbjct: 5 LLEMKNITKTF-GGVKA-LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61
Query: 1275 GQILVDGLNIINTPVRD--------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
G+I+ +G + + +RD + A+V + L L + + P + D ++
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 1327 SVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+K + +++ + T V G+ GQ+QL+ +A+AL K +++L LDE TA++
Sbjct: 122 LRAQK--LLAQLKLDINPATPVGNLGL----GQQQLVEIAKALNKQARLLILDEPTASLT 175
Query: 1386 AQTASILQNAISS-ECKGMTVITIAHRISTV 1415
++L + I + G+ I I+H+++ V
Sbjct: 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEV 206
|
Length = 506 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 23/218 (10%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
+ ++ T G+ G++G G+GKS++L L G + + G+++ R R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 1296 FAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETF 1346
A+V Q S ++RD + P +W+ + H V + L
Sbjct: 77 VALVEQDSDTAVPLTVRDVVALGRIPH-----RSLWA-GDSPHDAAVVDRALARTELSHL 130
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQTASILQNAISSE--CKG 1402
+ S G+RQ + +ARAL + K+L LDE T ++D AQ ++ A+ E G
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL---ALVRELAATG 187
Query: 1403 MTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+TV+ H ++ + D +++LD G +V G P+ +L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------IAYVPQ---V 676
L KG L+ ++G G+GK++LL +ILG + G++ +G+ I YVPQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQR 735
W ++ ++ G+ A V +L G + + ++ V LSGGQR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-LTELADRPVGELSGGQR 119
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRILCTHN-VQA 792
R+ +ARA+ + +LD+ + +D + L + G ++ TH+ QA
Sbjct: 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT---AILMTTHDLAQA 176
Query: 793 ISAADMVVVMDKGQVKWIGSSADL 816
++ D VV+++ G+V G+ L
Sbjct: 177 MATCDRVVLLN-GRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-10
Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 28/221 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DG---LNIINTPV- 1289
+H+ + IE G ++G +G+GKS++L A+ L P+ G +LV DG +++ N
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA 98
Query: 1290 --RDLR-GRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLE---KCHVKEEVE 1339
R LR R ++V Q P+ ++ +N+ F L++ + + + V E++E
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWR---TVEENV-AF----GLEMQGMPKAERRKRVDEQLE 150
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AI 1396
VGL + S G +Q + LARA + +L +DE + +D + LQ+ +
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 1397 SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
S+ K T++ ++H + L + + I I++ G +++ G P+
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPE 250
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR- 1293
AL+D++ ++ G I+G GAGK+++++ + T G +L G ++ P +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 1294 ---GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEAV 1341
GR F Q P +FE ++ +NL+ + D +++ L EK ++E +E +
Sbjct: 77 AGIGRKF----QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DA---QTASILQNAIS 1397
GL S GQ+Q + + L++ K+L LDE A + D +TA +L++ ++
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190
Query: 1398 SECKGMTVITIAH------RIS---TVLNMDEIL 1422
+ +V+ + H I+ TVL+ +L
Sbjct: 191 GKH---SVVVVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 3e-10
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669
L VS + +G VA++G GSGKS+L + G ++ G+I G
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 670 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ V Q P + T++D++ FG E ++ VD +L G ++ +
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER----VDQALRQVGMEDFLNREP 138
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC- 786
LSGGQ+ R+A+A + DI +LD+ S +D + R +L + ++ I
Sbjct: 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV---RQLKEQKGITVL 195
Query: 787 --THNVQAISAADMVVVMDKGQVKWIG 811
TH++ + AD V+VM+KG++ G
Sbjct: 196 SITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY + L +++ +PK + A+IG G GKS+LL I G+++
Sbjct: 15 WY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69
Query: 659 LTHGSIHASGS--------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
+I SG+ I V Q P +I +N+ +G P+ + E K TLD
Sbjct: 70 YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKK-TLDT 124
Query: 711 DISLMVGGDMAY------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
+ + G + + + ++LSGGQ+ RL +AR + ++ ++D+ SA+D +
Sbjct: 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-I 183
Query: 765 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 807
A + + I L+K T I+ THN+ QA +D M G++
Sbjct: 184 ATAKIEDLIE---DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-10
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 33/160 (20%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 675
L ++L L G L+ V+G G GK++LLN I G + HGSI G P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 676 ------VPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+PW ++DN+ FG K + + LK L+ G + Y
Sbjct: 76 FQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-------GAEKRY 125
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
I + LSGGQR R+ +ARA+ + +LD+ A+DA
Sbjct: 126 IWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-10
Identities = 67/245 (27%), Positives = 117/245 (47%), Gaps = 27/245 (11%)
Query: 1215 FQGLIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1267
+ L+E +N+ T RY+ A+ ++FT+ G + I+G G+GKS++ L
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 1268 RLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN------LD-PFH 1318
+ G++L+D L+ + R R R ++ Q P SL LD P
Sbjct: 61 GMIEPTSGELLIDDHPLHFGDYSYRSQRIR--MIFQDP---STSLNPRQRISQILDFPLR 115
Query: 1319 MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+N DL+ EK + E + VGL + GQ+Q + LARAL+ KV+
Sbjct: 116 LNTDLEP-EQREK-QIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173
Query: 1378 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
DE A++D S L N + E +G++ I + + + ++ D++L++ G +VE+G+
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233
Query: 1435 PQTLL 1439
+L
Sbjct: 234 TADVL 238
|
Length = 267 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-10
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQVPW 678
+L++++ + G + + GE G+GK+SLL ++ G G I A ++ ++PQ P+
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466
Query: 679 ILSGTIRDNILF---GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----L 730
+ GT+R+ + + ++ L L + + L
Sbjct: 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL----------DEEDRWDRVL 516
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
SGG++ RLA AR + H LD+ SA+D +
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
|
Length = 604 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 41/223 (18%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------ASGS------- 669
L V++ +P GS VA+IG GSGKS+LL + G + T G++ +G
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 670 ----IAYVPQVP--WILSGTIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMA 721
+ V Q P + T+ +I FG P ++ SE A ++ +VG
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG----PMNFGVSEE-DAKQKAREMIELVGLPEE 137
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--- 778
+ LSGGQ R+A+A + ++ +LD+ + +D + R +M M
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GR----KEMME--MFYK 190
Query: 779 LQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L K T +L TH+++ A AD +VVM KG V G+ ++
Sbjct: 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-10
Identities = 62/229 (27%), Positives = 104/229 (45%), Gaps = 38/229 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRD 1291
A+ ++F + G + +VG +G+GKS+ AL RL GG+I+ +G I ++
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWSVLE----KCHVKEEVEAVG 1342
LR + Q P+ +LDP + + L++ +L V +E VG
Sbjct: 399 LRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451
Query: 1343 LET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
L + E FS GQRQ IC+ARAL + KV+ DE + +D + N +
Sbjct: 452 LLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL 507
Query: 1398 SECK--GMTVITIAHRISTVLNMD-EILILDHGHLVEQG-------NPQ 1436
+ G+ + I+H ++ V + + ++ G +VE G NPQ
Sbjct: 508 DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQ 556
|
Length = 623 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 22/221 (9%)
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----IC-GGQI 1277
+ + ++ L D NFT+ + G +G+GK+S++N + LT I G++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
LVD I P + R V Q LF ++R NL +W + +
Sbjct: 62 LVDAEKGIFLPPE--KRRIGYVFQDARLFPHYTVRGNL-------RYGMWKS-MRAQFDQ 111
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQ-- 1393
V +G+E + + S G++Q + + RALL + ++L +DE A++D IL
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 1394 NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ E + ++ ++H + VL + D +++L++G + G
Sbjct: 172 ERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L++I+F++ G I G +G GKS++L + L G +L +G +I R +
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 1296 FAVVPQSPFLFEGSLRDNL-----------DPFHMNDDLKIWSVLEKCHVKEEVEAVGL- 1343
+ Q+P LF ++ DNL DP DDL E L
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDL---------------ERFALP 127
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECK 1401
+T + ++ S G++Q I L R L KVL LDE T+ +D + I +
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 1402 GMTVITIAHRISTVLNMDEILIL 1424
+ V+ + H + + D+++ L
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 45/230 (19%)
Query: 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L++ N+ RY+ LH+++F+I G + IVG +G+GKS++L+ L L G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 1276 QILVDG--LNIINTPVR-DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1330
++ +G ++ +++ + +LR + + F+++ FH L ++ LE
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQ-----KLGFIYQ---------FH--HLLPDFTALENV 108
Query: 1331 --------------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376
E + AVGLE S G+RQ + +ARAL+ + +++
Sbjct: 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
Query: 1377 LDECTANVDAQTA----SILQNAISSECKGMTVIT----IAHRISTVLNM 1418
DE T N+DA+ A +L + V+T +A R+S L M
Sbjct: 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218
|
Length = 233 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 53/245 (21%)
Query: 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQIL 1278
+ ++ MR+ + T+E G +V I+G +GAGKS++LN A F LTP G +
Sbjct: 11 YHHLPMRF-----------DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTP-ASGSLT 57
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----------MNDDLKIWSV 1328
++G + TP + P S LF+ +NL H +N LK+ +
Sbjct: 58 LNGQDHTTTPP-------SRRPVS-MLFQ---ENNLFS-HLTVAQNIGLGLNPGLKL-NA 104
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1387
++ + +G+E + S GQRQ + LAR L++ +L LDE + +D A
Sbjct: 105 AQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164
Query: 1388 TASILQNAISSEC--KGMTVITIAH------RISTVLNMDEILILDHGHLVEQGNPQTLL 1439
+L +S C + +T++ ++H RI+ +++ D G + G LL
Sbjct: 165 RQEMLT-LVSQVCQERQLTLLMVSHSLEDAARIAP----RSLVVAD-GRIAWDGPTDELL 218
Query: 1440 QDECS 1444
+ S
Sbjct: 219 SGKAS 223
|
Length = 232 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------------IAYVP 674
+ + G G+GKS+LL I G G+I +G+ I V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 675 Q----VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
Q P + +R+N+ FG D S E L + + ++ Y +
Sbjct: 82 QQYALFPHL---NVRENLAFGLKRKRNREDRISVDELLDL----LGLDHLLN---RYPAQ 131
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRI 784
LSGG++ R+ALARA+ ++ +LD+ SA+D + R L + L I
Sbjct: 132 ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-RLQLLPELKQIKKNLNIPVI 186
Query: 785 LCTHN-VQAISAADMVVVMDKGQVKWIG 811
TH+ +A AD +VVM+ G++++IG
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 667
V+N VSL + +G +V ++G G+GK++ I+G + G I A
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 668 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I Y+PQ I T+ +NIL G + + E L+ + I+
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EKLEELLEEFHIT-------H 125
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAIMG 775
K +LSGG+R R+ +ARA+ +LD+ + VD + I L + +G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 776 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 817
+L T HNV + +S D ++ +G+V G+ ++A
Sbjct: 186 --------VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-10
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+N L + KG + ++G GSGKS+ + + + T G I G
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 669 -----SIAYVPQ-VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q TI N G + Q E V + +
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG---LEEYE 123
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 778
Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + + +
Sbjct: 124 HRYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDP-LIRDSMQDELKKLQAT 178
Query: 779 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
LQKT + TH++ +AI D +V+M G++ +G+ ++
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 52/229 (22%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+L+ VSL L G ++A++G G+GKS+LL ++ GE+ G + +G
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 669 SIAYVPQ-VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
A +PQ T+++ + G +P+ D+S
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-------GL 128
Query: 723 IGEKGVNLSGGQRARLALAR------AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
G LSGG++ R+ LAR LD+ SA+D +++
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD-------IAHQH--- 178
Query: 777 HMLQKTRILCT---------HNVQAISA-ADMVVVMDKGQVKWIGSSAD 815
H L+ R L H++ + AD +V++ +G+V GS D
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 5e-10
Identities = 57/213 (26%), Positives = 89/213 (41%), Gaps = 39/213 (18%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL D++F + G ++G++GR GAGKS++L L + P G + V G +
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RV---------- 85
Query: 1295 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1346
S L F L R+N+ ++N L S E +E+ L F
Sbjct: 86 -------SSLLGLGGGFNPELTGRENI---YLNGRLLGLSRKEIDEKIDEIIEFSELGDF 135
Query: 1347 ----VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1401
VK +S G + + A A +L +DE A DA Q + K
Sbjct: 136 IDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 1402 GMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
G TVI ++H S++ + D L+L+ G + G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 48/248 (19%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICG 1274
IE +N+ ++ L +H ++ T++ G + +VG +G+GKS A + P
Sbjct: 5 IELRNIALQAAQPL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 1275 GQILVDGLNIINTPV--RDLRGR-FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLE 1330
G++L+DG PV LRGR A + Q+P R +P H M+ E
Sbjct: 62 GRVLLDG-----KPVAPCALRGRKIATIMQNP-------RSAFNPLHTMHT-----HARE 104
Query: 1331 KCHVK----------EEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
C +EAVGLE +K S G Q + +A ALL + +
Sbjct: 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
Query: 1378 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ 1432
DE T ++D A+ +L++ + GM ++T H + V + D++ ++ HG +VEQ
Sbjct: 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVT--HDMGVVARLADDVAVMSHGRIVEQ 222
Query: 1433 GNPQTLLQ 1440
G+ +TL
Sbjct: 223 GDVETLFN 230
|
Length = 254 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 6e-10
Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 86/418 (20%)
Query: 442 TEKMMKQKDERIRRTGEILTHI-------RTLKMYGWEQIFSSWLMKTRSSEVK----HL 490
T + +KQ + R I +H+ T++ +G + F + K + +L
Sbjct: 1048 TSQQLKQLESEAR--SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105
Query: 491 STRKYLDAWC----VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 546
ST ++ VFF F TF A+ +Q V L L +++S
Sbjct: 1106 STLRWFQMRIDIIFVFF-------FIAVTF--IAIGTNQDGEGEVGIILTLAMNILS--- 1153
Query: 547 SFPWVINGLIDA---FISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 603
+ W +N ID S+ R+ +F+ +L Q PS G S + +
Sbjct: 1154 TLQWAVNSSIDVDGLMRSVSRVFKFI-------DLPQEEPRPS--GGGGKYQLSTVLVIE 1204
Query: 604 MQDATCSWYCNNE-----------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 652
A W + E VL +S + G V ++G GSGKS+LL++
Sbjct: 1205 NPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264
Query: 653 ILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP--Q 697
+L ++ T G I G + +PQ +I SGT R KN DP Q
Sbjct: 1265 LL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR------KNLDPYEQ 1317
Query: 698 SYSETLKACTLDVDISLMVG---GDMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYML 753
E + +V + ++ + ++ G LS G + + LAR++ + I +L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 754 DD---VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
D+ L V Q+ R L + T IL H V+A+ +V++ VK
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFS-----NCTVILSEHRVEALLECQQFLVIEGSSVK 1430
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298
++FT+ G + + G G GK+++L L L G++ +G T + + R
Sbjct: 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-----TALAEQRDE--- 70
Query: 1299 VPQSPFLFEG---------SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
P L+ G S +NL H I L AVGL F
Sbjct: 71 -PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDAL---------AAVGLTGF 120
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1404
S GQ++ + LAR L + + LDE T +D ++L + + G+
Sbjct: 121 EDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 1405 VIT 1407
++T
Sbjct: 181 LLT 183
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1287
A+ +N I I+G +G GKS+ L A+ R L P C G ++ DG +I T
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH-MNDDLKIWSVLEKCHVK----EEVE 1339
LR + +V Q P F S+ DN+ H +ND ++ ++EK K +EV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
+ ++ + S GQ+Q +C+AR L ++L LDE T+ +D + + +++ I E
Sbjct: 174 -----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI-QE 227
Query: 1400 CKGMTVITI-------AHRISTVLNMDEILILDHGHLVE 1431
+G I I A R+S D + G LVE
Sbjct: 228 LRGSYTIMIVTHNMQQASRVS-----DYTMFFYEGVLVE 261
|
Length = 286 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
L ++L + G VA+IG G+GKS+LL I + + GSI G
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73
Query: 669 ------SIAYVPQ-VPWILSGTIRDNILFGK-NYDP------QSYSETLKACTLD----V 710
I + Q I T+ +N+L G+ Y P +SE K L V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
++ D AY + LSGGQ+ R+A+ARA+ D+ + D+ ++++D + ++ ++
Sbjct: 134 GLA-----DKAYQ--RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD 186
Query: 771 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T I+ H V A AD +V + G++ + G+ ++L
Sbjct: 187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 8e-10
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L +N TI+ G + ++G +G GKS++LN + L G ++++G I P D R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ-ITEPGPD---R 56
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE-VEAVGLETFVKESGISF 1354
V L ++R+N+ ++ L S E+ + EE + VGL +
Sbjct: 57 MVVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRI 1412
S G +Q + +ARAL KVL LDE +DA T LQ + + +TV+ + H +
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 1413 STVLNM-DEILILDHG 1427
L + D +++L +G
Sbjct: 176 DEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-10
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+++ V + P GSL ++G GSGKS+LL + G + G++ +G
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 670 -IAYVPQ-VPWILSGTIRDNILFGK-------NYDPQSYSETLKACTLDVDISLMVGGDM 720
+A V Q + T+RD + G+ D + + ++S + DM
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAIMGPHM 778
+ LSGG+R R+ +ARA+ + +LD+ + +D AQ+ L +
Sbjct: 136 S-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-- 186
Query: 779 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T + H++ A S D VVV+D G+V G ++
Sbjct: 187 -GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 56/229 (24%), Positives = 108/229 (47%), Gaps = 23/229 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV---------DGLNII 1285
AL++I++T E I+G +G+GKS+++ L G I V + +I
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1286 NTPV-------RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
P ++LR R ++V Q P LF+ ++ ++ + L + K K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSEAKKLAKF 158
Query: 1337 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ +GL +++++ S S GQ++ + +A L ++L DE TA +D + +
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 1396 I-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
I ++ TV I H + VL + DE++++D G +++ G P + D+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 656
S D+ + +++ C + +E + V LN +S K + +IG GSGKS+L+ G
Sbjct: 17 SDDIILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 657 MMLTHGSIHASG-----------------------------SIAYVPQVP--WILSGTIR 685
+ +G+I ++ V Q P + TI
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 686 DNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745
+I+FG SE K ++ +G D +Y+ LSGGQ+ R+A+A +
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDK 804
+I + D+ + +D + ++ I+ KT + TH + + AD V+VMDK
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 805 GQV 807
G++
Sbjct: 252 GKI 254
|
Length = 320 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 15/205 (7%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1292
L DIN I G V + G +G+GK+++L + L + G + V G + ++L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 1293 RGRFAVVPQSPFLFEGSL--RDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE 1349
R + Q+ L G L R N+ + +L E+ +EAVGL +
Sbjct: 81 RRNIGYIFQAHNLL-GFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDY 137
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
+ S GQ+Q + +ARAL+ K++ DE TA +D+++ + + + G T++
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 1408 IAH--RISTVLNMDEILILDHGHLV 1430
+ H RI V D I+ ++ G L+
Sbjct: 198 VTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
L+ V++ + G V +IG GSGKS+L+ + G + T G I G
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
+ V Q P + TI +I FG S E ++ +VG D
Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDY 137
Query: 724 GEKG-VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK- 781
+K LSGGQ+ R+A+A V I +LD+ + +D + IL N I H
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNM 196
Query: 782 TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815
T IL +H+++ ++ AD ++VM+KG+ + G+ +
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ VSL L G + ++G G+GK++L+ + + G+I G
Sbjct: 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72
Query: 670 -IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT---LDVDISLMVGG-DMAYIG 724
I Y+PQ + N + Y LK + + ++ ++
Sbjct: 73 RIGYLPQEF-----GVYPNF---TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 725 EKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQ--VARWILSNAIMGPHMLQ 780
+K + LSGG R R+ +A+A+ I ++D+ + +D + R +LS L
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-------LG 177
Query: 781 KTR--ILCTHNVQAISA-ADMVVVMDKGQVKWIG 811
+ R IL TH V+ + + + V V++KG++ + G
Sbjct: 178 EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 1e-09
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L + L + KGS A+IG GSGKS+LL + G + T G +
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSY------SETLKACTLDVDISLMVG 717
+ V Q P + T+ ++ FG PQ++ +E + A L+ MVG
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFG----PQNFGIPKEKAEKIAAEKLE-----MVG 132
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ + LSGGQ R+A+A + ++ +LD+ + +D + AR + H
Sbjct: 133 LADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK-ARIEMMQLFESIH 191
Query: 778 MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
+T +L TH + ++ AD V +++KG + G+ +D+
Sbjct: 192 QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
+N VSL + G +V +IG G+GK++L N I G + G++ G
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 670 ---IAYVPQVPWILSG-TIRDNILFGK-NYDPQSYSETLKACTLDVDISL--------MV 716
IA Q+ + G T+ +N+ G S + + V
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 717 G-GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
G G++A NLS GQ+ RL +ARA+ + +LD+ + ++ + + I
Sbjct: 138 GLGELAD--RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 776 -PHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 807
T +L H+++ + AD +VV++ G+V
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHASG--------- 668
VVL+ VSL +PKG + ++IG G+GKS+LL S++ ++ G I G
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 669 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVD--ISLMVGGDMA 721
++ + Q I S T+RD + FG+ P S K ++ I + D++
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRF--PYSQGRLTKEDRRIINEAIEYLHLEDLS 129
Query: 722 --YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
Y+ E LSGGQR R +A + +D +LD+ L+ +D + + I+ L
Sbjct: 130 DRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 780 QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
KT ++ H++ S +D +V + G+V GS ++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-09
Identities = 68/239 (28%), Positives = 107/239 (44%), Gaps = 32/239 (13%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
Q I +VT+ ++ AL D +FT+ GG+ +VG G+GKS++ AL + G
Sbjct: 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 1276 QILVDGLNIINTPVRD-LRGRF-AVVPQS-------PFLFEGSLRDNLDPF-HMNDDLKI 1325
+I +I+ P R L+ A VPQS P L E + + + HM
Sbjct: 63 KI-----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMG----- 110
Query: 1326 WSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
W K ++ V A V + F S GQ++ + LARA+ + +V+ LDE
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 1382 ANVDAQT-ASI--LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQT 1437
VD +T A I L + E K M V T H + +V + ++ G ++ G +T
Sbjct: 171 TGVDVKTEARIISLLRELRDEGKTMLVST--HNLGSVTEFCDYTVMVKGTVLASGPTET 227
|
Length = 272 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--Q 675
Q+ V + VSL + KG + A++G G GKS+LL + G T G I G +++VP Q
Sbjct: 32 QHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 676 VPWIL---------SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
P + T+ NI FG D +E V+ L + + K
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI----ASRVNEMLGLVHMQEFAKRK 146
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQR R+ALAR++ + +LD+ + A+D ++ + + + T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 787 THNV-QAISAADMVVVMDKGQVKWIGS 812
TH+ +A++ A + +M++G+ IG
Sbjct: 207 THDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 17/208 (8%)
Query: 1241 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1300
+ + G +G++G GAGK+++L A+ L P G + V G VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 1301 QSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEK------CHVKEEVEAVGLETFVKESGI 1352
Q E + + H M+ L + V++ + VGL
Sbjct: 56 QR---HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHR 1411
S GQRQ + +ARAL VL LDE +D T +L G ++ H
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Query: 1412 ISTVLNMDEILILDHGHLVEQGNPQTLL 1439
++ + + ++L +G ++ G PQ L
Sbjct: 173 LAQAMATCDRVVLLNGRVIADGTPQQLQ 200
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ ++ Y PA L DIN T+E G + ++G +G GK+++LN + P G I
Sbjct: 1 MLQISHLYADY-GGKPA-LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL--RDNLDPFHMNDDLKIWSVLEKCHVK 1335
+DG PV VV Q+ EG L R+ D L +++ +
Sbjct: 59 TLDG-----KPVEGPGAERGVVFQN----EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA 109
Query: 1336 EEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
++ VGLE K S GQRQ + +ARAL + ++L LDE +DA T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1395 AISS--ECKGMTVITIAHRISTVLNMDEILIL---DHGHLVE 1431
+ + G V+ I H I + M L+L G +VE
Sbjct: 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211
|
Length = 255 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-09
Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 24/223 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1287
A+ D++ + I+G +G GKS++L ++ R+ + G+IL+D +I +
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1288 -PVRDLRGRFAVVPQSPFLFEG-SLRDN-LDPFHMNDDLK-------IWSVLEKCHVKEE 1337
PV +R R +V Q P F S+ DN + + +N + + S L++ + +E
Sbjct: 79 DPV-SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
V+ +K + + S GQ+Q +C+AR + +V+ +DE + +D + ++ I
Sbjct: 138 VK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 1398 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+ T+I + H + + D G LVE G + +
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235
|
Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 46/242 (19%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT------------PICGGQILVDGL 1282
AL ++ I + ++G +G GKS+ L L R+ + G I DG+
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 1283 NIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---------------------DPFHMND 1321
N++ +LR R +V QSP F S+R+N+ D D
Sbjct: 120 NLV-----ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
+L + L + + +EV + ++ + S GQ+Q +C+AR L +V+ +DE
Sbjct: 175 EL-VERSLRQAALWDEVN-----DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1382 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE--ILILDHGHLVEQGNPQTLL 1439
+ +D S +++ I + TV+ + H + + + + L G LVE + +
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIF 288
Query: 1440 QD 1441
++
Sbjct: 289 EN 290
|
Length = 305 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
A ++FT+ G + + G G+GK+++L L L+P G++L++G P+ R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-----GPLDFQR 68
Query: 1294 GRFAVVPQSPFLFEG---------SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGL 1343
A L+ G S+ +NL +H + D ++ L + VGL
Sbjct: 69 DSIA----RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR---------VGL 115
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-- 1401
F S GQ++ + LAR LL + LDE T +D + A++ C
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 1402 GMTVITIAH 1410
GM V+T
Sbjct: 176 GMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 1216 QGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
+ F + + P AL DI+F G ++G GAGKS++L L
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 1274 GGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLK-IWSVLE 1330
G IL+DG + L A++ Q L E ++ +NL + + L
Sbjct: 58 AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL 117
Query: 1331 KCHVKEEVEAVGL----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+E++E +G+ +T +K S+GQRQ++ +A+AL ++++V+ DE T+++ A
Sbjct: 118 NYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1387 QTASILQNAISS-ECKGMTVITIAHRISTVLNMDEI 1421
+ L I +G ++ ++HR M+EI
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHR------MEEI 203
|
Length = 501 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN-ALFRLTP--IC 1273
G++ +NV++R S L ++NFTI G V ++G +G GKS++L+ + L C
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1332
G++ ++ + P + + ++ Q LF S+ NL F + LK +
Sbjct: 59 TGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNL-LFALPATLK--GNARRN 113
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
+E GL+ + + S GQR + L RALL K L LDE + +D
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173
Query: 1393 QNAISSECK--GMTVITIAH 1410
+ + SE + G+ + + H
Sbjct: 174 RQWVFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 60/234 (25%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 670
+Y + L ++L +PK + A+IG G GKS+LL L M G +
Sbjct: 16 YYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEV 69
Query: 671 AY---------------------VPQVPWILSGTIRDNILFG------KNYDPQSYSET- 702
V Q P +I DN+ +G K+ + E+
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 703 LKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 760
LK L +V L + + LSGGQ+ RL +ARA+ ++ ++D+ SA+
Sbjct: 130 LKKAALWDEVKDRL---------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 761 D----AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 807
D ++ I L+K T ++ THN+ QA +D G++
Sbjct: 181 DPISTLKIEELITE--------LKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----------------HA 666
LN VSL +P G + VIG G+GKS+L+ + T GS+ A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 667 SGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
I + Q +LS T+ N+ D E + T ++ +VG +G+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT---ELLALVG-----LGD 132
Query: 726 KG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
K NLSGGQ+ R+A+ARA+ + + D+ SA+D + IL L
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 782 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
T +L TH + + D V V+ G++ G+ +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1276
++EF+NV+ Y L D++F I+ G ++ IVG GAGKS++L L L P+ G
Sbjct: 321 VLEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ + + I Q RD LDP D + + E +
Sbjct: 380 KVGETVKI------------GYFDQH--------RDELDP----DKTVLEELSEGFPDGD 415
Query: 1337 EVEAVG-LETF------VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
E E L F ++ S G++ + LA+ LL+ +L LDE T ++D ++
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 1390 SILQNAISSECKGMTVITIAH 1410
L+ A+ + +G TV+ ++H
Sbjct: 476 EALEEAL-LDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-- 653
SK++ + +Q+ T S Y E +NV + +P+G + A+IG G GKS++L S+
Sbjct: 8 ISKNIIISLQNVTIS-YGTFEAVKNVFCD-----IPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 654 ---LGEMMLTHGSIHASGSIAYVPQV---------------PWILSGTIRDNILFGK--- 692
L E G + G+ Y P+V P +I +NI FG
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 693 ----NYDPQSYSETLKACTLD--VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746
+ D KA D D + E G +LSGGQ+ RL +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADM 798
++ ++D+ SA+D ++ + + H L+K T ++ THN+ QA+ +DM
Sbjct: 172 EPEVILMDEPCSALDP-ISTLKIEETM---HELKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 15/219 (6%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILV--DGLNIINT 1287
AL +IN + ++G +G GKS+ L R+ + G+I++ D +NI++
Sbjct: 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 1288 PVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1345
V ++R R ++V Q P F S+ +N+ +K S+LE+ V+ + L
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAALWD 149
Query: 1346 FVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
VK+ + S GQ+Q +C+ARAL ++L DE T+ +D + ++ IS
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209
Query: 1402 GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+T++ + H + + D + G L+E G T+
Sbjct: 210 KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248
|
Length = 265 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1287
AL +IN I I+G +G GKS+ + L R L P G+IL NI +
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAV---- 1341
V +LR +V Q P F S+ DN+ P KI + +K + E VE
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGP-------KIHGIKDKKTLDEIVEKSLRGA 151
Query: 1342 ----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
L+ + ++ S GQ+Q +C+AR L V+ +DE T+ +D + ++ +
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 1398 SECKGMTVITIAH 1410
K ++I + H
Sbjct: 212 ELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 3e-09
Identities = 56/229 (24%), Positives = 104/229 (45%), Gaps = 25/229 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + VT + A+ +I+F + G G++G GAGK++ + L G+I
Sbjct: 3 LEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1335
+G ++ +++ R +P+ E L + D LK + L K ++
Sbjct: 61 WNGGP-LSQEIKN---RIGYLPE-----ERGLYPKMTVE---DQLKYLAELKGMPKAEIQ 108
Query: 1336 EEVEAVGLE----TFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
++++A LE K I S G +Q I A++ ++L LDE + +D
Sbjct: 109 KKLQAW-LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1391 ILQNAI-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1437
+L++AI + +G T+I +HR+ V + D +L+L G V G +
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1287
A+ D+N IE + +G +G GKS++L L R+ + G++L+DG ++
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1288 -PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AV 1341
PV +R +V Q P F S+RDN+ LK+ V K + E VE
Sbjct: 79 DPV-AVRRTIGMVFQRPNPFPTMSIRDNVVA-----GLKLNGVRNKKDLDELVEKSLRGA 132
Query: 1342 GLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1382
L VK+ G S GQ+Q +C+ARA+ VL +DE C+A
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
|
Length = 258 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRD 1291
A++D+NF++ G +GIVG +G+GKS AL L GG +G I+N P ++
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90
Query: 1292 L-RGR---FAVVPQSPFLFEGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEE--------V 1338
L + R +++ Q P +L+P+ + + L +L K K E +
Sbjct: 91 LNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1339 EAVGLETFVKESGI---SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASI 1391
+AV + K + FS G RQ + +A ALL K+L DE T +D AQ ++
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
L N + E +I I H + V + D++L++ G +E GN
Sbjct: 204 L-NELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
|
Length = 330 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 45/221 (20%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 668
VS L +G +A+IGE GSGKS+L + G + T G I +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 669 -----SIAYVP--QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG--GD 719
+ + P ++ IL +R N + +P+ + + TL MVG D
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLN----TDLEPEQRRKQIFE-TLR-----MVGLLPD 141
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
A L+ GQ+ R+ALARA+ I + D+ L+++D + R L N ++ +
Sbjct: 142 HANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLDMSM-RSQLINLML--ELQ 196
Query: 780 QKTRILCTHNVQAISA----ADMVVVMDKGQVKWIGSSADL 816
+K I + Q I +D V+VM +G+V GS+AD+
Sbjct: 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 669
L +SL +P+GS A++G G+GKS+LL + G + G + G
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 670 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ V Q P + S T+ D++ FG P + V+ +L + +
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG----PVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+LS GQ+ R+A+A + D+ +LD+ ++ +D + ++ + H KT I+ T
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVAT 195
Query: 788 HNVQ-AISAADMVVVMDKGQV 807
H+V A AD V+V+ +G+V
Sbjct: 196 HDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 4e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 616 EEEQNV-VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 669
E+E +V LN VS + KG V++IG+ GSGKS+ I G G + G
Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74
Query: 670 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q P + T+ D++ FG E +K VD +L+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR----VDEALLAVNM 130
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMG 775
+ + + LSGGQ+ R+A+A + +I +LD+ S +D ++ R I + I
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI--HEIKE 188
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
+ L T + TH++ +++D ++VM G++
Sbjct: 189 KYQL--TVLSITHDLDEAASSDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
+LN +S L G + G G GKS+LL + + T G++ G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 670 ---IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
++Y Q P + T+ DN++F + DP + + L+ L I
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL-------- 131
Query: 722 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
K + LSGG++ R++L R + + +LD++ SA+D ++ I Q
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH-NVNEIIHRYVREQ 187
Query: 781 KTRIL-CTHNVQAISAADMVVVM 802
+L TH+ I+ AD V+ +
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL ++L + G +V + G GSGK++LL I G + GS+ G
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+I Y+ Q +L T R N+ P + + + ++ +G + Y
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 781
NLSGGQ+ R+A+ARA+ H + + D+ +A+D++ R ++ ++QK
Sbjct: 140 H---NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-------LMQKLAR 189
Query: 782 ----TRILCTHNVQAISAADMVVVMDKGQVK 808
T ++ TH+ + + AD +V M+ G++
Sbjct: 190 EQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
D++FT+ G + I G GAGK+++L L L G++ G I N
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------- 72
Query: 1298 VVPQSPFLFEG---SLRDNLDPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETFVKES 1350
L+ G ++ L ++L W + E + VGL
Sbjct: 73 --YHQALLYLGHQPGIKTELTAL---ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
S GQ++ + LAR L + + LDE +D + ++L +++ G+ ++T
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 4e-09
Identities = 63/236 (26%), Positives = 103/236 (43%), Gaps = 48/236 (20%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L ++ G + I+G +G+GKS+ L + L G I+V+G I VRD G+
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI--NLVRDKDGQ 78
Query: 1296 FAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWS---VLEKCHVKEEVEAVGL------- 1343
V ++ LR L H N +WS VLE ++ ++ +GL
Sbjct: 79 LKVADKNQL---RLLRTRLTMVFQHFN----LWSHMTVLENV-MEAPIQVLGLSKQEARE 130
Query: 1344 --ETFVKESGIS----------FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1387
++ + GI S GQ+Q + +ARAL +VL DE T+ +D +
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1388 TASILQNAISSECKGMTVIT----IAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439
I+Q ++ E K M V+T A +S+ ++ L G + E+G P+ L
Sbjct: 191 VLRIMQQ-LAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEEEGAPEQLF 240
|
Length = 257 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 4e-09
Identities = 61/245 (24%), Positives = 114/245 (46%), Gaps = 41/245 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1274
++ F V+ Y ALH+++ I G V ++G GAGK+++L L CG
Sbjct: 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL------CGDPR 56
Query: 1275 ---GQILVDGLNIINTPV-RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1329
G+I+ DG +I + + +R A+VP+ +F ++ +NL M
Sbjct: 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL---AMGGFFA----- 108
Query: 1330 EKCHVKEEVEAVG------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
E+ +E ++ V E ++ +G + S G++Q++ + RAL+ ++L LDE +
Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Query: 1384 VDAQTASILQNAISSECK-----GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1437
+ A I+ I + GMT+ + + L + D +L++GH+V +
Sbjct: 168 L----APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223
Query: 1438 LLQDE 1442
LL +E
Sbjct: 224 LLANE 228
|
Length = 237 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 20/206 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPIC- 1273
++ +N+ + Y L A+ ++ I +G +G GKS+IL N L L P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1274 -GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1324
G++ G N+ V ++R R +V Q P F S+ DN+ + + + D
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ L + + +EV+ +K+SG+S S GQ+Q +C+ARA+ +V+ +DE + +
Sbjct: 128 VERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
Query: 1385 DAQTASILQNAISSECKGMTVITIAH 1410
D + ++ + + T+I + H
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-09
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297
++ + G + +VG GAGKS++L + L P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1298 VVPQSPFLFEGSLRDNLDPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
+ Q F + F D + + E EA+GL+ + S
Sbjct: 74 LSQQQTPPF------AMPVFQYLTLHQPDKTRTEAVAS-ALNEVAEALGLDDKLGRSVNQ 126
Query: 1354 FSVGQRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTV 1405
S G+ Q + LA +L+ + ++L LDE ++D + L +S C +G+ V
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 1406 ITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1442
+ +H ++ L + D + +L G L+ G +L E
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
Length = 248 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 40/221 (18%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPICGGQILVDGLNIINTPVRDL 1292
L+D++ +E G + I+G +G+GK+++L+A+ GQIL +G +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK- 81
Query: 1293 RGRFAVVPQSPFLFEG-SLRDNLD-------PFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1344
A V Q L G ++R+ L P +D ++ K+ VE V L
Sbjct: 82 --CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----------KKRVEDVLLR 129
Query: 1345 ---------TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
VK GI S G+R+ + +A LL KVL LDE T+ +D+ TA L +
Sbjct: 130 DLALTRIGGNLVK--GI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 1396 ISSECK-GMTVITIAHRI-STVLNM-DEILILDHGHLVEQG 1433
+S + VI H+ S + + D IL+L G +V G
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P + E + V + Y L AL D++ I + +G +G GKS++L R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1274 GGQILVDGLNIINTPVRD-------LRGRFAVVPQSPFLFEGSLRDNL------DPFHMN 1320
G + L + + D LR + +V Q P F S+ +N+ + + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1321 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
D + L + + EEV+ +KE G + S GQ+Q +C+ARA+ VL +DE
Sbjct: 134 LDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRI 1412
+ +D + ++ + T+I + H +
Sbjct: 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 43/203 (21%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 682
++ VS + +G + ++GE G GKS+L ILG T G I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 683 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGVNLSGGQRARLAL 740
+ GK+ S E + L++ + + + Y E LSGGQR R+ +
Sbjct: 71 -----LFEGKDITKLSKEERRER-VLELLEKVGLPEEFLYRYPHE----LSGGQRQRIGI 120
Query: 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR----ILCTHN---VQAI 793
ARA+ + + D+ +SA+D V IL N + LQ+ + +H+ V+ I
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQIL-NLLKD---LQEELGLTYLFISHDLSVVRYI 176
Query: 794 SAADMVVVMDKGQVKWIGSSADL 816
S D + VM G++ IG + ++
Sbjct: 177 S--DRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
++ V+ + +G + +G G+GK++ + + + T G+ +G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 669 SIAYVPQ---VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
SI VPQ V L+G R+N+ + G+ Y + + L+ ++
Sbjct: 67 SIGIVPQYASVDEDLTG--RENLEMMGRLYG---LPKDEAEERAE---ELLELFELGEAA 118
Query: 725 EKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
++ V SGG R RL +A ++ H D+ LD+ + +D + R + + I T
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR-AIWDYIRALKEEGVTI 177
Query: 784 ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+L TH + +A D + ++D G++ G+ +L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 667
V+N VSL + G +V ++G G+GK++ I+G + G I A
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 668 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I Y+PQ I T+ DNI+ K+ E L A + I+
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-------H 131
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI--LSNAIMG 775
K +LSGG+R R+ +ARA+ +LD+ + VD + R I L + +G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 776 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 817
+L T HNV + + D ++ G+V GS ++
Sbjct: 192 --------VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ-VP 677
+L VSL L G + ++G G+GKS+LL + GE+ G + + Y+ Q P
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76
Query: 678 WILSGTIRDNIL--FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV------- 728
T+ D ++ FG+ + + E A D D L+ + G
Sbjct: 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 729 ----------------NLSGGQRARLALARAVYHGSDIYMLD 754
+LSGG R R+ALARA+ D+ +LD
Sbjct: 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
|
Length = 530 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-09
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-LGEM----MLTHGSIHASGSIAYVP 674
VL+ + L + G +VA+IG GSGK++LL I L E + G I + +
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 675 Q----------VPWILSG-------TIRDNILFG----KNYDPQSYSETLKACTLDVDIS 713
Q V ++ T+ +NI+ G K + + + V ++
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
G + +Y LSGGQ+ R+A+ARA+ ++ + D+ SA+D ++ +L N I
Sbjct: 136 ---GKETSYPRR----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTI 187
Query: 774 MGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 807
++T ++ TH + A AD + MD+G++
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 59/239 (24%), Positives = 105/239 (43%), Gaps = 37/239 (15%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----C 1273
IE N+ + Y + + ++ I ++G +G GKS++L RL +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1274 GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEG-SLRDN----------LDPFHMN 1320
G++ + G NI + V ++R +V Q P F ++ DN +
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1321 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
D+ W+ L+K + +EV+ + + + S GQRQ + +ARAL K+L +DE
Sbjct: 123 DERVEWA-LKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLVEQG 1433
TAN+D + ++ + K T++ + H R+S D + L G L+E G
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS-----DYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-09
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 55/231 (23%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ VSL + G + A++GE G+GKS+L+ + G G I G
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 670 ---IAYVPQ----VPWILSGTIRDNILFGK---------NYDPQSYSETLKACT---LDV 710
IA V Q VP + ++ +NI G+ + + LD+
Sbjct: 82 AAGIATVHQELSLVPNL---SVAENIFLGREPTRRFGLIDRK-AMRRRARELLARLGLDI 137
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
D +VG +LS QR + +ARA+ + + +LD+ +A+ + L
Sbjct: 138 DPDTLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-RLF 185
Query: 771 NAIMGPHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
+ I L+ I +H + + AD + V+ G + +G+ A
Sbjct: 186 DLI---RRLKAQGVAIIYISHRLDEVFEIADRITVLRDG--RVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 20/208 (9%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRGR 1295
D++F++ G +G+ G GAG++ ++ ALF P G + ++G + I P + +R
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 1296 FAVVPQS-------PFLFEGS--LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
A+VP+ P L G L F ++I + E + ++ + ++T
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK--MRIDAAAELQIIGSAIQRLKVKTA 395
Query: 1347 VKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAISSECKG 1402
I S G +Q LA+ LL + +VL LDE T VD I L N ++ E G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--G 453
Query: 1403 MTVITIAHRISTVLNM-DEILILDHGHL 1429
+ +I ++ ++ VL + D +L++ G L
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 7e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L+ +S L +GS VA++G GSGKS+L+ + + G+I +G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
++ V Q P + T+ ++ FG KN+ +SE +A + VG
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED-EAKEKALKWLKKVGLSEDL 138
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
I + LSGGQ R+A+A + + +I LD+ + +D + R + T
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE-GRKEMMQLFKDYQKAGHT 197
Query: 783 RILCTHNVQAISA-ADMVVVMDKGQV 807
IL THN+ ++ AD V+V++ G++
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 39/218 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 672
VL+ ++ + G VA+IG GSGKS++L ++ + G I G Y
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 673 VPQVPWILSGTIRDNI--LFGKNYDPQSYSETLKACTLD--VDISLMVGG---------- 718
VP L +R+ I +F QS++ LD + ++V G
Sbjct: 75 VPADEKHLR-QMRNKIGMVF------QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA 127
Query: 719 ----DMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
DM + +K LSGGQ+ R+A+ARA+ + + D+V SA+D ++ +L+
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 771 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 807
T +L TH + A AD V DKG++
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG----------S 669
+L VS G L A++G G+GKS+LLN++ G G + +G
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729
I YVPQ D+IL TL V +LM + +G
Sbjct: 84 IGYVPQ----------DDILHP---------------TLTVRETLMFAAKL-----RG-- 111
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LSGG+R R+++A + + LD+ S +D+ A ++S + +T I H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQ 170
Query: 790 VQA--ISAADMVVVMDKGQV 807
+ D ++++ +G+V
Sbjct: 171 PSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 22/209 (10%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
DIN I G V VG +G GKS++L + L I G + + + + P + RG
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-RG-VG 78
Query: 1298 VVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG----LETFVKE 1349
+V QS P L S+ +N M+ LK+ +K + + V V L +
Sbjct: 79 MVFQSYALYPHL---SVAEN-----MSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDR 129
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
+ S GQRQ + + R L+ V LDE +N+DA ++ IS K G T+I
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 1408 IAHRISTVLNM-DEILILDHGHLVEQGNP 1435
+ H + + D+I++LD G + + G P
Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVGKP 218
|
Length = 369 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASG 668
+EEQNV + V+ ++ E GSG+ S + G+++L I
Sbjct: 1244 GDEEQNVGMKNVNE-------FSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296
Query: 669 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ V Q P + + +I +NI FGK + + K +D I + +G G
Sbjct: 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+LSGGQ+ R+A+ARA+ I +LD+ S++D+ + I + KT I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 788 HNVQAISAADMVVVMD 803
H + +I +D +VV +
Sbjct: 1417 HRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-------------ASG 668
VL+ V L + +GSLV ++G G+GK++LL +I G + T G++ AS
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 669 SIAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+A VPQ + +R + G+ + + V+ ++ G +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSNAIMGPHMLQ 780
+LSGG+R R+ LARA+ + + +LD+ +++D ++ R ++ +
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG-------- 189
Query: 781 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
KT + H++ A D +V++ G+V+ G AD+
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M +I C Y ++E LN ++ P+ S +AVIG G+GKS+L G +
Sbjct: 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 660 THGSIHASGS-------------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLK 704
T GS+ G + V Q P I S T+ +I FG P + +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG----PINLGLDEE 112
Query: 705 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
V +L + G +LSGG++ R+A+A + + +LD+ + +D Q
Sbjct: 113 TVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172
Query: 765 ARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
+ ++ P T I TH + + AD + VMDKG++ G+ ++
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-08
Identities = 68/253 (26%), Positives = 114/253 (45%), Gaps = 39/253 (15%)
Query: 1216 QGLIEFQN--VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-- 1271
Q L+ +N V R + ++ ++D++ IE G + +VG +G+GKS ++ RL P
Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 1272 ---ICGGQILVDGLNIINTPVRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1324
G I G ++++ + LRG + A++ Q P + +L+P H + +
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLH-TLEKQ 114
Query: 1325 IWSVLEKCHVKEEVEAVGLETF--VKESGI------------SFSVGQRQLICLARALLK 1370
++ VL H EA E + GI S G+RQ + +A ALL
Sbjct: 115 LYEVLS-LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173
Query: 1371 SSKVLCLDECTANVDAQT-ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDH 1426
++L DE T +D A ILQ + E M ++ I H +S V + D + ++ +
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 1427 GHLVEQGNPQTLL 1439
G VEQ TL
Sbjct: 233 GRCVEQNRAATLF 245
|
Length = 529 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-08
Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 13/263 (4%)
Query: 1180 TETEKEMVSLERVLEYMDVPQE----ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1235
T E+ + E + E M+ P+ ++ P G+ +N+ ++PS A
Sbjct: 888 TREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGL-VPGVC-VKNLVKIFEPSGRPA 945
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
+ +N T +G GAGK++ L+ L L P G +LV G + I T + +R
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD-IETNLDAVRQS 1004
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE--VEAVGLETFVKESGIS 1353
+ PQ LF F+ + W E+ ++ E +E GL E
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S G ++ + +A A + +KV+ LDE T+ VD + + + + G T+I H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 1414 TV-LNMDEILILDHGHLVEQGNP 1435
L D I I+ G L G P
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGTP 1144
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-08
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 20/232 (8%)
Query: 1218 LIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
L+E +++ Y PS L I+ I G V IVG +G+GKS+++N L L
Sbjct: 4 LLELKDIRRSY-PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 1275 GQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1329
G V G ++ L R F F+F+ L +L + +++ L
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFG------FIFQRYHLLSHLTAAQNVEVPAVYAGL 116
Query: 1330 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
E+ + +GLE V+ S GQ+Q + +ARAL+ +V+ DE T +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1386 AQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1436
+ + + + +G TVI + H + ++ + G +V Q
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228
|
Length = 648 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVPW- 678
L VS +PKG V + G G+GKS+LL I GE T G I +G ++ + ++P+
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 679 -------------ILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ T+ +N+ GK P+ + LD +VG
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP--PREIRRRVSE-VLD-----LVG--- 126
Query: 721 AYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ I+
Sbjct: 127 --LKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183
Query: 777 HMLQKTRILCTHNVQAISAADM---VVVMDKGQV 807
+ L T ++ TH+++ + M V+ ++ G++
Sbjct: 184 NRLGTTVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 669
L VS +PKG +++G GSGKS++ ++G + G I +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 670 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSET---LKACTLDVDISLMVGGDMAYIG 724
I V Q P + ++ ++ FG Y E + VD+ +
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-------LERAD 137
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 783
+ LSGGQ+ R+A+A + + +LD+ S +D AR L + + ++
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-ARQNLLDLV---RKVKSEHN 193
Query: 784 ---ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
I TH++ AD V+VM+KG V G+ ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------------LGEMMLTHGSIHAS 667
V+L+ ++L + KG + A+IGE GSGKS+LLN I G+ S AS
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 668 ----GSIAYVPQ-VPWILSGTIRDNILFGKNYDPQSYSETLKA---CTLDVDISLMVGGD 719
+ Y+ Q I + T+ +N+ G Y S E + V ++L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL----- 126
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ +K LSGG++ R+ALARA+ + + D+ ++D + + ++ +L
Sbjct: 127 --KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVL-DLLL 178
Query: 780 Q-----KTRILCTHNVQAISAADMVV 800
+ KT I+ TH+ + AD V+
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 612 YCNNEE-EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 668
Y +NEE + + L+ V+L + KG + ++G GSGKS++ + ++ + G ++ G
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 669 ------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
V Q P I++ + +++ FG P++ + VD SL
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG----PENLGIPPEEIRERVDESL 129
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
G Y LSGGQ+ R+A+A + + + D+ + +D R ++ N I
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIK 188
Query: 775 GPHMLQK----TRILCTHNVQAISAADMVVVMDKGQVKWIGS 812
L K T IL TH ++ AD ++VMD G+V G+
Sbjct: 189 E---LNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 56/221 (25%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+LN +SL LP G + A+IG G GKS+LL + G++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKN-----------YDPQSYSETLKACTLDVDISLMV 716
+A +PQ G T+R+ + +G++ D ++ ++ ++
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN------- 129
Query: 717 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--QVARWILSNAI 773
+A ++ + +LSGGQR R LA + + + +LD+ + +D QV +
Sbjct: 130 --HLA---DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV-------EL 177
Query: 774 MGPHMLQ------KTRILCTHNV-QAISAADMVVVMDKGQV 807
M +++ KT + H++ QA D +VV+ G V
Sbjct: 178 MR--LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216
|
Length = 255 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG----------EMMLTHGSIHAS 667
Q+ L+ V L + G +VA++G GSGKS+LL + G + L ++
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 668 GSIA-----------YV-PQVPWILSGTIRDNILFG------------KNYDPQSYSETL 703
G +A Y+ Q + ++ +N+L G + + L
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 704 KACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
+A T VG M + + V+ LSGGQ+ R+A+ARA+ + + + D+ ++++D
Sbjct: 135 QALT-------RVG--MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 763 QVARWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSS 813
+ AR ++ T ++ H V A+ + +V + +G V + GSS
Sbjct: 186 ESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
Length = 262 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 43/227 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
Q V +N VSL + +G + ++G GSGKS+LL I + T G + G
Sbjct: 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKE 95
Query: 669 --------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
S A +P T+ +N+ FG +E + ++
Sbjct: 96 LRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALE--- 146
Query: 715 MVG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+VG Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + +
Sbjct: 147 LVGLEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI-RREMQD 201
Query: 772 AIMGPH-MLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
++ LQKT + TH++ +A+ D + +M G++ +G+ ++
Sbjct: 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 32/228 (14%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1289
L +N T++ G I+G G+GKS++ + + +T G+IL DG +I+
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT---EGEILFDGEDILELSPD 76
Query: 1290 -RDLRGRFAVVPQSPFLFEG-SLRDNL----------DPFHMNDDLKIWSVLEKCHVKEE 1337
R G F + Q P G + D L ++ E + EE
Sbjct: 77 ERARAGIF-LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
LE +V E FS G+++ + + LL K+ LDE + +D I+ I+
Sbjct: 136 F----LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 1398 S-ECKGMTVITIAH--RISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
+ +G V+ I H R+ + D++ +L G +V+ G+P+ + E
Sbjct: 189 ALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELE 236
|
Length = 251 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
VL+ +SL + KG + +G G+GK++ + ILG + G I G
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74
Query: 682 GTIRDNILFGKNYDPQSYSETLKA-CTL------DVDISLMVGGDMAYIGEKGVNLSGGQ 734
G + + F Y + E L+ L +D L V G +K S G
Sbjct: 75 GALIEAPGF---YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGM 131
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARW----ILSNAIMGPHMLQKTRILCTHNV 790
+ RL +A A+ D+ +LD+ + +D + ILS G +L + +L +
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL--SEI 189
Query: 791 QAISAADMVVVMDKGQVKW 809
Q + AD + +++KG++
Sbjct: 190 QKV--ADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-08
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 72/213 (33%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ Y L L DI+ TI G ++G+VGR GAGKS+ L +L I G
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKST----LLKL--IAGELEP 52
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+G + Q
Sbjct: 53 DEG-----IVTWGSTVKIGYFEQ------------------------------------- 70
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
S G++ + LA+ LL++ +L LDE T ++D ++ L+ A+
Sbjct: 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 1399 ECKGMTVITIAH-R--ISTVLNMDEILILDHGH 1428
G TVI ++H R + V +I+ L+ G
Sbjct: 116 Y-PG-TVILVSHDRYFLDQVAT--KIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I F++V+ Y AL + F + G + G +GAGKS++L + + G+I
Sbjct: 1 MIRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1278 LVDGLNII---NTPVRDLRGRFAVVPQSP-FLFEGSLRDNLD-PFHM----NDDLKIWSV 1328
G +I N V LR + ++ Q L + ++ DN+ P + DD++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--- 116
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1387
V ++ VGL K I S G++Q + +ARA++ VL DE T N+D A
Sbjct: 117 ----RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHLV 1430
+ IL+ G+TV+ H I + +L L GHL
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 39/230 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+ +NV++ + L D++ ++ G + ++G GAGKS+++ + L G I
Sbjct: 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQS-------PFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
R+ + R VPQ P LR L P +D I L+
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALK 106
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQT 1388
+ ++A K SG G+ Q + LARALL ++L LDE T VD Q
Sbjct: 107 RVQAGHLIDA----PMQKLSG-----GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1389 ASI-LQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQ 1436
A L + + E V+ ++H + V+ DE+L L+H H+ G P+
Sbjct: 158 ALYDLIDQLRREL-DCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPE 205
|
Length = 251 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-08
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ Q V Y + I+ + G + +VG +G GKS++L + L I G+I
Sbjct: 4 LKLQAVRKSYDGKTQV-IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 1279 VDGLNIINT--PV-RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
+ G ++N P RD+ A+V Q+ L+ S+R+N M LKI + K +
Sbjct: 63 IGG-RVVNELEPADRDI----AMVFQNYALYPHMSVREN-----MAYGLKIRGM-PKAEI 111
Query: 1335 KEEVEAV----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+E V LE + S GQRQ + + RA+++ V DE +N+DA
Sbjct: 112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 49/203 (24%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG-- 668
L +S+ + + S+VA IG G GKS+ L N ++ GE+ + +I+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 714
++ V Q P +I +N+ +G + Q ETLK L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILS 770
+ E LSGGQ+ RL +ARA+ + ++D+ SA+D A+V I
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI-- 189
Query: 771 NAIMGPHMLQK--TRILCTHNVQ 791
H L+K T ++ THN+Q
Sbjct: 190 ------HELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 4e-08
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 665
+Y +EQ L+ VS+ +P+ + A+IG G GKS+ L I L + G +
Sbjct: 48 FY---GDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102
Query: 666 ASGSIAY---------------VPQVPWILSGTIRDNILFG-------KNYDPQSYSETL 703
G Y V Q P +I DN+ +G + D + E+L
Sbjct: 103 FRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESL 161
Query: 704 KACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ L +V L G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 162 RRAALWDEVKDQL---------DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 762 AQVARWILSNAIMGPHMLQKTRILCTHNVQ 791
I ++ + T ++ THN+Q
Sbjct: 213 PVATSKI--EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1274
I+ ++++ Y S A+ I+ I I+G +G GKS+ + L R++ + G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1275 -GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G + G NI + + LR + +V Q P F S+ +N+ ++I + L +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1332 CHVKEEVEAV----GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ E VE+ L VK+ S + S GQ+Q +C+ARAL KVL +DE +
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1384 VDAQTASILQNAISSECKGMTVITIAHRI 1412
+D ++ I S +T+ + H +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 8/208 (3%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI---INTPVRDLRG 1294
+I+ T+ G I+G +G GK+++L + G+IL DG NI + + +R
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
Query: 1295 RFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
R +++ QS LF + ++ DN+ + + + ++ + L V ++EAVGL K
Sbjct: 85 RMSMLFQSGALFTDMNVFDNV-AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHR 1411
S G + LARA+ ++ DE D T +L IS + G+T + ++H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 1412 ISTVLNM-DEILILDHGHLVEQGNPQTL 1438
+ VL++ D I+ +V G+ Q L
Sbjct: 204 VPEVLSIADHAYIVADKKIVAHGSAQAL 231
|
Length = 269 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL----GEMMLTHGSIHAS-------- 667
LN SL K + VIG GSGKS+++ N ++ G+ ++ +I A+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 668 ---GSIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
I V Q P + TI +I FG ++ E K + +V Y
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLK---LVQLPEDY 143
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+ LSGGQ+ R+ALA + + +LD+ +D + + N + K
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKK 202
Query: 783 R-ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE 840
R I+ THN+ Q + AD V+VM +G+V IGS ++ +S E T + + +
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI--------FSNQELLTKIEIDPPK 254
Query: 841 M-RTNASSANKQILLQEKDVVSVSDDAQEIIEV 872
+ + NK I L K++ ++ + A+E+ +V
Sbjct: 255 LYQLMYKLKNKGIDLLNKNIRTIEEFAKELAKV 287
|
Length = 289 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M + ++ +C E + + + +S L G + + G G+GK++LL + G +
Sbjct: 1 MMLEAENLSC------ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP 54
Query: 660 THGSIHASGS-IAYVPQVP-----WI--LSG-----TIRDNILFGKNYDPQSYSETLKAC 706
G ++ G I V + ++ G T +N+ F + + + T+
Sbjct: 55 DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEA 114
Query: 707 TLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-V 764
V +A + + V LS GQ+ R+ALAR + +++LD+ +A+D + V
Sbjct: 115 LAQVG--------LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
Query: 765 ARWILSNAIMGPHMLQKTRILCT 787
A A+M H Q +L T
Sbjct: 167 ALL---TALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHAS 667
+ + V L +PK + A IG G GKS++L N ++ G++ +++A
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 668 G--------SIAYVPQVPWILSGTIRDNILFGK-------NYDPQSYSETLKACTL--DV 710
I V Q P +I DNI +G + D + +L+ L +V
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD-ELVERSLRQAALWDEV 141
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
L + G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D I
Sbjct: 142 KDKLK---------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-- 190
Query: 771 NAIMGPHMLQKTRILCTHNV-QAISAADM 798
+M Q T I+ THN+ QA +DM
Sbjct: 191 EELMHELKEQYTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 27/226 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLRG 1294
++D++FT+ G +G+ G GAG++ ++ L+ P G + +DG + +P L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1295 RFAVVPQSP----FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-------L 1343
+ + + S+++N+ + + L+ +E +AV +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKH---ADEQQAVSDFIRLFNI 384
Query: 1344 ETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSE 1399
+T E I S G +Q + +AR L+ KVL LDE T VD I Q N +E
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHL-----VEQGNPQTLL 1439
G+++I ++ + VL M D IL++ G + EQ + L+
Sbjct: 445 --GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQATQEKLM 488
|
Length = 501 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 63/260 (24%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 7 LEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1279 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1325
V+G I +D LR R +V Q F NL HM
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-F--------NLWS-HM------ 108
Query: 1326 WSVLE-------------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARAL 1368
+VLE K E E VG+ S GQ+Q + +ARAL
Sbjct: 109 -TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
Query: 1369 LKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVIT----IAHRISTVLNMDE 1420
+V+ DE T+ +D + ++Q ++ E + M V+T A +S+
Sbjct: 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQ-DLAEEGRTMVVVTHEMGFARDVSS-----H 221
Query: 1421 ILILDHGHLVEQGNPQTLLQ 1440
++ L G + E+G P+ +
Sbjct: 222 VIFLHQGKIEEEGPPEQVFG 241
|
Length = 256 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRG 1294
D++F++ G +GI G GAG++ ++ LF P G+I +DG + I P + +
Sbjct: 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMN----------DDLKIWSVL----EKCHVKEEVEA 1340
A+VP E RD + P M D S + E + E ++
Sbjct: 339 GIAMVP------EDRKRDGIVPV-MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR 391
Query: 1341 VGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAI 1396
+ ++T E I S G +Q LA+ LL + K+L LDE T +D I L N +
Sbjct: 392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 1397 SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
+ G+ +I I+ + VL + D +L++ G L
Sbjct: 452 VQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
++ ++ V+ +G A++G+ GSGKS+L+ +I + T G++
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 669 -------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGG 718
I V Q P + T+ I+FG KN+ + +K + + L
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVKNYAHRLLMDLGFSR 136
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
D+ + + +SGGQ ++A+ + DI +LD+ + +D Q R ++ +
Sbjct: 137 DV--MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-------L 187
Query: 779 LQ-------KTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
L+ KT IL +H++ ++ AD V+VM +G + S +L
Sbjct: 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-08
Identities = 60/247 (24%), Positives = 116/247 (46%), Gaps = 30/247 (12%)
Query: 1218 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+I+ +NV+ RY + A+ +++ ++ G GIVG +GAGK+++ + +
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 1275 GQILV---DGLNIINTPVRDLRGR----FAVVPQSPFLF-EGSLRDNL---------DPF 1317
G++ V D + P D RGR ++ Q L+ ++ DNL D
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398
Query: 1318 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+K L+ EE L+ + E S G+R + LA+ L+K +++ L
Sbjct: 399 AR---MKAVITLKMVGFDEEKAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVIL 451
Query: 1378 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
DE T +D T + ++I + E T I ++H + VL++ D ++ G +V+ G+
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511
Query: 1435 PQTLLQD 1441
P+ ++++
Sbjct: 512 PEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP-----Q 675
L + +G VA++G G+GKS+LLN I G + GS+ H + + P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 676 VPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734
+ S T+ NI G +P + L I+ +G + + LSGGQ
Sbjct: 79 ENNLFSHLTVAQNIGLG--LNPGLKLNAAQREKLH-AIARQMGIE-DLLARLPGQLSGGQ 134
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ-AI 793
R R+ALAR + I +LD+ SA+D + + +L+ Q T ++ +H+++ A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194
Query: 794 SAADMVVVMDKGQVKWIGSSADL 816
A +V+ G++ W G + +L
Sbjct: 195 RIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-08
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 615 NEEEQNVV-LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS- 669
+ V+ ++ SL + +G + ++G GSGKS+LL ++ G ++ GS+ GS
Sbjct: 31 LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV 90
Query: 670 -----------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTL 708
++ V Q +PW T+ +N+ FG +E K
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKR--- 144
Query: 709 DVDISL-MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
VD L +VG GE LSGG + R+ LARA + I ++D+ SA+D
Sbjct: 145 -VDEQLELVGLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------- 668
+ LP + A+ G GSGK+SL+N I G G I +G
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 669 -SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
I YV Q P T+R N+ +G ++ D ++L+ G +
Sbjct: 76 RRIGYVFQDARLFPHY---TVRGNLRYGMWKSMRAQ--------FDQLVALL--GIEHLL 122
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
LSGG++ R+A+ RA+ ++ ++D+ L+++D R IL L++ R
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-------YLERLR 175
Query: 784 -------ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815
+ +H++ + AD VVV++ G+VK G +
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG---EMMLTHGSIHASG---------- 668
+LN VSL + G ++A++G GSGK++LL++I G T G I +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 669 SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+AYV Q +L G T+R+ + + + + L D++L G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 765
G +SGG+R R+++A + + +LD+ S +D+ A
Sbjct: 142 KG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L+ VSL + KG + + G G+GK++LL + G + + G + +G
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 669 --SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 720
I V Q +L T+ +N+ GK + + A L VG
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGK--KEREIQRRVGA-ALR-----QVG--- 126
Query: 721 AYIGEKGVN----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ IL + +
Sbjct: 127 --LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRL 183
Query: 777 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 806
+ T I+ TH++ + A V+++D G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 45/206 (21%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--LGEMMLT---HGSIHASGSIAY 672
+ +L V+L +PK S+ A+IG G GKS+ + ++ + +++ G I+ G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 673 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL- 708
P Q P +I DN+ +G +++ + E+LKA L
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 709 -DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767
+V L D + +G LSGGQ+ RL +AR + ++ ++D+ SA+D ++
Sbjct: 134 DEVKDKL----DKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTT 183
Query: 768 ILSNAIMGPHMLQK--TRILCTHNVQ 791
+ + I H L++ T ++ THN+Q
Sbjct: 184 KIEDLI---HKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 48/209 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 672
+ + + K + A+IG GSGKS+ L S L M T +G I Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVTGQILYRGIDINRKEI 94
Query: 673 -----------VPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 711
V Q P + +I +NI F K + +LK L V
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
L + + LSGGQ+ RL +ARA+ DI ++D+ SA+D ++ L
Sbjct: 155 DDL---------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTMQLEE 204
Query: 772 AIMGPHMLQK--TRILCTHNV-QAISAAD 797
+ L+K T I+ THN+ QA A+D
Sbjct: 205 TMF---ELKKNYTIIIVTHNMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M++ + T + QN L++VS KG +V +G G+GKS+ + I G +
Sbjct: 1 MSIRVSSLTKLY-----GTQNA-LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP 54
Query: 660 THGSIHASG------------SIAYVPQ-VPWILSGTIRDNILF-GKNY--DPQSYSETL 703
GS+ G +I Y+P+ P L +R+ + F Y Q + +
Sbjct: 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV 114
Query: 704 KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
+ +++ + IG+ LS G R R+ LA+A+ H + +LD+ + +D
Sbjct: 115 EEM---IELVGLRPEQHKKIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-- 165
Query: 764 VARWILSNAIMGPHML------QKTRILCTHNVQAISA-ADMVVVMDKGQV 807
N ++ + KT IL TH +Q + A D V++++KG++
Sbjct: 166 ------PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 45/223 (20%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L++++ +++ G V ++GR+G GKS++ L L G + G P+ L
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-----EPLAKLNRA 82
Query: 1296 ------------F-----AVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEE 1337
F AV P+ ++R+ + P L L + E
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLAR--ASEM 134
Query: 1338 VEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ AV L K S GQ Q +CLARAL K+L LDE +N+D +LQ
Sbjct: 135 LRAVDLDDSVLDKRPP-QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189
Query: 1396 ISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVE 1431
+ K G + I H + V ++++D+G +VE
Sbjct: 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 59/245 (24%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 669
+ ++ VS L KG ++ ++GE GSGKS L +I+G + + I G
Sbjct: 13 TDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI-VGGEILFDG 71
Query: 670 ------------------IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLK 704
IA + Q P + I + + + ++ +
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE-R 130
Query: 705 ACTLDVDISLMVGGDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSA 759
A +++ +VG E+ + LSGG R R+ +A A+ + + D+ +A
Sbjct: 131 A----IELLELVGIPDP---ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 760 VDAQVARWILSNAIMGPHMLQKTR-------ILCTHNVQAIS-AADMVVVMDKGQVKWIG 811
+D V IL +L++ + IL TH++ ++ AD V VM G++ G
Sbjct: 184 LDVTVQAQILD-------LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 812 SSADL 816
++
Sbjct: 237 PVEEI 241
|
Length = 316 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 788
LSGGQR R+A+ R + +++LD+ LS +DA + R + I H L +T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTH 192
Query: 789 N-VQAISAADMVVVMDKGQVKWIGSSADL 816
+ V+A++ AD +VV+D G+V +G +L
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTP--ICGGQILVDGLNIINTPVRDL 1292
L +++ + G + ++G +GAGK++++NAL FR G +L++G+ I +++
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEM 97
Query: 1293 RGRFAVVPQSPFLFEGSL--RDNL---DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL--- 1343
R A V Q LF +L R++L M + + EK V E ++A+GL
Sbjct: 98 RAISAYVQQDD-LFIPTLTVREHLMFQAHLRMPRRV---TKKEKRERVDEVLQALGLRKC 153
Query: 1344 -ETFVKESGI--SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
T + G S G+R+ + A LL +L DE T+ +D+ A + +
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 1401 -KGMTVITIAHRISTVL--NMDEILILDHGHLVEQGNPQTLLQ 1440
KG T+I H+ S+ L D+I+++ G + G+P +
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 39/199 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV----DGLNIINTPVR- 1290
L +++ ++ G V + G +G+GKS++L +L+ GQILV + ++++ R
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 1291 --DLRGR--------FAVVPQ--------SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
++R V+P+ P L G R+ K +L +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVA-------RAKAADLLTRL 139
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
++ E + ++ TF SG G++Q + +AR + +L LDE TA++DA +++
Sbjct: 140 NLPERLWSLAPATF---SG-----GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1393 QNAIS-SECKGMTVITIAH 1410
I ++ +G ++ I H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-07
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L ++N I+ G V +VG++GAGK+++L + G + + P +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS- 456
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS- 1353
A++P G + + L S + E+ + +G+S
Sbjct: 457 --ALIP-------GEYEPEFGEVTILEHL--RSKTGDLNAAVEI--------LNRAGLSD 497
Query: 1354 ----------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--K 1401
S GQ++ LA+ L + VL +DE A++D TA + IS
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 1402 GMTVITIAHR--ISTVLNMDEILILDHG 1427
G+T+I + HR + L D ++++ +G
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYG 585
|
Length = 593 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 48/233 (20%)
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------------ 1284
++ I G I+G G GKS++L L RL G + +DG +I
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 1285 ------INTP----VRDL--RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
TP V++L RGR+ P P W ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRY---PHQPLFTR------------------WRKEDEE 122
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
V + ++A G+ +S + S GQRQ +A L + + ++ LDE T +D L
Sbjct: 123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
Query: 1393 QNAIS--SECKGMTVITIAHRISTVLNMDEILI-LDHGHLVEQGNPQTLLQDE 1442
+S + KG T+ + H ++ LI L G +V QG P+ ++ E
Sbjct: 183 LELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAE 235
|
Length = 265 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 112/549 (20%), Positives = 199/549 (36%), Gaps = 75/549 (13%)
Query: 281 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLS 340
GLL +N ++ L L +FL G L + ++ ++ + + + +
Sbjct: 31 GLLAFINQALIETADTSLLVLPEFL----GLL--LLFMVSSLISQLGLTTLGQHFIY--- 81
Query: 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW--SL 398
KLRS + +K L L + ++ D R ++ A S ++
Sbjct: 82 ----KLRSEFI----KKILDTPLERIERLGSARLLAGLTSDV-RNISFAFSRLPELVQAI 132
Query: 399 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ----KDERIR 454
+G A YL Y K +T++ I V W ++ K M +D+
Sbjct: 133 ILTLGSAAYLAYLSPKM-----FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187
Query: 455 RTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 512
IL + L + E + ++ L + E +H R W + L
Sbjct: 188 DYQTILEGRKELTLNRERAEYVHNN-LYIPDAQEYRHHIIRANTFHLLAVNW-SNIMLLG 245
Query: 513 LFTFGLFALMGHQL-----DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567
L GL + L + A + LF L +PL S ++ L+ A ++ ++ +
Sbjct: 246 LI--GLVFWLALSLGWASTNVAATIVLVLLF--LRTPLLSAVGILPTLLTAQVAFNKIAK 301
Query: 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 627
+ YK + + P + L +++ ++ ++ + ++
Sbjct: 302 L-ELAPYKADFPRPQAFPDW--KTLE----------LRNVRFAY-----QDNAFHVGPIN 343
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP---WILSGTI 684
L + +G LV +IG GSGKS+L + G G I G Q+ + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 685 RDNILF-----GKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738
D LF + PQ + L+ L SL G + + LS GQ+ RL
Sbjct: 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN-DGRFS-----NLKLSTGQKKRL 457
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADM 798
AL A+ DI +LD+ + D R + KT +H+ AD
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 799 VVVMDKGQV 807
++ M GQ+
Sbjct: 518 LLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHASG-- 668
L+ +SL + + A+IG G GKS+ L + GE++L +I+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVDI 712
+ V Q P +I +N+ +G K Y + +L+ L +V
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 713 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772
L E + LSGGQ+ RL +ARA+ ++ ++D+ SA+D +A +
Sbjct: 142 RL---------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEEL 191
Query: 773 IMGPHMLQK--TRILCTHNVQ 791
I H L+ T I+ THN+Q
Sbjct: 192 I---HELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
+ L+ +S + KG + ++G G+GK++ + ILG ++ G + G
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71
Query: 670 IAYVPQVPWILSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
I Y+P+ G + D ++ Y Q + +D L Y
Sbjct: 72 IGYLPEE----RGLYPKMKVIDQLV----YLAQLKGLKKEEARRRIDEWLERLELSEYAN 123
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
++ LS G + ++ AV H ++ +LD+ S +D V +L + I KT I
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVI 182
Query: 785 LCTHNVQAISA-ADMVVVMDKGQV 807
L TH ++ + D V++++KG+
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
V +N SL + +G + ++G GSGKS+L+ + + T G I G
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 669 -----SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I+ V Q +P T+ +N+ FG +E + +++ + G
Sbjct: 102 ELRRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
Y E LSGG + R+ LARA+ + DI ++D+ SA+D + + + L
Sbjct: 159 DKYPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 780 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGS 812
+KT + TH++ A+ D + +M G++ +G+
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ VL VSL + KG +VA++G GSGKS+LL+ + G T G + +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74
Query: 669 ---------SIAYVPQVPWILSG-TIRDNI---LFGKNYDPQSYSETLKACTLDVDISLM 715
+ ++ Q +L T +N+ L + E V +
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-- 132
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
I + LSGG+R R+A+ARA+ + + + D+ +D A+ I + ++
Sbjct: 133 -----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLE 186
Query: 776 PHMLQKTR-ILCTHNVQAISAADMVVVMDKGQVK 808
+ T ++ TH+++ D V+ M GQ+
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 36/187 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---- 1291
++FT+ G + + G G+GK+++L + L P G I +DG +I + V +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVK 1348
L R A+ P L ++ +NL+ F W+ E+ + +EAVGL
Sbjct: 78 LGHRNAM---KPAL---TVAENLE-F--------WAAFLGGEELDIAAALEAVGL----- 117
Query: 1349 ESGIS------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1401
+ ++ S GQ++ + LAR L+ + + LDE TA +DA ++ I +
Sbjct: 118 -APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1402 -GMTVIT 1407
G+ +
Sbjct: 177 GGIVIAA 183
|
Length = 207 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 57/238 (23%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 665
+Y +N V+ V L +P+ + A++G G GKS+LL + L E G +
Sbjct: 13 YYGSNH-----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 666 ASGSIAYVPQVPWILSG----------------TIRDNILFGKNYD---------PQSYS 700
G Y P V I TI DN+ G + +
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 701 ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 760
LK L ++ + + NLSGGQR RL +ARA+ I ++D+ + +
Sbjct: 128 WALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 761 D----AQVARWILSNAIMGPHMLQK--TRILCTHN-VQAISAADMVVVMDKGQVKWIG 811
D A++ + L+K T +L TH+ QA +D V + G++ +G
Sbjct: 181 DPVGTAKIEELLFE--------LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 66/241 (27%), Positives = 101/241 (41%), Gaps = 54/241 (22%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L + IE +V +VGR GAGKS+++ L G +L DG I + R
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVAR-- 70
Query: 1296 FAVVPQSP----------FLFEG--SLRDNLDPFH--------------MNDDLKIWSVL 1329
+ Q P F+ EG + L +H +N+ K+ L
Sbjct: 71 ---LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 1330 EKCH---------VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+ H + E + +GL+ S S S G + L RAL+ + VL LDE
Sbjct: 128 D--HHNLWQLENRINEVLAQLGLDPDAALS--SLSGGWLRKAALGRALVSNPDVLLLDEP 183
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE-QGNPQTL 1438
T ++D +T L+ + + +G ++I I+H S + NM I+ LD G LV GN
Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQY 241
Query: 1439 L 1439
L
Sbjct: 242 L 242
|
Length = 635 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-------DGLNIINT 1287
L +++ T+ G V + G +GAGKS++L +L+ G+ILV D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1288 PVRDLRGR--------FAVVPQSPFL--FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
V ++R + V+P+ L L + P + +L + ++ E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP-REAARARARELLARLNIPER 141
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
+ + TF SG G++Q + +AR + +L LDE TA++DA ++ I+
Sbjct: 142 LWHLPPATF---SG-----GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 1398 S-ECKGMTVITIAH 1410
+ +G +I I H
Sbjct: 194 EAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
+ VS + +G + ++G G+GK++ + + + T G +G
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 669 --SIAYVPQ---VPWILSGTIRDNI-LFGKNYD------PQSYSETLKACTLDVDISLMV 716
I V Q V L+G +N+ + + Y + E L L
Sbjct: 72 RRRIGIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGL-------- 121
Query: 717 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---WILSNA 772
+ A ++ V SGG R RL +AR++ H ++ LD+ +D Q R W
Sbjct: 122 -LEAA---DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ-TRAHVWEYIEK 176
Query: 773 IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+ + T +L TH + +A D V ++D G++ G+ +L
Sbjct: 177 LKEEFGM--TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296
+I+ + G +G+ G GAG++ + L+ L P GG+I+++G I L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 1297 AVVP---QSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1352
+P QS L+ + L N+ N W +K E LE + + I
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHN-RRGFW-------IKPARENAVLERYRRALNI 392
Query: 1353 SF----------SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECK 1401
F S G +Q + +A+ L S ++L +DE T VD + I Q S +
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 1402 GMTVITIAHRISTVLNM-DEILILDHGHL 1429
+ V+ I+ + + M D +L++ G +
Sbjct: 453 NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1250 GIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPVR--DLRGRFAVVPQS 1302
I+G +G GKS+ L L R+ + G++ NI V LR + ++V
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 1303 PFLFEGSLRDNL---------DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
P LF S+ DN+ P DD+ + S L+ + +E++ + +S +
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDI-VESALKDADLWDEIK-----HKIHKSALD 150
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHR 1411
S GQ+Q +C+ARAL KVL +DE +D + +++ I S +T++ ++H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1412 ISTVLNMDEILILDHGH 1428
+ V + + G+
Sbjct: 211 LHQVSRLSDFTAFFKGN 227
|
Length = 261 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 32/251 (12%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL---FRLTPI 1272
Q L+ + MR+ L A++++N + V ++G GAGK+++ N L ++ T
Sbjct: 3 QPLLSVSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-- 58
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVP--QSPFLF-EGSLRDNL---DPFHMNDDLKIW 1326
GG IL+ G +I P + R VV Q LF E ++ +NL + L +
Sbjct: 59 -GGTILLRGQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGL--F 114
Query: 1327 SVLEK--CHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374
S L K + E EA VGL + + GQ++ + +AR ++ ++
Sbjct: 115 SGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
Query: 1375 LCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1431
L LDE A ++ + L I+ +TV+ I H + V+ + D I +++ G +
Sbjct: 175 LMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234
Query: 1432 QGNPQTLLQDE 1442
G P+ + +
Sbjct: 235 NGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 4e-07
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 42/167 (25%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFG 691
G ++ ++G GSGK++L ++ E+ G + + G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------YIDGE-------- 39
Query: 692 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
D+ ++ + +G K + SG R RLALA A D+
Sbjct: 40 -----------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 752 MLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCTHNVQAIS 794
+LD++ S +DA+ +L + +L K ++ T N +
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEM 657
I+Q + S Y N ++ LN VSL + A+IG GSGKS+LL SI L
Sbjct: 5 ILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 658 MLTHGSIHASGSIAYVP---------------QVPWILSGTIRDNILFGKNYDPQSYSET 702
+ GSI +G Y P Q P +I +N+++G +
Sbjct: 61 VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 703 LKACTLDVDISLMVGGDM-----AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 757
L V+ SL G + + + + LSGGQ+ R+ +AR + I +LD+
Sbjct: 121 LDEA---VEKSL-KGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 758 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
SA+D A I + T +L T ++Q S
Sbjct: 177 SALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVP 677
L+ +++ + G V ++G G+GKS+LL I E + T G+I +G ++ + +P
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 678 W--------------ILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ + + +N+ F P+ + + A V +S
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS---HKHR 131
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
A E LSGG++ R+A+ARA+ + I + D+ +D I+ N + +
Sbjct: 132 ALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAG 186
Query: 781 KTRILCTHN 789
T ++ TH
Sbjct: 187 TTVVVATHA 195
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-07
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L V+L + GS A IG GSGKS+++ + G + T GS+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYS-ETLKACTLDVDISLMVGGDMAY 722
+ V Q P + T+ ++ FG PQ++ +A L + +VG +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFG----PQNFGVSQEEAEALAREKLALVGISESL 138
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+ LSGGQ R+A+A + I +LD+ + +D + R L H T
Sbjct: 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK-GRKELMTLFKKLHQSGMT 197
Query: 783 RILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
+L TH + ++ AD V V++KG++ G D+
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
+ + L +S + KG +V IG G+GK++ L + G + T G + +G V
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV 84
Query: 674 P-------------------QVPWILSGTIRDNILFGK---NYDPQSYSETLKACTLDVD 711
P Q+ W L + D+ + P + + L + +D
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLP--VIDSFYLLAAIYDLPPARFKKRLDELSELLD 142
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+ ++ + LS GQR R +A A+ H +I LD+ +D VA+ + N
Sbjct: 143 L-----EELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV-VAQENIRN 194
Query: 772 AIMGPHMLQKTR----ILCTHNVQAISA-ADMVVVMDKGQV 807
+ + R +L +H ++ I A A V+V+DKG++
Sbjct: 195 FL---KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG 668
+ L V L +P ++A IG G GKS+LL + G ++ +I+ S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 669 --------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ V Q P +I +NI F + Y L D + ++
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN--GYKGNLDELVEDSLRRAAIWEEV 151
Query: 721 A-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ EKG LSGGQ+ RL +ARA+ D+ ++D+ SA+D R + +
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-- 209
Query: 780 QKTRILCTHNVQAIS 794
Q T I+ THN+Q S
Sbjct: 210 QYTIIMVTHNMQQAS 224
|
Length = 274 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 35/187 (18%)
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
++FT+ G V I G GAGK+S+L L L G++L G P+R R +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-----EPIRRQRDEY 72
Query: 1297 AVVPQSPFLFEGSL---RDNLDPF----------HMNDDLKIWSVLEKCHVKEEVEAVGL 1343
L+ G + L DD +W L + VGL
Sbjct: 73 H----QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---------VGL 119
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAISSECK- 1401
F S GQ++ + LAR L + + LDE TA +D Q + L+ ++ +
Sbjct: 120 AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA-IDKQGVARLEALLAQHAEQ 178
Query: 1402 -GMTVIT 1407
GM ++T
Sbjct: 179 GGMVILT 185
|
Length = 204 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY +L ++L + K + A IG G GKS+ L + GE+
Sbjct: 14 WY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68
Query: 659 LTHGSIHA--------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 709
+ +++ + V Q P +I DN+ +G P+ + LD
Sbjct: 69 IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG----PKLHGLAKNKKKLDE 124
Query: 710 -VDISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
V+ SL G +G++ LSGGQ+ RL +ARA+ + ++D+ SA+D V
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-V 183
Query: 765 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
A ++ N I L+K T I+ TH++ QA +D V G++ ++ ++
Sbjct: 184 ATNVIENLI---QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 1e-06
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------S 669
SL + +G + ++G GSGKS+++ + + T G + G
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 670 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
IA V Q ++ T+ DN FG + E + LD +L G Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK-ALD---ALRQVGLENYAHSYPD 163
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGG R R+ LARA+ DI ++D+ SA+D + + + Q+T + +H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 789 NV-QAISAADMVVVMDKGQVKWIGSSADL 816
++ +A+ D + +M G+V +G+ ++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 40/197 (20%)
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGS--------------- 669
+ K + IG G GKS++L S+ L + G +H G
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 670 IAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTL--DVDISLMVGGDMA 721
I V Q P S +I DN+ FG K L+ L +V L V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV----- 145
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
G++LSGGQ+ RL +ARA+ ++ +LD+ SA+D R + +M
Sbjct: 146 ----SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV--EELMVELKKDY 199
Query: 782 TRILCTHNV-QAISAAD 797
T L THN+ QAI AD
Sbjct: 200 TIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 19/226 (8%)
Query: 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRD 1291
P I+F++ G VG+ G GAG+S ++ L+ T GQ+ +DG I I +P
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1292 LRGRFAVVPQSPFLFEG-----SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVG 1342
+R + P+ EG S+ DN++ H+ I + E + + ++
Sbjct: 326 IRAGIMLCPEDR-KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN 384
Query: 1343 LETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
++T +E I S G +Q L R L + KV+ LDE T +D + N I
Sbjct: 385 IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 1402 -GMTVITIAHRISTVLNM-DEILILDHGHLV-----EQGNPQTLLQ 1440
G+ V+ ++ + VL + D I+++ G + EQ + L
Sbjct: 445 QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQALS 490
|
Length = 501 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 79/239 (33%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------I 670
V+ + L + G + ++G G GKS+LL + G +T G I G I
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78
Query: 671 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLK----------------ACTLDV 710
A V Q P + ++R+N+ +G LK A L++
Sbjct: 79 AMVFQNYALYPHM---SVRENMAYG-----------LKIRGMPKAEIEERVAEAARILEL 124
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWI 768
+ + K LSGGQR R+A+ RA+ +++ D+ LS +DA+ V
Sbjct: 125 E---------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV---- 171
Query: 769 LSNAIMGPHM------LQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
M L + T + TH+ V+A++ AD VVVM+ G + IG+ ++
Sbjct: 172 --------QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 49/236 (20%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG--GQILVDG--LNIINTPVRD- 1291
D++F + G +GIVG +G+GKS++L L RL P G I+ G L + +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 1292 ---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF-- 1346
+R + V Q+P RD L M V ++ E + A+G +
Sbjct: 81 RRLMRTEWGFVHQNP-------RDGL---RMR-------VSAGANIGERLMAIGARHYGN 123
Query: 1347 --------VKESGI----------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
++E I +FS G +Q + +AR L+ +++ +DE T +D
Sbjct: 124 IRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183
Query: 1389 ASILQNAISSECK--GMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQD 1441
+ L + + + G+ VI + H + L +L++ G +VE G +L D
Sbjct: 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDD 239
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 58/258 (22%), Positives = 106/258 (41%), Gaps = 51/258 (19%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1274
+ L+ ++ Y P D++F + G +GIVG +G+GK+++L + RLTP G
Sbjct: 4 KPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 1275 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
D + R L R + V Q+P RD L
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP-------RDGLRM---------- 104
Query: 1327 SVLEKCHVKEEVEAVG--------------LE------TFVKESGISFSVGQRQLICLAR 1366
V ++ E + A+G LE + + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164
Query: 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTV-LNMDEILI 1423
L+ +++ +DE T +D + L + + + G+ V+ + H ++ L D +++
Sbjct: 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMV 224
Query: 1424 LDHGHLVEQGNPQTLLQD 1441
+ G +VE G +L D
Sbjct: 225 MKQGQVVESGLTDRVLDD 242
|
Length = 258 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 62/225 (27%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
V + VSL + KG + A++GE G+GKS+L+ + G G I G
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77
Query: 670 ---IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISL 714
I V Q VP + T+ +NI+ G E K +D ++S
Sbjct: 78 RLGIGMVHQHFMLVP---TLTVAENIILG--------LEPSKGGLIDRRQARARIKELSE 126
Query: 715 MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD---VLSAVDAQVARW- 767
G + A + + LS G++ R+ + +A+Y G+ + +LD+ VL+ +
Sbjct: 127 RYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLT--PQEADELF 180
Query: 768 -ILSNAI-MGPHMLQKTRILCTH---NVQAISAADMVVVMDKGQV 807
IL G KT I TH V AI AD V V+ +G+V
Sbjct: 181 EILRRLAAEG-----KTIIFITHKLKEVMAI--ADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLR 1293
A+ D++F + G VGI G G G+S ++ A+ L G+IL++G +++ R+ R
Sbjct: 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332
Query: 1294 GR-FAVVPQSPF----LFEGSLRDNL-------DPFHMNDDLKIWSVLEKCHVKE----- 1336
A VP+ + + SL +NL PF L + K +E
Sbjct: 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD-RRAIRK-FARELIEEF 390
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+V A + + S S G +Q + LAR L + +L + T +D + +
Sbjct: 391 DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 1397 SSECKGMTVITIAHRISTVLNMDEILIL 1424
+ + IS L DEIL L
Sbjct: 447 LELRDAGKAVLL---ISEDL--DEILEL 469
|
Length = 501 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
+L+ VSL L G +VA++G G+GKS+LL ++ GE+ G +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
VL ++ +G ++A++G G+GKS+LL + G + G++ G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 670 ---IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+ V Q P + + + ++ FG P + + V +L G
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFG----PLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
LSGG++ R+A+A AV D+ +LD+ + +D +L+ + T +
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA-ILRRLRAEGMTVV 181
Query: 785 LCTHNV 790
+ TH+V
Sbjct: 182 ISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL VSL + +G V ++G G GKS+L +LG G++ G
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 669 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
S + V P+ V I+ +R ++ +E L L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED-- 143
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
+ LSGGQ R+ +ARA+ + +LD+ +S +D + IL
Sbjct: 144 --------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE---- 191
Query: 775 GPHMLQKTR-------ILCTHNVQAI-SAADMVVVMDKGQV 807
+L+K + + TH+++ + S V VMDKGQ+
Sbjct: 192 ---LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 2e-06
Identities = 61/231 (26%), Positives = 102/231 (44%), Gaps = 38/231 (16%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL-------NIIN 1286
AA+ +++F+++ G + IVG +G+GKS AL RL GG + D + +I
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 1287 ------TPVRDLRGR-FAVVPQSPFLFEGSLRDNLDP-FHMNDDL-----------KIWS 1327
+R +RG A++ Q P +L+P F + + + + +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
++E + ++V +T + S G RQ + +A AL VL DE T +D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1388 -TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
A ILQ + E M VI I H + V + D +L++ G VE G+
Sbjct: 203 IQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 43/156 (27%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQVPW 678
++++ +S LP G +V VIG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ--- 392
Query: 679 ILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG----- 724
RD + DP + S L DI + +G ++ AY+G
Sbjct: 393 -----SRDAL------DPNKTVWEEISGGL-------DI-IQLGKREVPSRAYVGRFNFK 433
Query: 725 ----EKGV-NLSGGQRARLALARAVYHGSDIYMLDD 755
+K V LSGG+R R+ LA+ + G ++ +LD+
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
E + LN +S +P+G +V +IG GSGKS+L N I G M G++ GS A +
Sbjct: 35 EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA--- 91
Query: 678 WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----LS 731
I SG + L G +N + + L + I ++ + A IG K + S
Sbjct: 92 -ISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEII--EFADIG-KFIYQPVKTYS 145
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVD 761
G ++RL A +V+ DI ++D+ LS D
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 40/209 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDL 1292
L D + ++ G V ++GR G+G S++L AL T G I +G+
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-------- 74
Query: 1293 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL---ETFVKE 1349
FA ++ +D+ ++ V+E ++ FV+
Sbjct: 75 -KEFAEKYPGEIIYVSE-----------EDVHFPTLT----VRETLDFALRCKGNEFVR- 117
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTV 1405
GIS G+R+ + +A AL+ + VLC D T +D+ TA ++ ++ K T
Sbjct: 118 -GIS--GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT-MADVLKTTTF 173
Query: 1406 ITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+++ + ++ D++L+L G + G
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 59/247 (23%), Positives = 94/247 (38%), Gaps = 53/247 (21%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG----------GQILVDGLN 1283
A L D++ IE G ++GR GAGKS++L AL + G G + ++G
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 1284 IINTPVRDLRGRFAVVPQSP---FLFEGSLRD--NLDPF----------HMNDDLKIWSV 1328
+ L AV+PQ+ F F S R+ L + H + ++ W
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAF--SAREIVLLGRYPHARRAGALTHRDGEI-AWQA 129
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---------SSKVLCLDE 1379
L G V + S G+ + AR L + + L LDE
Sbjct: 130 LAL---------AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 1380 CTANVD-AQTASILQN--AISSECKGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNP 1435
TA +D A +L ++ + + V+ I H + + D I +L G +V G P
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239
Query: 1436 QTLLQDE 1442
+L
Sbjct: 240 ADVLTPA 246
|
Length = 272 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ-VPWILSGTIRD--- 686
+ ++ ++G G GK++ + + G + G I +++Y PQ + GT+RD
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 687 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVY 745
+I P +E K ++ ++ ++ V LSGG+ R+A+A +
Sbjct: 84 SITKDFYTHPYFKTEIAKPLQIE---QIL---------DREVPELSGGELQRVAIAACLS 131
Query: 746 HGSDIYMLDDVLSAVDAQ--------VARWILSNAIMGPHMLQKTRILCTHNVQAIS-AA 796
+DIY+LD+ + +D + + R+ +N +KT + H++ I A
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--------EKTAFVVEHDIIMIDYLA 183
Query: 797 DMVVVMD 803
D ++V +
Sbjct: 184 DRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------------ASG 668
VV+N +S + +G ++G G+GKS++ +LG + G I A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77
Query: 669 SIAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+I VPQ + T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFG-------MSTREIEAVIPSLL--EFARLESK 128
Query: 727 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 187
Query: 783 RILCTHNV-QAISAADMVVVMDKG 805
+L TH + +A D + V++ G
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 40/173 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQ- 675
Q VL+ VSL L G ++ ++G G+GKS+L+ +LG + G I +G I YVPQ
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75
Query: 676 ------VPWILS-------GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+P ++ GT +++IL LK V ++ M
Sbjct: 76 LYLDTTLPLTVNRFLRLRPGTKKEDIL-----------PALKR----VQAGHLIDAPMQ- 119
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAI 773
LSGG+ R+ LARA+ + + +LD+ VD QVA + L + +
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 682
L S + G +V V+G GSG S+LL ++ T G++ G I Y
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIHY---------N 70
Query: 683 TIRDNILFGKNYDPQS-YS--ETLKACTLDV----DISLMVGGDMAYIGEKGVNLSGGQR 735
I F + Y + Y E + TL V D +L G+ ++ +G+ SGG+R
Sbjct: 71 GI-PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN-EFV--RGI--SGGER 124
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 795
R+++A A+ + + D+ +D+ A IL + +L T ++
Sbjct: 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC------IRTMADVLKTTTFVSLYQ 178
Query: 796 A--------DMVVVMDKGQV 807
A D V+V+ +G+
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 43/156 (27%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVPQVP 677
++++ +S LP G +V +IG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS- 395
Query: 678 WILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG---- 724
RD + DP + S L DI + VG ++ AY+G
Sbjct: 396 -------RDAL------DPNKTVWEEISGGL-------DI-IKVGNREIPSRAYVGRFNF 434
Query: 725 -----EKGV-NLSGGQRARLALARAVYHGSDIYMLD 754
+K V LSGG+R RL LA+ + G ++ +LD
Sbjct: 435 KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470
|
Length = 556 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 53/206 (25%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAYVPQV 676
L +S+ +PK + A IG G GKS+LL L + G I G Y +V
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 677 ---------------PWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 711
P +I +N+++G + ++ +L+ L +V
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 767
L E LSGGQ+ RL +ARA+ ++ +LD+ SA+D ++
Sbjct: 160 DRL---------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 768 I--LSNAIMGPHMLQKTRILCTHNVQ 791
I L + + T ++ THN+Q
Sbjct: 211 ITELKS--------KYTIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L++VSL + +G +V +IG G+GK++LL ++ G+ T G I G
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 669 -SIAYVPQVPWILSG-TIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
++A VP+ + S T+ +N+ G + + + E +K V + E
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK----------WVYELFPRLHE 129
Query: 726 KGVN----LSGGQRARLALARAVYHGSDIYMLDD 755
+ + +SGG++ LA+ RA+ + +LD+
Sbjct: 130 RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIA 671
+N L + + +P LV V G GSGKS+L+N L +ASG
Sbjct: 7 NVHN-------LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----------YASGKAR 49
Query: 672 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAY--IGEKGV 728
+ +S + +D + ++ + Y +G+K
Sbjct: 50 LIS--------------------FLPKFSRNK---LIFIDQLQFLIDVGLGYLTLGQKLS 86
Query: 729 NLSGGQRARLALARAVYHGSD--IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGG+ R+ LA ++ +++LD+ + + Q +L I G L T IL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145
Query: 787 THNVQAISAADMVVVMDKGQ 806
HN+ +S+AD ++ G
Sbjct: 146 EHNLDVLSSADWIIDFGPGS 165
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY E+Q L VS+ +PK S+ A+IG G GKS+ + I G++
Sbjct: 21 WY---GEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75
Query: 659 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
+ I+ ++ V Q P +I DN+ +G P+ + K V
Sbjct: 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG----PRIHGANKKDLDGVV 131
Query: 711 DISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
+ +L ++ ++LSGGQ+ RL +AR + I + D+ SA+D ++
Sbjct: 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-IST 190
Query: 767 WILSNAIMGPHMLQK--TRILCTHNVQ 791
+ + IM L+K T ++ THN+Q
Sbjct: 191 ARIEDLIMN---LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 6e-06
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASGS- 669
L VS+ +P+ S+ A+IG G GKS+ L I G + L I+ G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 670 -------IAYVPQVPWILSGTIRDNI-----------------LFGKNYDPQSYSETLKA 705
+ V Q P +IR+NI L G++ D + E ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD-DKDAEDELVER 179
Query: 706 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 765
+ V + + + LSGGQ+ RL +AR + ++ ++D+ SA+D +A
Sbjct: 180 SLRQAALWDEVNDRL---DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IA 235
Query: 766 RWILSNAIMGPHMLQK--TRILCTHNVQ 791
+ + I L + T ++ THN+Q
Sbjct: 236 TSKIEDLI---EELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
E + + + +S L G + V G GSGK++LL + G G + +G
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 669 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+ Y+ P I + ++ +N+ F + E ++ V +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALARVG--------LNG 117
Query: 723 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-VAR 766
++ V LS GQ+ R+ALAR + G +++LD+ +A+D VAR
Sbjct: 118 FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 52/202 (25%), Positives = 85/202 (42%), Gaps = 28/202 (13%)
Query: 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFE 1307
G+VG G GKS++ L L G +L G L+ + LR + A V Q P
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP---- 86
Query: 1308 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE---------VEAVGLETFVKESGISFSVGQ 1358
F+ + D I L V E + V + F + S GQ
Sbjct: 87 -----EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQ 141
Query: 1359 RQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRIST 1414
++ + +A AL+ ++ L LDE TA +D Q +I++ ++ +G VI +H I
Sbjct: 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDL 198
Query: 1415 VLNM-DEILILDHGHLVEQGNP 1435
+ + D + +L G ++ G P
Sbjct: 199 IYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 7e-06
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 54/218 (24%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ + L + D++F + G VG++G GAGKS+ LFR+ I G +
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKST----LFRM--ITGQEQP 374
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM--------NDDLKIWSVLE 1330
G I V + A V QS RD LDP D +++
Sbjct: 375 DSGTIKIGETV-----KLAYVDQS--------RDALDPNKTVWEEISGGLDIIQLGKR-- 419
Query: 1331 KCHVKEEVEA---VGLETFV-----KESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
EV + VG F K+ G S G+R + LA+ L VL LDE T
Sbjct: 420 ------EVPSRAYVGRFNFKGSDQQKKVG-QLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAH------RIST 1414
++D +T L+ A+ E G V+ I+H RI+T
Sbjct: 473 DLDVETLRALEEAL-LEFAGCAVV-ISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 26/246 (10%)
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P + ++E +N+T +PS+ D++F + G +GI G GA ++ I+ LF +
Sbjct: 246 PGEVILEVRNLTSLRQPSI----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 1274 GGQILVDGLNIIN-TPVRDLRGRFAVVPQ---SPFLFE------GSLRDNLD----PFHM 1319
G I + G I N + FA+V + S ++ SL N+ +
Sbjct: 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL 361
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLD 1378
D+ ++ K + ++++ ++T + I S S G +Q + + R LL ++L LD
Sbjct: 362 LDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 1379 ECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQ 1436
E T +D I Q K +I I+ + +L + D IL++ +G + + +
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476
Query: 1437 TLLQDE 1442
T Q+E
Sbjct: 477 TTTQNE 482
|
Length = 491 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-----KTRI 784
LSGGQ+ R+A+ARA+ + + D+ SA+D ++ +L M T +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMV 189
Query: 785 LCTHNVQ-AISAADMVVVMDKGQV 807
+ TH + A AD V+ MD G++
Sbjct: 190 VVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY E+Q LN ++L + + + A+IG G GKS+ L I GE++
Sbjct: 13 WY---GEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67
Query: 659 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSET 702
L +I+ + V Q P +I DN+ +G K +
Sbjct: 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWA 127
Query: 703 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
LK L ++ + + + LSGGQ+ RL +AR + D+ ++D+ SA+D
Sbjct: 128 LKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 763 QVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
I +M + T ++ THN+Q S
Sbjct: 181 ISTLKI--EDLMVELKKEYTIVIVTHNMQQAS 210
|
Length = 251 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657
+ + +++ + N ++ +L +S + G A++G G+GK++LL+ + GE
Sbjct: 28 NEPLIELKNVSVR--RNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81
Query: 658 MLTHGSI---------------------HASGSIAYVPQVPWILSGTIRDNILFGKNYDP 696
+ G + S + +V T+RD +L G +
Sbjct: 82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE----TVRDVVLSGF-FAS 136
Query: 697 QS-YSETLKACTLDVDISLM-VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754
Y E L A L L+ + G +LS G++ R+ +ARA+ ++ +LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 755 DVLSAVDAQVARWILSNAI-------MGPHMLQKTRILCTHNVQAISA 795
+ +D +AR L N + P +L TH+ + I
Sbjct: 197 EPAQGLDL-IAREQLLNRLEELAASPGAPALL-----FVTHHAEEIPP 238
|
Length = 257 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
+ VL ++L + G +VAV+G+ G+GK++LL ILG G Y P
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-------GRGEEKYRPDSGK 447
Query: 679 ILSGTIRDNILFGKNYDPQSYSET----LKACTLDVDISL----MVGGDMAYIGEKGVN- 729
+ + L Y+P+ T L++ T D++ ++ G A + + +
Sbjct: 448 VEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LS GQ+ R LA+ + ++ ++D+ + +D A + T I+ TH
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 790 VQAISA--ADMVVVMDKGQV 807
+ +A D ++++ G+V
Sbjct: 568 PEVGNALRPDTLILVGYGKV 587
|
Length = 593 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 49/277 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------IAY 672
++ +S +P G + ++G G+GK++ ILG + T G I +G I Y
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 673 VPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+P+ + T+ D + + K + L+A ++I +K
Sbjct: 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-------GKKTKKIK 129
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LS G + ++ AV H ++ +LD+ S +D V +L +AI T I +H
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSH 188
Query: 789 NVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 847
++ + D ++++ KGQ T L+ +++R S
Sbjct: 189 RMEHVEELCDRLLMLKKGQ-------------------------TVLYGTVEDIR--RSF 221
Query: 848 ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTV 884
K+++++ + + I+++ + K+G + +
Sbjct: 222 GKKRLVIESDLSLEELANIPGILKITETKDGSWRIQI 258
|
Length = 300 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 55/232 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------LGEMMLTHGSIHASGSIA 671
VL+ + L + +G +V +IG GSGKS+LL I G++++ + +
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV--DGLKVNDPKV 70
Query: 672 YV-----------------PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
P + T +N++FG P K L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHL------TALENVMFG----PLRVRGASKEEAEKQAREL 120
Query: 715 M--VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ----VA 765
+ VG + A Y E LSGGQ+ R+A+ARA+ + + D+ SA+D + V
Sbjct: 121 LAKVGLAERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176
Query: 766 RWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ + A G M ++ TH + A A ++ +DKG++ G L
Sbjct: 177 KVMQDLAEEGMTM-----VIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAY----- 672
L +++L + + + A+IG G GKS+ L ++ L + G + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 673 ----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 720
V Q P +I DN+ +G P+++ K LD V+ SL
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGIKDKK-KLDEIVEKSL----KG 129
Query: 721 AYIGEK--------GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 768
A + ++ + LSGGQ+ RL +ARA+ ++ ++D+ SA+D ++ I
Sbjct: 130 AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 769 LSNAIMGPHMLQK--TRILCTHNVQ 791
L+K T ++ THN+Q
Sbjct: 190 QE--------LKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL---------GEMMLTHGSIHASGS- 669
L ++L + K + A IG G GKS+LL N + GE++L +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 670 -------IAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLD--VDISLMVGGD 719
+ V Q P +I DNI FG + ++ S +E +D V+ +L
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE------MDERVEWALTKAAL 142
Query: 720 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ +K G +LSGGQ+ RL +AR + ++ +LD+ SA+D
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG- 668
VL +++ P+ + A+IG G GKS+LL N I+ G ++L + +I++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 669 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 719
+ V Q P +I DN+ FG P+ T ++ LD V+ SL
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFG----PRMLGTTAQS-RLDEVVEKSLRQAAL 133
Query: 720 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
+ + G+ LSGGQ+ RL +AR + ++ ++D+ SA+D I +M
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI--EELMQ 191
Query: 776 PHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
T + THN+ QA A+D + G + G + ++
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 30/228 (13%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L+DI+ I G V ++G +G+GK+++L + L G I G ++ RD +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMN--DDLKI-WSVLE----------KCHVKEEVEAVG 1342
F V Q LF HM D++ +VL K V + +E V
Sbjct: 78 F--VFQHYALFR----------HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISSE 1399
L S GQ+Q + LARAL ++L LDE +DAQ L+ + E
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDECSVF 1446
K T + + H + + D ++++ G++ + G P + ++ + F
Sbjct: 186 LK-FTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
|
Length = 353 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYV 673
+S +PKG +V +G G+GKS+ L + G ++ T G + +G SI V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 674 ----PQVPWILSGTIRDNILFGK---NYDPQSYSETLKACT--LDVDISLMVGGDMAYIG 724
Q+ W L D++ K ++E L T LD++ L
Sbjct: 103 MGQKLQLWWDLP--ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTR 783
LS GQR R LA A+ H + LD+ +D A+ + + + Q T
Sbjct: 153 -PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV-NAQANIREFLKEYNEERQATV 210
Query: 784 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
+L TH I+ D V+++D+GQ+ + G+ A L
Sbjct: 211 LLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------HASG 668
+V++ +S + +G ++G G+GK++ L +LG GSI HA
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
Query: 669 SIAYVPQV----PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+ VPQ P T+R+N+L Y S + ++ + + A +G
Sbjct: 81 RVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG 137
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
E LSGG + RL LARA+ + D+ +LD+ + +D Q AR ++ + KT +
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 785 LCTHNV-QAISAADMVVVMDKGQ 806
L TH + +A D + V+++G+
Sbjct: 193 LTTHFMEEAERLCDRLCVIEEGR 215
|
Length = 306 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 666
+N L ++L +P + A+IG G GKS+LL I G++ + I+
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 667 SGSIA-------YVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVD 711
+ +A V Q P +I +N+ +G K + +L+ L +
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+ + LSGGQ+ RL +AR + D+ ++D+ SA+D I
Sbjct: 135 VK-------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI--E 185
Query: 772 AIMGPHMLQKTRILCTHNVQ 791
+M T ++ TH++Q
Sbjct: 186 ELMEELKKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLR 1293
AL ++N + + ++G GAGKS++L LF + G IL G I + L
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 1294 GRFAVVPQSPFLF-EGSLRDNL------------DPFHMNDDLKIWSVLEKCHVKEEVEA 1340
++V Q L + S+ DN+ D M D K +
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----------TKAIFDE 121
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-E 1399
+ ++ + + SV Q Q+I +A+A ++K++ +DE T+++ + + L I +
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+G ++ I+H++ + + DEI IL G +
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPIC-GGQILVDGLNIINTPVRDLR 1293
L+ + G + ++G +G+GKS++LNAL R+ G IL + P + +
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQIL 139
Query: 1294 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGL----ETFV 1347
R V Q L+ ++R+ L + K + EK V E V + +GL T +
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTII 199
Query: 1348 KESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTV 1405
S I S G+R+ + +A +L + +L LDE T+ +DA A ++ S KG T+
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTI 259
Query: 1406 ITIAHRIST-VLNM-DEILILDHG 1427
+T H+ S+ V M D +L+L G
Sbjct: 260 VTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 45/216 (20%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMML--------THGSIH 665
L ++ KG +VA++G G+GKS+L N IL GE+++ +
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 666 ASGSIAYVPQVP--WILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMV 716
++ V Q P + + T+ +++ FG K + E LKA V
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA----------V 125
Query: 717 GGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
G M K + LSGGQ+ R+A+A + +I +LD+ S +D A I+
Sbjct: 126 G--MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL--- 180
Query: 776 PHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQV 807
+ L K T I+ TH+V + AD V VM G++
Sbjct: 181 -YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 3e-05
Identities = 59/236 (25%), Positives = 105/236 (44%), Gaps = 39/236 (16%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 665
WY N + VL+ ++L + + + A IG G GKS+ L ++ L E G I+
Sbjct: 89 WYMNRTKH---VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 666 ASGS---------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
G+ I V Q P +I DN+ +G + + + L+
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 711 DISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVA 765
S + ++ +K N LSGGQ+ RL +ARA+ ++ ++D+ SA+D A++
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265
Query: 766 RWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAV 818
IL L+K + I+ TH++ QA +D V +G ++ G + + +
Sbjct: 266 ELILE--------LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFI 313
|
Length = 329 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSILGEMMLTHGSIHASGSIAY 672
+ L + L + + A+IG G GKS+ L N ++ + +T G++ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT-GNVSLRGQNIY 75
Query: 673 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLD 709
P Q P +I +N+++G K ++ +LK +
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 710 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 769
++ ++ E ++LSGGQ+ R+ +AR + D+ +LD+ SA+D I
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP-----IS 183
Query: 770 SNAIMGPHML-----QKTRILCTHNVQAIS 794
S I +ML Q T IL TH++ S
Sbjct: 184 STQI--ENMLLELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP 674
++ +S L G + V G G GK++LL + G + G + A
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 675 QVPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ ++ L G + +N+ F ++ ++ +L G +
Sbjct: 74 NILYLGHLPGLKPELSALENLHF--------WAAIHGGAQRTIEDALAAVGLTGFEDLPA 125
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRIL 785
LS GQ+ RLALAR + +++LD+ +A+D L ++ H L + +L
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA--LLAGLLRAH-LARGGIVLL 182
Query: 786 CTH 788
TH
Sbjct: 183 TTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------IAYVPQ 675
+L Q+S LP G L+ + G G+GK++LL I G + G I Y Q
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 676 VPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+ ++ SG T+R+N L YD + L SL I
Sbjct: 76 LCFVGHRSGINPYLTLRENCL----YDIHFSPGAVGITELCRLFSL-----EHLIDYPCG 126
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
LS GQ+ ++AL R + +++LD+ L A+D I++
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
|
Length = 200 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 50/204 (24%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT------HGSIHASGSIAYVPQV 676
L V L +P+ ++ A IG G GKS+ L L M T G I G Y P++
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 677 ---------------PWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGG- 718
P +I +N+ +G P+ + LD V+ SL G
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYG----PRIHGLARSKAELDEIVETSLRKAGL 149
Query: 719 -----DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWIL 769
D + E G LSGGQ+ RL +ARA+ ++ ++D+ SA+D A+V I
Sbjct: 150 WEEVKDR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI- 206
Query: 770 SNAIMGPHMLQK--TRILCTHNVQ 791
L++ T ++ TH++Q
Sbjct: 207 -------DELRQNYTIVIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHA 666
+N + VS+ P+ S+ A+IG G GKS++L SI G+++L I+
Sbjct: 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 667 SGS--------IAYVPQVPWILSG-TIRDNILFGKNYD---PQSYS-ETLKACTLDVDIS 713
G + V Q P +I DN++ G + +S + E +++ V +
Sbjct: 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
V + + LSGGQ+ RL +AR + ++ ++D+ SA+D I +
Sbjct: 136 DEVKDRLK---SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI--EEL 190
Query: 774 MGPHMLQKTRILCTHNVQ 791
+ + T I+ THN+Q
Sbjct: 191 IEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 4e-05
Identities = 61/252 (24%), Positives = 105/252 (41%), Gaps = 55/252 (21%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1274
Q L+ + +T Y P D++F + G +GIVG +G+GK+++LNAL RL P G
Sbjct: 4 QPLLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
Query: 1275 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
L D + R L R + V Q P RD L
Sbjct: 62 EVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP-------RDGLRM---------- 104
Query: 1327 SVLEKCHVKEEVEAVGLETF--VKESGI------------------SFSVGQRQLICLAR 1366
V ++ E + AVG + ++ + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164
Query: 1367 ALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTV-LNMDEI 1421
L+ +++ +DE T +D A+ +L+ + G+ V+ + H ++ L +
Sbjct: 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDLAVARLLAHRL 222
Query: 1422 LILDHGHLVEQG 1433
L++ G +VE G
Sbjct: 223 LVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
V+N +S + G ++G G+GKS++ ILG G I G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 670 -IAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I VPQ + L T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVIPSLL--EFARLESK 165
Query: 727 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 224
Query: 783 RILCTHNV-QAISAADMVVVMDKG 805
+L TH + +A D + V++ G
Sbjct: 225 ILLTTHFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG-- 668
L+ +SL + L A+IG G GKS+ L I GE+ +I+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 714
+ V Q P ++ DN+ +G K Q E+LK + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
+ SGGQ+ R+ +ARA+ + +LD+ SA+D + I +
Sbjct: 139 ------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 775 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 819
H Q T I+ THN+ QA +D + G + G + ++ ++
Sbjct: 193 LKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLN----------SILGEMMLTHGSIHA----S 667
+L V+ + KG +V ++G G GKS+LL+ S GE+ L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 668 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIG 724
I + Q + ++ N+LF + TLK A + +L G
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLF-------ALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQ 780
+ LSGGQRAR+AL RA+ +LD+ S +D Q +W+ S
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----RAAG 185
Query: 781 KTRILCTHNVQAISAADMVVVM 802
+ TH++Q + A V+ M
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 52/228 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGS------- 663
L +++ + + + A+IG G GKS+ L N GE++L +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 664 ---IHASGSIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDI 712
I I+ V Q P +I +N+ +G ++ + L+ L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 713 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 768
+G D+A+ NLSGGQ+ RL +ARA+ +I + D+ SA+D A + I
Sbjct: 152 KDRLG-DLAF------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204
Query: 769 --LSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSS 813
L N + T ++ THN+ QA +D M G++ G++
Sbjct: 205 SDLKNKV--------TILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
|
Length = 265 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 38/195 (19%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG----- 668
V+L + S+ A IG G GKS++L + + GE++L ++ G
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM---- 720
+I V Q P + +IRDN++ G + + L V+ SL G ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL---VEKSL-RGANLWNEV 138
Query: 721 -AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI---MGP 776
+ + G LSGGQ+ RL +ARA+ D+ ++D+ SA+D I + AI +
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-----ISTLAIEDLINE 193
Query: 777 HMLQKTRILCTHNVQ 791
T ++ THN+Q
Sbjct: 194 LKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 34/224 (15%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPV--RD 1291
L +N T++ G I+G G+GKS++ + + G IL G +++ R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 1292 LRGRFAVVPQSP----------FL-------FEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
G F + Q P FL + LD LK + L +
Sbjct: 76 RAGLF-LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK--AKLALLGM 132
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA--NVDA-QTASI 1391
EE L V E FS G+++ + + L K+ LDE + ++DA + +
Sbjct: 133 DEEF----LNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435
N + + +IT R+ + D + +L G +V+ G+
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDV 229
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 48/214 (22%), Positives = 85/214 (39%), Gaps = 32/214 (14%)
Query: 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1305
G + +VG GAGKS++L + +T G I G + +L A + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ---- 79
Query: 1306 FEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAV-------GLETFVKESGISFSVG 1357
PF M +W L K E + L+ + S S G
Sbjct: 80 ------QQTPPFAM----PVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 1358 QRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIA 1409
+ Q + LA +L+ + ++L LDE ++D S L +S+ C+ G+ ++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 1410 HRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDE 1442
H ++ T+ + +L G L+ G + +L
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223
|
Length = 248 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--GSIAYVPQ 675
+ + ++L L G +A+IGE G GK++LL +++GE+ G++ S +I Y Q
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ 389
|
Length = 530 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASG---------SIA 671
LN +S + G+L A++GE G+GK++LL+ + G + G I +G S
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 672 YVPQVPWILSG--TIRDNILF 690
YV Q + S T+R+ + F
Sbjct: 83 YVEQQD-VHSPNLTVREALRF 102
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
VS L G ++ ++GE GSGK++LLN++ + G +H
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQKTRILCTH 788
SGGQR R+A+ARA+ ++ +LD+ SA+D V +L + H L + + +H
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISH 485
Query: 789 NVQAISA-ADMVVVMDKGQVKWIGSSADL 816
++ + A V+VM G++ G + +
Sbjct: 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
|
Length = 534 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMMLTHGSIHASGSIA 671
NVV+ +S L G + ++GE GSGKS+ L+NS GE+ +H
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-QGEIWFDGQPLHNLNRRQ 356
Query: 672 YVPQVPWILSGTIRDNILFGKNYDPQS------------------YSETLKACTLDVD-I 712
+P I ++F DP S + TL A + I
Sbjct: 357 LLPVRHRI-------QVVF---QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 713 SLM--VGGDMA----YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
++M VG D Y E SGGQR R+A+ARA+ + +LD+ S++D V
Sbjct: 407 AVMEEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
Query: 767 WILS--NAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807
IL+ ++ H L + +H++ + A V+V+ +G+V
Sbjct: 463 QILALLKSLQQKHQL--AYLFISHDLHVVRALCHQVIVLRQGEV 504
|
Length = 529 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMM 658
WY Q+ L ++L +P+ + A+IG G GKS+ + + + GEM
Sbjct: 21 WY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 659 LTHGSIHAS--------GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 709
+I +I V Q +I DN+ +G P+ + K +
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEI 131
Query: 710 VDISLMVGGDMAYIGE-------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
V+ SL D+A E + ++LSGGQ+ RL +ARA+ D+ ++D+ SA+D
Sbjct: 132 VEKSLK---DVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 763 QVARWILSNAIMGPHMLQKTRILCTHNVQ 791
R I ++ + T ++ THN+Q
Sbjct: 189 VSTRKI--EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
EEQ VL +SL + G +VA++G GSGKS+L+N ILG
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG 55
|
Length = 648 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF-A 1297
++F ++ G + + G GAGK+++L L L + GQI +DG T R R RF A
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG----KTATRGDRSRFMA 85
Query: 1298 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE----EVEAVGL----ETFVKE 1349
+ P L+ +L ++L L K+ + VGL +T V++
Sbjct: 86 YLGHLP-----GLKADLSTL---ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ 137
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
S GQ++ + LAR L + + LDE AN+D + +++ IS+ + G ++T
Sbjct: 138 ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGS------------ 669
V+L LP + A+ G G+GK+SL+N+I G LT G I +G
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISG---LTRPQKGRIVLNGRVLFDAEKGICLP 72
Query: 670 -----IAYVPQ----VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 719
I YV Q P +R N+ +G + I ++G +
Sbjct: 73 PEKRRIGYVFQDARLFPHY---KVRGNLRYGMAKSMVAQFD----------KIVALLGIE 119
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAI 773
+ +LSGG++ R+A+ RA+ ++ ++D+ L+++D R + L+ I
Sbjct: 120 -PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 774 MGPHMLQKTRIL-CTHNVQAI-SAADMVVVMDKGQVKWIGS 812
IL +H++ I AD VVV+++G+VK G
Sbjct: 179 -------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 1251 IVGRTGAGKSSILNALFRLT-PICG-----GQILVDGLNIINTPVRDLRGRFAVVPQSPF 1304
I GR+GAGK+S++NA+ LT P G G++L D I P + R V Q
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQDAR 86
Query: 1305 LF-----EGSLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1356
LF G+LR + M D + V +G+E + S S
Sbjct: 87 LFPHYKVRGNLRYGMAKS-MVAQFDKI--------------VALLGIEPLLDRYPGSLSG 131
Query: 1357 GQRQLICLARALLKSSKVLCLDECTANVD 1385
G++Q + + RALL + ++L +DE A++D
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK------- 781
LSGGQ+ R+A+ARA+ + + D+ SA+D R IL +L+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-------LLKDINRELGL 192
Query: 782 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 815
T +L TH + + D V V+D G++ G+ ++
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAY 672
E + +S + G +A++GE GSGKS SILG +L + H SGSI +
Sbjct: 19 EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG--LLPSPAAAHPSGSILF 74
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-04
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 672
+L +++ +P S+ ++G GSGKS+LL + + + I G + Y
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 673 ----------VPQVPWILSG-TIRDNILFG-KNY---DPQSYSETLKACTLDVDISLMVG 717
V Q P +I DNI + K++ + + + ++ C V + V
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV- 143
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ LSGGQ+ RL +ARA+ + ++D+ S +D ++ I ++
Sbjct: 144 --YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITEL 199
Query: 778 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819
+ ++ +HN Q ++ AD V + G++ GSS ++ S
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSIHASGSIAYVPQ 675
L + L + +G +V ++GE G GKS+L GE++L ++ A Y
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD- 416
Query: 676 VPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ S D LF G++ + + L+ + + + GG
Sbjct: 417 ---LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG-----FSTT 468
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
LS GQ+ RLAL A I + D+ + D R+ + KT I+ +
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528
Query: 788 HNVQAISAADMVVVMDKGQV 807
H+ Q AD ++ + G +
Sbjct: 529 HDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 683 TIRDNILFGKNYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
TI +I+FG P S + + A +VG D +Y+ LSGGQ+ R+ALA
Sbjct: 122 TIEKDIIFG----PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVV 800
+ D + D+ + +D Q + IL + KT IL TH++ + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 801 VMDKGQV 807
G++
Sbjct: 237 FFKDGKI 243
|
Length = 305 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG-- 668
LN +++ + K S+ A+IG G GKS+ L + I G ++ +I+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 720
I V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG----PKIHGTKDKK-KLDEIVEQSLKKSALW 137
Query: 721 AYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ +K ++LSGGQ+ RL +AR + ++ ++D+ SA+D ++ + I+
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINL 196
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
T I+ THN+ QA +D G ++ S+ +L
Sbjct: 197 KE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 609 CSWYCNNEEEQNV---VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
C C +E +V VL+ VS + +G ++A++G GSGKS+LL+ +LG +
Sbjct: 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGL-----DTP 61
Query: 666 ASGSIAYVPQVPWILSGTIR---DNILFGKNYDPQSYSETLKACTLDVDISLMVGGD--- 719
SG + + Q LS + N G Y A +V + L++G
Sbjct: 62 TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE-NVAMPLLIGKKKPA 120
Query: 720 ---------MAYIG-EKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
+A +G E N LSGG+R R+A+ARA+ + + + D+ +DA+
Sbjct: 121 EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
Query: 765 ARWILSNAIMGP-HMLQKTRIL-CTHNVQAISAADMVVVMDKGQVK 808
A I ++G + LQ T L TH++Q + M G++
Sbjct: 181 ADSIF--QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 48/235 (20%), Positives = 100/235 (42%), Gaps = 35/235 (14%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +NVT R + + DI+F++ G +G G G+G++ ++N LF + GG+I +
Sbjct: 267 EVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
Query: 1280 DGLNI-INTPVRDLRGRFAVVPQS-------------------PFLFEGSLRDNLDPFHM 1319
+G +I +P+ ++ A + +S L +G + + FH
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLD 1378
D+ + + + E + L+ I+ S G +Q + +++ L +V+ D
Sbjct: 383 VDEQRT--------AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 1379 ECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1431
E T +D A I + G ++ ++ + ++ + D I + G L +
Sbjct: 435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTR 783
++LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I A G T+
Sbjct: 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG-----ITQ 194
Query: 784 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSA 814
++ TH V+ A A VV M+ G + G ++
Sbjct: 195 VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 637 AVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------------------IAYVPQ 675
A+IG G GKS+ L +I M S H +G+ I V Q
Sbjct: 69 AIIGPSGCGKSTFLRAI-NRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 676 VPWILSGTIRDNILFGKNY----DPQSYSE----TLKACTLDVDISLMVGGDMAYIGEKG 727
P +I DNI +G D + E +L+ L ++S + +
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRIL 785
+ LSGGQ+ RL +AR + +I +LD+ SA+D + I L + G + T ++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY----TIMI 236
Query: 786 CTHNVQAIS 794
THN+Q S
Sbjct: 237 VTHNMQQAS 245
|
Length = 286 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VLN VSL L G VA++G G GKS+L ++G + G++ G
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 669 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
SI+ V P+ V I+ +R + K SE L+A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
LSGGQ R+ LARA+ + +LD+ +S +D + ++
Sbjct: 147 KRPP----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR---- 192
Query: 775 GPHMLQKTR-------ILCTHNVQAISA-ADMVVVMDKGQV 807
+L+K + + TH+++ + V+VMD GQ+
Sbjct: 193 ---LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 64/225 (28%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+L V L + +G VA++G GSGKS+LL + G + G + G
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 669 ----SIAYVPQ---------------VPWILSGTIRDNILFGKNYDPQSYS-ETLKACTL 708
+ +V Q +P L G D ++ + L+A L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA--------DSRAGAKALLEAVGL 136
Query: 709 DVDISLMVGGDMA-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767
G + Y + LSGG++ R+ALARA D+ D+ +D
Sbjct: 137 --------GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 768 ILS-----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
I N G T +L TH+ Q + D + + G++
Sbjct: 185 IADLLFALNRERG-----TTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 37/226 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSI----- 664
VL+QVS+ P ++ +++G GSGK++ L ++ G+++L SI
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 665 --HASGSIAYVPQVPWILSGTIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGG 718
+ + Q P +I DN+L G K + + +A +V + V
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIM 774
++ + LSGGQ+ L LAR + ++ +LD+ SA+D ++ +I S A
Sbjct: 156 RLS---DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211
Query: 775 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 819
+ T I+ THN+ QA +D + G++ G + L S
Sbjct: 212 -----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 58/241 (24%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 1219 IEFQNVTMRYK----PS--------------LPAALHDINFTIEGGTQVGIVGRTGAGKS 1260
++F++VT +YK P AL++I+F + G VGI+G G+GKS
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 1261 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1320
++ N L+ G+ + N D++G A++ S L L N
Sbjct: 65 TLSN-------------LIAGVTMPNKGTVDIKGSAALIAIS-----SGLNGQLTGIE-N 105
Query: 1321 DDLK-IWSVLEKCHVKE----EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375
+LK + L K +KE +E + F+ + ++S G + + A ++ + +L
Sbjct: 106 IELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDIL 165
Query: 1376 CLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+DE + D T L + +G T+ I+H +S V + + L L +G + E G
Sbjct: 166 VIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225
Query: 1434 N 1434
+
Sbjct: 226 D 226
|
Length = 549 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---------VPWILSG 682
G ++ ++G G GK++ + + G + GS ++Y PQ V +L
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYDGTVEDLLRS 424
Query: 683 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALA 741
IR +E +K L+ + E+ V LSGG+ R+A+A
Sbjct: 425 AIRSAFG-----SSYFKTEIVKPLNLE------------DLLERPVDELSGGELQRVAIA 467
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
A+ +D+Y+LD+ + +D + R I++ I
Sbjct: 468 AALSREADLYLLDEPSAYLDVE-QRIIVAKVI 498
|
Length = 591 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 18/245 (7%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
++ + L+ +SL +G ++ ++G GSGKS+L N I G + T G + +G ++ V
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS-V 89
Query: 674 PQVPWILSGTIR--DNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+ LSG + +NI F + + +KA T + I G+ Y K
Sbjct: 90 IAISAGLSGQLTGIENIEFKMLCMGFKRKE----IKAMTPKI-IEFSELGEFIYQPVK-- 142
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
S G RA+L + + DI ++D+ LS D A+ L + I KT +H
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVSH 201
Query: 789 NV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 847
N+ Q + ++ G++K G D+ + Y F N+F +++E R
Sbjct: 202 NLGQVRQFCTKIAWIEGGKLKDYGELDDV-LPKYEAF--LNDFKKKSKAEQKEFRNKLDE 258
Query: 848 ANKQI 852
+ I
Sbjct: 259 SRFVI 263
|
Length = 264 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 5e-04
Identities = 92/375 (24%), Positives = 151/375 (40%), Gaps = 66/375 (17%)
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT----LLTKIVNAPVLFFDQ-- 988
S Y++V+ I MF S TL ++ G KV T L I+ + FFDQ
Sbjct: 869 SLYILVIAI-AMFIS-ETLKNYYNNVIGE-----KVEKTMKRRLFENILYQEISFFDQDK 921
Query: 989 -TPGGRILNRFSSDLYMIDDSLPFILNILL-ANFVGLLGIAVVLS-YVQVFFLLLLVPFW 1045
PG + + D++++ L + NI++ +F+ L +++V+S Y +L +
Sbjct: 922 HAPG-LLSAHINRDVHLLKTGL--VNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978
Query: 1046 FIYSKLQFFYR-----STSRELRRLDSVSRSPIYASFTETLNGSS-----------TIRA 1089
FI+ ++ F R + E + ++ Y S E S T+
Sbjct: 979 FIFMRV-FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037
Query: 1090 FKSEDYFMAKFKEHVVLYQRTSYSELT---ASLW-LSLRLQLLAAFIISFIATM-AVIGS 1144
+ EDYF E + Y T + LW S QL FI SF + +
Sbjct: 1038 YGLEDYF-CNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQL---FINSFAYWFGSFLIR 1093
Query: 1145 RGNLPATFSTPGLVGLAL--SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM------ 1196
RG + L SYA ++SL G ++E +S E+ +
Sbjct: 1094 RGTILVDDFMKSLFTFLFTGSYAGKLMSLKG-------DSENAKLSFEKYYPLIIRKSNI 1146
Query: 1197 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGR 1254
DV G + +G IE +V RY +P++P D+ F+ + IVG
Sbjct: 1147 DVRDN---GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-YKDLTFSCDSKKTTAIVGE 1202
Query: 1255 TGAGKSSILNALFRL 1269
TG+GKS++++ L R
Sbjct: 1203 TGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 5e-04
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 672
+N +S+ + K ++ A+IG G GKS+ L SI M S + G I Y
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLNILDSNI 95
Query: 673 -----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 719
V Q P +I +NI Y E K+ LD V+ SL
Sbjct: 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA----GERRKS-VLDEIVEESLTKAAL 150
Query: 720 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA--- 772
+ ++ ++LSGGQ+ RL +AR + + +LD+ SA+D +SNA
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP------ISNAKIE 204
Query: 773 -IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 807
++ + + I+ THN+ QA+ +D G +
Sbjct: 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPVRDLR 1293
L++I+ ++ GT ++G +GAGK+++L+ L + + G+IL++G + ++ +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL----DKNFQ 78
Query: 1294 GRFAVVPQSPFLFEGS-LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1352
V Q +R+ L F L+ GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALR-FSAL--LR-----------------GL--------- 109
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTVITI 1408
SV QR+ + + L +L LDE T+ +D+Q A L+ S G ++
Sbjct: 110 --SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS---GQAILCT 164
Query: 1409 AHRISTVL--NMDEILILDHG 1427
H+ S + D +L+L G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 1250 GIVGRTGAGKSSILNALFR--LTPI------------CGGQILVDGLNIINTPVRDLRGR 1295
G++G+TGAGKSS+ NALF + + Q DGL +++ P RGR
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 1296 F 1296
Sbjct: 61 R 61
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 1246 GTQVGIVGRTGAGKSSILNALF-RLTP--ICGGQILVDGLNIINTPVR--------DLRG 1294
GT ++G +GAGK+++LN L R+T I GG LV+G + ++ R DL
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETF----VKE 1349
+ V +S F LR P + S EK EEV + + +E++ V
Sbjct: 849 PTSTVRES-LRFSAYLRQ---PKSV-------SKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLC-LDECTANVDAQTA-SILQNAISSECKGMTVIT 1407
G +V QR+ + + L+ K+L LDE T+ +D+QTA SI + G ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 1408 IAHRISTVL--NMDEILILDHG 1427
H+ S +L D +L+L G
Sbjct: 958 TIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
VS L G ++ ++GE GSGK++LL I G + G++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMMLTHGSIHASG------- 668
L +++ + KG + A++G G+GKS+L LN IL G ++ I S
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 669 -SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
S+ V Q P + S ++ ++ FG + VD +L G + ++ +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKLPEDEVRKRVDNALKRTG-IEHLKD 136
Query: 726 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
K + LS GQ+ R+A+A + + +LD+ + +D I+ + L T I
Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
Query: 785 LCTHNVQAISA-ADMVVVMDKGQV 807
+ TH++ + D V VM +G+V
Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1248 QVGIVGRTGAGKSSILNALFR 1268
+V +VGR GKS+++NAL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL--------GEMMLTHGSIHA-- 666
E + +L V L + +G +A+IGE GSGKS+LL +IL GE+ L +H
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMD 78
Query: 667 --------SGSIAYVPQVPWILSGTI--RDNI-----LFGKNYDPQSYSETLKACTLDVD 711
+ + +V Q ++L T+ +N+ L G++ QS +
Sbjct: 79 EEARAKLRAKHVGFVFQ-SFMLIPTLNALENVELPALLRGES-SRQSRNGAKALLE---- 132
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
L +G + ++ + LSGG++ R+ALARA D+ D+ +D Q I
Sbjct: 133 -QLGLGKRLDHLPAQ---LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 772 AIMGPHMLQKTRILCTHNVQ 791
T IL TH++Q
Sbjct: 189 LFSLNREHGTTLILVTHDLQ 208
|
Length = 228 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 31/218 (14%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSILGEMMLTHGSIHASG----------- 668
L +++ + + + A+IG G GKS+ L N + ++ G + G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 669 --SIAYVPQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 719
++ V Q P + +I +NI + KN D + + C V + V
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEE--ALVVDCLQKVGLFEEVKDK 135
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ + + LSGGQ+ RL +ARA+ + +LD+ SA+D + I H L
Sbjct: 136 LK---QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 780 QKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+ I+ THN+ Q AD G++ G S +
Sbjct: 193 --SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRI- 784
LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I L +T I
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII--------RELAETGIT 193
Query: 785 --LCTHNVQ-AISAADMVVVMDKGQV 807
+ TH V+ A A VV M+ G +
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----H--ASGSIAYVPQVPWI 679
+S L +G +A+IGE GSGKS+L + G + T G + H G +Y Q
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ---- 87
Query: 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG-EKGVN--------- 729
R ++F DP + + + +D L + D+ EK +
Sbjct: 88 -----RIRMIF---QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 730 ----------LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
L+ GQ+ RL LARA+ + + D+ L+++D + R L N ++ L
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM-RSQLINLML---EL 195
Query: 780 QKTR----ILCTHNV---QAISAADMVVVMDKGQVKWIGSSADLAVS 819
Q+ + I T ++ + IS D V+VM +G+V GS+AD+ S
Sbjct: 196 QEKQGISYIYVTQHLGMMKHIS--DQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 670
WY + +N+ L+ + + + A+IG G GKS+ + + L M+ S+ +G I
Sbjct: 33 WYGEDHALKNINLD-----IHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKI 86
Query: 671 AY---------------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709
Y V Q P +I DN+ +G P+ + K TLD
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKK-TLD 141
Query: 710 --VDISLMVGG----------DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 757
V+ SL D AY LSGGQ+ RL +AR + D+ ++D+
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAY------GLSGGQQQRLCIARCLAIEPDVILMDEPT 195
Query: 758 SAVD 761
SA+D
Sbjct: 196 SALD 199
|
Length = 271 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
VG D G+ V+LSGGQ+ R+++ARA+ ++ + D+ SA+D ++ +L IM
Sbjct: 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQ 196
Query: 776 PHMLQ-KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ KT ++ TH + A + V+ + +G+++ G+ L
Sbjct: 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 670
++++++ + + A +G G+GK++ L+ + G + T G++ G S+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 671 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729
PQ + T+ ++ILF +S+ E L+++ L G E+ +
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LSGG + +L++A A + + +LD+ S VD R I ++ + +T I+ TH+
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD--LLLKYRSGRTIIMSTHH 1119
Query: 790 V-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 827
+ +A D + ++ +G++ G+ L +GF+ T
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLT 1158
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664
VL VSL + G VA+ G G+GKS+LL S+ + G I
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 624 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
VS L G ++ ++GE GSGKS+LL + G + HG+
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 49/181 (27%)
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 689
+GSL + G GSGKS++L++I L G +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIG-----------------------LALGGA-QSATR 53
Query: 690 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV----Y 745
+ ++ LSGG++ ALA +
Sbjct: 54 RRSGVKAGCIV-----AAVSAELIFTRLQ-----------LSGGEKELSALALILALASL 97
Query: 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNVQAISAADMVVVMD 803
+Y+LD++ +D + + L+ AI+ L K I+ TH + AD ++ +
Sbjct: 98 KPRPLYILDEIDRGLDPRDGQ-ALAEAIL--EHLVKGAQVIVITHLPELAELADKLIHIK 154
Query: 804 K 804
K
Sbjct: 155 K 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 1212 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLT 1270
D P +I F + + Y P P ++NF I+ +++ +VG G GKS+IL + L
Sbjct: 502 DRPGPPIISFSDASFGY-PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560
Query: 1271 PICG-------------GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF 1317
P G Q VDGL++ + P+ + F VP E LR +L F
Sbjct: 561 PSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------EQKLRAHLGSF 614
Query: 1318 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+ +L + + + S GQ+ + A+ K +L L
Sbjct: 615 GVTGNLAL-----------------------QPMYTLSGGQKSRVAFAKITFKKPHILLL 651
Query: 1378 DECTANVD 1385
DE + ++D
Sbjct: 652 DEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
L+AV+GE +GKS+LLN++LGE +L G + I +
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVL 40
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 32/164 (19%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGSIHA-S 667
+L+ +SL P G + +IG GSGKS+LL +L L S A +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84
Query: 668 GSIAYVP-QVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISLMVGG 718
+AY+P Q+P T+R+ + G+ + + +A +L VG
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL-------VG- 136
Query: 719 DMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ + + V+ LSGG+R R +A V S +LD+ SA+D
Sbjct: 137 -LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 667
V+ VSL + G +V ++G G+GK++ ++G + G+I A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 668 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I Y+PQ I ++ DN++ +E + D LM + ++ +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDS 133
Query: 727 -GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
G +LSGG+R R+ +ARA+ +LD+ + VD
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ +T Y + A+ + + G G++G GAGK++ L T + G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKE 1336
V G +I+ T + D+ PQ D +D + L +++ L +E
Sbjct: 1997 TVAGKSIL-TNISDVHQNMGYCPQF---------DAIDDLLTGREHLYLYARLRGVPAEE 2046
Query: 1337 -------EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
++++GL + ++S G ++ + A AL+ ++ LDE T +D Q
Sbjct: 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
Query: 1390 SILQNAISSECK-GMTVITIAHRI 1412
+L N I S + G V+ +H +
Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1292
L + ++ G + ++G +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 1293 RGR--------FAVVP--------QSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
R + F ++P + P L G S R + + K
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----------------RNGAK 128
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+E +GL + S G++Q + LARA VL DE T N+D QT + +
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 1396 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432
+ S + G T+I + H + D L L +G L E+
Sbjct: 189 LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
|
Length = 228 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
+ L +S+ ++ + G G GKSSLL I G M + G+I+ P+
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 679 I----------LSGTIRDNILF-GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
L T+ +N+ F + Y+ A TL I D+ + EK
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDL--LDEKC 121
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
+LS G + +A+AR + SD+++LD+V + + + R +L+N I
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-NRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS---GTIRDNI 688
+G ++ ++G G GK++ + G + G + I+Y PQ +I GT+ D +
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIKPDYDGTVEDLL 421
Query: 689 -----LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALAR 742
G +Y SE +K L+ L+ +K V LSGG+ R+A+A
Sbjct: 422 RSITDDLGSSY---YKSEIIKPLQLE---RLL---------DKNVKDLSGGELQRVAIAA 466
Query: 743 AVYHGSDIYMLD 754
+ +D+Y+LD
Sbjct: 467 CLSRDADLYLLD 478
|
Length = 590 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 1238 DINFTIEGGTQV-GIVGRTGAGKSSILNA----LFRLTPICGGQILVD 1280
DI+ + + IVG GAGKSSIL+A L+ TP G L D
Sbjct: 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDD 63
|
Length = 908 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------------IA 671
VS + G ++ + G VG+G++ L ++ G + G I G IA
Sbjct: 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337
Query: 672 YVP----QVPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGD 719
YVP +L +I +NI D + + + I
Sbjct: 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI------K 391
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ LSGG + ++ LAR + + +LD+ +D
Sbjct: 392 TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILC 786
SGGQR R+A+ARA+ D+ + D+ +SA+D V +L N +M LQ+ + +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMD---LQQELGLSYVFI 211
Query: 787 THN---VQAISAADMVVVMDKGQVKWIGSSADL 816
+H+ V+ I AD V+VM G+ G+ +
Sbjct: 212 SHDLSVVEHI--ADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASGSIAY 672
++ V N V+L + +G++ A+IG G GK++ L +I LT G I G Y
Sbjct: 16 DKQAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 673 VPQVPWIL----------------SGTIRDNILFG------KNYDP--QSYSETLKACTL 708
P+V + + ++ DN++ G ++ D + +L+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 709 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQVARW 767
++ + LSGGQ+ RL +ARA+ +I ++D+ SA+D A AR
Sbjct: 135 WDEVK-------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR- 186
Query: 768 ILSNAIMGPHMLQKTRILCTHNV-QAISAAD 797
+M T I+ THN+ QA +D
Sbjct: 187 --IEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.003
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASGS------ 669
++ +LN V+ G ++AV+G GSGKS+LLN++ G + + G+I A+
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQI 138
Query: 670 ---IAYVPQ----VPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISL--MVGGD 719
+V Q P + T+R+ ++F P+S ++ K + IS + +
Sbjct: 139 LKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 720 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
IG + +SGG+R R+++A + + +LD+ S +DA A ++ +
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG---SL 252
Query: 779 LQKTRILCTHNVQAISAA----DMVVVMDKGQVKWIGSSAD 815
QK + + T Q S D V+V+ +G+ + G +D
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE--MMLTHGSI 664
+L V+L + KG + A++G GSGKS+L +I G +T G+I
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 50/190 (26%), Positives = 70/190 (36%), Gaps = 61/190 (32%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-----------GEMMLTHGSIHASGSIA 671
L + + +P G L V G GSGKSSL+N L E H I I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 672 YVPQV------------PWILSG---TIRDNILF-----GKNYDPQSYSETLK----ACT 707
V + P +G IR+ LF GK Y+ ++ K A
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 708 LDVDI------------------SLM-VGGDMAYIGEKGVNLSGG--QRARLA--LARAV 744
LD+ + +L VG +G+ LSGG QR +LA L++
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 745 YHGSDIYMLD 754
G +Y+LD
Sbjct: 189 -TGKTLYILD 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 65/293 (22%), Positives = 117/293 (39%), Gaps = 56/293 (19%)
Query: 533 TCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGL 592
T L L L+S + + P L+ A ++ +L + + YK E
Sbjct: 271 TLLFLRTPLLSAVGALP----TLLSAQVAFNKLNKL-ALAPYKAEFP--------RPQAF 317
Query: 593 SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 652
++ + + +++ T ++ ++ + ++L + +G L+ +IG GSGKS+L
Sbjct: 318 PDWQT----LELRNVTFAY-----QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTL--- 365
Query: 653 ILGEMMLTHGSIHASGSIAYVPQVP----------WILSGTIRDNILF-------GKNYD 695
M+LT SG I + P + S D LF GK +
Sbjct: 366 ---AMLLTGLYQPQSGEI-LLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPAN 421
Query: 696 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755
P + L+ + + L G ++ + LS GQ+ RLAL A+ DI +LD+
Sbjct: 422 PALVEKWLERLKMAHKLEL-EDGRISNL-----KLSKGQKKRLALLLALAEERDILLLDE 475
Query: 756 VLSAVDAQVARWILSNAIMGPHMLQ--KTRILCTHNVQAISAADMVVVMDKGQ 806
+ D R ++ P + + KT +H+ AD ++ M GQ
Sbjct: 476 WAADQDPHFRREFYQ--VLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQ 526
|
Length = 547 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV----- 676
+L VS+ + + + A+IG G GKS+ L L M + G + + Q
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVEGRVEFFNQNIYERR 80
Query: 677 ----------------PWILSGTIRDNILFGKN---YDPQ-SYSETLKACTLDVDISLMV 716
P + ++ DN+ +G + P+ + +++ D D+ +
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140
Query: 717 GGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
I + ++LSGGQ+ RL +ARA+ + ++D+ +D +A + + I
Sbjct: 141 KHK---IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP-IASMKVESLIQSL 196
Query: 777 HMLQK-TRILCTHNVQAIS 794
+ + T ++ +HN+ +S
Sbjct: 197 RLRSELTMVIVSHNLHQVS 215
|
Length = 261 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1455 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-258 Score=2450.15 Aligned_cols=1236 Identities=42% Similarity=0.705 Sum_probs=1136.4
Q ss_pred CCCCCCCh--hHHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHh
Q 000511 199 DCNTDSSY--WDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYP 276 (1455)
Q Consensus 199 ~~e~~~~~--~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~ 276 (1455)
.|.+.++. +|+++|||++|++++|||++|+.+|+|+++++++++.+.++|++.|+++.++++++|+++++++++|+|+
T Consensus 123 ~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~~ 202 (1381)
T KOG0054|consen 123 NPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGRT 202 (1381)
T ss_pred CcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHH
Confidence 34455555 9999999999999999999999999999999999999999999999998744345789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 277 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355 (1455)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy 355 (1455)
++..++++.+.+...|++|.+++.++++++++ .+.+.||+++++++++.++++++.++|+|...++|+++|+++.++||
T Consensus 203 ~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY 282 (1381)
T KOG0054|consen 203 FLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIY 282 (1381)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999884 56788999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000511 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 435 (1455)
Q Consensus 356 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~ 435 (1455)
+|+|+++...+++.+.|+++|+|++|++|+.++..++|.+|.+|+|+++++|+||.++|+++++|++++++++|+|.+++
T Consensus 283 ~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a 362 (1381)
T KOG0054|consen 283 RKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLA 362 (1381)
T ss_pred HhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 436 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 515 (1455)
Q Consensus 436 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1455)
++++++|++.|+.+|+|+++|+|+|+|||+||||+||+.|.++|++.|++|++.++|..++.+++.+++.+.|+++++++
T Consensus 363 ~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~t 442 (1381)
T KOG0054|consen 363 KKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVT 442 (1381)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCcc
Q 000511 516 FGLFA-LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 594 (1455)
Q Consensus 516 f~~~~-~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 594 (1455)
|++|+ ..++.++++++|+++++|++++.|+.++|+.++.++++.+|++|+++||..+|.++..... .+.
T Consensus 443 F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~--~~~-------- 512 (1381)
T KOG0054|consen 443 FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER--SPD-------- 512 (1381)
T ss_pred HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc--CCC--------
Confidence 99999 7788999999999999999999999999999999999999999999999998876632210 011
Q ss_pred CCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcCcEEEEc
Q 000511 595 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVP 674 (1455)
Q Consensus 595 ~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~ 674 (1455)
...+.+++++|++|+|++++++| .|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+||||
T Consensus 513 -~~~~~~i~i~~~sfsW~~~~~~~---tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~ 588 (1381)
T KOG0054|consen 513 -EAGENAIEIKNGSFSWDSESPEP---TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVP 588 (1381)
T ss_pred -CCCCceEEEeeeeEecCCCCCcc---cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEec
Confidence 23456799999999999854444 49999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEc
Q 000511 675 QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754 (1455)
Q Consensus 675 Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlD 754 (1455)
|+|||+||||||||+||++||++||++|+++|+|++|++.||+||+|+|||+|.||||||||||+||||+|+++||||||
T Consensus 589 Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 589 QQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred cccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhh
Q 000511 755 DVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL 834 (1455)
Q Consensus 755 ep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 834 (1455)
||+||||+|+++|||++|+.| .+++||+|+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++..+.+.+.
T Consensus 669 DplSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~ 747 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQ 747 (1381)
T ss_pred CcchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhh
Confidence 999999999999999999977 8899999999999999999999999999999999999999976655544321111110
Q ss_pred hh--hhhhhcccccc------hhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhh-hhHHHHHHHHHHHH
Q 000511 835 HM--QKQEMRTNASS------ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF-SGWFITLVICLSAI 905 (1455)
Q Consensus 835 ~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~-~g~~~~~~~~~~~~ 905 (1455)
.. .....+..... ........+++.....++..+..++|+++.|.+++++|+.|+++ .|+....+++++.+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v 827 (1381)
T KOG0054|consen 748 EEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFV 827 (1381)
T ss_pred ccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 00 00000000000 00000000111111112234566778889999999999999998 56666676778888
Q ss_pred HHHHHHhhhhhhhhhhhcccCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000511 906 LMQASRNGNDLWLSYWVDTTGSSQTK-YSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984 (1455)
Q Consensus 906 ~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ 984 (1455)
..+++..+.++|+++|++........ .+..+|+++|.+++++..++.+++++.+...+.++++++|++|+++++|+||+
T Consensus 828 ~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~ 907 (1381)
T KOG0054|consen 828 LTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMS 907 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 99999999999999999875432221 46779999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRR 1064 (1455)
Q Consensus 985 ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~ 1064 (1455)
|||+||+|||+||||+|++.+|..+|..+..++.+++.+++++++++++.|+++++++|+.++|++++++|++++||++|
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR 987 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR 987 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000511 1065 LDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS 1144 (1455)
Q Consensus 1065 l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~ 1144 (1455)
+|+.+|||+|+||+|+++|+.|||||+.|++|.+++.+++|.+++++|.....+||+++|+|+++++++.++++++++..
T Consensus 988 LesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~ 1067 (1381)
T KOG0054|consen 988 LESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP 1067 (1381)
T ss_pred hhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888643
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cccCCCCCCCCCCCccEEEE
Q 000511 1145 RGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE--LCGYQSLSPDWPFQGLIEFQ 1222 (1455)
Q Consensus 1145 ~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~--~~~~~~~~~~wp~~g~I~f~ 1222 (1455)
.. ..++|.+|++++|++++++.+++++++.+++|+.|+|+||+.+|.++|+|+ ..+...||++||.+|+|+|+
T Consensus 1068 ~~-----~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~ 1142 (1381)
T KOG0054|consen 1068 SG-----LISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFE 1142 (1381)
T ss_pred CC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEE
Confidence 21 146999999999999999999999999999999999999999999998883 22223388899999999999
Q ss_pred EEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCC
Q 000511 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302 (1455)
Q Consensus 1223 nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQd 1302 (1455)
|++++|+|+.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||+++++||||
T Consensus 1143 ~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQd 1222 (1381)
T KOG0054|consen 1143 DLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQD 1222 (1381)
T ss_pred EeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000511 1303 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1455)
Q Consensus 1303 p~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEa 1380 (1455)
|+||+||+|+||||+++++|+|||+|||+|+|+++++++ |||+.|.|+|.|||.||||++||||||||++|||+||||
T Consensus 1223 PvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1223 PVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred CceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1381 TS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
||++|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|++|+++++|.|++++++.+
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~ 1376 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAA 1376 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-210 Score=2127.72 Aligned_cols=1425 Identities=31% Similarity=0.524 Sum_probs=1180.2
Q ss_pred CccCCCCcc-ccccc------cccchhhhHHHHHhhhhhHHH-HHhhhc-ccc-cCCcccchhhHHHHHHHHHHHHHHHH
Q 000511 2 DFICPNSPF-VWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-ITQ-RSPRQNQRINLMEKVFLHILPLVGAC 71 (1455)
Q Consensus 2 ~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~ 71 (1455)
+-+|+.... +|.+. .+.+||++..+..+++..... ..+.+- .++ .+...+..+..+.|+.+.++++..++
T Consensus 7 ~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1622)
T PLN03130 7 DWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTA 86 (1622)
T ss_pred hhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHH
Confidence 347964322 35553 466999995444444433332 111111 121 12222233356666666555544333
Q ss_pred HHHHHHHHH---HHHhcc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhH
Q 000511 72 LSSVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLV 143 (1455)
Q Consensus 72 ~~~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt 143 (1455)
...+..... ..+... +....+.. +++.++..++++++.++.+.||.|+.+++..+.+||++. +++.++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (1622)
T PLN03130 87 EPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLS-- 164 (1622)
T ss_pred HHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHH--
Confidence 333221111 011110 11122333 566777888888788889999999999999999999998 77776621
Q ss_pred Hhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHhhccccCcccccc---ccc------ccCCCCCCCCCCCCCChhHHHH
Q 000511 144 TFSSFEVLK---CLKEICLVLLDIMFGISINIIRVKRASSRRSSIE---ESL------LSVDGDVEEDCNTDSSYWDLMA 211 (1455)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~---~~~------~~~~~~~~~~~e~~~~~~s~~~ 211 (1455)
..+.... .. ....+++.+++.++.+ ...+..++..... .+. -+.....+++||+++|++||++
T Consensus 165 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~ 239 (1622)
T PLN03130 165 --VKEYYSSFVLYL-YISEVAAQVLFGILLL--VYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIF 239 (1622)
T ss_pred --HHHHHhccccce-ehhHHHHHHHHHHHHH--HHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHH
Confidence 1111111 11 1222333333333221 1123222211110 010 0001112258999999999999
Q ss_pred HHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 000511 212 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIG 291 (1455)
Q Consensus 212 f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 291 (1455)
|||++|++++|||++|+.+|||+++++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++.+++.
T Consensus 240 F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL-K-KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 2 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh
Q 000511 292 FAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD 371 (1455)
Q Consensus 292 ~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~ 371 (1455)
+++|++++.+++++.+....+.++++++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999764444567777777777777777777888888899999999999999999999999988888899
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 372 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 451 (1455)
Q Consensus 372 g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 451 (1455)
|+++|+|++|++++......+|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.++++++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHH
Q 000511 452 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 531 (1455)
Q Consensus 452 R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~~ 531 (1455)
|++.++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++++++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEcceEee
Q 000511 532 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 611 (1455)
Q Consensus 532 ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w 611 (1455)
|+++++++.+..|+..+|..+..+.++++|++||++||..+|..+... .+. ......|+++|++|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~----~~~---------~~~~~~I~~~nvsf~y 624 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN----PPL---------EPGLPAISIKNGYFSW 624 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC----Ccc---------cCCCCceEEEeeEEEc
Confidence 999999999999999999999999999999999999998765422100 000 0122469999999999
Q ss_pred cCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC-cEEEEcCcEEEEcCCCCCCCcCHHHHhcc
Q 000511 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAYVPQVPWILSGTIRDNILF 690 (1455)
Q Consensus 612 ~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~-G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~ 690 (1455)
+.+++ +++|+|+||++++|++++|+||+|||||||+++|+|+++|++ |+|.++++||||+|+|||||+||||||+|
T Consensus 625 ~~~~~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 625 DSKAE---RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred cCCCC---CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhC
Confidence 75432 245999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHH
Q 000511 691 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770 (1455)
Q Consensus 691 g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~ 770 (1455)
|+++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|++
T Consensus 702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhh--hhc-ccccc
Q 000511 771 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ--EMR-TNASS 847 (1455)
Q Consensus 771 ~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~ 847 (1455)
+|+.+ .++++|+|+|||+++.++.||+|++|++|+++++|+++|+.+..+.+..+..+.....+.... +.. .....
T Consensus 782 ~~l~~-~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1622)
T PLN03130 782 KCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSS 860 (1622)
T ss_pred HHhhH-HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccc
Confidence 98766 567899999999999999999999999999999999999987654443322111000000000 000 00000
Q ss_pred hhh-h---hhhhcccc--cCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 000511 848 ANK-Q---ILLQEKDV--VSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW-FITLVICLSAILMQASRNGNDLWLSY 920 (1455)
Q Consensus 848 ~~~-~---~~~~~~~~--~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wl~~ 920 (1455)
... . ........ .+..+......++|+++.|.+++++|++|+++.|. +.+++++++.++.++...++++|+++
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 940 (1622)
T PLN03130 861 KPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940 (1622)
T ss_pred ccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000000 00000112234567788999999999999998653 34444455666778888889999999
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHh
Q 000511 921 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1000 (1455)
Q Consensus 921 w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~ 1000 (1455)
|++.... ......+|+++|++++++..++.+++.+.+.+.+.+++.++|++++++++++|++||+++|+|+|+|||++
T Consensus 941 w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~ 1018 (1622)
T PLN03130 941 WTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAK 1018 (1622)
T ss_pred HHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHH
Confidence 9985322 12234578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHh
Q 000511 1001 DLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1080 (1455)
Q Consensus 1001 D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Et 1080 (1455)
|++.+|..++..+..++..++.+++.++++++..|+++++++|+.++++.++++|.+++|++++++.++++|+++|+.|+
T Consensus 1019 Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Et 1098 (1622)
T PLN03130 1019 DLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEA 1098 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999998888888888888888898888888999999999999999999999999999999
Q ss_pred hcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHH
Q 000511 1081 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGL 1160 (1455)
Q Consensus 1081 l~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl 1160 (1455)
++|+.|||+|+++++|.+++.+..|.+++..+.....++|++.++++++++++.+.+.+.+.... ........++.+|+
T Consensus 1099 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~-~~~~~~~~~~~~G~ 1177 (1622)
T PLN03130 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNG-RAENQAAFASTMGL 1177 (1622)
T ss_pred hCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccccchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999887766555544443211 10011122678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEecCCCCcceee
Q 000511 1161 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1238 (1455)
Q Consensus 1161 ~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~ 1238 (1455)
+++|++.+...++++.+.+.++|+.++|++|+.+|.+.|+|+.. +...+++.||.+|.|+|+||+|+|+++.++||+|
T Consensus 1178 ~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~ 1257 (1622)
T PLN03130 1178 LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1257 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecc
Confidence 99999999999999999999999999999999999998887532 2234556799999999999999998877789999
Q ss_pred eeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC
Q 000511 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH 1318 (1455)
Q Consensus 1239 isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~ 1318 (1455)
+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+|||||||||++
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHH
Q 000511 1319 MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396 (1455)
Q Consensus 1319 ~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i 1396 (1455)
+++|+|+|+|+++++++++++++ ||||.++|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhCC
Q 000511 1397 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455 (1455)
Q Consensus 1397 ~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g~ 1455 (1455)
++.+++||+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|.
T Consensus 1418 ~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1418 REEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred HHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 99999999999999999999999999999999999999999999878899999998873
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-209 Score=2129.07 Aligned_cols=1407 Identities=31% Similarity=0.515 Sum_probs=1195.3
Q ss_pred ccchhhhHHHHHhhhhhHHH-HHhhhc-ccccCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-cc
Q 000511 17 FSKCFDDMILDFATNMVTIF-IILIIG-ITQRSPR-QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFV-SY 92 (1455)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 92 (1455)
+.+||.+..+..+++.++.+ ....+- ..++..+ ....+.+..|++...++++ ++++. ++...|..+.... .+
T Consensus 23 ~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 23 FTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWI---VCWAD-LFYSFWERSHGRAPAP 98 (1522)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHH---HHHHH-HHHHHHhccccccccc
Confidence 55999998887766666555 221111 1122222 4455667778776655443 23221 2333333322222 25
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhHHhhhhhhhhh---hhHHHHHHHHHHHHHH
Q 000511 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKC---LKEICLVLLDIMFGIS 169 (1455)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~rt~~~~~~~~~~---~~~~~~~~~~~~~~~~ 169 (1455)
.+++++++.+++++.++++++.||.|+.|||.++.+||++++++|++++||+|........ ......+++.++++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999875321100 0012233344444443
Q ss_pred HHHHhhccc-cCcccccccccccCCCCCCCCCCCCCChhHHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHH
Q 000511 170 INIIRVKRA-SSRRSSIEESLLSVDGDVEEDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKL 248 (1455)
Q Consensus 170 ~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~ 248 (1455)
.++. |. .+|+..+.+ . .++.+++||+++|++||++|||+||++++|||++|+.+|||+++++++++.+.++|
T Consensus 179 ~~~~---~~~~~~~~~~~~-~---~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 179 QLVL---SCFSDKSPLFSE-T---NHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHH---HhhcCCCCcccc-c---cccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 3222 22 223222211 0 11112479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc---------------------------------------CCCCcchHHHHHHHHhHhHHHHHHHHHHHHH
Q 000511 249 LSCWQAQRSC---------------------------------------NCTNPSLVRAICCAYGYPYICLGLLKVVNDS 289 (1455)
Q Consensus 249 ~~~w~~~~~~---------------------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 289 (1455)
++.|+++.++ +.++++|+++++++|++.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999875310 1134789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 000511 290 IGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSE 368 (1455)
Q Consensus 290 ~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~ 368 (1455)
+.+++|++++.+++++.++ .+.+.||++++++++++++.+++.++|.|...+++.++|++|+..||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 9999999999999999763 344568999999999999999999999999999999999999999999999999998888
Q ss_pred CChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 369 FSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 448 (1455)
Q Consensus 369 ~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1455)
.++|+++|+|++|++++..+...+|.+|..|++++++++++|.++|+++++|++++++++|++.++++++++.++++++.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC
Q 000511 449 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALM--GHQL 526 (1455)
Q Consensus 449 ~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~L 526 (1455)
+|+|++.++|+++|||+||+||||+.+.+++++.|++|++..++..+...+..+.+...|.++.+++|++|.+. ++.|
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999888888878888888888999999876 4679
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEc
Q 000511 527 DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 606 (1455)
Q Consensus 527 ~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 606 (1455)
+++.+|+++++++++..|+..+|..++.+.++.+|++||++||+.++.++..... .... ......++++|
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~-~~~~---------~~~~~~i~~~~ 641 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER-RTIK---------PGEGNSITVHN 641 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc-cccC---------CCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999876543211000 0000 01123699999
Q ss_pred ceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcCcEEEEcCCCCCCCcCHHH
Q 000511 607 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 686 (1455)
Q Consensus 607 ~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~ 686 (1455)
++|+|+.+ + +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||+|+||++++||||
T Consensus 642 ~~~~~~~~-~---~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~e 717 (1522)
T TIGR00957 642 ATFTWARD-L---PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRE 717 (1522)
T ss_pred eEEEcCCC-C---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHH
Confidence 99999742 1 2359999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHH
Q 000511 687 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766 (1455)
Q Consensus 687 nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~ 766 (1455)
||.||.++|+++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++|+|+|||||||+||+++++
T Consensus 718 NI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~ 797 (1522)
T TIGR00957 718 NILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797 (1522)
T ss_pred HhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC-cccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhccccCcccccccch--hh---hhh---
Q 000511 767 WILSNAIMG-PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDT--SL---HMQ--- 837 (1455)
Q Consensus 767 ~i~~~~~~~-~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~--~~---~~~--- 837 (1455)
++++.+... .+.+++|+|+|||+++.++.||+|++|++|+++++|+++++.+..+.+..+..+... .. +..
T Consensus 798 ~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 877 (1522)
T TIGR00957 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTA 877 (1522)
T ss_pred HHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccc
Confidence 999986421 156789999999999999999999999999999999999997654433222110000 00 000
Q ss_pred ---hhhhcc-------cc---cchhh-h------h--hh---h---cc--cccCCCcchhhHHHHHHHhcCcchhHHHHH
Q 000511 838 ---KQEMRT-------NA---SSANK-Q------I--LL---Q---EK--DVVSVSDDAQEIIEVEQRKEGRVELTVYKN 887 (1455)
Q Consensus 838 ---~~~~~~-------~~---~~~~~-~------~--~~---~---~~--~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 887 (1455)
.+..+. .. ..+.. . . .. . .. +.....+...+..++|.++.|.+++++|++
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 957 (1522)
T TIGR00957 878 LVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWD 957 (1522)
T ss_pred cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHH
Confidence 000000 00 00000 0 0 00 0 00 000000011234456777889999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 888 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 967 (1455)
Q Consensus 888 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1455)
|+++.|+...++++++.++.+++..+.++|+++|++............+|+++|++++++..++.++..+++.+.+.+++
T Consensus 958 Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~ 1037 (1522)
T TIGR00957 958 YMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQAS 1037 (1522)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887776666777777888889999999999753211122334567889999999999998888888899999999
Q ss_pred HHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000511 968 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1047 (1455)
Q Consensus 968 ~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~ 1047 (1455)
+++|++++++++++|++||+++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++..|+++++++|++++
T Consensus 1038 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~ 1117 (1522)
T TIGR00957 1038 RVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLL 1117 (1522)
T ss_pred HHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999998888998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQL 1127 (1455)
Q Consensus 1048 ~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 1127 (1455)
++.++++|.+++|++++++.++++|+++++.|+++|+.|||+||+|++|.+++.+..|.++++.+...+.++|++.++++
T Consensus 1118 ~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1197 (1522)
T TIGR00957 1118 YFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLEC 1197 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc--c
Q 000511 1128 LAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--G 1205 (1455)
Q Consensus 1128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~--~ 1205 (1455)
++++++.+++.+.++. .+..++|.+|++++|+..+..++.++++.++++|+.++|++|+.+|.+.++|+.. +
T Consensus 1198 ~~~~~~~~~~~~~v~~------~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~ 1271 (1522)
T TIGR00957 1198 VGNCIVLFAALFAVIS------RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ 1271 (1522)
T ss_pred HHHHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 8876555554444421 2345799999999999999999999999999999999999999999988877531 2
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC
Q 000511 1206 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII 1285 (1455)
Q Consensus 1206 ~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~ 1285 (1455)
...++++||.+|.|+|+||+|+|+++.++||+||||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+
T Consensus 1272 ~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1272 ETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIA 1351 (1522)
T ss_pred CCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcc
Confidence 23455679999999999999999877778999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHH
Q 000511 1286 NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1286 ~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~ 1363 (1455)
+++++++|++|++|||||+||+||||+||||+++++|+|+|+|+++|+++++++++ ||||.++|+|.|||||||||+|
T Consensus 1352 ~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1352 KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred ccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
|||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++++||||+|||+|+|+|+|+|+||+++ +
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~ 1510 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-R 1510 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997 5
Q ss_pred cHHHHHHHhhCC
Q 000511 1444 SVFSSFVRASTM 1455 (1455)
Q Consensus 1444 s~f~~l~~~~g~ 1455 (1455)
|.|++|++++|.
T Consensus 1511 ~~f~~l~~~~g~ 1522 (1522)
T TIGR00957 1511 GIFYSMAKDAGL 1522 (1522)
T ss_pred CHHHHHHHHcCC
Confidence 899999999884
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-206 Score=2092.58 Aligned_cols=1423 Identities=30% Similarity=0.518 Sum_probs=1174.8
Q ss_pred cCCCCc-cccccc------cccchhhhHHHHHhhhhhHHH-HHhhhc-c-cccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 000511 4 ICPNSP-FVWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-I-TQRSPRQNQRINLMEKVFLHILPLVGACLS 73 (1455)
Q Consensus 4 ~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 73 (1455)
+|+... ..|.+. .+.+||++..+...++..... ..+.+- . ..++...+..+..+.|+.+.++++...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEP 88 (1495)
T ss_pred hcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence 785322 245543 356999995444444433332 211111 1 012222222235666666655554433333
Q ss_pred HHHHHHH---HHHhcc-CccccchH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhHHh
Q 000511 74 SVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLVTF 145 (1455)
Q Consensus 74 ~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt~~ 145 (1455)
.+..... ..+... .....+.. +++.++..++++.+..+.+.||.|+.+++..+.+||++. +++.++. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 164 (1495)
T PLN03232 89 VLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVL----P 164 (1495)
T ss_pred HHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHH----H
Confidence 3221110 111111 11122333 666788888888777899999999999999999999999 7777762 1
Q ss_pred hhhhhhh---hhhHHHHHHHHHHHHHHHHHHhhccccCcccccc---ccccc-----C-CCCCCCCCCCCCChhHHHHHH
Q 000511 146 SSFEVLK---CLKEICLVLLDIMFGISINIIRVKRASSRRSSIE---ESLLS-----V-DGDVEEDCNTDSSYWDLMAFK 213 (1455)
Q Consensus 146 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~-----~-~~~~~~~~e~~~~~~s~~~f~ 213 (1455)
..+.... .. ....+++.+.+.+.. ....|..++..... .+..+ . +...+++||+++|+|||++||
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~ 241 (1495)
T PLN03232 165 LKNSINRTALYL-CISSRCCQALFGILL--LVYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFS 241 (1495)
T ss_pred HHHHHhccccce-ehhHHHHHHHHHHHH--HHhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHH
Confidence 1111111 11 122222233222221 11123222211111 01111 0 001226899999999999999
Q ss_pred hhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 000511 214 SIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFA 293 (1455)
Q Consensus 214 Wl~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 293 (1455)
|++|++++||+++|+.+|||+|+++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++.+++.++
T Consensus 242 w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 319 (1495)
T PLN03232 242 WMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES-R-RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFV 319 (1495)
T ss_pred HHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999865 2 3568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhH
Q 000511 294 GPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGE 373 (1455)
Q Consensus 294 ~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~ 373 (1455)
+|++++++++++++++..+.++.+++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++|+
T Consensus 320 ~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~ 399 (1495)
T PLN03232 320 GPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGK 399 (1495)
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHH
Confidence 99999999999976444456788888888888888999889999999999999999999999999999998888889999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 374 IQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI 453 (1455)
Q Consensus 374 i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~ 453 (1455)
++|+|++|++++.+....+|.+|..|++++++++++|+.+|++++++++++++++|++.++++++++.++++++.+|+|.
T Consensus 400 i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~ 479 (1495)
T PLN03232 400 VTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRV 479 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHH
Q 000511 454 RRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFT 533 (1455)
Q Consensus 454 ~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~~ft 533 (1455)
+.++|+++|||+||+||||+.+.+++++.|++|++..++.....++..+++...|.++++++|++|.+.++.+|++.+|+
T Consensus 480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~ 559 (1495)
T PLN03232 480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFT 559 (1495)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999888888777777888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEcceEeecC
Q 000511 534 CLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYC 613 (1455)
Q Consensus 534 ~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~ 613 (1455)
++++++.+..|+..+|..+..+.++++|++||++||+.++..+... .+. ......|+++|++|+|+.
T Consensus 560 ~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~~---------~~~~~~I~~~~vsF~y~~ 626 (1495)
T PLN03232 560 SLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PPL---------QPGAPAISIKNGYFSWDS 626 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CCc---------CCCCCcEEEEeeEEEcCC
Confidence 9999999999999999999999999999999999998665321100 000 012346999999999985
Q ss_pred CCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE-EEEcCcEEEEcCCCCCCCcCHHHHhccCC
Q 000511 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGK 692 (1455)
Q Consensus 614 ~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~-i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~ 692 (1455)
.++ +++|+|+||++++|++++|+||+|||||||+++|+|+++|++|. +.++++||||+|+|||||+||||||+||+
T Consensus 627 ~~~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 627 KTS---KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred CCC---CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCC
Confidence 322 34599999999999999999999999999999999999999975 56789999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHh
Q 000511 693 NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772 (1455)
Q Consensus 693 ~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~ 772 (1455)
++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++++
T Consensus 704 ~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~ 783 (1495)
T PLN03232 704 DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783 (1495)
T ss_pred ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhhh-hcccccc-h-h
Q 000511 773 IMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE-MRTNASS-A-N 849 (1455)
Q Consensus 773 ~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~ 849 (1455)
+.+ .++++|+|+|||+++.++.||+|++|++|+++++|+++|+.+..+.+..+..+........+.. ....... . .
T Consensus 784 l~~-~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1495)
T PLN03232 784 MKD-ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPT 862 (1495)
T ss_pred hhh-hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccc
Confidence 766 5688999999999999999999999999999999999999876544433221111000000000 0000000 0 0
Q ss_pred hhhhhhcc---cccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 000511 850 KQILLQEK---DVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTT 925 (1455)
Q Consensus 850 ~~~~~~~~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~ 925 (1455)
......+. +..+..+......++|+++.|.+++++|++|+++.| ++.+++++++.++.++...++++|+++|.+..
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~ 942 (1495)
T PLN03232 863 VTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQS 942 (1495)
T ss_pred ccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000000 000000011124456778899999999999999865 34444555566677788888999999998753
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhh
Q 000511 926 GSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1005 (1455)
Q Consensus 926 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~i 1005 (1455)
.. ......+|+++|++++++..++.+++.+.+...+.+++.++|++++++++++|++||+++|+|+++|||++|++.+
T Consensus 943 ~~--~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~i 1020 (1495)
T PLN03232 943 TP--KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDI 1020 (1495)
T ss_pred CC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHH
Confidence 21 1223467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchH
Q 000511 1006 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1085 (1455)
Q Consensus 1006 d~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~ 1085 (1455)
|+.++..+..++..++.+++.++++++..++++++++|+.++++.++.+|.+++|++++.+..+++|+++++.|+++|+.
T Consensus 1021 d~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~ 1100 (1495)
T PLN03232 1021 DRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLS 1100 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChH
Confidence 99999999999988888888888887777888888888888888889999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHH
Q 000511 1086 TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1165 (1455)
Q Consensus 1086 tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~ 1165 (1455)
|||+|+++++|.+++.+..|.+++..+.....++|+..++++++++++.+.+...+.. .+........++.+|++++|+
T Consensus 1101 tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~ 1179 (1495)
T PLN03232 1101 SIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYT 1179 (1495)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999889999999999887765554444444332 111101112356788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEE
Q 000511 1166 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTI 1243 (1455)
Q Consensus 1166 ~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I 1243 (1455)
..+..+++++++.+.++|+.++|+||+.++.+.|+|+.. ....++++||.+|.|+|+||+|+|+++.++||+|+||+|
T Consensus 1180 ~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I 1259 (1495)
T PLN03232 1180 LNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFV 1259 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEE
Confidence 999999999999999999999999999999998887532 222345679999999999999999887778999999999
Q ss_pred eCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChH
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1323 (1455)
Q Consensus 1244 ~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ 1323 (1455)
+||||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||++|+|||||||||+++++|+
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sde 1339 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA 1339 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC
Q 000511 1324 KIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401 (1455)
Q Consensus 1324 ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~ 1401 (1455)
|+|+|+++++++++++++ ||||.++|+|.|||||||||+||||||+|+|+|||||||||+||.+||+.||++|++.++
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~ 1419 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK 1419 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhCC
Q 000511 1402 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455 (1455)
Q Consensus 1402 ~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g~ 1455 (1455)
+||+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|++++|.
T Consensus 1420 ~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1420 SCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999888899999998873
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-195 Score=1975.58 Aligned_cols=1229 Identities=27% Similarity=0.459 Sum_probs=1073.8
Q ss_pred CCCCCCChhHHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCcchHHHHHHHHhHhHH
Q 000511 199 DCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 278 (1455)
Q Consensus 199 ~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~ 278 (1455)
+||+++|+|||++|||+||++++||+++|+.+|||+|+++++++.+.++|++.|+++..++.++++|+++++++|+|+++
T Consensus 4 ~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~~ 83 (1490)
T TIGR01271 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRFV 83 (1490)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999987652334568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 279 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS--GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQ 356 (1455)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~ 356 (1455)
..++++++.+++.+++|+++++++++++... ..+.+|++++++++++++.+++.+++.|...+++.++|++|...||+
T Consensus 84 ~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~ 163 (1490)
T TIGR01271 84 FYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYK 163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996422 23568899999999999999999999999999999999999999999
Q ss_pred HHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 357 KCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 436 (1455)
Q Consensus 357 K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~ 436 (1455)
|+|+++....++.++|+++|+|++|++++..+...+|.+|..|+++++++++||+++|+++++|++++++++|++.++++
T Consensus 164 K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~ 243 (1490)
T TIGR01271 164 KTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQ 243 (1490)
T ss_pred HHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 437 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTF 516 (1455)
Q Consensus 437 ~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 516 (1455)
++.+.++++++.+|+|++.++|+|+|||+||+||||+.|.+++++.|++|++..++..++..+..+++...|.++++++|
T Consensus 244 ~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 323 (1490)
T TIGR01271 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSV 323 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HHHHHhCCCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccC
Q 000511 517 GLFALMGHQLDAAMVFTCLALFNSLISPLN-SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNF 595 (1455)
Q Consensus 517 ~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~ 595 (1455)
++|.+.++ ++++.+||+++++++++.|+. .+|..+..+.++.+|++||++||..+|.++...
T Consensus 324 ~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---------------- 386 (1490)
T TIGR01271 324 VPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---------------- 386 (1490)
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----------------
Confidence 99988755 789999999999999999985 799999999999999999999998766432100
Q ss_pred CCCCceEEEEcceEeecCCC----------------c-c-----------cccccceeceeEecCCcEEEEEcCCCCcHH
Q 000511 596 NSKDMAVIMQDATCSWYCNN----------------E-E-----------EQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647 (1455)
Q Consensus 596 ~~~~~~i~~~~~sf~w~~~~----------------~-~-----------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKS 647 (1455)
+.....++++|++|+|+... . . ..+++|+|+||+|++|++++|+||||||||
T Consensus 387 ~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 387 NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 01123588999999996310 0 0 013579999999999999999999999999
Q ss_pred HHHHHHhcCccCCCcEEEEcCcEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000511 648 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1455)
Q Consensus 648 tll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g 727 (1455)
|||++|+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|.+|++|
T Consensus 467 TLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g 546 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546 (1490)
T ss_pred HHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeE
Q 000511 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1455)
Q Consensus 728 ~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1455)
.+|||||||||+||||+|++|++|||||||||||+++++++++.|+.+ +.+++|+|+|||+++.++.||+|++|++|++
T Consensus 547 ~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~-~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK-LMSNKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999987655 5678999999999999999999999999999
Q ss_pred EEecCHHHHHhccccCccccc--------------------------c--c-----c-hh------hhhhhhhh------
Q 000511 808 KWIGSSADLAVSLYSGFWSTN--------------------------E--F-----D-TS------LHMQKQEM------ 841 (1455)
Q Consensus 808 ~~~g~~~~l~~~~~~~~~~~~--------------------------~--~-----~-~~------~~~~~~~~------ 841 (1455)
++.|+++++......+..... + . + .. ......+.
T Consensus 626 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1490)
T TIGR01271 626 YFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSII 705 (1490)
T ss_pred EEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999998653211100000 0 0 0 00 00000000
Q ss_pred -------------------------c--ccccch------hh---------------------------------hh---
Q 000511 842 -------------------------R--TNASSA------NK---------------------------------QI--- 852 (1455)
Q Consensus 842 -------------------------~--~~~~~~------~~---------------------------------~~--- 852 (1455)
. .....+ .. ..
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1490)
T TIGR01271 706 LNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRG 785 (1490)
T ss_pred ccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence 0 000000 00 00
Q ss_pred -hhhcc--cc--------------c-------C-CC-------c---c---hhhHHHHHHHhcCcchhHHHHHHhhhhhH
Q 000511 853 -LLQEK--DV--------------V-------S-VS-------D---D---AQEIIEVEQRKEGRVELTVYKNYAKFSGW 894 (1455)
Q Consensus 853 -~~~~~--~~--------------~-------~-~~-------~---~---~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 894 (1455)
...+. +. . . .. + + .....++|+++.|.+++++|++|+++.|+
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~ 865 (1490)
T TIGR01271 786 ENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRN 865 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCc
Confidence 00000 00 0 0 00 0 0 01124456778899999999999998765
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccC-----C-CCC-----------CcchhhH-HHHHHHHHHHHHHHHHHH
Q 000511 895 -FITLVICLSAILMQASRNGNDLWLSYWVDTTG-----S-SQT-----------KYSTSFY-LVVLCIFCMFNSFLTLVR 955 (1455)
Q Consensus 895 -~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~-~~~-----------~~~~~~~-l~~~~~~~~~~~~~~~~~ 955 (1455)
..+++++++.++.+++..++++|+.+|..... . .+. .....+| +.+|+++.++..++.+++
T Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1490)
T TIGR01271 866 LVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFR 945 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 44444456667778899999999999875210 0 000 0011233 445555555566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000511 956 AFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV 1035 (1455)
Q Consensus 956 ~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 1035 (1455)
.+++...+.+++.++|++++++++++|++||+++|+|+++|||++|++.+|+.+|..+..++..++.+++.++++++..|
T Consensus 946 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p 1025 (1490)
T TIGR01271 946 GLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP 1025 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1036 FFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1115 (1455)
Q Consensus 1036 ~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~ 1115 (1455)
+++++++|++++++.++++|.+++|++++++..+++|+++|+.|+++|+.|||+||++++|.+++.+..+.+++..+...
T Consensus 1026 ~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1490)
T TIGR01271 1026 YIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000511 1116 TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1195 (1455)
Q Consensus 1116 ~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~ 1195 (1455)
+.++|+..++++++.+++..++++++. . ....+|.+|++++|++.+...++++++.+.++++.+.|++|+.+|
T Consensus 1106 ~~~~wl~~~~~~i~~~~~~~~~~l~~~-~------~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1178 (1490)
T TIGR01271 1106 STLRWFQMRIDIIFVFFFIAVTFIAIG-T------NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKF 1178 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H------hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876544443333321 1 123467789999999999999999999999999999999999999
Q ss_pred hcCCcccccc----------------CCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChH
Q 000511 1196 MDVPQEELCG----------------YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259 (1455)
Q Consensus 1196 ~~~~~e~~~~----------------~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGK 1259 (1455)
.+.|+|+... ...+++.||..|.|+|+||+|+|+++.++||+|+||+|+|||||||||||||||
T Consensus 1179 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1179 IDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred hcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCH
Confidence 9887764211 012345799999999999999999877899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHH
Q 000511 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339 (1455)
Q Consensus 1260 STLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~ 1339 (1455)
|||+++|+|+++ ++|+|.|||+||++++++++|++|++|||||+||+||||+||||++.++|+++|+||++++++++++
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHH
Confidence 999999999998 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh
Q 000511 1340 AV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417 (1455)
Q Consensus 1340 ~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~ 1417 (1455)
++ ||||.++|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++.+
T Consensus 1338 ~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred hCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 98 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1418 MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1418 ~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
||||+|||+|+|+|+|+|++|++ ++|.|++|+++++
T Consensus 1418 ~DrIlvL~~G~ivE~g~p~~Ll~-~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1418 CQQFLVIEGSSVKQYDSIQKLLN-ETSLFKQAMSAAD 1453 (1490)
T ss_pred CCEEEEEECCEEEEeCCHHHHHc-CCcHHHHHHHHhC
Confidence 99999999999999999999997 4789999999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-184 Score=1875.57 Aligned_cols=1249 Identities=32% Similarity=0.529 Sum_probs=1066.2
Q ss_pred CCCCCCCChhHHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHH----------HHHhhh----------
Q 000511 198 EDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSC----------WQAQRS---------- 257 (1455)
Q Consensus 198 ~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~----------w~~~~~---------- 257 (1455)
+.||+++||+.|+++.|++|++.+..|..|+.+|||+--.+.++-++..++.+. |+-...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 469999999999999999999999999999999999888887775554444332 421000
Q ss_pred -------------------------------c------------------------------------------------
Q 000511 258 -------------------------------C------------------------------------------------ 258 (1455)
Q Consensus 258 -------------------------------~------------------------------------------------ 258 (1455)
+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCcchHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHH
Q 000511 259 ---------NCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSILK 328 (1455)
Q Consensus 259 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~~ 328 (1455)
.++..+|+++++++|++.++..++++++.+++.+++|++++.++++++++. ....|++++++++++++++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 012347999999999999999999999999999999999999999997633 3345788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 329 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERS--EFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVAL 406 (1455)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~--~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~ 406 (1455)
+++.++|.|...+.+.++|++|...+|+|+++++..... +.++|+++|+|++|++++..+..++|.+|..|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887654 568899999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHH
Q 000511 407 YLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSE 486 (1455)
Q Consensus 407 ~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~E 486 (1455)
++||+.+|+++++|++++++++|++.++++++.+.++++++++|+|++.++|+++|||+||+||||+.|.+++++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 487 VKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 566 (1455)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~ 566 (1455)
++.+++..+...+..+++.++|.++.+++|++|.+.+++||++.+||+++++++++.|+.++|..++.+.++.+|++||+
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~ 538 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIS 538 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCchh----hhh-----hcCCCCcc-----cCC---------------------------------CccCCCCC
Q 000511 567 RFLGCSEYKHE----LEQ-----AANSPSYI-----SNG---------------------------------LSNFNSKD 599 (1455)
Q Consensus 567 ~fL~~~e~~~~----~~~-----~~~~~~~~-----~~~---------------------------------~~~~~~~~ 599 (1455)
+||..+|.... ... ....+... .+. ........
T Consensus 539 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1560)
T PTZ00243 539 TFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPS 618 (1560)
T ss_pred HHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 99987763210 000 00000000 000 00000112
Q ss_pred ceEEEEcceEeecCCCc----------------------------------ccccccceeceeEecCCcEEEEEcCCCCc
Q 000511 600 MAVIMQDATCSWYCNNE----------------------------------EEQNVVLNQVSLCLPKGSLVAVIGEVGSG 645 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~----------------------------------~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 645 (1455)
..+.++|++|+|+.... ...+++|+|+||++++|++++|+||||||
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsG 698 (1560)
T PTZ00243 619 PSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSG 698 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCc
Confidence 34677788887652100 01134799999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCcEEEEcCcEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccC
Q 000511 646 KSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725 (1455)
Q Consensus 646 KStll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~ 725 (1455)
||||+++|+|+++|++|+|.++++||||+|+||++++||+|||.|+.++|+++|++++++|++++|++.+|+|++|.+|+
T Consensus 699 KSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~ 778 (1560)
T PTZ00243 699 KSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778 (1560)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCC
Q 000511 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 805 (1455)
Q Consensus 726 ~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 805 (1455)
+|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+ ..+++|+|++||+++.++.||+|++|++|
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987655 45689999999999999999999999999
Q ss_pred eEEEecCHHHHHhccccCcccccccchh----hhhhhhh---hccccc---c-h---hhhhhh-hcccccCCCcchhhHH
Q 000511 806 QVKWIGSSADLAVSLYSGFWSTNEFDTS----LHMQKQE---MRTNAS---S-A---NKQILL-QEKDVVSVSDDAQEII 870 (1455)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~---~-~---~~~~~~-~~~~~~~~~~~~~~~~ 870 (1455)
++.++|+++++..... +..+....... ......+ ...... . . ..+... ...+.........+..
T Consensus 858 ~i~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 936 (1560)
T PTZ00243 858 RVEFSGSSADFMRTSL-YATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLM 936 (1560)
T ss_pred EEEEecCHHHHHhChH-HHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 9999999999875421 11111000000 0000000 000000 0 0 000000 0000000011122345
Q ss_pred HHHHHhcCcchhHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHH
Q 000511 871 EVEQRKEGRVELTVYKNYAKFSGWFI-TLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNS 949 (1455)
Q Consensus 871 ~~e~~~~g~v~~~~y~~y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 949 (1455)
++|+++.|.++|++|++|++..|... ++.+++..++.+++..++++|+++|++... ......|+++|+++.++..
T Consensus 937 ~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 937 TREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF----KLSAATYLYVYLGIVLLGT 1012 (1560)
T ss_pred hHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcccHHHHHHHHHHHHH
Confidence 66777889999999999999876443 334444455667788889999999987431 1223468888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhh
Q 000511 950 FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVV 1029 (1455)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~ 1029 (1455)
++.+++.+.....+.++++++|++++++++++|++|||++++|+++|||++|++.+|+.++..+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHH
Q 000511 1030 LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109 (1455)
Q Consensus 1030 ~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~ 1109 (1455)
+++..|+++++++|+.++++.++++|.+.+|++++.+..+++|+++++.|+++|+.|||+|++++.|.+++.+..|.+.+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88889988888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1110 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSL 1189 (1455)
Q Consensus 1110 ~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~ 1189 (1455)
..+.....++|+..+++++.++++.+++++.+..... ..+..++|.++++++|+..+..+++++++.+.++|+.+.|+
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTML--RATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876554443333322110 11234689999999999999999999999999999999999
Q ss_pred HHHHHhhcC-Ccccccc-------------------------CCCCC---CCCCCCccEEEEEEEEEecCCCCcceeeee
Q 000511 1190 ERVLEYMDV-PQEELCG-------------------------YQSLS---PDWPFQGLIEFQNVTMRYKPSLPAALHDIN 1240 (1455)
Q Consensus 1190 ~Ri~~~~~~-~~e~~~~-------------------------~~~~~---~~wp~~g~I~f~nvs~~Y~~~~~~vL~~is 1240 (1455)
+|+.+|.+. |+|+... ...++ +.||..|.|+|+||+|+|+++.++||+|||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vs 1330 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVS 1330 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecce
Confidence 999999964 3332100 01111 235567999999999999887778999999
Q ss_pred EEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCC
Q 000511 1241 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1320 (1455)
Q Consensus 1241 l~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~ 1320 (1455)
|+|+||||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||+||+||||+||||++++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEA 1410 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccC-CCEEEEeccCcCCCHHHHHHHHHHHH
Q 000511 1321 DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS-SKVLCLDECTANVDAQTASILQNAIS 1397 (1455)
Q Consensus 1321 ~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~-~~ILlLDEaTS~lD~~te~~I~~~i~ 1397 (1455)
+|+|+|+|+++|+++++++++ ||||.++|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|+
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999999999999999996 89999999999999999999999999
Q ss_pred HhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1398 SECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1398 ~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
+.|++||||+||||++++.+||||+|||+|+|+|+|+|+||+++++|.|++|++.+|
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999987889999999876
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-146 Score=1374.55 Aligned_cols=1156 Identities=21% Similarity=0.265 Sum_probs=849.6
Q ss_pred chHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCC------CchhHHHHHHHHHHHHHHHHHHH-H
Q 000511 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLL---NKLIKFLQQGS------GHLDGYVLAIALGLTSILKSFFD-T 333 (1455)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll---~~li~~~~~~~------~~~~g~~l~~~l~~~~~~~~~~~-~ 333 (1455)
++++-+..+-++++++..+..++..+.+..+|++. .++.+.+.... ....-.++.+.+.+..++.+++. .
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556777777777788888888888755 34444433311 01111111122222222222222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 000511 334 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-----SFHDAWSLPFQIGVALYL 408 (1455)
Q Consensus 334 ~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-----~~~~~~~~pl~i~i~~~l 408 (1455)
.+.+...|...++|.... +..||.+.+.++....|++.+-|+.|+++|+++.. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl----~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYL----KAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666555 55566777788878889999999999999998543 334333333334444433
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHH
Q 000511 409 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVK 488 (1455)
Q Consensus 409 L~~~lg~a~l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~ 488 (1455)
.|++. ++.+.+..++.......++.+.+...+.+++..+.-+...|++++||+|-.|+.|+...++..+.-+.-.+
T Consensus 170 -~W~Lt---lv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 -GWKLT---LVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred -HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 33332 33334444444556677888888888888888899999999999999999999999888887665444444
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 489 HLSTRKYLDAWCVFFW--ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 566 (1455)
Q Consensus 489 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~ 566 (1455)
...+......+...+. .+.......+|||..++..+..+++.+|+.+...-.-...|.+....++.+..|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 4444433333332222 12223445678887777788899999999886666667788888899999999999999999
Q ss_pred HHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcH
Q 000511 567 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 646 (1455)
Q Consensus 567 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGK 646 (1455)
+-++.....+.... . + .......+.|+++|+.|+||++++. ++|+|+||+||+|+.+++||||||||
T Consensus 326 ~~i~~~~~i~~~~~-~--------~-~~~~~~~g~ief~nV~FsYPsRpdv---~Il~g~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSK-G--------G-RVLSSIKGEIEFRNVCFSYPSRPDV---KILKGVSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred HHhcCCCCCCcccc-c--------C-CcccccccceEEEEEEecCCCCCcc---hhhCCeEEEeCCCCEEEEECCCCCCH
Confidence 98865432221110 0 0 0112356789999999999987543 45999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHH
Q 000511 647 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDI 712 (1455)
Q Consensus 647 Stll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di 712 (1455)
||++++|.|.|+|++|+|.++| +||.|+|+|.||++||+|||.||+| .+.++..++++....++.+
T Consensus 393 ST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi 472 (1228)
T KOG0055|consen 393 STLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFI 472 (1228)
T ss_pred HHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHH
Confidence 9999999999999999999987 5999999999999999999999985 4678888999999999999
Q ss_pred hhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccc
Q 000511 713 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 792 (1455)
Q Consensus 713 ~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~ 792 (1455)
..+|+|++|.+||+|..|||||||||||||||.++|+||||||||||||+++++.+ +.++.. ..+|+|.|+|+||++.
T Consensus 473 ~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~V-q~ALd~-~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 473 LKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVV-QEALDK-ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHH-HHHHHH-hhcCCeEEEEeeehhh
Confidence 99999999999999999999999999999999999999999999999999977654 454544 7789999999999999
Q ss_pred cccCCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhh-hh----hcccccch--hhhhhhhcccc--cCCC
Q 000511 793 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQK-QE----MRTNASSA--NKQILLQEKDV--VSVS 863 (1455)
Q Consensus 793 l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~--~~~~~~~~~~~--~~~~ 863 (1455)
+++||+|++|++|+|+|.|+|+||++..+.+.++...++.....+. ++ .+....+. ........+.. ....
T Consensus 551 IrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~ 630 (1228)
T KOG0055|consen 551 IRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLL 630 (1228)
T ss_pred hhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccc
Confidence 9999999999999999999999999888777665322211110000 00 00000000 00000000000 0000
Q ss_pred --cchhhHHHHHHHhcCcchhHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC---CCcchhh
Q 000511 864 --DDAQEIIEVEQRKEGRVELTVYKNYAKF--SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQ---TKYSTSF 936 (1455)
Q Consensus 864 --~~~~~~~~~e~~~~g~v~~~~y~~y~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~---~~~~~~~ 936 (1455)
...++..++...... ....++.-++. ..|..+++..+..++..+....-.+.+++..+...... .......
T Consensus 631 ~~~~~~e~~~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~ 708 (1228)
T KOG0055|consen 631 SVKPEGEDPEEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA 708 (1228)
T ss_pred ccccccccccccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 000000000000000 11112233331 24555555544444444433333333333222111011 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--CChhhHHHHHHhhhhhhhcchhHHHH
Q 000511 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILN 1014 (1455)
Q Consensus 937 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~ 1014 (1455)
|..+|++++++..++.++..+++...+.+...++|.++|++++++++.|||. +. |.+.+|+++|...+...+...+.
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 56 99999999999999999999898
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhchhHhHHHHhhcchHHHHhc
Q 000511 1015 ILLANFVGLLGIAVVLSYVQVFFL---LLLVPFWFIYSKLQFFYRS-TSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1090 (1455)
Q Consensus 1015 ~~~~~~~~~l~~~~~~~~~~~~~~---l~~~p~~~~~~~i~~~y~~-~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf 1090 (1455)
.++.++..++..+++.++..|-++ +++.|++++..+.+..+.. ..++.+... ........|++.+++||++|
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~----~ea~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAY----EEASKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHH
Confidence 888888888877777777777654 4566777766666655443 333333211 12234578999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHH
Q 000511 1091 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1170 (1455)
Q Consensus 1091 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1170 (1455)
+.|++|.+.|.+.++...+..... ..|.++...+-.+++.+.-++...++.. -...+.+++..+...+.-+..-..
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~-Li~~g~~~~~~~~~vf~~l~~ta~ 939 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGAR-LISNGEMTFEDVFRVFMALSFTAM 939 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHhcCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999888877766544 3344444333333322222222221111 111344556555554444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEE
Q 000511 1171 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQV 1249 (1455)
Q Consensus 1171 ~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~Gekv 1249 (1455)
.+.......++..++..|+.+++++++.+++-...........+.+|.|+|+||+|+||.. ..+||+|+||+|++||.+
T Consensus 940 ~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTv 1019 (1228)
T KOG0055|consen 940 ALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTV 1019 (1228)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEE
Confidence 6677888889999999999999999988774321111111122468999999999999733 236999999999999999
Q ss_pred EEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHH
Q 000511 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSV 1328 (1455)
Q Consensus 1250 gIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~a 1328 (1455)
|+||||||||||++.+|.|+|+|++|.|.|||.||+++++++||++|++|+|||.||++||||||.++. ..+.+||.+|
T Consensus 1020 ALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1020 ALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA 1099 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999983 4689999999
Q ss_pred HHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEE
Q 000511 1329 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406 (1455)
Q Consensus 1329 L~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI 1406 (1455)
++.++.++||.++ ||||.|||+|.+||||||||||||||++|||||||||||||+||.++|+.+|++|++...+||+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1407 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1407 ~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
+|||||+||++||.|+|+++|+|+|.|+|++|++ ++|.|++|++.+.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 9999999999999999999999999999999999 5689999998754
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-134 Score=1366.85 Aligned_cols=1163 Identities=17% Similarity=0.210 Sum_probs=848.6
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1455)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (1455)
+++-.-+.+++.++...++.++..++....|+++.++++.+..... ...+++.++++.++..++...+.+...+++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN---VNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556667777788888888888899999999987642211 1123334445556666677777888889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHH
Q 000511 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY-LLYTQVKFAFVSGLA 422 (1455)
Q Consensus 345 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~-lL~~~lg~a~l~g~~ 422 (1455)
++...+...+|+|.++++...++..+.|++.+.++.|++.+...+. .+..+...++.++.++. +++....++. +.++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lal-v~l~ 205 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTL-CITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 9999999999999999999888888889999999999999887543 34455555554444332 3333333332 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1455)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1455)
++.+++.+..++.+++.+..++..+..++..+.+.|.++||++||.|+.|+.+.+++.+..++..+...+.....++...
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445667788888888888888899999999999999999999999999998887655544444444444444322
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000511 503 FWATT--PTLFSLFTFGLFALMGH--------QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 572 (1455)
Q Consensus 503 ~~~~~--~~~~~~~~f~~~~~~~~--------~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 572 (1455)
+.... ...+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.+.++.+
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~ 365 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRK 365 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222 22345567888877653 588898888765555545566666667889999999999999999765
Q ss_pred CCchhhhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHH
Q 000511 573 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 652 (1455)
Q Consensus 573 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~ 652 (1455)
+..+.... ... .+ ....|+++|++|+|+.+++ .++|+|+||+|++||+++|+||||||||||+++
T Consensus 366 ~~~~~~~~--~~~---------~~-~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 366 PLVENNDD--GKK---------LK-DIKKIQFKNVRFHYDTRKD---VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred CCCCCCCC--Ccc---------CC-CCCcEEEEEEEEEcCCCCC---CceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 42211000 000 01 1136999999999975422 246999999999999999999999999999999
Q ss_pred HhcCccCCCcEEEEc-C-------------cEEEEcCCCCCCCcCHHHHhccCCC-------------------------
Q 000511 653 ILGEMMLTHGSIHAS-G-------------SIAYVPQVPWILSGTIRDNILFGKN------------------------- 693 (1455)
Q Consensus 653 l~g~~~~~~G~i~~~-~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~------------------------- 693 (1455)
|+|.++|++|+|.++ | .||||+|+|.+|++||+|||.+|..
T Consensus 431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1466)
T PTZ00265 431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK 510 (1466)
T ss_pred HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence 999999999999994 3 4899999999999999999998741
Q ss_pred ---------------------------------CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHH
Q 000511 694 ---------------------------------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740 (1455)
Q Consensus 694 ---------------------------------~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRval 740 (1455)
.++++..++++.+++++.+..+|+|++|.+|++|.+|||||||||+|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI 590 (1466)
T PTZ00265 511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590 (1466)
T ss_pred cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence 23456778888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccccCCEEEEEeCC--------------
Q 000511 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKG-------------- 805 (1455)
Q Consensus 741 ARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G-------------- 805 (1455)
|||++++|+|||||||||+||+++++.+.+. +.... .+++|+|+|||+++.+..||+|++|++|
T Consensus 591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~-L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 591 ARAIIRNPKILILDEATSSLDNKSEYLVQKT-INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999988776 43311 2478999999999999999999999886
Q ss_pred ---------------------------------eEEEecCHHHHHh-ccccCcccccccchhhhhh-----hhhh--ccc
Q 000511 806 ---------------------------------QVKWIGSSADLAV-SLYSGFWSTNEFDTSLHMQ-----KQEM--RTN 844 (1455)
Q Consensus 806 ---------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~-----~~~~--~~~ 844 (1455)
+|+|+|+|+|+++ ..+.+..+........... .... ...
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 5999999999987 4555444332111000000 0000 000
Q ss_pred c-c-ch-h---hhhhh---hccc------ccCCCcch-hhHHHH------HHH--hcCcc--hhHHHHHHhhhhhHHHHH
Q 000511 845 A-S-SA-N---KQILL---QEKD------VVSVSDDA-QEIIEV------EQR--KEGRV--ELTVYKNYAKFSGWFITL 898 (1455)
Q Consensus 845 ~-~-~~-~---~~~~~---~~~~------~~~~~~~~-~~~~~~------e~~--~~g~v--~~~~y~~y~~~~g~~~~~ 898 (1455)
. . .. . ..... .+.. .....++. .+...+ ++. ..... .+..+..+++...+. ++
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 828 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD-VT 828 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH-HH
Confidence 0 0 00 0 00000 0000 00000000 000000 000 00001 111222233222222 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 899 VICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 977 (1455)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 977 (1455)
+.++++++..++....++.++.+++.... .........|.+++++++++..++.+++.++..+.+.+...+++.+++++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ 908 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN 908 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444444555555566666542211 00111234677777888888888899999999999999999999999999
Q ss_pred HhcCccccccc--CChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 978 IVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1055 (1455)
Q Consensus 978 vl~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y 1055 (1455)
++++|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++++..|.++++++|+.++........
T Consensus 909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 988 (1466)
T PTZ00265 909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR 988 (1466)
T ss_pred HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 8899999999999999999888888888888888888888888888877766655544332221111
Q ss_pred HH--HHHHHHHH-------------HHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1056 RS--TSRELRRL-------------DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1120 (1455)
Q Consensus 1056 ~~--~sr~l~~l-------------~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w 1120 (1455)
.+ ..++.++. +.+..+.....+.|++.|++|||+|+.|+++.++|.+..+...+..........+
T Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1466)
T PTZ00265 989 ARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068 (1466)
T ss_pred HHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111 2223445677899999999999999999999999999998887766655444333
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000511 1121 LSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1199 (1455)
Q Consensus 1121 l~~~l~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~ 1199 (1455)
+....+.+..+...++.++ ..+. ..+..+.|.+..++.+.+.....+..+...+.+++.+..+.+|+.++++.+
T Consensus 1069 ~~~~~~~~~~~~~~~~~~~G~~lv-----~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~ 1143 (1466)
T PTZ00265 1069 LWGFSQSAQLFINSFAYWFGSFLI-----RRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRK 1143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3333333322211111111 1111 123456776655555544444556778888999999999999999999876
Q ss_pred ccccccC-CCCC--CCCCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC---
Q 000511 1200 QEELCGY-QSLS--PDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--- 1272 (1455)
Q Consensus 1200 ~e~~~~~-~~~~--~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--- 1272 (1455)
++..... .... ...+.+|.|+|+||+|+|++. ..+||+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1144 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~ 1223 (1466)
T PTZ00265 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223 (1466)
T ss_pred CcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccc
Confidence 5421111 1111 112346889999999999743 24799999999999999999999999999999999999999
Q ss_pred ---------------------------------------------------CCceEEECCEeCCCCChHHHhcccEEEeC
Q 000511 1273 ---------------------------------------------------CGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1455)
Q Consensus 1273 ---------------------------------------------------~~G~I~IdG~di~~i~~~~lR~~i~~VpQ 1301 (1455)
++|+|+|||+||++++++++|++|+||||
T Consensus 1224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1303 (1466)
T PTZ00265 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ 1303 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC
Confidence 69999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1302 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1302 dp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
||+||+|||||||.++. ..+|+|+++|++.++++++|.++ ||||.|||+|.+|||||||||||||||+|+|+|||||
T Consensus 1304 ep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1304 EPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999885 47999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeC----CeE-EEeCChhHHhccCCcHHHHHHH
Q 000511 1379 ECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDH----GHL-VEQGNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~----G~i-ve~G~p~eLl~~~~s~f~~l~~ 1451 (1455)
||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+|+||+++++|.|++|++
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 9999999999999999999873 69999999999999999999999999 995 4999999999865689999998
Q ss_pred hh
Q 000511 1452 AS 1453 (1455)
Q Consensus 1452 ~~ 1453 (1455)
.+
T Consensus 1464 ~~ 1465 (1466)
T PTZ00265 1464 LA 1465 (1466)
T ss_pred hc
Confidence 65
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-89 Score=819.31 Aligned_cols=562 Identities=26% Similarity=0.363 Sum_probs=457.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 960 (1455)
Q Consensus 882 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 960 (1455)
+...+.|.+.-.+++...++ +.++......+.+.++...+|.... ............+..++.++.+++..++.+++.
T Consensus 135 ~~rl~~l~~~~~~~l~~a~~-~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~ 213 (716)
T KOG0058|consen 135 LKRLLGLLKPEWKWLVAAFV-LLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQ 213 (716)
T ss_pred HHHHHHHhchhHHHHHHHHH-HHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555544444433332 2233333344445555444332211 111222333455667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000511 961 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1040 (1455)
Q Consensus 961 ~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~ 1040 (1455)
+.+.+...++|..+|++++++.++|||.+.+|++++|++.|...+.+.++..+...+.+.+..++.+..+++.+|.+.++
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv 293 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLV 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred ---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1041 ---LVPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116 (1455)
Q Consensus 1041 ---~~p~~-~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1455)
.+|++ ++...+.++|++.+++.+ ++-+.......|.+.+++|||+|+.|+...++|.+.+++..+...+...
T Consensus 294 ~~i~~P~v~~~~~~yG~~~rklS~~~Q----~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 294 TLIVVPIVALVAKIYGKYLRKLSKQTQ----DALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 334445556666666554 4445556778999999999999999999999999988887665544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000511 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1455)
Q Consensus 1117 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~ 1196 (1455)
..-.+....++........+ ..++.+ ....+.+++|.+...+.|...+...+.++...|.++.+..+|.+|++|++
T Consensus 370 a~~~f~~~~~~~~~~~~~si---L~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSI---LFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHH---HHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 32222222333333221111 111111 12246788999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 000511 1197 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1455)
Q Consensus 1197 ~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1275 (1455)
|.+|.-... ....|. +.+|.|+|+||+|+|+.. ..+||||+||+|+|||.||+||||||||||++++|+|+|+|++|
T Consensus 446 dr~P~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 446 DRKPRIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccCCCCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 987754222 111222 568999999999999754 23699999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCC
Q 000511 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1352 (1455)
Q Consensus 1276 ~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~ 1352 (1455)
+|++||+||++++.++||++||+|.|||+||+|||||||.++.+ .+||||.+|.++++.++||.++ |+||.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 99999999999999999999999999999999999999988754 5899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEe
Q 000511 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432 (1455)
Q Consensus 1353 ~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1432 (1455)
.|||||||||||||||+|||+|||||||||+||.++|..+|++|.+..+++|||+|||||+||+.+|+|+|+|+|+|+|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHhccCCcHHHHHHHhhC
Q 000511 1433 GNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1433 G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
|+|+||+++++|.|++|++++.
T Consensus 684 G~h~eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 684 GTHDELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred ccHHHHhhCcccHHHHHHHHhc
Confidence 9999999999999999998753
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-81 Score=784.33 Aligned_cols=547 Identities=27% Similarity=0.393 Sum_probs=463.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000511 900 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 979 (1455)
Q Consensus 900 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 979 (1455)
+++..++.+......+++....+|..-.............++++.+++..++.+++.+++...+.|....+-.+++++++
T Consensus 159 v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll 238 (709)
T COG2274 159 VLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLL 238 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33455566666777777777776654222222333334455667778888999999999999999999999999999999
Q ss_pred cCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 980 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1059 (1455)
Q Consensus 980 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~s 1059 (1455)
+.|++||+++++|++++|+ +|++.|.+.+...+...+..+...+..++++.+.+|.++++.+..++++..+.....+..
T Consensus 239 ~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l 317 (709)
T COG2274 239 RLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317 (709)
T ss_pred cCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 578888888888877777777777777777777777766554444444433333333333
Q ss_pred HHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1060 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1139 (1455)
Q Consensus 1060 r~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1139 (1455)
|+..+...+..+...++..|++.|++|||+.+.|.++..++++..++..+..+.......|.+....++..+....+.++
T Consensus 318 ~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~ 397 (709)
T COG2274 318 RRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWF 397 (709)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555667789999999999999999999999999999999999999988888888777666655433222222
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccE
Q 000511 1140 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1219 (1455)
Q Consensus 1140 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1219 (1455)
.+... ..+..+.|.+..+......+.+++..++..|++++....+.+|+.+.++.|+|+..+.. +...|+.+|.|
T Consensus 398 G~~lV----l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~g~I 472 (709)
T COG2274 398 GAILV----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQGEI 472 (709)
T ss_pred HHHHH----hcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccCceE
Confidence 21110 13467889998888999999999999999999999999999999999999998644322 34456778999
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++.+|++|+||
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V 552 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYV 552 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEE
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcHHHhcCcCCCC-ChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000511 1300 PQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1300 pQdp~lf~gTIreNLdp~~~~-~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILl 1376 (1455)
|||++||+||||||+..+++. +|||+++|++.+|.+++|.++ ||||.++|+|.||||||||||+||||++++|+|||
T Consensus 553 ~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILl 632 (709)
T COG2274 553 LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILL 632 (709)
T ss_pred cccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999988765 679999999999999999999 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|||||||||++||+.|++.|.+..++||+|+||||++++++||||+|||+|+|+|.|+|+||++. +|.|+++++.+
T Consensus 633 LDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 633 LDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred EeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999997 67999999865
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-77 Score=759.68 Aligned_cols=541 Identities=26% Similarity=0.395 Sum_probs=440.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000511 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1455)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1455)
..++........++++....+... ........+...++++.++..++.++..+...+.+.+...+++.++++++++.|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 99 (567)
T COG1132 22 LLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444555555555554444321 011122334444555555666677777777777789999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1062 (1455)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l 1062 (1455)
+++|++++.|++++|+++|++.++..+......+...++.+++.++++...+|.+.++++....++......+.+..+..
T Consensus 100 ~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 179 (567)
T COG1132 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKL 179 (567)
T ss_pred HHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877755555567777777777777777766655554444444444455455666
Q ss_pred HHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142 (1455)
Q Consensus 1063 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1142 (1455)
.+....+.+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+......
T Consensus 180 ~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (567)
T COG1132 180 SRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGF 259 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778899999999999999999999999988888887777766654444444433333333333222221111111
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEE
Q 000511 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1222 (1455)
Q Consensus 1143 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~ 1222 (1455)
.. ..+..+.|.+...+.+...+..++..+...+..++....+.+|+.++.+.+++....... .++..|.|+|+
T Consensus 260 ~~----~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~I~f~ 332 (567)
T COG1132 260 LV----LSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEFE 332 (567)
T ss_pred HH----HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCCCCCeEEEE
Confidence 10 123367888999999999999999999999999999999999999999986653221111 34556889999
Q ss_pred EEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCC
Q 000511 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302 (1455)
Q Consensus 1223 nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQd 1302 (1455)
||+|+|++ .+++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.|||+||++++.+++|++|++||||
T Consensus 333 ~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd 411 (567)
T COG1132 333 NVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQD 411 (567)
T ss_pred EEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccc
Confidence 99999975 35799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000511 1303 PFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379 (1455)
Q Consensus 1303 p~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDE 1379 (1455)
|+||+|||||||+++++ .+|||+++|++.++++|+++++ |+||.+||+|.+||||||||+|||||++|+|+||||||
T Consensus 412 ~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDE 491 (567)
T COG1132 412 PLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDE 491 (567)
T ss_pred ceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999987 6999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1380 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1380 aTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
|||+||++||+.|++.+++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+||+++ +|.|++||+.++
T Consensus 492 aTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 492 ATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565 (567)
T ss_pred cccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHHhh
Confidence 99999999999999999988889999999999999999999999999999999999999997 679999999865
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-76 Score=753.85 Aligned_cols=563 Identities=19% Similarity=0.246 Sum_probs=437.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 963 (1455)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1455)
++.|.+...+..+. .+++.++...+....++.+.+..+.... .........++.+++++.++..++.+++.+.....+
T Consensus 13 l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (588)
T PRK11174 13 LKQQSKPAKRWLNL-SILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAG 91 (588)
T ss_pred HHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455543333222 2234444555555556666655543110 011111223444555566667777888888888899
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000511 964 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043 (1455)
Q Consensus 964 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p 1043 (1455)
.+...+++.++++++++.|.++|++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++.
T Consensus 92 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 171 (588)
T PRK11174 92 QHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888878887777777777777777778776554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123 (1455)
Q Consensus 1044 ~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1123 (1455)
..++...+...+.+..++..+...+..+.+.+.+.|.++|+++||+|++|+.+.+++.+..++..+..........+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444445455555555566777889999999999999999999999999999888887776655554444444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCCCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000511 1124 RLQLLAAFIISFIA-TMAVIGSRGNLPATF----STPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1455)
Q Consensus 1124 ~l~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~ 1198 (1455)
...++..+.+.++. ...... .+....+. .+.....+++.++..+..++..+...+.++.....+.+|+.++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 252 VLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44433332221111 111111 11111111 1222333444566677888999999999999999999999999987
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEE
Q 000511 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1455)
Q Consensus 1199 ~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1455)
++++...... +.+.+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+|.
T Consensus 331 ~~~~~~~~~~-~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 331 PLAHPQQGEK-ELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCcccCCCcc-ccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 6643211111 1111234679999999887654 57999999999999999999999999999999999999 9999999
Q ss_pred ECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCC
Q 000511 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1355 (1455)
Q Consensus 1279 IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS 1355 (1455)
+||+|+++++.+++|++|+||||||++|+|||||||.+++ ..+|+|+++|++.|+++++++++ |+||.+||+|.+||
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999885 47999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCCh
Q 000511 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1356 gGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p 1435 (1455)
|||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHHhccCCcHHHHHHHhh
Q 000511 1436 QTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1436 ~eLl~~~~s~f~~l~~~~ 1453 (1455)
+||++++ +.|++|++.+
T Consensus 568 ~eL~~~~-~~y~~l~~~q 584 (588)
T PRK11174 568 AELSQAG-GLFATLLAHR 584 (588)
T ss_pred HHHHhcc-hHHHHHHHHh
Confidence 9999865 6999999865
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-76 Score=761.41 Aligned_cols=539 Identities=26% Similarity=0.373 Sum_probs=438.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000511 900 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 979 (1455)
Q Consensus 900 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 979 (1455)
.+++.++........+++.+..+|..............+.+++++.++..++.+++.+.+.+.+.+...+++++++++++
T Consensus 166 ~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll 245 (711)
T TIGR00958 166 AFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLL 245 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666677776666543211111112223444555566677777888888899999999999999999999
Q ss_pred cCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 980 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1059 (1455)
Q Consensus 980 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~s 1059 (1455)
+.|++||+++++|+++||+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++....+...+.+.+.+..
T Consensus 246 ~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~ 325 (711)
T TIGR00958 246 RQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRY 325 (711)
T ss_pred cCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888888888888888776655444444444455555555
Q ss_pred HHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 000511 1060 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS---LWLSLRLQLLAAFIISFI 1136 (1455)
Q Consensus 1060 r~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~wl~~~l~~~~~~~~~~~ 1136 (1455)
++..+...+..+...+++.|+++|+++||+|++|+++.+++.+..++..+......... .|....+..+..+++..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 405 (711)
T TIGR00958 326 QLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYY 405 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544455566677899999999999999999999999999999888777655443322 232222222222222222
Q ss_pred HHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCC
Q 000511 1137 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216 (1455)
Q Consensus 1137 ~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~ 1216 (1455)
+...+. .+.++.|.+..++.|...+..++..+...+.++.++..+.+|+.++++.+++...... ...++.+
T Consensus 406 g~~lv~-------~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~ 476 (711)
T TIGR00958 406 GGQLVL-------TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAPLNLE 476 (711)
T ss_pred HHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCCCCCC
Confidence 111121 3456788888899999999999999999999999999999999999987665422111 1223557
Q ss_pred ccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcc
Q 000511 1217 GLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1295 (1455)
|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 889999999999753 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1296 FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1296 i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||||||++|+|||||||.++. ..+|+++++++++++++++++++ |+||.+||+|.+||||||||++||||++++|
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999874 46889999999999999999999 9999999999999999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+|+||++++ +.|++|+
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~~lv 711 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711 (711)
T ss_pred CEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchHhcC
Confidence 9999999999999999999999 3445799999999999999999999999999999999999999875 6898874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=757.06 Aligned_cols=541 Identities=21% Similarity=0.245 Sum_probs=439.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000511 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1455)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1455)
+..++........++.+....|..-..........++.+++++.++..++.+++.+.....+.+...+++..+++++++.
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444455555556666555553211111111223344555666677788888899999999999999999999999999
Q ss_pred cccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1455)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~ 1061 (1455)
|++||++.++|++++|++ |++.+.+.+...+...+..+...++.++++++.+|+++++++.+.+++..+.....+..+.
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 7888888877766666666666666666677777776655444433333333333333333
Q ss_pred HHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1455)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1455)
..+...+..+...+++.|+++|+.+||+|+.|+++.+++.+..++..+..+.....+.|.......+..+...++.++..
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445567789999999999999999999999999999999998888887777777666555544332222211111
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000511 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1455)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1455)
... ..+.++.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|...... ...+..|.|+|
T Consensus 382 ~lv----~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~---~~~~~~~~I~~ 454 (686)
T TIGR03797 382 SLL----GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKT---DPGKLSGAIEV 454 (686)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC---CCCCCCceEEE
Confidence 100 13456788888888888999999999999999999999999999999987766422111 11234578999
Q ss_pred EEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000511 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1455)
Q Consensus 1222 ~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQ 1301 (1455)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+++++|||
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 99999998666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000511 1302 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379 (1455)
Q Consensus 1302 dp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDE 1379 (1455)
||++|+|||||||.++++.+|++++++++.++++++++++ |+||.+||+|.+||||||||++||||++++|+||||||
T Consensus 535 ~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred CCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999988778999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1380 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1380 aTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|||+||++||+.+++.|++. ++|+|+||||+++++.||||+|||+|+|+|.|+|+||+++ +|.|++|++.+
T Consensus 615 pTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 615 ATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred CccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhc
Confidence 99999999999999999886 6899999999999999999999999999999999999986 57999998753
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-75 Score=756.68 Aligned_cols=540 Identities=22% Similarity=0.308 Sum_probs=442.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000511 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1455)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1455)
..++..+.....+++++...|.............++.+++++.++..++.+++.++....+.+...+++.++++++++.|
T Consensus 162 ~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~ 241 (710)
T TIGR03796 162 AGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLP 241 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444455555566666655532111111112234445555666777888889999999999999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1062 (1455)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l 1062 (1455)
++||++.++|++++|++.| +.+.+.+...+..++..++.+++.++++++.+|+++++++..++++..+...+.+..+..
T Consensus 242 ~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 320 (710)
T TIGR03796 242 VRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA 320 (710)
T ss_pred HHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 568777777777777777777777778888888777665555555555555555544555
Q ss_pred HHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142 (1455)
Q Consensus 1063 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1142 (1455)
.+......+...+++.|+++|+.+||++|+|+.+.+++.+..+...+..+.......|.......+..+...++.++...
T Consensus 321 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~ 400 (710)
T TIGR03796 321 NRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGL 400 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666778899999999999999999999999999988888887777666666666555555444322221111111
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccC----C-CCCCCCCCCc
Q 000511 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY----Q-SLSPDWPFQG 1217 (1455)
Q Consensus 1143 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~----~-~~~~~wp~~g 1217 (1455)
. ...+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|..... . ...+.++.+|
T Consensus 401 ~----v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~ 476 (710)
T TIGR03796 401 R----VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSG 476 (710)
T ss_pred H----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCC
Confidence 0 01345678888888999999999999999999999999999999999998877653221 0 0111134568
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 99999999999876678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
||||||++|+|||||||.+++ ..+|++++++++.++++++++++ |+||.++|+|.+|||||||||+||||++++|+|
T Consensus 557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999998875 47899999999999999999999 999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
||||||||+||++||+.|.+.|++ .++|+|+||||++++..||||+|||+|+|+|.|+|+||+++ ++.|++|+
T Consensus 637 liLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 637 LILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 999999999999999999999987 58999999999999999999999999999999999999986 46899987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-74 Score=752.11 Aligned_cols=557 Identities=25% Similarity=0.338 Sum_probs=441.5
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 961 (1455)
Q Consensus 882 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 961 (1455)
+..+..|++...+.. ...++..++..+.....+++++.+.|.............+..+++++.++..++.+++.++..+
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 144 LLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444554333222 2233444555566666777887777643211111112223334455556677788888888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000511 962 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1041 (1455)
Q Consensus 962 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 1041 (1455)
.+.+...+++.++++++++.|+.||++.++|++++|++ |.+.+.+.+...+...+..++.+++.++++.+.+|++++++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 301 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999998 88887776665555555555555666666666777665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1121 (1455)
Q Consensus 1042 ~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1121 (1455)
+..++++..+...+.+..++..+......+...+++.|+++|+.|||+||.|+.+.+++.+..+...+..+.......+.
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555556666778899999999999999999999999999988887777766554444433
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000511 1122 SLRLQLLAA---FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1455)
Q Consensus 1122 ~~~l~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~ 1198 (1455)
.....++.. +++..++...+. .+..+.|.+..+..+...+..++..+...+.+++....+++|+.++++.
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~-------~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVM-------RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333222222 222222222221 3456788888889999999999999999999999999999999999988
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEE
Q 000511 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1455)
Q Consensus 1199 ~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1455)
++|...... ..+.++..|.|+|+||+|+|++ .+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|+
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 776532211 1223455789999999999974 35799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcC--CCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCC
Q 000511 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1354 (1455)
Q Consensus 1279 IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~--~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~L 1354 (1455)
+||+|+++++++++|++++||||||++|+|||||||.++ ...+|++++++++.++++++++++ ||||.++|+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 999999999999999999999999999999999999987 346899999999999999999998 9999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCC
Q 000511 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1355 SgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 1434 (1455)
|||||||++||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||++++..||+|+||++|+++|.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999874 7899999999999999999999999999999999
Q ss_pred hhHHhccCCcHHHHHHH
Q 000511 1435 PQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1435 p~eLl~~~~s~f~~l~~ 1451 (1455)
|+||+++ +|.|++|++
T Consensus 692 ~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 692 HDELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHHhc-CCcHHHHhh
Confidence 9999986 479999986
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-74 Score=733.11 Aligned_cols=542 Identities=24% Similarity=0.349 Sum_probs=433.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 901 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYST--SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 978 (1455)
Q Consensus 901 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 978 (1455)
+++.++........++++....+........... ..++.+++++.++..++.+.+.+.....+.+...+++.++++++
T Consensus 29 ~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (592)
T PRK10790 29 VLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAA 108 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677777766642111111110 11222344444556666777788888889999999999999999
Q ss_pred hcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 979 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058 (1455)
Q Consensus 979 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~ 1058 (1455)
++.|.++|++.+.|++++|+++|++.+++.+...+..++..+..+++.++++.+.+|++.++++..+.+...+...+.+.
T Consensus 109 ~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~ 188 (592)
T PRK10790 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188 (592)
T ss_pred HcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888877777777777777765543332222222222223333
Q ss_pred HHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000511 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL-SLRLQLLAAFIISFIA 1137 (1455)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~~ 1137 (1455)
.+...+......+....++.|+++|+.+||+|+.|+.+.+++.+..+...+..+.....+.+. .....++..++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (592)
T PRK10790 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLL 268 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334456677899999999999999999999999999988777666655444333222 2222222222111111
Q ss_pred HHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCc
Q 000511 1138 TMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQG 1217 (1455)
Q Consensus 1138 ~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g 1217 (1455)
+ +.+. ...+..+.|.+..++.+...+..++..+...+.++++...+.+|+.++++.++++.... ..++..+
T Consensus 269 ~--~~~~---~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~ 339 (592)
T PRK10790 269 M--LFGF---SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND----DRPLQSG 339 (592)
T ss_pred H--HHHH---HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC----ccCCCCC
Confidence 1 1111 11345678888888999999999999999999999999999999999998765432111 1233457
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++.+|++|+
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 89999999999753 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1298 ~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
||||||.+|+|||||||.+++..+|++++++++++|++++++++ |+||.++|+|.+||||||||++||||++++|+||
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999888999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|+||++++ +.|++|++.+
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~~l~~~~ 575 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYWQMYQLQ 575 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHHHHHHHH
Confidence 9999999999999999999999988899999999999999999999999999999999999999875 6999999754
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-73 Score=729.99 Aligned_cols=543 Identities=25% Similarity=0.353 Sum_probs=443.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000511 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1455)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1455)
+.++...+.....++++.+.+.............+...++++.++..++.+++.+...+.+.+....++..+++++++.|
T Consensus 33 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~ 112 (582)
T PRK11176 33 ALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMP 112 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444445555666555432211111111122223344556666777777777888889999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1062 (1455)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l 1062 (1455)
..+|++.+.|++++|+++|++.+.+.+...+..++..++.+++.++++.+.+|+++++++..+++...+.....+..++.
T Consensus 113 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~ 192 (582)
T PRK11176 113 VSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNI 192 (582)
T ss_pred HHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888888888888888888887766655544444444444444444444
Q ss_pred HHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142 (1455)
Q Consensus 1063 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1142 (1455)
.+......+.+.+++.|.++|+.+||+|+.++.+.+++.+..+...+..........|.....+++..+...++..+...
T Consensus 193 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 272 (582)
T PRK11176 193 SKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASF 272 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666778899999999999999999999999999999999888887777666666665555544322222111111
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEE
Q 000511 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1222 (1455)
Q Consensus 1143 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~ 1222 (1455)
. ...+..+.|.+..++.+...+..++..+...+.+++....+.+|+.++.+.+++...+.. ...|..+.|+|+
T Consensus 273 ~----~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~i~~~ 345 (582)
T PRK11176 273 P----SVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR---VIERAKGDIEFR 345 (582)
T ss_pred H----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---CCCCCCCeEEEE
Confidence 0 012456788888889999999999999999999999999999999999987665322111 112445689999
Q ss_pred EEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCC
Q 000511 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302 (1455)
Q Consensus 1223 nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQd 1302 (1455)
||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|||||
T Consensus 346 ~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 346 NVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQN 425 (582)
T ss_pred EEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccC
Confidence 99999987667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHhcCcCC--CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1303 PFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1303 p~lf~gTIreNLdp~~--~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
|++|+|||||||..+. ..+|++++++++.++++++++++ ||||.+||+|.+|||||||||+||||++++|+|||||
T Consensus 426 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD 505 (582)
T PRK11176 426 VHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_pred ceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999999998763 36899999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
||||+||++|++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|++++ +.|++|++.+
T Consensus 506 EptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~~~ 579 (582)
T PRK11176 506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKMQ 579 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHHHH
Confidence 9999999999999999999988899999999999999999999999999999999999999875 6999999753
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-73 Score=737.86 Aligned_cols=530 Identities=23% Similarity=0.324 Sum_probs=430.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000511 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1455)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1455)
+..++...+....++.++...|.............+..+++++.++..++.+++.++..+.+.+...+++..+++++++.
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444455555666666666553211111111222333444455667778888889999999999999999999999999
Q ss_pred cccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1455)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~ 1061 (1455)
|++| ++.++|++++|+ +|++.+.+.+...+...+..++.++..++++.+.+|+++++.+..++++..+..++.+..++
T Consensus 234 ~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 311 (694)
T TIGR03375 234 RMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311 (694)
T ss_pred Cccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 788999999999 79999998887776666666666666666677777776655444434443344444444444
Q ss_pred HHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 000511 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII---SFIAT 1138 (1455)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~---~~~~~ 1138 (1455)
..+...+..+...+++.|+++|+.+||+|++|+.+.+++.+..++..+..+.....+.+.....+++..+.. .+++.
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567778899999999999999999999999999998888877777665555554444444333221 11111
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCcc
Q 000511 1139 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1218 (1455)
Q Consensus 1139 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1218 (1455)
..+. .+..+.|.+..++.+...+..++..+...+.++.....+.+|+.++++.++|...... .....+..|.
T Consensus 392 ~~v~-------~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~~ 463 (694)
T TIGR03375 392 YLIS-------DGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR-FLHRPRLQGE 463 (694)
T ss_pred HHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CCCCCCccce
Confidence 1121 3456788888899999999999999999999999999999999999988776432111 1111234678
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++++++|++++|
T Consensus 464 I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~ 543 (694)
T TIGR03375 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGY 543 (694)
T ss_pred EEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEE
Confidence 99999999997666789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
|||||++|+|||||||.++++ .+|++++++++.++++++++++ |+||.+||+|.+||||||||++||||++++|+|+
T Consensus 544 v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~il 623 (694)
T TIGR03375 544 VPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPIL 623 (694)
T ss_pred ECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999998865 7899999999999999999999 9999999999999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+++|.|+|+||+++
T Consensus 624 iLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 624 LLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999998899999999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-73 Score=670.06 Aligned_cols=513 Identities=24% Similarity=0.343 Sum_probs=438.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHH
Q 000511 933 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1012 (1455)
Q Consensus 933 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~ 1012 (1455)
....+++.++++.++..++.+.+......++.++...+|.++++++.+.+..+-+..|+|++....+..++.++..+...
T Consensus 38 ~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ry 117 (559)
T COG4988 38 SLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARY 117 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777888888888888888999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHh
Q 000511 1013 LNILLANFVGLLGIAVVLSYVQVF---FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRA 1089 (1455)
Q Consensus 1013 l~~~~~~~~~~l~~~~~~~~~~~~---~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIra 1089 (1455)
+.....+.+..+.+++.+++.+|. ++++..|++.++..+--. ..+...+..-.+...+.+||.|.++|+.|+|+
T Consensus 118 LPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~---~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~ 194 (559)
T COG4988 118 LPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL---AAKDASEKQFSALARLSGHFLDRLRGLETLRA 194 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 888888888777777777776664 444556666655443211 11111222233445677899999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHH
Q 000511 1090 FKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169 (1455)
Q Consensus 1090 f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~ 1169 (1455)
||..+...++..+..++..+..+....++.--+..+|++.++-+..+++...+..-+. +..+....-+++..+-.+.
T Consensus 195 f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~---G~ltl~~~l~~LiLAPEff 271 (559)
T COG4988 195 FGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGE---GDLTLFAGLFVLILAPEFF 271 (559)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999998877666665554322211 2344444556666778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEE
Q 000511 1170 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQV 1249 (1455)
Q Consensus 1170 ~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~Gekv 1249 (1455)
.++..+-..|........+.+.+..+.+.|.+...........|..+.+++.+|++++|+++. ++++|+||+++|||++
T Consensus 272 ~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~t 350 (559)
T COG4988 272 QPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLT 350 (559)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEE
Confidence 999999999999999999999999999887765332222223344455677779999998654 8999999999999999
Q ss_pred EEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHH
Q 000511 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSV 1328 (1455)
Q Consensus 1250 gIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~a 1328 (1455)
||||+||||||||+++|+|+.+|++|+|.+||+|+.+++.+.+|+++++|||+|++|+|||||||.+++. .+|++|+++
T Consensus 351 alvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~a 430 (559)
T COG4988 351 ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAA 430 (559)
T ss_pred EEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998876 689999999
Q ss_pred HHHhcHHHHHHh-CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEE
Q 000511 1329 LEKCHVKEEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1407 (1455)
Q Consensus 1329 L~~~~l~~~i~~-lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~ 1407 (1455)
+++++++++++. .||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||+
T Consensus 431 l~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~ 510 (559)
T COG4988 431 LDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLV 510 (559)
T ss_pred HHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEE
Confidence 999999999987 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1408 IAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1408 IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
||||++.++++|+|+|||+|+++|.|+|++|.+++ +.|+.|+.++
T Consensus 511 itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~-~~y~~l~~~q 555 (559)
T COG4988 511 ITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQ 555 (559)
T ss_pred EEcChHHHhcCCEEEEecCCceeccCCHHHHhhcC-cHHHHHHHHH
Confidence 99999999999999999999999999999999875 6999999864
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-75 Score=734.31 Aligned_cols=516 Identities=23% Similarity=0.307 Sum_probs=421.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHH
Q 000511 933 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1012 (1455)
Q Consensus 933 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~ 1012 (1455)
....+...|+.+++...+..++...++.+.+.|...++|.+.+++++|++++|||.+..|++..|++.|++.+++.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 44567777888888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCc
Q 000511 1013 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKS 1092 (1455)
Q Consensus 1013 l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~ 1092 (1455)
+..++..+..+++.+++.++..|.+.++++++..+.......+.+..-.....+..+.+.--+...|++.+++|+.||+.
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~g 228 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNG 228 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 99999999999888888888888776655444433322222222222222223333444455678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 000511 1093 EDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1172 (1455)
Q Consensus 1093 e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l 1172 (1455)
|+...++|.+.++...|..... ..|.++.....-.++.+..+....++.. .......++|.+..++..++.-...+
T Consensus 229 q~~e~~ry~~~L~~~~k~gi~~---g~~~G~~~G~~~~~~~~~~a~~~WyG~~-li~~~~~~~g~v~~v~~~vl~g~~sL 304 (1228)
T KOG0055|consen 229 EKKEIERYSKALENALKFGIKK---GLFKGLGLGFTFFLLFASYALAFWYGST-LILNGGYNGGDVITVFFSVLIGGMSL 304 (1228)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCceEEEEEeehhhhhhhh
Confidence 9999999999998888776543 2333332222222221212222222211 01112345555555555555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCC-CcceeeeeEEEeCCcEEEE
Q 000511 1173 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGI 1251 (1455)
Q Consensus 1173 ~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~isl~I~~GekvgI 1251 (1455)
+........+.++.+|..++.+.++..++...........-..+|.|+|+||+|+|+... .++|+|+||+|++||.||+
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~val 384 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVAL 384 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEE
Confidence 777778888889999999999998765543211111112223579999999999997542 3799999999999999999
Q ss_pred ECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHH
Q 000511 1252 VGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLE 1330 (1455)
Q Consensus 1252 vGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~ 1330 (1455)
||+|||||||++++|.|+|+|++|+|+|||.|+.+++.++||++||+|.|||+||++||+|||.++.+ .+++|+.+|++
T Consensus 385 VG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 385 VGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999874 58999999999
Q ss_pred HhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEe
Q 000511 1331 KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1408 (1455)
Q Consensus 1331 ~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~I 1408 (1455)
.++.++++..+ |+||.+||+|..||||||||+||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.|+|
T Consensus 465 ~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivV 544 (1228)
T KOG0055|consen 465 AANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVV 544 (1228)
T ss_pred HccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1409 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1409 aHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
||||+||+++|+|+||++|+|+|.|+|+||++++ |.|++|++.+
T Consensus 545 aHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q 588 (1228)
T KOG0055|consen 545 AHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQ 588 (1228)
T ss_pred eeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHH
Confidence 9999999999999999999999999999999987 8999999865
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-72 Score=713.23 Aligned_cols=504 Identities=22% Similarity=0.300 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHH
Q 000511 941 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1020 (1455)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1020 (1455)
++++.++..++.++..+.....+.+...+++.++++++++.|+.+|++.++|++++|+++|++.+++.+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777888889999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHH
Q 000511 1021 VGLLGIAVVLSYVQVFFLLLLVPFWF-IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099 (1455)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~l~~~p~~~-~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~ 1099 (1455)
+.+++.++++++.+|.++++++..+. ++..+..++.+..+...+...++.+.+.+.+.|.++|+++||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88888888888888877665432222 22223334444444444555666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000511 1100 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA-APIVSLLGNFLSS 1178 (1455)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~-~~~~~~l~~l~~~ 1178 (1455)
+.+..++..+..+.......+.....+++..+...++..+..... .+..+.|.+..++.|. ......+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-----~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~ 300 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-----GGNAQPGALIALFVFAALAAFEALMPVAGA 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777666666555555544433222211111111 1234556555555554 3334566777778
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCCh
Q 000511 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1258 (1455)
Q Consensus 1179 ~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSG 1258 (1455)
+.+......+.+|+.++++.+++........ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 301 ~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 301 FQHLGQVIASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCcccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCC
Confidence 8888999999999999998776532111111 11345789999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHH
Q 000511 1259 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEE 1337 (1455)
Q Consensus 1259 KSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~ 1337 (1455)
||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||||++|+|||||||..+. ..+|+++++++++++++++
T Consensus 379 KSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~ 458 (574)
T PRK11160 379 KSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKL 458 (574)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998875 4689999999999999999
Q ss_pred HHh-CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHh
Q 000511 1338 VEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1416 (1455)
Q Consensus 1338 i~~-lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~ 1416 (1455)
+++ .||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.
T Consensus 459 i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~ 538 (574)
T PRK11160 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE 538 (574)
T ss_pred HcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH
Confidence 985 4999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHh
Q 000511 1417 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1417 ~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~ 1452 (1455)
.||+|++|++|+++|.|+|+||+++ +|.|++|++.
T Consensus 539 ~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 539 QFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred hCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHhh
Confidence 9999999999999999999999986 4699999874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=654.55 Aligned_cols=499 Identities=22% Similarity=0.345 Sum_probs=420.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Q 000511 944 FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGL 1023 (1455)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~ 1023 (1455)
+++...+..++..+.......++-.++|.++++++...+..-..+...|+++||+..|++.+|+.+-..+...+..++..
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 34455555555555666678888899999999999999999999999999999999999999999999999888888888
Q ss_pred HHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHH
Q 000511 1024 LGIAVVLSYVQVFFLLLLVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1102 (1455)
Q Consensus 1024 l~~~~~~~~~~~~~~l~~~p~-~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1102 (1455)
++..+.+++.+|++++.+... ++....+.-.+.+..|...+.-...+..++++|.|.+.|....+.||.++.|.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 888888888888776644333 3333444445555666666666778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000511 1103 HVVLYQRTSYSELTASLWLSLRLQLLAAFIIS-FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL-SSFT 1180 (1455)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~-~~~~ 1180 (1455)
..+.+.+.......+..|....+.++.++++. .+.+++..... +..+.-.+.+++..++.....+.-+. ..+.
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~-----G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGA-----GALAQPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----CCcchhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 99999999999999999999988888876655 33333332111 11121112222222233344444444 6678
Q ss_pred HHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHH
Q 000511 1181 ETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1260 (1455)
Q Consensus 1181 ~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKS 1260 (1455)
++.+...|++|+.+..+.++|...+....+ -+.+ .++++||+|+|+++.+++|+|+||++++||||||+||||||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~--~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKS 378 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDEQTA--TTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKS 378 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCccccC--Cccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHH
Confidence 888999999999999988777533211111 1122 8999999999998888999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHH
Q 000511 1261 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVE 1339 (1455)
Q Consensus 1261 TLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~ 1339 (1455)
|++++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+++|+||+|+||...++ .+|||+|++|+++||.+.++
T Consensus 379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~ 458 (573)
T COG4987 379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE 458 (573)
T ss_pred HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654 69999999999999999999
Q ss_pred hC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh
Q 000511 1340 AV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417 (1455)
Q Consensus 1340 ~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~ 1417 (1455)
+. ||+|.+||+|.+||||||||++|||+||++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..++.
T Consensus 459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~ 538 (573)
T COG4987 459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538 (573)
T ss_pred hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHH
Q 000511 1418 MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1418 ~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~ 1451 (1455)
||||+|||+|+++|+|+|.+|+++ +|.|++|++
T Consensus 539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 999999999999999999999995 579999986
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-72 Score=716.74 Aligned_cols=544 Identities=25% Similarity=0.375 Sum_probs=459.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000511 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1455)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1455)
++.++..++..+.+++++...+.............+..+++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 100 (571)
T TIGR02203 21 VAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGL 100 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555556666655543211111112233344566677777888888888999999999999999999999999
Q ss_pred cccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1455)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~ 1061 (1455)
|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|+++++++.+.++...+...+.+..++
T Consensus 101 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~ 180 (571)
T TIGR02203 101 PVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180 (571)
T ss_pred CHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999989888988888888888888899988877776666666666666666666
Q ss_pred HHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1455)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1455)
..+...+..++..+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (571)
T TIGR02203 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIAL 260 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777888999999999999999999999999999999999998888877777777666555554432222111111
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEE
Q 000511 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1455)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1455)
.. ...+..++|.+..++.++..+..++..+...+.++.....+.+|+.++++.++++..... +. -+..+.|++
T Consensus 261 ~~----~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~--~~~~~~i~~ 333 (571)
T TIGR02203 261 FQ----AQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-AI--ERARGDVEF 333 (571)
T ss_pred HH----HHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CC--CCCCCeEEE
Confidence 10 013456789999999999999999999999999999999999999999987665422111 11 124578999
Q ss_pred EEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000511 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1455)
Q Consensus 1222 ~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQ 1301 (1455)
+||+|+|+++.+++|+|+||+|+|||+++|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999997655689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCcCC--CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000511 1302 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1455)
Q Consensus 1302 dp~lf~gTIreNLdp~~--~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlL 1377 (1455)
||++|+|||||||..++ +.+|+++++++++++++++++++ ||||.++|+|.+||||||||+|||||++++|+|++|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999875 57899999999999999999998 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1378 DEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++++ +.|+++++.+
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~~~~ 568 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQLHNMQ 568 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHHHHHHh
Confidence 99999999999999999999988999999999999999999999999999999999999999865 6999988753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-72 Score=724.22 Aligned_cols=541 Identities=23% Similarity=0.330 Sum_probs=438.1
Q ss_pred HHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 000511 905 ILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984 (1455)
Q Consensus 905 ~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ 984 (1455)
++........++.++...|..-..........+..+++++.++..++.+++.++....+.+...+++.++++++++.|+.
T Consensus 149 ~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~ 228 (694)
T TIGR01846 149 LALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLG 228 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33444444556666655553211111112223344555666667788888999999999999999999999999999999
Q ss_pred ccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRR 1064 (1455)
Q Consensus 985 ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~ 1064 (1455)
||++.++|++++|+ +|++.+.+.+...+..++..++.++..++++++.+|.++++++..++++..+.....+..+...+
T Consensus 229 ~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~ 307 (694)
T TIGR01846 229 YFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVE 307 (694)
T ss_pred HcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 69999998877766666655655555566777777776655444433333333333322233333
Q ss_pred HHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000511 1065 LDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS 1144 (1455)
Q Consensus 1065 l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~ 1144 (1455)
...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.....+.+.....+++..+...++.++.....
T Consensus 308 ~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv 387 (694)
T TIGR01846 308 DKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLV 387 (694)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33345567789999999999999999999999999999999888888777766666666555554432222111111100
Q ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEE
Q 000511 1145 RGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1224 (1455)
Q Consensus 1145 ~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nv 1224 (1455)
..+.++.|.+..+..+...+..++..+...+.++++...+.+|+.++++.++|+..... . ...+..|.|+|+||
T Consensus 388 ----~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~-~-~~~~~~~~i~~~~v 461 (694)
T TIGR01846 388 ----IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGL-A-ALPELRGAITFENI 461 (694)
T ss_pred ----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCC-C-CCCCCCCeEEEEEE
Confidence 13456788888888999999999999999999999999999999999988776432111 1 11123578999999
Q ss_pred EEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCC
Q 000511 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1304 (1455)
Q Consensus 1225 s~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~ 1304 (1455)
+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++|||||.
T Consensus 462 sf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 462 RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541 (694)
T ss_pred EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe
Confidence 99998766789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000511 1305 LFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381 (1455)
Q Consensus 1305 lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaT 1381 (1455)
+|+|||||||..++ ..+|++++++++.++++++++++ |+||.++++|.+||||||||++||||++++|+||||||||
T Consensus 542 lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpt 621 (694)
T TIGR01846 542 LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621 (694)
T ss_pred ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 99999999998865 46899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1382 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1382 S~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|+||++++ |.|++|++.+
T Consensus 622 s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~~ 692 (694)
T TIGR01846 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQ 692 (694)
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHHHHHhh
Confidence 9999999999999999988899999999999999999999999999999999999999865 7999999753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-74 Score=645.73 Aligned_cols=493 Identities=24% Similarity=0.407 Sum_probs=400.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhh
Q 000511 949 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1028 (1455)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1028 (1455)
+++.-+|++++.....-..+.+-.++++++....+.|.-...+|+.+.-+.+..+.+. .+.....++.-.+.-+...++
T Consensus 273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhh
Confidence 4566678888888888889999999999999999999999999998877766555443 222222222222222222222
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHH
Q 000511 1029 -VLSYVQVFFLLLLVPFWFIYSKL----QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1103 (1455)
Q Consensus 1029 -~~~~~~~~~~l~~~p~~~~~~~i----~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ 1103 (1455)
......+|+.+++......|..+ ..+-.+..|.+...+.++++ .-.+++-+.+|+|-|++|++..++|.+.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrA----r~vDsllNFETVKyy~Ae~yEverYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRA----RQVDSLLNFETVKYYNAEDYEVERYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhh----hhhhhhhcchhhhccCchhhhHHHHHHH
Confidence 22334677777766666555433 22233444445444555543 4578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1104 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETE 1183 (1455)
Q Consensus 1104 ~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e 1183 (1455)
++.+|+..++....-..++..-..+..+......++.+ ........+.|...+..+|.+++..+++++-..+..++
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~a----Y~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ 503 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCA----YRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQ 503 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheee----eeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999988776554444443333322221111111111 11123455778888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHH
Q 000511 1184 KEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1263 (1455)
Q Consensus 1184 ~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl 1263 (1455)
++..-.|++.++++.++|-.+.+..+|- --.+|.|+|+||+|.|+|+ +|||+||||+++||+.||+|||||+||||++
T Consensus 504 ~nfiDmEnmfdllkee~eVvd~P~a~pl-~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTim 581 (790)
T KOG0056|consen 504 KNFIDMENMFDLLKEEPEVVDLPGAPPL-KVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIM 581 (790)
T ss_pred HhhhhHHHHHHHhhcCchhhcCCCCCCc-cccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHH
Confidence 9999999999999887775433332322 2357999999999999876 5799999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC-
Q 000511 1264 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV- 1341 (1455)
Q Consensus 1264 ~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l- 1341 (1455)
++|+|++|.++|+|+|||+||+++..+.||++||+||||.+||++||..||.+... .+|||+.+|.+.++++|.|-++
T Consensus 582 RlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fP 661 (790)
T KOG0056|consen 582 RLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFP 661 (790)
T ss_pred HHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999998764 5899999999999999999999
Q ss_pred -CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCE
Q 000511 1342 -GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDE 1420 (1455)
Q Consensus 1342 -gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~Dr 1420 (1455)
|++|.|||+|-.||||||||+++||++||+|.|++||||||+||..||+.||.++.+..+++|.|+|||||+||.++|.
T Consensus 662 egY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ 741 (790)
T KOG0056|consen 662 EGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADL 741 (790)
T ss_pred hhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEeCChhHHhccCCcHHHHHHHh
Q 000511 1421 ILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1421 I~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~ 1452 (1455)
|+|+++|+|+|.|+|+||+++++|.|++||+.
T Consensus 742 ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 99999999999999999999999999999953
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-71 Score=692.50 Aligned_cols=543 Identities=23% Similarity=0.279 Sum_probs=470.5
Q ss_pred chHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1455)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1455)
+-++..++-|++.++-..+..++..+++++.|++.+.++|.+-.+.+......+++++.+..++.+++.....+...+++
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667778888889999999999999999999999999987667777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000511 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 421 (1455)
Q Consensus 344 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~ 421 (1455)
.|+...+...+|+|.+++|...++++++|++++.++ |.+.|.+++.. +..+...++-++....|.++ -+.-+++++
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~y-s~~L~li~l 300 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVL 300 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999886 88888886543 33344555555444444444 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1455)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1455)
+.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+.++...+.........
T Consensus 301 ~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 380 (709)
T COG2274 301 AAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILN 380 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56666667788888999999999999999999999999999999999999999999999998888888888877776666
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 000511 502 FFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 579 (1455)
Q Consensus 502 ~~~~~~~~~--~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 579 (1455)
.+......+ +.+++||++.+.++.+|.|+++++.++.+.+..|+..+...+..+.++.++.+|+.+.++.|...+...
T Consensus 381 ~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~ 460 (709)
T COG2274 381 TIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK 460 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 555444433 356889999999999999999999999999999999999999999999999999999998765433111
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000511 580 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~ 659 (1455)
... ......+.|+++|++|+|..+++ ++|+|+||+|++||.++|||+||||||||+|+|+|.++|
T Consensus 461 ~~~-----------~~~~~~g~I~~~nvsf~y~~~~~----~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 461 TLI-----------HLPKLQGEIEFENVSFRYGPDDP----PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred ccc-----------cccccCceEEEEEEEEEeCCCCc----chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 000 11245678999999999986532 359999999999999999999999999999999999999
Q ss_pred CCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCC-HHHHHHHHHHhcchHHHhhccCCCcccccC
Q 000511 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISLMVGGDMAYIGE 725 (1455)
Q Consensus 660 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~-~~~~~~v~~~~~l~~di~~l~~gd~t~ig~ 725 (1455)
++|+|.++| +|+||+|++.+|+|||+|||.++.+.. .|+..++++..+.++++..+|.|++|.+||
T Consensus 526 ~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 999999997 599999999999999999999998754 478888888889999999999999999999
Q ss_pred CCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCC
Q 000511 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 805 (1455)
Q Consensus 726 ~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 805 (1455)
+|.+||||||||++||||++++|+|+||||||||||+++++.|.+++ .. ...++|+|+||||++.+++||+|+||++|
T Consensus 606 ~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL-LQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HH-HhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999984 33 56789999999999999999999999999
Q ss_pred eEEEecCHHHHHhccccCcc
Q 000511 806 QVKWIGSSADLAVSLYSGFW 825 (1455)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~ 825 (1455)
+|+++|+++|+++..+.+.+
T Consensus 684 kiv~~gs~~ell~~~g~y~~ 703 (709)
T COG2274 684 KIVEQGSHEELLAQGGLYAR 703 (709)
T ss_pred ceeccCCHHHHHHhcChHHH
Confidence 99999999999987665544
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=699.14 Aligned_cols=545 Identities=23% Similarity=0.309 Sum_probs=432.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000511 900 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 979 (1455)
Q Consensus 900 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 979 (1455)
+++..++..++....++++....|.... ......++.+++++.++..+..+....+..+...+...++..+++++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666777666653221 1112222333333334433334444444444555555666779999999
Q ss_pred cCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 980 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1059 (1455)
Q Consensus 980 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~s 1059 (1455)
+.|..+|++.+.|++++|+++|++.+.+.+...+..++..++..++.++++.+.+|+++++++.+++++..+.+.+.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999877766666666666666666666777778777666655555555666666666
Q ss_pred HHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1060 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1139 (1455)
Q Consensus 1060 r~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1139 (1455)
++..+...+..+.+.+++.|.++|+.+||+|+.++.+.+++.+..+...+..........+.....+++..+...++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667777888999999999999999999999999999998888877766655555554444443332222211111
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccE
Q 000511 1140 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1219 (1455)
Q Consensus 1140 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1219 (1455)
.... ...+..+.|.+..++.++..+..++..+...+.++..+..+.+|+.++.+.+++........+. -+..+.|
T Consensus 261 g~~~----v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~I 335 (588)
T PRK13657 261 GAAL----VQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-GRVKGAV 335 (588)
T ss_pred HHHH----HHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-CCCCCeE
Confidence 1111 1134567888888899999999999999999999999999999999998765442211111111 1234689
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|++++||
T Consensus 336 ~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 336 EFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999743 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000511 1300 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1300 pQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILl 1376 (1455)
||||.+|+|||||||.+++ ..+|+++++++++++++++++++ |+||.++++|.+||||||||++||||++++|+|+|
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred ecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998875 46899999999999999999998 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
||||||+||++|++.|.+.|++..+++|+|+||||++.++.||||++|++|+++|.|+|++|+++ ++.|++|+++++
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLRAQG 571 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHHHhh
Confidence 99999999999999999999988789999999999999999999999999999999999999986 479999988653
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-71 Score=663.88 Aligned_cols=536 Identities=20% Similarity=0.225 Sum_probs=440.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 267 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 345 (1455)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1455)
+.+.+..||.+..+.++.++.......-|.++.+++|.+.. .+....-.-....+..++++.+++...+.+.....+.+
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~r 218 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGER 218 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888899999999999999999998876 33322223345566677888899999898989999999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHH
Q 000511 346 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVA-LYLLYTQVKFAFVSGLAI 423 (1455)
Q Consensus 346 ~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~pl~i~i~-~~lL~~~lg~a~l~g~~v 423 (1455)
+-..+...+|++.++...+++++..+|++++.++.|++.+.+.+ .++.+..-+.++...+ .+|++..+.++.+.-+ +
T Consensus 219 v~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i-~ 297 (716)
T KOG0058|consen 219 VVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI-V 297 (716)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH-H
Confidence 99999999999999999999999999999999999999998754 4566665566665443 3445545555543322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 424 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 503 (1455)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 503 (1455)
+.+.+.+..+++++.++..++.+++..+-.+...|.|++||+||+|+.|+...++..+.-++-++..+|......+....
T Consensus 298 ~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~ 377 (716)
T KOG0058|consen 298 VPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGS 377 (716)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhH
Confidence 23333456677788888888888888888899999999999999999998877777665444344444433333333222
Q ss_pred HHH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhh
Q 000511 504 WAT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 581 (1455)
Q Consensus 504 ~~~--~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 581 (1455)
+.. ....++++.+|.|++.++.||++...+++.+-..+..++..+...++.++++..+-+|+.+|++.++.-+.. .
T Consensus 378 ~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G- 455 (716)
T KOG0058|consen 378 TNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-G- 455 (716)
T ss_pred HHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-C-
Confidence 222 224567788999999999999999999999999999999999999999999999999999999765432211 0
Q ss_pred cCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC
Q 000511 582 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 661 (1455)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~ 661 (1455)
...| ....+.|+|+|++|+||.+++. ++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++
T Consensus 456 ~~~p----------~~~~G~IeF~~VsFaYP~Rp~~---~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts 522 (716)
T KOG0058|consen 456 TLAP----------DHLQGVIEFEDVSFAYPTRPDV---PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522 (716)
T ss_pred cccc----------ccccceEEEEEeeeecCCCCCc---hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 0011 1345789999999999987554 45999999999999999999999999999999999999999
Q ss_pred cEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000511 662 GSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1455)
Q Consensus 662 G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g 727 (1455)
|+|.+|| +||+|.|+|.||++||+|||.+|.+ .++|+..++.+.+..++.|..+|+|++|.|||+|
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKG 602 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcc
Confidence 9999998 5999999999999999999999975 5778899999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeE
Q 000511 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1455)
Q Consensus 728 ~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1455)
..|||||||||||||||++||.||||||+|||||++++.. .+.++.. ..+++|||+|+||++.+++||+|+++++|++
T Consensus 603 ~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l-Vq~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V 680 (716)
T KOG0058|consen 603 SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYL-VQEALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRV 680 (716)
T ss_pred ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH-HHHHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeE
Confidence 9999999999999999999999999999999999997654 4444544 6778999999999999999999999999999
Q ss_pred EEecCHHHHHhcc
Q 000511 808 KWIGSSADLAVSL 820 (1455)
Q Consensus 808 ~~~g~~~~l~~~~ 820 (1455)
+|.|+|+|+++..
T Consensus 681 ~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 681 VEMGTHDELLSKP 693 (716)
T ss_pred EecccHHHHhhCc
Confidence 9999999999876
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=699.61 Aligned_cols=546 Identities=24% Similarity=0.365 Sum_probs=436.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000511 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1455)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1455)
+.++........++.+....+..-..........++.+++++.++..++.+++.++....+.+....++..+++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~ 105 (576)
T TIGR02204 26 ALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLS 105 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444445555555555544421111111112223344445555566667777888888899999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1062 (1455)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l 1062 (1455)
.++|++...|++++|+++|++.+++.....+..++..++.+++.++++++.+|++.++++...++...+...+.+..+..
T Consensus 106 ~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~ 185 (576)
T TIGR02204 106 PSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKL 185 (576)
T ss_pred HHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888877777777777777777777765544433333333333444444445
Q ss_pred HHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142 (1455)
Q Consensus 1063 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1142 (1455)
.+.....+....+++.|.++|+++||+|+.|+.+.+++.+..+...+..........|.......+..+...++..+...
T Consensus 186 ~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 265 (576)
T TIGR02204 186 SRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAH 265 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666778899999999999999999999999999998888777766655555555544433332211111111110
Q ss_pred hhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEE
Q 000511 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQ 1222 (1455)
Q Consensus 1143 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~ 1222 (1455)
. ...+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|...........+|..+.|+|+
T Consensus 266 ~----v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (576)
T TIGR02204 266 D----VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFE 341 (576)
T ss_pred H----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEE
Confidence 0 013456788888888899999999999999999999999999999999887654211111111223445789999
Q ss_pred EEEEEecCCC-CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeC
Q 000511 1223 NVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1455)
Q Consensus 1223 nvs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQ 1301 (1455)
||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+||
T Consensus 342 ~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q 421 (576)
T TIGR02204 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQ 421 (576)
T ss_pred EEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEcc
Confidence 9999997543 579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1302 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1302 dp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
||++|+|||||||.++++ .+|++++++++++++.++++.+ |+||.++|+|.+||||||||++||||++++|+|||||
T Consensus 422 ~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 422 DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 999999999999998654 5789999999999999999998 9999999999999999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
||||+||.+|++.+.+.+++..+++|+|+||||++.+..||||++|++|+++|.|+|++|+++ ++.|++|++.+
T Consensus 502 Epts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 502 EATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575 (576)
T ss_pred CcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHHhhc
Confidence 999999999999999999998889999999999999999999999999999999999999985 57999998753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=691.71 Aligned_cols=463 Identities=21% Similarity=0.266 Sum_probs=383.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Q 000511 944 FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGL 1023 (1455)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~ 1023 (1455)
+.++..++.++..+.....+.+...+++.++++++++.|.+||++.++|++++|+++|++.+++.+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777778888899999999999999999999999999999999999999999999888888888888888
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHH
Q 000511 1024 LGIAVVLSYVQVFFLLLLVPFWFIY-SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1102 (1455)
Q Consensus 1024 l~~~~~~~~~~~~~~l~~~p~~~~~-~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1102 (1455)
++.++++++.+|.+.++++..+.++ .....++.+..++..+...+..+.+.+++.|+++|+++||+|++|+.+.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 8888888888887766554443332 223334444444444444566678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1103 HVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTET 1182 (1455)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~ 1182 (1455)
..++..+..........+......++..+...++.++... ....+..+.|.+...+.++..+..++..+...+.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 297 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP----AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQAL 297 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776655554444433333333222111111110 001244678888888888889999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccCC-CCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHH
Q 000511 1183 EKEMVSLERVLEYMDVPQEELCGYQ-SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS 1261 (1455)
Q Consensus 1183 e~~~~s~~Ri~~~~~~~~e~~~~~~-~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKST 1261 (1455)
.+...+.+|+.++++.++|...... .+...+|..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||||||||||
T Consensus 298 ~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 298 TRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKST 376 (529)
T ss_pred HHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999999987765322111 111124456789999999999754 46999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHh
Q 000511 1262 ILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEA 1340 (1455)
Q Consensus 1262 Ll~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~ 1340 (1455)
|+++|+|+|+|++|+|.+||+|++++ .+++|++++||||||++|+|||||||.+++ ..+|+++++|++.+++++++++
T Consensus 377 Ll~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~ 455 (529)
T TIGR02868 377 LLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRS 455 (529)
T ss_pred HHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999999999 999999999999999999999999999875 4689999999999999999999
Q ss_pred C--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccCh
Q 000511 1341 V--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRI 1412 (1455)
Q Consensus 1341 l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl 1412 (1455)
+ |+||.+||+|.+||||||||+|||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 456 lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 456 LPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 8 99999999999999999999999999999999999999999999999999999999988999999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-70 Score=632.13 Aligned_cols=505 Identities=23% Similarity=0.368 Sum_probs=396.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHH
Q 000511 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1014 (1455)
Q Consensus 935 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~ 1014 (1455)
..-+..|.+..+...++..++.+.+.+...++-+....+.+++.+...+++|.+..+|.+.+...+-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999888877777666665555554
Q ss_pred HHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHh
Q 000511 1015 ILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKL----QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRA 1089 (1455)
Q Consensus 1015 ~~~~~~~~~l~~~~~~~~-~~~~~~l~~~p~~~~~~~i----~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIra 1089 (1455)
.++..++.+......+.+ ..+.++++.+.....|..+ .++-.+-.+++.+.+ ...-....|++.+-.+||+
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Ad----n~as~~~~dsL~Nye~VKs 229 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNAD----NSASRRAYDSLINYEIVKS 229 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhh----hHHHHHHHHHHhhHHHHHH
Confidence 444444333333222222 2333333333333333221 111112222333333 3333567899999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHH
Q 000511 1090 FKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169 (1455)
Q Consensus 1090 f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~ 1169 (1455)
||.|++..++|+..+..+.+......+....+.+.-..+.+. ..+.+.+.+..+ ...+.++.|......+...++.
T Consensus 230 fNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv---~~~~im~l~~~g-i~~~~mtvgdlv~~n~l~~qL~ 305 (591)
T KOG0057|consen 230 FNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSV---ALTFIMVLGSNG-IAAGKMTVGDLVMVNSLLFQLS 305 (591)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH---HHHHHHHHHhhh-hhhccccccchhhHHHHHHHHH
Confidence 999999999999999998887765544333333222222221 112222222222 2234566777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEE
Q 000511 1170 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQV 1249 (1455)
Q Consensus 1170 ~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~Gekv 1249 (1455)
.+++.+-..+.++-.++.-.+-++...+.... .... +.+.-..+|.|+|+||+|.|.|+ +++|+++||+|++||||
T Consensus 306 ~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~--i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 306 LPLNFLGSVYRELRQALTDMRTLFILLEVDED--IQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKV 381 (591)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh--hhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEE
Confidence 88998888888888777776665544322111 1111 12222346789999999999865 56999999999999999
Q ss_pred EEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHH
Q 000511 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSV 1328 (1455)
Q Consensus 1250 gIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~a 1328 (1455)
||||+|||||||++++|+|+++ ++|+|+|||+||++++++.+|+.||+||||..||++||-+||.+++. .+|||+.++
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~ 460 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEA 460 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999998875 589999999
Q ss_pred HHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEE
Q 000511 1329 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406 (1455)
Q Consensus 1329 L~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI 1406 (1455)
+++++++|.+.++ |++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|.+...++|+|
T Consensus 461 ~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 461 CKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1407 TIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1407 ~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
+|+||++++++||+|++||+|+|+|.|+|+||++ +++.|+.+|..+
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~ 586 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQ 586 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccc
Confidence 9999999999999999999999999999999999 677888888653
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=690.34 Aligned_cols=534 Identities=19% Similarity=0.188 Sum_probs=419.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1455)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (1455)
++...+.+++.++...++.++..++..++|++++.++|.+.. +.+....+.++++++++.++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888999999999999999999999997642 2222223344555666677788888888888899999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHhHHHHHHH
Q 000511 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSG 420 (1455)
Q Consensus 345 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~---lL~~~lg~a~l~g 420 (1455)
++...+...+|+|.++++...+.+.++|++.|.++.|++++.+... .+..++...+.++++++ .+.+.+++.+++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~- 171 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG- 171 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999998889999999999999999998654 45555555444433333 233333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000511 421 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYL 496 (1455)
Q Consensus 421 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~ 496 (1455)
++++...+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++ .|+.+.+..+.....
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 172 --TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333344556778888889999999999999999999999999999999988877744 444444433332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 497 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDAA---------MVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567 (1455)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~L~~~---------~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~ 567 (1455)
......+... .. +.++.++.+.+. +.++.| .+|+++.+...+..|+..++..+..+.++.++.+||.+
T Consensus 250 ~~~~~~~~~~-~~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASI-SI-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHH-HH-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 11 122233333333 334443 45666677788899999999999999999999999999
Q ss_pred HhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHH
Q 000511 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647 (1455)
Q Consensus 568 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKS 647 (1455)
+++.++.++.... ...+ ......|+++|++|.|+++ + ++|+|+||+++||+.++|+||||||||
T Consensus 327 ~l~~~~~~~~~~~-~~~~----------~~~~~~i~~~~vsf~~~~~--~---~vL~~i~l~i~~G~~vaIvG~SGsGKS 390 (588)
T PRK11174 327 FLETPLAHPQQGE-KELA----------SNDPVTIEAEDLEILSPDG--K---TLAGPLNFTLPAGQRIALVGPSGAGKT 390 (588)
T ss_pred HHcCCCcccCCCc-cccC----------CCCCceEEEEeeEEeccCC--C---eeeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 9976543211000 0000 0123469999999987642 2 359999999999999999999999999
Q ss_pred HHHHHHhcCccCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHh
Q 000511 648 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDIS 713 (1455)
Q Consensus 648 tll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~ 713 (1455)
||+++|+|++ |++|+|.++| +|+||||+||||++||||||.+|++ .+++++.++++.|+++++++
T Consensus 391 TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 391 SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 9999999999 8999999987 5999999999999999999999964 89999999999999999999
Q ss_pred hccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccc
Q 000511 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 793 (1455)
Q Consensus 714 ~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 793 (1455)
.+|+|++|.+||+|.+|||||||||+||||++++|+|+||||||||||++++++|.+. +.. +.+++|+|+||||++.+
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~-~~~~~TvIiItHrl~~i 547 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNA-ASRRQTTLMVTHQLEDL 547 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEecChHHH
Confidence 9999999999999999999999999999999999999999999999999999999886 444 55789999999999999
Q ss_pred ccCCEEEEEeCCeEEEecCHHHHHhccccCc
Q 000511 794 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824 (1455)
Q Consensus 794 ~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~ 824 (1455)
+.||+|++|++|+++++|+|+|++++.+.+.
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~ 578 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLFA 578 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHhcchHHH
Confidence 9999999999999999999999987655443
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=687.63 Aligned_cols=509 Identities=21% Similarity=0.279 Sum_probs=412.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHH
Q 000511 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1015 (1455)
Q Consensus 936 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1015 (1455)
.|+++++++.++..++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+.......+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~ 116 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLT 116 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555555555666667777777777889999999999999999999999999999999999999999998666666666
Q ss_pred HHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHH
Q 000511 1016 LLANFVGLLGIAVVL-SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED 1094 (1455)
Q Consensus 1016 ~~~~~~~~l~~~~~~-~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~ 1094 (1455)
++..++..++.++++ .+.+|.+.++++..+.+...+.+.+.+..++..+......+.+.+.+.|+++|+++||+|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 117 LVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 666554444444443 3556655544433333333344444444444444445566778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 000511 1095 YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT-MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1173 (1455)
Q Consensus 1095 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~ 1173 (1455)
.+.+++.+..++..+..+.......+..........+...++.. ..... ..+..+.|.+..+..|...+..++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv-----~~g~lt~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 197 RQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMV-----VNGSLTLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999888877776655444443333323222211111111 11111 1345678888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEEC
Q 000511 1174 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVG 1253 (1455)
Q Consensus 1174 ~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvG 1253 (1455)
.+...+.++.....+.+|+.++.+.+++........+ +.++.|+|+||+|+|+++.+++|+|+||+|+|||++||+|
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG 348 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICG 348 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEEC
Confidence 9999999999999999999999987654322111111 2356899999999998655679999999999999999999
Q ss_pred CCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHh
Q 000511 1254 RTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKC 1332 (1455)
Q Consensus 1254 rtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~ 1332 (1455)
+||||||||+++|.|+++|++|+|.+||+|+++++.+++|+++++|||+|++|+||+||||.++. ..+|++++++++.+
T Consensus 349 ~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~ 428 (569)
T PRK10789 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLA 428 (569)
T ss_pred CCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998874 46899999999999
Q ss_pred cHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEecc
Q 000511 1333 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1410 (1455)
Q Consensus 1333 ~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaH 1410 (1455)
++++++.++ |+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|++..+++|+|+|||
T Consensus 429 ~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH 508 (569)
T PRK10789 429 SVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAH 508 (569)
T ss_pred CCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999988 999999999999999999999999999999999999999999999999999999998878999999999
Q ss_pred ChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1411 RISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1411 rl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|++++..||+|++|++|+++|.|+|++|++++ +.|++|++.+
T Consensus 509 ~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~~ 550 (569)
T PRK10789 509 RLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQ 550 (569)
T ss_pred chhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHHh
Confidence 99999999999999999999999999999865 6999998743
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-69 Score=680.05 Aligned_cols=542 Identities=22% Similarity=0.295 Sum_probs=427.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000511 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1455)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1455)
++.++..++....++.+++.+|..... .....++..++++.++..+..++..........+...++++++++++++.
T Consensus 26 ~~~~~~~~~~~~~p~~~~~iid~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l 102 (585)
T TIGR01192 26 IANITLAAITIAEPILFGRIIDAISSK---SDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISM 102 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 444555556666666666655532111 11112222233333333333444444444555566666777999999999
Q ss_pred cccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1455)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~ 1061 (1455)
|++||+++++|++++|+++|++.+...+...+..++..++.+++.++++.+.+|.++++++.+.+++..+.+.+.+..++
T Consensus 103 ~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 182 (585)
T TIGR01192 103 PLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKN 182 (585)
T ss_pred CHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988777777776666666666666777778877766655555556666666666666
Q ss_pred HHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1455)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1455)
..+......+.+.+++.|+++|+++||+|+.++.+.+++.+..+...+..+.......+......++..+...++.++..
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~ 262 (585)
T TIGR01192 183 GQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGT 262 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677788899999999999999999999999999998888777666554443333333222222221111111111
Q ss_pred HhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCC-CCCccEE
Q 000511 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW-PFQGLIE 1220 (1455)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~w-p~~g~I~ 1220 (1455)
.. ...+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++.+.+++...... + ..+ +..+.|+
T Consensus 263 ~~----v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~-~~~~~~~~~i~ 336 (585)
T TIGR01192 263 VL----VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-A-PELPNVKGAVE 336 (585)
T ss_pred HH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-C-CCCCCCCCeEE
Confidence 00 013456788888888899999999999999999999999999999999876554321111 1 112 2356899
Q ss_pred EEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEe
Q 000511 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1300 (1455)
Q Consensus 1221 f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~Vp 1300 (1455)
|+||+|+|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+|+.+++.+++|+++++||
T Consensus 337 ~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 415 (585)
T TIGR01192 337 FRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVF 415 (585)
T ss_pred EEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEc
Confidence 99999999753 46999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000511 1301 QSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1455)
Q Consensus 1301 Qdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlL 1377 (1455)
|||.+|++|+||||.++. ..+|++++++++.+++++++.++ |+||.++++|.+||||||||++||||++++|+||||
T Consensus 416 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ilil 495 (585)
T TIGR01192 416 QDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVL 495 (585)
T ss_pred cCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999998874 45889999999999999999888 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1378 DEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
|||||+||.++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++. +.|+++++.+.
T Consensus 496 DEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~~~ 571 (585)
T TIGR01192 496 DEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLLRRSG 571 (585)
T ss_pred ECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHHHhCc
Confidence 99999999999999999999888899999999999999999999999999999999999999865 69999998653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=675.86 Aligned_cols=515 Identities=22% Similarity=0.284 Sum_probs=410.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhcccC-CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000511 902 LSAILMQASRNGNDLWLSYWVDTTG-SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980 (1455)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 980 (1455)
++.++..++....++.+++..|... ..........+++.++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555555321 111111223445556666777778888888888999999999999999999999
Q ss_pred CcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1060 (1455)
Q Consensus 981 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr 1060 (1455)
.|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|+++++++...++...+...+.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777777777777667777777776554433332222222222333333
Q ss_pred HHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 000511 1061 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIA-TM 1139 (1455)
Q Consensus 1061 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~ 1139 (1455)
...+......+.+.+++.|+++|+++||+|+.|+.+.+++.+..++..+..........+.....+++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556678899999999999999999999999999988888777766666666655555554443222211 11
Q ss_pred HHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccE
Q 000511 1140 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1219 (1455)
Q Consensus 1140 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1219 (1455)
..... .+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++++.++++.... +...+..+.|
T Consensus 250 ~~~~~-----~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~~~~i 321 (529)
T TIGR02857 250 GFRLL-----AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAPAPSL 321 (529)
T ss_pred HHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCCCCeE
Confidence 11111 234577888888888889999999999999999999999999999998554322111 1112234689
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+|+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v 401 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEE
Confidence 99999999986556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000511 1300 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1300 pQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILl 1376 (1455)
||||++|+|||||||.++. ..+|++++++++.++++++++++ ||||.++|+|.+||||||||++||||++++|+|+|
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred cCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998865 46889999999999999999999 99999999999999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEE
Q 000511 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1424 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl 1424 (1455)
||||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999888899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=682.66 Aligned_cols=537 Identities=21% Similarity=0.253 Sum_probs=443.0
Q ss_pred chHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1455)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1455)
.+++..++.+++.++...++.++..++.++.|++++.++|.+....+....+.++++++++.++..++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888999999999999999999999998764333344455566667777778888888888899999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000511 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 421 (1455)
Q Consensus 344 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~ 421 (1455)
.++...+...+|+|.++++...+++.+.|++++.++ |++.+.+.... +..+...++-++. +++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLN-LGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999888899999999987 78888775432 2333444444333 3333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1455)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1455)
+++++.+.+..++.+++.+..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555677788888899999999999999999999999999999999999988888877666666666555555444
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 000511 502 FFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 579 (1455)
Q Consensus 502 ~~~~~~~~--~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 579 (1455)
.+...... .+.++++|+|.+.++.+|.|.++++.+++..+..|+..++..+..+.++.++++|+.++++.++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 43333222 233456778888889999999999999999999999999999999999999999999999765422110
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000511 580 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~ 659 (1455)
. ..+ ......|+++|++|+|++++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|
T Consensus 442 ~--~~~----------~~~~~~I~~~nvsf~Y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 442 K--TDP----------GKLSGAIEVDRVTFRYRPDG----PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred c--CCC----------CCCCceEEEEEEEEEcCCCC----ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0 000 11234699999999997432 2359999999999999999999999999999999999999
Q ss_pred CCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000511 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1455)
Q Consensus 660 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~ 726 (1455)
++|+|.++| .||||||+|++|++||||||.++++.++++..++++.|+++++++.+|+|++|.+||+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 999999987 5999999999999999999999988899999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 727 g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
|.+|||||||||+||||++++|+|++||||||+||+++++++.+. +.. . ++|+|+||||++.++.||+|++|++|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LER-L--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-h--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999988 433 2 589999999999999999999999999
Q ss_pred EEEecCHHHHHhccccC
Q 000511 807 VKWIGSSADLAVSLYSG 823 (1455)
Q Consensus 807 i~~~g~~~~l~~~~~~~ 823 (1455)
|+++|+++|+.+..+.+
T Consensus 662 iv~~G~~~~Ll~~~~~y 678 (686)
T TIGR03797 662 VVQQGTYDELMAREGLF 678 (686)
T ss_pred EEEECCHHHHHhCCcHH
Confidence 99999999998765443
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-67 Score=684.26 Aligned_cols=544 Identities=20% Similarity=0.210 Sum_probs=445.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 345 (1455)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1455)
++..++.+++.++..++..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.+
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 145 LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888899999999999999999999876533333344556666667777888888888899999999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000511 346 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAIT 424 (1455)
Q Consensus 346 ~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~ 424 (1455)
+...+...+|+|.++++...+.+.++|++++.++.| +.+.++.. .+..+....+.+++.+++++..-++.+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988889999999999888 56776543 3444444444444444444443334444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1455)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1455)
++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++.+.++.+...+......+...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677788888888999999999999999999999999999999999999999988888887776666555544333
Q ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000511 505 ATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1455)
Q Consensus 505 ~~~~~--~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1455)
..... .+.++++|+|.+.++.+|.|.++++.++++.+..|+..++..+..+.++..+++|+.++++.++..+.....
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~- 462 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE- 462 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc-
Confidence 32222 234567788888889999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000511 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 662 (1455)
.... ...........++++|++|+|+..+ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|
T Consensus 463 ~~~~----~~~~~~~~~~~I~~~~vsf~y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 463 APAA----GSEPSPRLSGYVELRNITFGYSPLE----PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cccc----ccccCCCCCCeEEEEEEEEecCCCC----CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 0000 0000011235799999999997532 2359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCC-CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 663 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
+|.++| .|+||||+|++|++||||||.++. +.+++++.++++.++++++++.+|+|++|.+||+|.
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 999986 599999999999999999999875 578999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
+|||||||||+||||++++|+|+|||||||+||+++++++++.+ .. .++|+|+||||++.++.||+|++|++|+++
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l-~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL-RR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-Hh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999984 32 479999999999999999999999999999
Q ss_pred EecCHHHHHhccccC
Q 000511 809 WIGSSADLAVSLYSG 823 (1455)
Q Consensus 809 ~~g~~~~l~~~~~~~ 823 (1455)
++|+++|+++..+.+
T Consensus 691 ~~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 691 QRGTHEELWAVGGAY 705 (710)
T ss_pred EecCHHHHHHcCCcH
Confidence 999999998765443
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=676.47 Aligned_cols=535 Identities=21% Similarity=0.288 Sum_probs=444.8
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1455)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (1455)
.++..++.+++.+....++.++..++.++.|++++.++|.+....+....+.++++++++.++.+++.....+...+++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888899999999999999999999987543333344445555666677778888888888999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000511 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 422 (1455)
Q Consensus 345 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~ 422 (1455)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.+.... +..+...++.++..+++++. -++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAII-GGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 999999999999999999877 677899999998 799999986542 33344444444443334333 3334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1455)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1455)
++++.+.+..++.+++.+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778889999999999999999999999999999999999999999999999888777777776666655444
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000511 503 FWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1455)
Q Consensus 503 ~~~~~~~--~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1455)
+...... .+.++++|+|.+.++.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..+....
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 453 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR 453 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 3333322 23356778888888999999999999999999999999999999999999999999999987543211000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000511 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 660 (1455)
... .......|+++|++|+|+.. + +++|+|+||+|++||.++|+|+||||||||+++|+|+++|+
T Consensus 454 ---~~~--------~~~~~~~I~~~~vsf~Y~~~-~---~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 454 ---FLH--------RPRLQGEIEFRNVSFAYPGQ-E---TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred ---CCC--------CCCccceEEEEEEEEEeCCC-C---ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000 01123579999999999643 1 23599999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000511 661 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1455)
Q Consensus 661 ~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~ 726 (1455)
+|+|.++| .|+||+|+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+
T Consensus 519 ~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 519 EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 99999987 6999999999999999999999976 889999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 727 g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
|.+||||||||++||||++++|+|++||||||+||+++++.+.+. +.. ..+++|+|+||||++.++.||+|++|++|+
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999887 443 456899999999999999999999999999
Q ss_pred EEEecCHHHHHhc
Q 000511 807 VKWIGSSADLAVS 819 (1455)
Q Consensus 807 i~~~g~~~~l~~~ 819 (1455)
++++|+|+|+++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-66 Score=671.87 Aligned_cols=535 Identities=19% Similarity=0.191 Sum_probs=422.8
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 270 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 349 (1455)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 349 (1455)
++.+++.++...++.++..++..+.|++++.++|.+....+.......+..++++.++..++.....+...+.+.++...
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888999999999999999999998865322222222233344445555666655666667777888888
Q ss_pred HHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000511 350 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 428 (1455)
Q Consensus 350 L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~ 428 (1455)
+...+|+|.++.+...+++.++|++.|.++.|++.+.+... .+..++...+.+++++++++..-...+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88999999999999888888999999999999999987543 45555555555554444333322222233333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000511 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT- 507 (1455)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~- 507 (1455)
.+..++.++..+..++.++..++..+...|.++|+++||.|++|+.+.+++++..++-.+...+.....+.........
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888899999999999999999999999999998877777665444443333333222222221111
Q ss_pred -HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCC
Q 000511 508 -PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 586 (1455)
Q Consensus 508 -~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 586 (1455)
...+.++.+|.|.+.++.++++.+++++.+...+..|+..++..+..+.++.++.+||.+|++.++..+.... ..+
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~- 472 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCC-
Confidence 1223445677888888999999999999999999999999999999999999999999999976543221000 000
Q ss_pred cccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEE
Q 000511 587 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1455)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 666 (1455)
.+....|+++|++|+|+.+++ +++|+|+||+++|||.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 473 ---------~~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 473 ---------LNLEGLIEFQDVSFSYPNRPD---VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred ---------CCCCCeEEEEEEEEECCCCCC---CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 112356999999999975422 34699999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 667 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 667 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
+| +|+||+|+|++|++||||||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 87 5999999999999999999999964 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecC
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1455)
|||||++||||++++|+|+|||||||+||+++++.+.+. . ..+++|+|+||||++.++.||+|++|++|+|+++|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~-~---~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-R---SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh-h---ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 999999999999999999999999999999999988872 2 346899999999999999999999999999999999
Q ss_pred HHHHHhccccC
Q 000511 813 SADLAVSLYSG 823 (1455)
Q Consensus 813 ~~~l~~~~~~~ 823 (1455)
|+|++++.+.+
T Consensus 697 ~~eL~~~~~~y 707 (711)
T TIGR00958 697 HKQLMEDQGCY 707 (711)
T ss_pred HHHHHhCCCch
Confidence 99998765443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=657.61 Aligned_cols=523 Identities=19% Similarity=0.217 Sum_probs=405.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000511 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1455)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1455)
+.++........++.++...|.............++.+++++.++..++.+++.+.....+.+....++.++++++++.|
T Consensus 14 ~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 93 (544)
T TIGR01842 14 FSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSAT 93 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33444445555566666555532111111122334455555666677778888888888999999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhhhhhcchhH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPF-ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1455)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~ 1061 (1455)
+.. .+...+++++|++.+.+.+.. .+..++..++.++. ++++++.+|++.++++...+++..+..+..+..+.
T Consensus 94 ~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~ 167 (544)
T TIGR01842 94 LRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHPWIGILALGGAVVLVGLALLNNRATKK 167 (544)
T ss_pred ccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 842 356789999999999877655 34444444444333 34556666665544332222222233333333333
Q ss_pred HHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000511 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIA-TMA 1140 (1455)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~~ 1140 (1455)
..+...+..+...+++.|+++|+++||+|+.|+.+.+++.+..++..+..+.......+......++..+...++. +..
T Consensus 168 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 247 (544)
T TIGR01842 168 PLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGA 247 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667778899999999999999999999999999988887776655444443333333332221111111 111
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEE
Q 000511 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1220 (1455)
Q Consensus 1141 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1220 (1455)
... ..+..++|.+..++.+...+..++..+...+.++.....+.+|+.++++.++|+.... .. -+..+.|+
T Consensus 248 ~l~-----~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~---~~~~~~i~ 318 (544)
T TIGR01842 248 YLA-----IDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PL---PEPEGHLS 318 (544)
T ss_pred HHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CC---CCCCCeEE
Confidence 111 1345678988888999999999999999999999999999999999998766532111 11 12356899
Q ss_pred EEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEe
Q 000511 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1300 (1455)
Q Consensus 1221 f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~Vp 1300 (1455)
++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+.+++.+.+|+++++||
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 99999999765568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000511 1301 QSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1455)
Q Consensus 1301 Qdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlL 1377 (1455)
|||++|++|+|||+.++++ .+|++++++++.++++++++++ |+||.++++|.+||||||||++||||++++|+||||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999986654 7899999999999999999999 999999999999999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhc
Q 000511 1378 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1378 DEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
|||||+||.++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||++
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999998875 6899999999999999999999999999999999999976
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-67 Score=709.26 Aligned_cols=555 Identities=19% Similarity=0.255 Sum_probs=431.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973 (1455)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 973 (1455)
+..+++.+++.++..++....++.+...++... .......++..+++++++..++.+++.+++.+.+.+...+++.+
T Consensus 59 ~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~ 135 (1466)
T PTZ00265 59 RKLLGVSFVCATISGGTLPFFVSVFGVIMKNMN---LGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLE 135 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444555555554321 11123345556667777788888999999999999999999999
Q ss_pred HHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1053 (1455)
Q Consensus 974 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~ 1053 (1455)
++++++++|++|||..+.|++.+|++.|++.+...+...+..++..++.+++.++++++.+|.++++++.++.+++.+..
T Consensus 136 ~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~ 215 (1466)
T PTZ00265 136 FLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGV 215 (1466)
T ss_pred HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988899999988888888888888888776655544444444444
Q ss_pred HHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1133 (1455)
Q Consensus 1054 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1133 (1455)
.+.+..+...+......+...+.+.|+++|++|||+|+.|+.+.++|.+..+...+..+.......+......++..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 295 (1466)
T PTZ00265 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASY 295 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555678899999999999999999999999999988888777766554444332222222221111
Q ss_pred HHH---HHHHHHhhc-CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCC
Q 000511 1134 SFI---ATMAVIGSR-GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL 1209 (1455)
Q Consensus 1134 ~~~---~~~~v~~~~-~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~ 1209 (1455)
.++ +...++... .....+..++|.+...+.+.+.....+..+...+..+..+..|.+|+.+.++.+++..... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~--~ 373 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND--D 373 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 111 111111000 0000112345544444444444344456667788899999999999999998766532111 1
Q ss_pred CCCCCCCccEEEEEEEEEecCCC-CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEE-CCEeCCCC
Q 000511 1210 SPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DGLNIINT 1287 (1455)
Q Consensus 1210 ~~~wp~~g~I~f~nvs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~I-dG~di~~i 1287 (1455)
....|..+.|+|+||+|+|+... .++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|.+ ||.|++++
T Consensus 374 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI 453 (1466)
T ss_pred CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC
Confidence 11123345899999999997532 46999999999999999999999999999999999999999999999 67999999
Q ss_pred ChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-------------------------------------------------
Q 000511 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH------------------------------------------------- 1318 (1455)
Q Consensus 1288 ~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~------------------------------------------------- 1318 (1455)
+.+++|++|++|||+|.+|++||+|||.++.
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 9999999999999999999999999997642
Q ss_pred ---------CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHH
Q 000511 1319 ---------MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387 (1455)
Q Consensus 1319 ---------~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~ 1387 (1455)
..+|++++++++.++++++++.+ |+||.++++|.+||||||||++||||++++|+|||||||||+||++
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 23678999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCC--------------------------------------
Q 000511 1388 TASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHG-------------------------------------- 1427 (1455)
Q Consensus 1388 te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G-------------------------------------- 1427 (1455)
+++.|++.|++.. +++|+|+||||+++++.||+|+||++|
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNN 693 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccc
Confidence 9999999999875 489999999999999999999999986
Q ss_pred ---------eEEEeCChhHHhccCCcHHHHHHHhh
Q 000511 1428 ---------HLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1428 ---------~ive~G~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
+|+|+|+|+||+++++|.|+.|++.+
T Consensus 694 ~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 694 NNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred ccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986778999999765
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-69 Score=600.78 Aligned_cols=487 Identities=25% Similarity=0.389 Sum_probs=396.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhH-HHHHHH
Q 000511 958 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL-SYVQVF 1036 (1455)
Q Consensus 958 ~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~-~~~~~~ 1036 (1455)
++...+..+.+.+--+.|.++.+..+.|.-+..+|-+..-......-|+..+-..+.+.+..++-+....+++ ....||
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 4455566667777778888999999999888777765444444444444444444444444444433333322 234577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1037 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116 (1455)
Q Consensus 1037 ~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1455)
++++.+..+++|.++......-.-..||.-..+.+..++.-.+++-+.+|+|.||.|+++..+|.+.++.++++......
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 77766666655554433222222233444455555666777899999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000511 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1455)
Q Consensus 1117 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~ 1196 (1455)
.-.|+++.-..+..........+... ....+.++.|.+...-.+..+++.+++.+-..+.++.++....|+..+..
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~----~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSAL----GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHH----HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 77777765554433222211111111 11245677889999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCC-CCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 000511 1197 DVPQEELCGYQSLSPDWP-FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1455)
Q Consensus 1197 ~~~~e~~~~~~~~~~~wp-~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1275 (1455)
+.+.|....+ ..++-|| ..|.|.|+||+|.|.+. .|+|+|+||++++|+++||||++|+||||+..+|+|||++++|
T Consensus 241 ~~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCC-CCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 8877653322 2344564 46899999999999876 4799999999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCC
Q 000511 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1352 (1455)
Q Consensus 1276 ~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~ 1352 (1455)
+|.|||.||.++..+.+|+.||+||||.+||+.|+..|+.++++ .+++|++.|++.+++.++++.+ |+||.|||.|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999998875 5899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEe
Q 000511 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432 (1455)
Q Consensus 1353 ~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1432 (1455)
.||||||||+++||++|++|+||+||||||+||..||+.||..|++..+++|.++|||||+||.++|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHhccCCcHHHHHHH
Q 000511 1433 GNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1433 G~p~eLl~~~~s~f~~l~~ 1451 (1455)
|+|+||+++ +|.|++||.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999997 689999986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-68 Score=629.91 Aligned_cols=475 Identities=25% Similarity=0.379 Sum_probs=358.6
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC----CcEEEEcC--------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT----HGSIHASG-------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~----~G~i~~~~-------- 668 (1455)
.++++|.+..+.... .+ ..+++|+||++.+||.++|||.|||||||+.++|.|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~-~~-~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATDG-GR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecCC-cc-eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 578999998887652 22 35799999999999999999999999999999999999887 89998776
Q ss_pred ---------cEEEEcCCCC-CCCc--CHHHHhc----cCCCC-CH---HHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 669 ---------SIAYVPQVPW-ILSG--TIRDNIL----FGKNY-DP---QSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 669 ---------~i~y~~Q~p~-l~~~--ti~~nI~----~g~~~-~~---~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
.|||++|+|+ .+|. ||.+-|. ..... .+ ++..+.++..+|.+.... .....
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCc
Confidence 5999999997 5554 7776664 22222 12 233444555555433221 45677
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 807 (1455)
.|||||||||.||+||..+|+++|+||||+|||+.+..+|++.+.......|.++|+|||++..+.+ ||+|+||.+|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999987322213457799999999999876 999999999999
Q ss_pred EEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHH
Q 000511 808 KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 887 (1455)
Q Consensus 808 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 887 (1455)
+|.|+.+++..+...- |
T Consensus 234 VE~G~~~~i~~~p~hp-------------------------------------------------------------Y-- 250 (539)
T COG1123 234 VETGPTEEILSNPQHP-------------------------------------------------------------Y-- 250 (539)
T ss_pred EEecCHHHHHhccCCc-------------------------------------------------------------c--
Confidence 9999999886432100 0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 888 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 967 (1455)
Q Consensus 888 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1455)
-+. + |.. .+....
T Consensus 251 -T~~----------L------------------l~a-----~p~~~~--------------------------------- 263 (539)
T COG1123 251 -TRG----------L------------------LAA-----VPRLGD--------------------------------- 263 (539)
T ss_pred -cHH----------H------------------Hhh-----CCCccc---------------------------------
Confidence 000 0 000 000000
Q ss_pred HHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000511 968 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1047 (1455)
Q Consensus 968 ~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~ 1047 (1455)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQL 1127 (1455)
Q Consensus 1048 ~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~ 1127 (1455)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCC
Q 000511 1128 LAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1207 (1455)
Q Consensus 1128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~ 1207 (1455)
. ... ..+.+
T Consensus 264 -------------------~-~~~---------------------------------------------~~~~~------ 272 (539)
T COG1123 264 -------------------E-KII---------------------------------------------RLPRR------ 272 (539)
T ss_pred -------------------c-ccc---------------------------------------------ccccc------
Confidence 0 000 00000
Q ss_pred CCCCCCCCCccEEEEEEEEEecCC---------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEE
Q 000511 1208 SLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1455)
Q Consensus 1208 ~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1455)
.+. +....++++|++.+|... ...+++||||++++||.+||||.||||||||.++|+|+.+|++|+|.
T Consensus 273 ~~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~ 349 (539)
T COG1123 273 GPL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349 (539)
T ss_pred ccc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 000 012358899999999741 24689999999999999999999999999999999999999999999
Q ss_pred ECCEe--CCCCChHHHhcccEEEeCCCCC--C-CCcHHHhcC-cCCCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCC
Q 000511 1279 VDGLN--IINTPVRDLRGRFAVVPQSPFL--F-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESG 1351 (1455)
Q Consensus 1279 IdG~d--i~~i~~~~lR~~i~~VpQdp~l--f-~gTIreNLd-p~~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G 1351 (1455)
++|.| .+.-+...+|+++-+|.|||+- - ..||+++|. |...+.... .+-.+..+.+.++..||.. .++...
T Consensus 350 ~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred EeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99977 3433456688899999999973 2 359999984 322111100 1111112333333336665 356667
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCe
Q 000511 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1428 (1455)
Q Consensus 1352 ~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1428 (1455)
..||||||||+||||||..+|++||+|||||+||+-+.+.|.+.|.+.-+ +.|.|+|||++..++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 78999999999999999999999999999999999999999999876542 7999999999999987 99999999999
Q ss_pred EEEeCChhHHhccCCcHHHHHHHh
Q 000511 1429 LVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1429 ive~G~p~eLl~~~~s~f~~l~~~ 1452 (1455)
|||.|+.++..+++...|.+.+.+
T Consensus 508 iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 508 IVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999999988788776544
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=669.28 Aligned_cols=535 Identities=21% Similarity=0.249 Sum_probs=434.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1455)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 347 (1455)
..++.+++.++...+..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788888889999999999999999999987643333333445555666677778888888888899999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000511 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-F-HDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425 (1455)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~-~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~ 425 (1455)
..+...+|+|.++++...+++.+.|++++.++ |.+.+.+.... + ..+...++.++..+++++....+ +++.+++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL-FLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHH
Confidence 99999999999999999988899999999998 99988875432 2 22334444443333343333322 333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 505 (1455)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 505 (1455)
+.+.+..++.+++++..++.++..+++.+...|.++|+++||.+|+|+.+.+++++..++..+...+..........+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677888888999999999999999999999999999999999999888877766555555544444333332222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcC
Q 000511 506 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 583 (1455)
Q Consensus 506 ~~~--~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 583 (1455)
... ..+.++++|+|.+.++.+|+|.++++.++...+..|+..+...+..+.+++++++|+.++++.++..+.... .
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~--~ 464 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKK--R 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc--c
Confidence 221 223456788898899999999999999999999999999999999999999999999999976543221100 0
Q ss_pred CCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE
Q 000511 584 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 663 (1455)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 663 (1455)
.+ .......|+++|++|+|+.+ . ++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+
T Consensus 465 ~~---------~~~~~~~I~~~~vsf~y~~~--~---~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 465 TE---------LNNLNGDIVINDVSYSYGYG--S---NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred cC---------CCCCCCcEEEEEEEEEcCCC--C---cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 00 01223579999999999632 2 3599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCcCHHHHhccCC--CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 664 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 664 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
|.++| .|+||||+|++|++||||||.+|. +.++++..++++.++++++++.+|+|++|.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99987 599999999999999999999983 478889999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
+|||||||||+||||++++|+|+|||||||+||+++++++.+.+ .. .+++|+|+||||++.+..||+|++|++|+++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HH--hcCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998874 43 3679999999999999999999999999999
Q ss_pred EecCHHHHHhccccC
Q 000511 809 WIGSSADLAVSLYSG 823 (1455)
Q Consensus 809 ~~g~~~~l~~~~~~~ 823 (1455)
+.|+++|+++..+.+
T Consensus 688 ~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 688 EQGSHDELLDRNGFY 702 (708)
T ss_pred EECCHHHHHhcCCcH
Confidence 999999998765443
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=646.74 Aligned_cols=539 Identities=18% Similarity=0.202 Sum_probs=429.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 267 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 346 (1455)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1455)
+..++.+++.++..++..++..++..+.|++++.+++.+..+........++.+++++.++..++.....+...+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 96 (582)
T PRK11176 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777777888899999999987654322222222333344455666666666667788889999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000511 347 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425 (1455)
Q Consensus 347 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~ 425 (1455)
...+...+|+|.++++.....+.+.|++++.++.|++.+.+.. ..+..++..++.+++.+.+++..-++.+++.+++++
T Consensus 97 ~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 176 (582)
T PRK11176 97 VMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888999999999999999998743 345555666665555554444433333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 505 (1455)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 505 (1455)
+.+.+..++.+++++..++.++..++..+...|.++|+++||.+|+|+.+.+++++.-++-.+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T PRK11176 177 IVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667788888888999999999999999999999999999999988888877655444444444443333322222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcC
Q 000511 506 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 583 (1455)
Q Consensus 506 ~~~--~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 583 (1455)
... ..+.++.++.|.+..+.++++.+.++++++..+..|+..+...+..+.+++.+++|+.++++.++..+....
T Consensus 257 ~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~--- 333 (582)
T PRK11176 257 LIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR--- 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---
Confidence 222 223445667777778899999999999999999999999999999999999999999999976543211000
Q ss_pred CCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE
Q 000511 584 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 663 (1455)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 663 (1455)
. .+.....++++|++|+|++. + +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+
T Consensus 334 -~---------~~~~~~~i~~~~vsf~y~~~-~---~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 334 -V---------IERAKGDIEFRNVTFTYPGK-E---VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred -C---------CCCCCCeEEEEEEEEecCCC-C---CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 0 01123469999999999643 1 23599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCcCHHHHhccCC--CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 664 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 664 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
|.++| .|+||||+|.+|++||||||.+|. ++++++++++++.++++++++.+|+|++|.+|++|.
T Consensus 400 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~ 479 (582)
T PRK11176 400 ILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGV 479 (582)
T ss_pred EEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCC
Confidence 99986 589999999999999999999985 378999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
+||||||||++||||+|++|+|++|||||||||+++++.+++. +.. +.+++|+|+||||++.++.||+|++|++|+++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~ 557 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999887 433 44679999999999999999999999999999
Q ss_pred EecCHHHHHhccccCc
Q 000511 809 WIGSSADLAVSLYSGF 824 (1455)
Q Consensus 809 ~~g~~~~l~~~~~~~~ 824 (1455)
++|+++++++..+.+.
T Consensus 558 e~g~~~~l~~~~~~y~ 573 (582)
T PRK11176 558 ERGTHAELLAQNGVYA 573 (582)
T ss_pred EeCCHHHHHhCCChHH
Confidence 9999999987655443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=643.64 Aligned_cols=535 Identities=20% Similarity=0.229 Sum_probs=438.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 267 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 346 (1455)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (1455)
+.+++.+++.++...++.++..++...+|++++.+++...........+.++++++++.++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888889999999999999999999986554332223333344455566677777777778888999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000511 347 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425 (1455)
Q Consensus 347 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~ 425 (1455)
...+...+|+|.++.+.....+.+.|++.+.++.|++++.+... .+..++...+.+++++.+++..-.+.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999888888999999999999999987553 45555555555444444433332333333444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 505 (1455)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 505 (1455)
+.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888888999999999999999999999999999999999998888888776666655555444444333322
Q ss_pred HHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcC
Q 000511 506 TTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 583 (1455)
Q Consensus 506 ~~~~--~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 583 (1455)
.... .+.++.+|.+.+..+.+|++.+++++.+++.+..|+..+...+..+.+++++++|+.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---- 321 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---- 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----
Confidence 2222 2345567778888899999999999999999999999999999999999999999999997654322100
Q ss_pred CCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE
Q 000511 584 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 663 (1455)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~ 663 (1455)
.+. +.....++++|++|+|++.+ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+
T Consensus 322 ~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 322 RAI---------ERARGDVEFRNVTFRYPGRD----RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred CCC---------CCCCCeEEEEEEEEEcCCCC----CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 000 11234699999999997532 24599999999999999999999999999999999999999999
Q ss_pred EEEcC-------------cEEEEcCCCCCCCcCHHHHhccCC--CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 664 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 664 i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
|.++| .++||||+|++|++||||||.++. +.++++..++++.|++++++..+|+|.+|.+|++|.
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 99987 499999999999999999999985 588999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
+||||||||++||||++++|+|++||||||+||+++++++.+. +.. ..+++|+|+|||+.+.++.||+|++|++|+++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999887 443 45689999999999999999999999999999
Q ss_pred EecCHHHHHhcc
Q 000511 809 WIGSSADLAVSL 820 (1455)
Q Consensus 809 ~~g~~~~l~~~~ 820 (1455)
+.|+++++.+..
T Consensus 547 ~~g~~~~l~~~~ 558 (571)
T TIGR02203 547 ERGTHNELLARN 558 (571)
T ss_pred eeCCHHHHHHcC
Confidence 999999997653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-66 Score=658.72 Aligned_cols=492 Identities=22% Similarity=0.306 Sum_probs=354.7
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
+..++++|++++|..... ..++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 10 ~~~l~v~~l~~~y~~~~~--~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQ--KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCCC--ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 346899999999963211 12469999999999999999999999999999999999999999987643
Q ss_pred -----------------cEEEEcCCC--CCCC-cCHHHHhccCC----CCCH----HHHHHHHHHhcchHHHhhccCCCc
Q 000511 669 -----------------SIAYVPQVP--WILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDM 720 (1455)
Q Consensus 669 -----------------~i~y~~Q~p--~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~l~~gd~ 720 (1455)
.||||+|+| -++. .||+|||.++. ..+. ++..++++..++.. . .
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-------~-~ 159 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE-------A-Q 159 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC-------h-h
Confidence 489999998 4554 59999998752 1222 23444555555521 0 1
Q ss_pred ccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcccccc-CCE
Q 000511 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADM 798 (1455)
Q Consensus 721 t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~ 798 (1455)
........+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+. +.... ..|+|+|+|||+++.+.. ||+
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 123456679999999999999999999999999999999999998888775 33311 237899999999998764 999
Q ss_pred EEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcC
Q 000511 799 VVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 878 (1455)
Q Consensus 799 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 878 (1455)
|++|++|++++.|+++++...... .+ ...
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~~~~------~~-----------------------------------~~~---------- 267 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQH------PY-----------------------------------TRA---------- 267 (623)
T ss_pred EEEeeCCeecccCCHHHhhcCCCC------hh-----------------------------------hhh----------
Confidence 999999999998887765321000 00 000
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000511 879 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 958 (1455)
Q Consensus 879 ~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 958 (1455)
++. ..+. +..+.
T Consensus 268 ---------l~~---------------------~~~~--~~~~~------------------------------------ 279 (623)
T PRK10261 268 ---------LLA---------------------AVPQ--LGAMK------------------------------------ 279 (623)
T ss_pred ---------hhh---------------------ccCc--ccccc------------------------------------
Confidence 000 0000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 000511 959 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1038 (1455)
Q Consensus 959 ~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 1038 (1455)
|+ .++
T Consensus 280 ---------------------------------~~--------------~~~---------------------------- 284 (623)
T PRK10261 280 ---------------------------------GL--------------DYP---------------------------- 284 (623)
T ss_pred ---------------------------------cc--------------cCC----------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1039 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118 (1455)
Q Consensus 1039 l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 1118 (1455)
.+.|.. +
T Consensus 285 ------------------------------~~~~~~----~--------------------------------------- 291 (623)
T PRK10261 285 ------------------------------RRFPLI----S--------------------------------------- 291 (623)
T ss_pred ------------------------------cccccc----c---------------------------------------
Confidence 000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 000511 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1455)
Q Consensus 1119 ~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~ 1198 (1455)
.. . .. .. .
T Consensus 292 ---------------------~~---~-~~-~~----------------------------------------------~ 299 (623)
T PRK10261 292 ---------------------LE---H-PA-KQ----------------------------------------------E 299 (623)
T ss_pred ---------------------cc---c-cc-cc----------------------------------------------C
Confidence 00 0 00 00 0
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCC---------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcC
Q 000511 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1199 ~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl 1269 (1455)
+.+. . ...+ +....++++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+
T Consensus 300 ~~~~-~--~~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 300 PPIE-Q--DTVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred cccc-c--cccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 0000 0 0000 012259999999999621 13699999999999999999999999999999999999
Q ss_pred CCCCCceEEECCEeCCCCChH---HHhcccEEEeCCCC--CCCC-cHHHhcCcC----CCCChHHHHHHHHHhcHHHHHH
Q 000511 1270 TPICGGQILVDGLNIINTPVR---DLRGRFAVVPQSPF--LFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVE 1339 (1455)
Q Consensus 1270 ~~~~~G~I~IdG~di~~i~~~---~lR~~i~~VpQdp~--lf~g-TIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~ 1339 (1455)
++|++|+|.++|.++...+.. .+|++++||||+|. +++. |+++|+... +....++.. ....+.++
T Consensus 374 ~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~ 448 (623)
T PRK10261 374 VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLE 448 (623)
T ss_pred CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 999999999999999877643 45788999999983 6654 999998531 111111111 11233444
Q ss_pred hCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh
Q 000511 1340 AVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1416 (1455)
Q Consensus 1340 ~lgLd-t~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~ 1416 (1455)
.+|++ .........||||||||++|||||+.+|+|||||||||+||..+.+.+.+.|++.. .+.|||+|||+++.+.
T Consensus 449 ~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~ 528 (623)
T PRK10261 449 RVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVE 528 (623)
T ss_pred HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 45775 34555667899999999999999999999999999999999999999999998764 3789999999999987
Q ss_pred h-hCEEEEEeCCeEEEeCChhHHhccCCcHHH-HHHH
Q 000511 1417 N-MDEILILDHGHLVEQGNPQTLLQDECSVFS-SFVR 1451 (1455)
Q Consensus 1417 ~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~-~l~~ 1451 (1455)
. ||||++|++|+|+|.|+++++..++...|. .++.
T Consensus 529 ~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 529 RISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred HhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 6 899999999999999999999877655453 3443
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-63 Score=634.95 Aligned_cols=541 Identities=18% Similarity=0.218 Sum_probs=425.5
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1455)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (1455)
.++.+++.+++.++...++.++..++.++.|++++.++|.+-.+.+......+++.++++.++..++...+.+...+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888889999999999999999999974322222222223333444445555666667788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHH
Q 000511 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVA-LYLLYTQVKFAFVSGLA 422 (1455)
Q Consensus 345 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~-~~lL~~~lg~a~l~g~~ 422 (1455)
++...+...+|+|.++.+.....+.+.|++.+.++.|++.+.+... .+..++...+.++++ +++++....++.++.+
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~- 166 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL- 166 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-
Confidence 9999999999999999999888888899999999999999987643 344444444333333 2333333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1455)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1455)
.+++.+.+..++.+++++..+++++..++..+...|.++|+++||.+++|+.+.+++++..++..+...+......+...
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334456788888899999999999999999999999999999999998888887766555554444433333222
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000511 503 FWATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1455)
Q Consensus 503 ~~~~~--~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1455)
+.... ...+.++.+|++.+..+.++++.++++..+...+..|+..++..+..+.+++.+++||.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 22111 2233445677888888899999999999999999999999999999999999999999999976532110000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000511 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 660 (1455)
. ...+ ......++++|++|+|+.+++ +++|+|+||+++|||.++|+|++|||||||+++|+|+++|.
T Consensus 327 ~-~~~~---------~~~~~~i~~~~v~f~y~~~~~---~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~ 393 (576)
T TIGR02204 327 P-KTLP---------VPLRGEIEFEQVNFAYPARPD---QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393 (576)
T ss_pred C-ccCC---------cCCCceEEEEEEEEECCCCCC---CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 0 0000 012346999999999975322 24599999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000511 661 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1455)
Q Consensus 661 ~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~ 726 (1455)
+|+|.++| .++||||+|++|++||||||.++.+ .++++..++++.+++.++++.+|+|++|.+|++
T Consensus 394 ~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred CCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 99999987 5999999999999999999999864 577889999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 727 g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
|.+||||||||++||||++++|++++||||||+||+++++.+++. +.. ..+++|+|+|||+.+.++.+|+|++|++|+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LET-LMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999988876 443 456899999999999999999999999999
Q ss_pred EEEecCHHHHHhccc
Q 000511 807 VKWIGSSADLAVSLY 821 (1455)
Q Consensus 807 i~~~g~~~~l~~~~~ 821 (1455)
+++.|+++++.+..+
T Consensus 552 ~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 552 IVAQGTHAELIAKGG 566 (576)
T ss_pred EEeeecHHHHHHcCC
Confidence 999999999876543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=628.32 Aligned_cols=504 Identities=20% Similarity=0.182 Sum_probs=391.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1455)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 347 (1455)
.+.+.+++.++...++.++..++..+.|++++.++|.+.........+.+.++++++.++..++.....+...+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777778888899999999999999999876542221111111222223445566666666777788899999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Q 000511 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAI 423 (1455)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~i~~~l---L~~~lg~a~l~g~~v 423 (1455)
..+...+|+|.++++...+.+.++|++++.++.|++++.+.... +..+....+.+++++.+ +.+.+++.++++++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~- 164 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL- 164 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence 99999999999999999998999999999999999999876543 34444444433333332 33333333333222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 424 TILLIPVN-KWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1455)
Q Consensus 424 ~~~~~~~~-~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1455)
++..+. .+..+..++..++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+.....+....
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02868 165 --LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAA 242 (529)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222 23334345566777788899999999999999999999999999999988776666665555555544433
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000511 503 FWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1455)
Q Consensus 503 ~~~~~~~--~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1455)
+...... .+.++.+|.|.+.++.++++.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 322 (529)
T TIGR02868 243 AQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV 322 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence 3322222 23345667788888899999999999999999999999999999999999999999999976543211000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000511 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 660 (1455)
..+. ........|+++|++|+|+++ + ++|+|+||++++||.++|+||+|||||||+++|+|+++|+
T Consensus 323 --~~~~-------~~~~~~~~I~~~~vsf~Y~~~--~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 323 --PAAG-------ALGLGKPTLELRDLSFGYPGS--P---PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred --CCCc-------ccCCCCceEEEEEEEEecCCC--C---ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 0000 001123469999999999743 2 2599999999999999999999999999999999999999
Q ss_pred CcEEEEcC------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000511 661 HGSIHASG------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1455)
Q Consensus 661 ~G~i~~~~------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g 727 (1455)
+|+|.++| .|+||||+|++|++||||||.+|.+ .+++++.++++.|+++++++.+|+|++|.+||+|
T Consensus 389 ~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 389 QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred CcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 99999998 7999999999999999999999864 6889999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCc
Q 000511 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790 (1455)
Q Consensus 728 ~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~ 790 (1455)
.+||||||||++||||++++|+|++||||||+||+++++.|.+.+ .. ..+++|+|+||||+
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LA-ALSGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH-hcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999884 43 56789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=635.34 Aligned_cols=532 Identities=18% Similarity=0.219 Sum_probs=414.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD--GYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 345 (1455)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 345 (1455)
..++.+++.++...++.++..++..+.|+++..++|.+..+.+... ...+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777778888899999999999999999997754222111 12223334445556667777777788889999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHH-HH--HHHhHHHHHHHH
Q 000511 346 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALY-LL--YTQVKFAFVSGL 421 (1455)
Q Consensus 346 ~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~i~~~-lL--~~~lg~a~l~g~ 421 (1455)
+...+...+|+|.++.+...+.+.+.|+++|.++.|++++.+.... +..+....+.+++.+. ++ .+.+++..+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~- 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMI- 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998888889999999999999999875443 3333333333333222 22 22333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000511 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC- 500 (1455)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~- 500 (1455)
+++.+.+..+..++..+..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+........
T Consensus 175 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 175 --FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344555666677777777888888899999999999999999999999888877655444433322222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000511 501 ---VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1455)
Q Consensus 501 ---~~~~~~~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1455)
..+......+..++. +.+ +..+.++.+.+++++.++..+..|+..++..+..+.++..+.+||.++++.++.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 253 RPLLSLFSALILCGLLML-FGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 111111111111222 223 356789999999999999999999999999999999999999999999975432111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000511 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 657 (1455)
.. .. ......++++|++|+|+.+ . ++|+|+||++++||.++|+|+||||||||+++|+|++
T Consensus 331 ~~---~~-----------~~~~~~i~~~~v~f~y~~~--~---~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 331 ND---DR-----------PLQSGRIDIDNVSFAYRDD--N---LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CC---cc-----------CCCCCeEEEEEEEEEeCCC--C---ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 00 00 1123469999999999732 2 3599999999999999999999999999999999999
Q ss_pred cCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCccccc
Q 000511 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724 (1455)
Q Consensus 658 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig 724 (1455)
+|++|+|.++| .|+||||+|++|++||||||.+|++.++++..+++++++++++++.+|+|++|.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99999999987 49999999999999999999999988999999999999999999999999999999
Q ss_pred CCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeC
Q 000511 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804 (1455)
Q Consensus 725 ~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1455)
++|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. +.+++|+|+||||++.++.||+|++|++
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAA-VREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999887 433 4467999999999999999999999999
Q ss_pred CeEEEecCHHHHHhccccCcc
Q 000511 805 GQVKWIGSSADLAVSLYSGFW 825 (1455)
Q Consensus 805 G~i~~~g~~~~l~~~~~~~~~ 825 (1455)
|++++.|+++|+++..+.+..
T Consensus 550 G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CEEEEEcCHHHHHhCCCHHHH
Confidence 999999999999876554443
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-63 Score=640.62 Aligned_cols=540 Identities=19% Similarity=0.224 Sum_probs=438.4
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1455)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (1455)
.++..++.+++.+...++..++..++.++.|++++.++|.+-...+....+.++++++++.++..++.....+...+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788888899999999999999999999987543333344455566666777788888888889999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000511 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAW-SLPFQIGVALYLLYTQVKFAFVSGLA 422 (1455)
Q Consensus 345 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~-~~pl~i~i~~~lL~~~lg~a~l~g~~ 422 (1455)
++...+...+|+|.++++...+.+.++|++++.+ .|++.+.+... .+..+. ..++-++. +.+++..-++.+++.++
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~l~ 286 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGVVIG 286 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 59999987643 333333 33333333 22332322223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1455)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1455)
++++...+..++.+++++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+..........
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR01846 287 SLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQ 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667778888888889999999999999999999999999999999988888776666665555555444433
Q ss_pred HHHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000511 503 FWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1455)
Q Consensus 503 ~~~~~~--~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1455)
+..... ..+.++++|+|.+..+.+|+|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. .
T Consensus 367 ~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~ 445 (694)
T TIGR01846 367 AIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-G 445 (694)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-C
Confidence 332222 2234567888888888999999999999999999999999999999999999999999999765432110 0
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000511 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~ 660 (1455)
... .+..+..++++|++|+|++++ +++|+|+||++++|+.++|+|+||||||||+++|+|+++|+
T Consensus 446 ---~~~--------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~ 510 (694)
T TIGR01846 446 ---LAA--------LPELRGAITFENIRFRYAPDS----PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ 510 (694)
T ss_pred ---CCC--------CCCCCCeEEEEEEEEEcCCCC----ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000 012235699999999997432 23599999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCC-CCCHHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000511 661 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1455)
Q Consensus 661 ~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~ 726 (1455)
+|+|.++| .|+||+|+|++|++||+|||.++. ..++++..++++.++++++++.+|+|.+|.+|++
T Consensus 511 ~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 511 HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred CceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 99999987 489999999999999999999976 4778899999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 727 g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
|.+||||||||++||||++++|+|+|||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|+
T Consensus 591 g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~ 668 (694)
T TIGR01846 591 GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQ 668 (694)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999887 433 456899999999999999999999999999
Q ss_pred EEEecCHHHHHhccccCc
Q 000511 807 VKWIGSSADLAVSLYSGF 824 (1455)
Q Consensus 807 i~~~g~~~~l~~~~~~~~ 824 (1455)
++++|+++++++..+.+.
T Consensus 669 i~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 669 IAESGRHEELLALQGLYA 686 (694)
T ss_pred EEEeCCHHHHHHcCChHH
Confidence 999999999987655443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-65 Score=643.99 Aligned_cols=455 Identities=25% Similarity=0.342 Sum_probs=344.7
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 668 (1455)
.++++|++++|+.... ..++|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQT--VRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecCCCC--ceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 4789999999863211 12469999999999999999999999999999999999986 799998754
Q ss_pred ----------cEEEEcCCCC--CCC-cCHHHHhccCC----CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000511 669 ----------SIAYVPQVPW--ILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1455)
Q Consensus 669 ----------~i~y~~Q~p~--l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g 727 (1455)
.++|++|+|. ++. .|+++|+.++. ..+. ++..++++.+++.... .......
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCC
Confidence 4899999985 443 59999986421 1222 3445566666664210 0123456
Q ss_pred CccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCC
Q 000511 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKG 805 (1455)
Q Consensus 728 ~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G 805 (1455)
.+|||||||||+||||++.+|+++||||||++||+...+++.+. +..... .++|+|+|||+++.+.. ||+|++|++|
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 68999999999999999999999999999999999999988875 332112 37899999999998764 9999999999
Q ss_pred eEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHH
Q 000511 806 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 885 (1455)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 885 (1455)
++++.|+++++.... . . . +
T Consensus 234 ~i~~~g~~~~~~~~~--------------------------------------------~------------~--~---~ 252 (529)
T PRK15134 234 RCVEQNRAATLFSAP--------------------------------------------T------------H--P---Y 252 (529)
T ss_pred EEEEeCCHHHHhhCC--------------------------------------------C------------C--H---H
Confidence 999887765542100 0 0 0 0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 886 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 965 (1455)
Q Consensus 886 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1455)
.+
T Consensus 253 ---~~--------------------------------------------------------------------------- 254 (529)
T PRK15134 253 ---TQ--------------------------------------------------------------------------- 254 (529)
T ss_pred ---HH---------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000511 966 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1045 (1455)
Q Consensus 966 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~ 1045 (1455)
T Consensus 255 -------------------------------------------------------------------------------- 254 (529)
T PRK15134 255 -------------------------------------------------------------------------------- 254 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1046 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1125 (1455)
Q Consensus 1046 ~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l 1125 (1455)
++. +.
T Consensus 255 ---------------~~~--~~---------------------------------------------------------- 259 (529)
T PRK15134 255 ---------------KLL--NS---------------------------------------------------------- 259 (529)
T ss_pred ---------------HHH--Hh----------------------------------------------------------
Confidence 000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 000511 1126 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205 (1455)
Q Consensus 1126 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~ 1205 (1455)
. .. .++..
T Consensus 260 ---------------------~--~~----------------------------------------------~~~~~--- 267 (529)
T PRK15134 260 ---------------------E--PS----------------------------------------------GDPVP--- 267 (529)
T ss_pred ---------------------C--cc----------------------------------------------ccccc---
Confidence 0 00 00000
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecC---------CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCce
Q 000511 1206 YQSLSPDWPFQGLIEFQNVTMRYKP---------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1455)
Q Consensus 1206 ~~~~~~~wp~~g~I~f~nvs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~ 1276 (1455)
..++ ....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+
T Consensus 268 -~~~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~ 341 (529)
T PRK15134 268 -LPEP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE 341 (529)
T ss_pred -cCCC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE
Confidence 0000 0124899999999952 12469999999999999999999999999999999999995 8999
Q ss_pred EEECCEeCCCCChHH---HhcccEEEeCCC--CCCC-CcHHHhcCcCC-----CCChHHHHHHHHHhcHHHHHHhCCCc-
Q 000511 1277 ILVDGLNIINTPVRD---LRGRFAVVPQSP--FLFE-GSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLE- 1344 (1455)
Q Consensus 1277 I~IdG~di~~i~~~~---lR~~i~~VpQdp--~lf~-gTIreNLdp~~-----~~~d~ei~~aL~~~~l~~~i~~lgLd- 1344 (1455)
|.+||.++...+... +|++++||||+| .+|+ .|+++|+.... ..+..+. +..+.+.++.+|++
T Consensus 342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDP 416 (529)
T ss_pred EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHcCCCH
Confidence 999999998776543 477899999998 3666 49999996421 0111111 11233445555775
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEE
Q 000511 1345 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEI 1421 (1455)
Q Consensus 1345 t~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI 1421 (1455)
........+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||
T Consensus 417 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 34566667899999999999999999999999999999999999999999998764 27899999999999876 8999
Q ss_pred EEEeCCeEEEeCChhHHhccCC
Q 000511 1422 LILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1422 ~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
++|++|++++.|+++++++++.
T Consensus 497 ~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred EEEECCEEEEEcCHHHHhcCCC
Confidence 9999999999999999987654
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-63 Score=626.53 Aligned_cols=510 Identities=16% Similarity=0.155 Sum_probs=384.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 000511 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1455)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1455)
+.++...+....++.++.+.+.... ... ..+..++++.++..++.+...+.....+.+...+++.++++++++.|
T Consensus 26 ~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~ 100 (555)
T TIGR01194 26 LGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAP 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444444555556666666553110 000 11222334455556677777788888999999999999999999999
Q ss_pred ccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1062 (1455)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l 1062 (1455)
+.||++.++|++++|+++|++.+++.+.. +..++..++.+++.++++++.+|.+.++++.++++...+..+..+..++.
T Consensus 101 ~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~ 179 (555)
T TIGR01194 101 IEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKF 179 (555)
T ss_pred HHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987753 55666666777777777777777766654443333333333332222333
Q ss_pred HHHHHHhhchhHhHHHHhhcchHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSED--YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1140 (1455)
Q Consensus 1063 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1140 (1455)
.+......+.+.+.+.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+.+. +..
T Consensus 180 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 256 (555)
T TIGR01194 180 FHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIG---CAL 256 (555)
T ss_pred HHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 33344455678899999999999999999954 5566777766666665543322222211111222111111 111
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cc--cC-CCC--CCCC
Q 000511 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE--LC--GY-QSL--SPDW 1213 (1455)
Q Consensus 1141 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~--~~--~~-~~~--~~~w 1213 (1455)
+++. . .+..+.|.+..++.++..+..++..+...+.+++....+.+|+.++.+.+.++ .. .. ... .+..
T Consensus 257 ~~~~--~--~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 332 (555)
T TIGR01194 257 FAAA--M--FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHD 332 (555)
T ss_pred HHHH--H--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccC
Confidence 1111 0 12456788888888999999999999999999999999999999997632221 10 00 000 0111
Q ss_pred CCCccEEEEEEEEEecCC---CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 000511 1214 PFQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1214 p~~g~I~f~nvs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~ 1290 (1455)
...+.|+|+||+|+|++. .+++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+.+++.+
T Consensus 333 ~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 333 KSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRD 412 (555)
T ss_pred CCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 234689999999999753 24699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
++|+++++|||||++|++|+|+|+.+ ..++++++++++.++++++++.+ |+||. .+||||||||++||||+
T Consensus 413 ~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAW 485 (555)
T ss_pred HHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999743 45788999999999999999988 99984 58999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHH-h-cCCcEEEEeccChhhHhhhCEEEEEeCCeEEEe
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISS-E-CKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~-~-~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1432 (1455)
+++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999887643 3 368999999999999999999999999999975
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=639.80 Aligned_cols=443 Identities=23% Similarity=0.320 Sum_probs=339.1
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC--CCcEEEEcC----------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG---------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~--~~G~i~~~~---------- 668 (1455)
.++++|++++|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFGG---V---KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeCC---e---EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4789999999852 2 359999999999999999999999999999999999986 899998865
Q ss_pred ----cEEEEcCCCCCCCc-CHHHHhccCCC------CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 ----SIAYVPQVPWILSG-TIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 ----~i~y~~Q~p~l~~~-ti~~nI~~g~~------~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.++||+|+|.++.. |++||+.++.. .+.+ +..++++..++.. .......+||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG 147 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLG 147 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHH
Confidence 38999999987764 99999988642 1222 2233333333321 223456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecC
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1455)
|||||+||||+..+|+++||||||++||+...+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI-IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999888875 33312347899999999999865 99999999999987664
Q ss_pred HHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhh
Q 000511 813 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 892 (1455)
Q Consensus 813 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 892 (1455)
.+++.. . . ... .+.
T Consensus 227 ~~~~~~-----------------------------------------------------~-~------~~~---~~~--- 240 (506)
T PRK13549 227 AAGMTE-----------------------------------------------------D-D------IIT---MMV--- 240 (506)
T ss_pred cccCCH-----------------------------------------------------H-H------HHH---Hhh---
Confidence 322100 0 0 000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 893 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 972 (1455)
Q Consensus 893 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 972 (1455)
.
T Consensus 241 ------------------------------~------------------------------------------------- 241 (506)
T PRK13549 241 ------------------------------G------------------------------------------------- 241 (506)
T ss_pred ------------------------------C-------------------------------------------------
Confidence 0
Q ss_pred HHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 973 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1052 (1455)
Q Consensus 973 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~ 1052 (1455)
.+
T Consensus 242 --------~~---------------------------------------------------------------------- 243 (506)
T PRK13549 242 --------RE---------------------------------------------------------------------- 243 (506)
T ss_pred --------cC----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1053 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1132 (1455)
Q Consensus 1053 ~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1132 (1455)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCC
Q 000511 1133 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1212 (1455)
Q Consensus 1133 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~ 1212 (1455)
.. + . .+.+. ++
T Consensus 244 -----------------~~---------------------------------------~---~--~~~~~------~~-- 254 (506)
T PRK13549 244 -----------------LT---------------------------------------A---L--YPREP------HT-- 254 (506)
T ss_pred -----------------cc---------------------------------------c---c--ccccc------cC--
Confidence 00 0 0 00000 00
Q ss_pred CCCCccEEEEEEEEEecC-CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-CCCceEEECCEeCCCCCh-
Q 000511 1213 WPFQGLIEFQNVTMRYKP-SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNIINTPV- 1289 (1455)
Q Consensus 1213 wp~~g~I~f~nvs~~Y~~-~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-~~~G~I~IdG~di~~i~~- 1289 (1455)
+....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+.
T Consensus 255 -~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 255 -IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred -CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 11225899999999952 23469999999999999999999999999999999999999 599999999999875543
Q ss_pred HHHhcccEEEeCCC---CCCC-CcHHHhcCcCC--CC------ChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCCh
Q 000511 1290 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFH--MN------DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSV 1356 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp---~lf~-gTIreNLdp~~--~~------~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSg 1356 (1455)
+..|++++|+||+| .+|+ .|+.+|+.... .. +..+ .+....+.++.+|++. ........|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRLKVKTASPELAIARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhcCccCCCcccccccCCH
Confidence 45677899999997 3565 59999996421 11 1111 1122344555557753 44555678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1357 GQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
|||||++||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998753 48899999999999876 89999999999999999
Q ss_pred hhHHh
Q 000511 1435 PQTLL 1439 (1455)
Q Consensus 1435 p~eLl 1439 (1455)
++++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 98874
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=621.69 Aligned_cols=534 Identities=19% Similarity=0.214 Sum_probs=416.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSG---HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1455)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~---~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 344 (1455)
+++.+++.++...++.++..++..+.|.+++.++|... .... .......+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999998642 2211 0111112333444556677777777788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHH--HHhHHHHHHH
Q 000511 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL-YLLY--TQVKFAFVSG 420 (1455)
Q Consensus 345 ~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~-~lL~--~~lg~a~l~g 420 (1455)
++...+...+|+|.++++....++.++|++++.++.|++++..+.. .+..+....+.+++++ ++++ +.+++.++++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888999999999999999998654 3444444444443332 2333 3333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 421 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500 (1455)
Q Consensus 421 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 500 (1455)
+ .++...+..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 L--LLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred H--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222233556677778888888999999999999999999999999999988888877655555544444444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000511 501 VFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSL-ISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1455)
Q Consensus 501 ~~~~~~~~--~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l-~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1455)
..+..... ..+.++.+|.+.+ ++.++++..++++.+..++ ..|+..++..+..+.++.++.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22222211 2233455666664 6779999988877765443 468888999999999999999999999976532111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000511 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 657 (1455)
... .+. ......++++|++|+|++++ +++|+|+||++++||.++|+||||||||||+++|+|++
T Consensus 327 ~~~---~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 327 PTT---STA---------AADQVSLTLNNVSFTYPDQP----QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred Ccc---cCC---------CCCCCeEEEEEEEEECCCCC----CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 000 000 11235699999999996431 23599999999999999999999999999999999999
Q ss_pred cCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccc
Q 000511 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 723 (1455)
Q Consensus 658 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~i 723 (1455)
+|++|+|.++| .|+||+|+|++|++||+|||.++.+ .++++..++++.++++++++. |+|++|.+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 99999999987 4999999999999999999999874 688899999999999999999 99999999
Q ss_pred cCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEe
Q 000511 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 803 (1455)
Q Consensus 724 g~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 803 (1455)
||+|.+||||||||++||||++++|++++||||||+||+++++.+.+. +.. ..+++|+|+||||++.++.||+|++|+
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~-~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAE-HAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999998887 443 456899999999999999999999999
Q ss_pred CCeEEEecCHHHHHhccccCc
Q 000511 804 KGQVKWIGSSADLAVSLYSGF 824 (1455)
Q Consensus 804 ~G~i~~~g~~~~l~~~~~~~~ 824 (1455)
+|++++.|+++|+++..+.+.
T Consensus 548 ~G~i~~~g~~~~l~~~~g~y~ 568 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQGRYY 568 (574)
T ss_pred CCeEEEeCCHHHHHhcCcHHH
Confidence 999999999999987665443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=619.40 Aligned_cols=520 Identities=19% Similarity=0.224 Sum_probs=415.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 272 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 351 (1455)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~ 351 (1455)
.+++.++..+++.++..++..+.|++++.++|.+....+....+.+++.++++.++.+++.....+...+.+.++...+.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777888889999999999999999999765322223334455566666777888888888889999999999999
Q ss_pred HHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHH
Q 000511 352 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVA--LYLLYTQVKFAFVSGLAITILL 427 (1455)
Q Consensus 352 ~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~--~~lL~~~lg~a~l~g~~v~~~~ 427 (1455)
..+|+|.++++... .+...+....|++++.+.... +..+...++.++.. ++.+.+.+++.++++++ +.
T Consensus 83 ~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~---l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAV---VL 154 (544)
T ss_pred HHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HH
Confidence 99999999998732 245667788999999876543 33344444443332 33333344444333322 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 428 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 507 (1455)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 507 (1455)
..+..+..++.++..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788889999999999999999999999999999999999988877666555554444443333322222
Q ss_pred H--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCC
Q 000511 508 P--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSP 585 (1455)
Q Consensus 508 ~--~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~ 585 (1455)
. ..+.++++|.|.+.++.+|+|.+++++.++..+..|+..+...+..+.++..+.+|+.++++.++..+.. .+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-----~~ 309 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-----CC
Confidence 1 2234566888888888999999999999999999999999999999999999999999999764432110 00
Q ss_pred CcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEE
Q 000511 586 SYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665 (1455)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~ 665 (1455)
. +..+..++++|++|+|+..+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.
T Consensus 310 ~---------~~~~~~i~~~~v~~~y~~~~----~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 310 L---------PEPEGHLSVENVTIVPPGGK----KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred C---------CCCCCeEEEEEEEEEcCCCC----ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 0 11234699999999996431 2359999999999999999999999999999999999999999999
Q ss_pred EcC-------------cEEEEcCCCCCCCcCHHHHhccCC-CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 666 ASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 666 ~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
++| .++||||+|++|++|++|||.++. +.+++++.++++.+++++.++.+|+|++|.+|++|.+||
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 886 599999999999999999998654 478889999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEec
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 811 (1455)
||||||++||||++++|+++|||||||+||+++++.+.+. +.....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 9999999999999999999999999999999999998876 333123578999999999999899999999999999999
Q ss_pred CHHHHHh
Q 000511 812 SSADLAV 818 (1455)
Q Consensus 812 ~~~~l~~ 818 (1455)
+++++.+
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9998854
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=639.14 Aligned_cols=437 Identities=22% Similarity=0.361 Sum_probs=335.8
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc--cCCCcEEEEc------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--MLTHGSIHAS------------ 667 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~--~~~~G~i~~~------------ 667 (1455)
++++|++++|.. . .+|+|+||++++|++++|+||||||||||+++|+|.. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG---K---EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC---e---EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 357889988842 2 3599999999999999999999999999999999996 7999999874
Q ss_pred -----------C-----------------------cEEEEcCC-CCCCC-cCHHHHhccCC---CCCH----HHHHHHHH
Q 000511 668 -----------G-----------------------SIAYVPQV-PWILS-GTIRDNILFGK---NYDP----QSYSETLK 704 (1455)
Q Consensus 668 -----------~-----------------------~i~y~~Q~-p~l~~-~ti~~nI~~g~---~~~~----~~~~~v~~ 704 (1455)
| .++|++|+ +.+++ .|++||+.++. .++. ++..++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 28999997 56665 59999998742 1222 34555666
Q ss_pred HhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceE
Q 000511 705 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTR 783 (1455)
Q Consensus 705 ~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ 783 (1455)
.++++... .....+|||||||||+||||+..+|+++||||||++||+.+.+++.+. +..... .++|+
T Consensus 155 ~~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tv 222 (520)
T TIGR03269 155 MVQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-LEEAVKASGISM 222 (520)
T ss_pred HcCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH-HHHHHHhcCcEE
Confidence 66664332 234568999999999999999999999999999999999999998775 332112 37899
Q ss_pred EEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCC
Q 000511 784 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSV 862 (1455)
Q Consensus 784 ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1455)
|+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------------------------------------------- 259 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------------------------------------------- 259 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-------------------------------------------
Confidence 999999999864 999999999998765543221000
Q ss_pred CcchhhHHHHHHHhcCcchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHH
Q 000511 863 SDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLC 942 (1455)
Q Consensus 863 ~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~ 942 (1455)
|. .
T Consensus 260 -------------------------~~---------------------------------~------------------- 262 (520)
T TIGR03269 260 -------------------------FM---------------------------------E------------------- 262 (520)
T ss_pred -------------------------HH---------------------------------h-------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Q 000511 943 IFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVG 1022 (1455)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~ 1022 (1455)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHH
Q 000511 1023 LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1102 (1455)
Q Consensus 1023 ~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1102 (1455)
...
T Consensus 263 --------------------------------------~~~--------------------------------------- 265 (520)
T TIGR03269 263 --------------------------------------GVS--------------------------------------- 265 (520)
T ss_pred --------------------------------------hch---------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1103 HVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTET 1182 (1455)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~ 1182 (1455)
. .
T Consensus 266 --------------------------------------------~----------------------------------~ 267 (520)
T TIGR03269 266 --------------------------------------------E----------------------------------V 267 (520)
T ss_pred --------------------------------------------h----------------------------------h
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecC---CCCcceeeeeEEEeCCcEEEEECCCCChH
Q 000511 1183 EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGK 1259 (1455)
Q Consensus 1183 e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~---~~~~vL~~isl~I~~GekvgIvGrtGSGK 1259 (1455)
+. .++. +. ....++++|++++|+. +..++|+|+||+|++||++||+|+|||||
T Consensus 268 ~~-------------~~~~-------~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGK 323 (520)
T TIGR03269 268 EK-------------ECEV-------EV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGK 323 (520)
T ss_pred cc-------------cccc-------CC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCH
Confidence 00 0000 00 1125999999999953 23469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEC-CE---eCCCCC---hHHHhcccEEEeCCCCCCCC-cHHHhcCcC-C-CCChHHHHHHH
Q 000511 1260 SSILNALFRLTPICGGQILVD-GL---NIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLDPF-H-MNDDLKIWSVL 1329 (1455)
Q Consensus 1260 STLl~~L~rl~~~~~G~I~Id-G~---di~~i~---~~~lR~~i~~VpQdp~lf~g-TIreNLdp~-~-~~~d~ei~~aL 1329 (1455)
|||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|+. |+++|+... . ....++.
T Consensus 324 STLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~---- 399 (520)
T TIGR03269 324 TTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA---- 399 (520)
T ss_pred HHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH----
Confidence 999999999999999999996 64 344332 23567789999999988875 999999632 1 1111110
Q ss_pred HHhcHHHHHHhCCCch-----hhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CC
Q 000511 1330 EKCHVKEEVEAVGLET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KG 1402 (1455)
Q Consensus 1330 ~~~~l~~~i~~lgLdt-----~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~ 1402 (1455)
+....+.++.+|++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+
T Consensus 400 -~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g 478 (520)
T TIGR03269 400 -RMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478 (520)
T ss_pred -HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 111233445556643 3455566899999999999999999999999999999999999999999998764 27
Q ss_pred cEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1403 MTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1403 ~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 479 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 899999999999876 89999999999999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-62 Score=623.31 Aligned_cols=532 Identities=19% Similarity=0.217 Sum_probs=412.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348 (1455)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~ 348 (1455)
.++.++..++..++..++..++.++.|+++..++|.+..+.. .. .+++.++++.++..+......+...++..+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--IF-PLLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888899999999999999999998765321 11 112222222333333344445566778888888
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHH
Q 000511 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL---YLLYTQVKFAFVSGLAIT 424 (1455)
Q Consensus 349 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~---~lL~~~lg~a~l~g~~v~ 424 (1455)
.+...+|+|.++++...+.+.+.|++.+.++.|++.+..... .+..+....+..++.+ +.+.+.+++.++ +++
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l---~~~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLV---VLG 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 899999999999999888889999999999999999875432 3333333332222222 223333443333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1455)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1455)
++...+..++.++..+.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-++-.+...+..........+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566778888888889999999999999999999999999999998777766554433333322222222221211
Q ss_pred H--HHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000511 505 A--TTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1455)
Q Consensus 505 ~--~~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1455)
. .....+.++++|+|.+..+.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-- 324 (588)
T PRK13657 247 RAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-- 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC--
Confidence 1 112234556778888888999999999999999999999999999999999999999999999876432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000511 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 662 (1455)
... .......|+++|++|+|+.+ . ++|+|+||+++||+.++|+|+||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~I~~~~vsf~y~~~--~---~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 325 -AID--------LGRVKGAVEFDDVSFSYDNS--R---QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred -CCC--------cCCCCCeEEEEEEEEEeCCC--C---ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 000 01123469999999999632 2 359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCC-CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 663 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
+|.++| .|+||||+|++|++||||||.+++ +.++++..++++.+++++.+..+|+|.+|.+|++|.
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 999987 699999999999999999999986 467888999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
+||||||||++||||++++|+|++||||||+||+++++.+++. +.. ..+++|+|+||||++.++.||+|++|++|++.
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~-l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAA-LDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999887 333 44679999999999999999999999999999
Q ss_pred EecCHHHHHhccccCc
Q 000511 809 WIGSSADLAVSLYSGF 824 (1455)
Q Consensus 809 ~~g~~~~l~~~~~~~~ 824 (1455)
++|+++++++..+.+.
T Consensus 549 ~~g~~~~l~~~~~~y~ 564 (588)
T PRK13657 549 ESGSFDELVARGGRFA 564 (588)
T ss_pred EeCCHHHHHHCCChHH
Confidence 9999999986654443
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=634.75 Aligned_cols=446 Identities=21% Similarity=0.324 Sum_probs=336.9
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|.. . .+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 5 YISMAGIGKSFGP---V---HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred eEEEeeeEEEcCC---e---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 4789999998852 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCCc-CHHHHhccCCC-----C-----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 669 --SIAYVPQVPWILSG-TIRDNILFGKN-----Y-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~-ti~~nI~~g~~-----~-----~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
.++|++|++.++.. |++||+.++.. + +. ++..++++.+++.. .......+||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 147 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLS 147 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCC
Confidence 38999999987765 99999987531 0 11 12333444444432 1234556899
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999988876 33212347899999999999875 999999999999877
Q ss_pred cCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhh
Q 000511 811 GSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 890 (1455)
Q Consensus 811 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 890 (1455)
|+++++... +.. ....+
T Consensus 227 g~~~~~~~~------------------------------------------------~~~---~~~~~------------ 243 (510)
T PRK09700 227 GMVSDVSND------------------------------------------------DIV---RLMVG------------ 243 (510)
T ss_pred cchhhCCHH------------------------------------------------HHH---HHhcC------------
Confidence 654432100 000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 891 FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970 (1455)
Q Consensus 891 ~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 970 (1455)
.
T Consensus 244 ------------------------------------~------------------------------------------- 244 (510)
T PRK09700 244 ------------------------------------R------------------------------------------- 244 (510)
T ss_pred ------------------------------------C-------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000511 971 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1050 (1455)
Q Consensus 971 h~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~ 1050 (1455)
+
T Consensus 245 -----------~-------------------------------------------------------------------- 245 (510)
T PRK09700 245 -----------E-------------------------------------------------------------------- 245 (510)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1051 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1130 (1455)
Q Consensus 1051 i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 1130 (1455)
.. .
T Consensus 246 -----------~~-----~------------------------------------------------------------- 248 (510)
T PRK09700 246 -----------LQ-----N------------------------------------------------------------- 248 (510)
T ss_pred -----------cc-----c-------------------------------------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCC
Q 000511 1131 FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1210 (1455)
Q Consensus 1131 ~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~ 1210 (1455)
.. .. ..+. ..++
T Consensus 249 ----------------~~-~~----------------------------------------------~~~~-----~~~~ 260 (510)
T PRK09700 249 ----------------RF-NA----------------------------------------------MKEN-----VSNL 260 (510)
T ss_pred ----------------cc-cc----------------------------------------------cccc-----cccC
Confidence 00 00 0000 0000
Q ss_pred CCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-
Q 000511 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1289 (1455)
Q Consensus 1211 ~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~- 1289 (1455)
+.+..++++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 261 ---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 261 ---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333 (510)
T ss_pred ---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHH
Confidence 0112599999998763 38999999999999999999999999999999999999999999999999876543
Q ss_pred HHHhcccEEEeCCC---CCCCC-cHHHhcCcCCCCChH------HH-HHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChh
Q 000511 1290 RDLRGRFAVVPQSP---FLFEG-SLRDNLDPFHMNDDL------KI-WSVLEKCHVKEEVEAVGLE-TFVKESGISFSVG 1357 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp---~lf~g-TIreNLdp~~~~~d~------ei-~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgG 1357 (1455)
+.+|++++||||++ .+|++ |+++|+......... .. ...-.+....+.++.+|+. .........||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 413 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG 413 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence 45678999999984 57765 999998753210000 00 0000111234455555775 3455566689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1358 QrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
||||++|||||+++|+|||||||||+||..+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999999999999999999999998753 48899999999998865 899999999999998876
Q ss_pred hH
Q 000511 1436 QT 1437 (1455)
Q Consensus 1436 ~e 1437 (1455)
.+
T Consensus 494 ~~ 495 (510)
T PRK09700 494 RD 495 (510)
T ss_pred cc
Confidence 33
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=676.95 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=195.4
Q ss_pred HHHHHHHHHHHHHHHhh--cCCccccccC--CCCCCCCCCCc--cEEEEEEEEEec--CCCCcceeeeeEEEeCCcEEEE
Q 000511 1180 TETEKEMVSLERVLEYM--DVPQEELCGY--QSLSPDWPFQG--LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGI 1251 (1455)
Q Consensus 1180 ~~~e~~~~s~~Ri~~~~--~~~~e~~~~~--~~~~~~wp~~g--~I~f~nvs~~Y~--~~~~~vL~~isl~I~~GekvgI 1251 (1455)
.+.|..+.++||..++. +.+.|..... ..++. .+| .++++||+++|+ ++.+++|+|||++|+|||++||
T Consensus 718 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI 794 (1394)
T TIGR00956 718 ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEK---ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794 (1394)
T ss_pred cccccccccccccccCCCCccccccccccccccccc---cCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEE
Confidence 45566677889988763 2333321111 11111 134 479999999995 3345799999999999999999
Q ss_pred ECCCCChHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHHhcccEEEeCCCCC-CCCcHHHhcCcCC------CCC
Q 000511 1252 VGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFH------MND 1321 (1455)
Q Consensus 1252 vGrtGSGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~l-f~gTIreNLdp~~------~~~ 1321 (1455)
+||||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++.+ +..||||||++.. ..+
T Consensus 795 ~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~ 870 (1394)
T TIGR00956 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVS 870 (1394)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999998 78899999999985 2578999999998765 4569999997421 223
Q ss_pred hHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC-EEEEeccCcCCCHHHHHHHHHHH
Q 000511 1322 DLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK-VLCLDECTANVDAQTASILQNAI 1396 (1455)
Q Consensus 1322 d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~-ILlLDEaTS~lD~~te~~I~~~i 1396 (1455)
+++ +.++++..++.+ -.|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|++.|
T Consensus 871 ~~~~~~~v~~~l~~l~L~~-----~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L 945 (1394)
T TIGR00956 871 KSEKMEYVEEVIKLLEMES-----YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLM 945 (1394)
T ss_pred HHHHHHHHHHHHHHcCChh-----hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 333 344555555433 25788888888999999999999999999997 99999999999999999999999
Q ss_pred HHh-cCCcEEEEeccChhhH--hhhCEEEEEeCC-eEEEeCChhH
Q 000511 1397 SSE-CKGMTVITIAHRISTV--LNMDEILILDHG-HLVEQGNPQT 1437 (1455)
Q Consensus 1397 ~~~-~~~~TvI~IaHrl~ti--~~~DrI~vl~~G-~ive~G~p~e 1437 (1455)
++. .+++|||+++|+++.. ..||+|++|++| +++++|++.+
T Consensus 946 ~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 946 RKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 887 4689999999999974 569999999997 9999999754
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=620.17 Aligned_cols=522 Identities=20% Similarity=0.238 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000511 284 KVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVR 362 (1455)
Q Consensus 284 ~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~ 362 (1455)
.++..++..+.|++++.++|.+.... .....+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556777889999999999875422 22223334444555566667777666777788899999999999999999999
Q ss_pred ccccCCCChhHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 363 LAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKF-AFVSGLAITILLIPVNKWIANLIAN 440 (1455)
Q Consensus 363 ~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~-a~l~g~~v~~~~~~~~~~~~~~~~~ 440 (1455)
...+.+.+.|++.+.+++|++.+.... ..+..++..++.+++++++++..++| .+++.++++++...+..++.+++.+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999998654 34555565555544443333223333 2223333333344455667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000511 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP--TLFSLFTFGL 518 (1455)
Q Consensus 441 ~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~ 518 (1455)
..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+..... ..+.++.+|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999998887776554443433333333332222221111 2233456778
Q ss_pred HHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCC
Q 000511 519 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSK 598 (1455)
Q Consensus 519 ~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1455)
|.+.++.+|+|.+++++.+...+..|+..+++.+..+.+++++.+||.++++.++..+... .+ .+..
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~----~~---------~~~~ 310 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS----EP---------VPEG 310 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CC---------CCCC
Confidence 8888899999999999999999999999999999999999999999999997653211000 00 0112
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
+..++++|++|+|+..+ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~I~~~~v~~~y~~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 311 RGELDVNIRQFTYPQTD----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred CCcEEEEEEEEECCCCC----CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH
Confidence 34689999999997431 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCCcCHHHHhccCC-CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHH
Q 000511 669 ---SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARal 744 (1455)
.++||+|+|++|++|++|||.++. +.+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 387 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 489999999999999999999985 4788899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhccccCc
Q 000511 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824 (1455)
Q Consensus 745 y~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~ 824 (1455)
+++|+++|||||||+||+++++.+.+. +.. ..+++|+|++||+++.++.||+|++|++|+++++|+++++.+..+.+.
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~-l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~ 544 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHN-LRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYR 544 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHH
Confidence 999999999999999999999999887 433 456899999999999999999999999999999999999987654443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=673.17 Aligned_cols=547 Identities=19% Similarity=0.200 Sum_probs=393.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 883 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFG 962 (1455)
Q Consensus 883 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1455)
+..+..++..++..+... +..++...+....++.++..++.....+.......|+.++++..++..++.....+.....
T Consensus 290 ~l~~~l~~~~~~~~~~~~-~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (1495)
T PLN03232 290 WLLRALNNSLGGRFWLGG-IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRV 368 (1495)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554444333 3345555566666666666554322111111111122222222222222221122223566
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000511 963 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1042 (1455)
Q Consensus 963 ~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 1042 (1455)
+.+....+...+++++++.|..++++.++|+++||+++|++.+++.. ..+..+....+.++..++++.....+..++.+
T Consensus 369 ~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~ 447 (1495)
T PLN03232 369 GFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGS 447 (1495)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77777788889999999999999999999999999999999998875 33433333333333333332221111112122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1043 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1122 (1455)
Q Consensus 1043 p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1122 (1455)
++++++..+..++.+..+..++.....+....+.+.|.++|+++||+|+||+.+.+++.+..+...+..........+..
T Consensus 448 ~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~ 527 (1495)
T PLN03232 448 LILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNS 527 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233333444444444455556677899999999999999999999999998877666555444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 000511 1123 LRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202 (1455)
Q Consensus 1123 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~ 1202 (1455)
........ ++.++.+...... .+..++|.+..++++...+..++..+...+..+..+..|.+|+.++++.+++.
T Consensus 528 ~~~~~~~~-~~~~~~fg~~~v~-----~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~ 601 (1495)
T PLN03232 528 FILNSIPV-VVTLVSFGVFVLL-----GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERI 601 (1495)
T ss_pred HHHHHHHH-HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 21111111 1111111111111 23467888989999999999999999999999999999999999999766542
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECC
Q 000511 1203 LCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1455)
Q Consensus 1203 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG 1281 (1455)
.... + +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 602 ~~~~--~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--- 675 (1495)
T PLN03232 602 LAQN--P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--- 675 (1495)
T ss_pred cccc--C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---
Confidence 1111 1 111234679999999999753 46799999999999999999999999999999999999999999763
Q ss_pred EeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHH
Q 000511 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1359 (1455)
Q Consensus 1282 ~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQr 1359 (1455)
.+|++++||||+|++|+|||||||.++.++++++++++++.|++.+.++.+ |+||.+||+|.+||||||
T Consensus 676 ---------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQk 746 (1495)
T PLN03232 676 ---------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQK 746 (1495)
T ss_pred ---------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHH
Confidence 368899999999999999999999999888999999999999999999998 999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHH-HHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHH
Q 000511 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQ-NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1360 Qrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~-~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eL 1438 (1455)
|||+||||++++|+|+|||||||+||++|++.|. +.++...+++|+|+||||++++..||+|++|++|+|+|.|+|+||
T Consensus 747 QRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL 826 (1495)
T PLN03232 747 QRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL 826 (1495)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999774 557766789999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHhh
Q 000511 1439 LQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1439 l~~~~s~f~~l~~~~ 1453 (1455)
+++ ++.|+++++..
T Consensus 827 ~~~-~~~~~~l~~~~ 840 (1495)
T PLN03232 827 SKS-GSLFKKLMENA 840 (1495)
T ss_pred Hhc-chhHHHHHHhc
Confidence 985 46899988754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=631.79 Aligned_cols=436 Identities=21% Similarity=0.309 Sum_probs=335.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFPG---V---KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeCC---e---EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 4789999998852 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCCc-CHHHHhccCCC-------CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 --SIAYVPQVPWILSG-TIRDNILFGKN-------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~-ti~~nI~~g~~-------~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.++|++|+|.++.. |++||+.++.. ++.+ +..++++.+++.. .......+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 146 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELSIGE 146 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHH
Confidence 38999999987754 99999998642 1222 2333444444322 1234456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCH
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 813 (1455)
||||+||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+.
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999988765 32212347899999999998864 999999999999876543
Q ss_pred HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhh
Q 000511 814 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 893 (1455)
Q Consensus 814 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 893 (1455)
+++.. ++.
T Consensus 226 ~~~~~-----------------------------------------------------~~~------------------- 233 (501)
T PRK10762 226 ADLTE-----------------------------------------------------DSL------------------- 233 (501)
T ss_pred CcCCH-----------------------------------------------------HHH-------------------
Confidence 22100 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973 (1455)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 973 (1455)
...+...
T Consensus 234 ------------------------~~~~~~~------------------------------------------------- 240 (501)
T PRK10762 234 ------------------------IEMMVGR------------------------------------------------- 240 (501)
T ss_pred ------------------------HHHhcCC-------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1053 (1455)
Q Consensus 974 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~ 1053 (1455)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1133 (1455)
Q Consensus 1054 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1133 (1455)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCC
Q 000511 1134 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213 (1455)
Q Consensus 1134 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~w 1213 (1455)
.. . ..++.. ..+
T Consensus 241 -------------~~-~----------------------------------------------~~~~~~-----~~~--- 252 (501)
T PRK10762 241 -------------KL-E----------------------------------------------DQYPRL-----DKA--- 252 (501)
T ss_pred -------------Cc-c----------------------------------------------cccccc-----ccC---
Confidence 00 0 000000 000
Q ss_pred CCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHH
Q 000511 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDL 1292 (1455)
Q Consensus 1214 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~-~~l 1292 (1455)
|.+-.|+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+
T Consensus 253 ~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 253 PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 0112588999974 37999999999999999999999999999999999999999999999999987664 356
Q ss_pred hcccEEEeCCC---CCCC-CcHHHhcCcCCC---------CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhH
Q 000511 1293 RGRFAVVPQSP---FLFE-GSLRDNLDPFHM---------NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQ 1358 (1455)
Q Consensus 1293 R~~i~~VpQdp---~lf~-gTIreNLdp~~~---------~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQ 1358 (1455)
|++++||||+| .+|. -|+++|+..... .+..+ .+....+.++.+|++ ...+.....|||||
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 78899999997 3554 599999964210 01111 111234455555774 34566667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChh
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1436 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~ 1436 (1455)
|||++||||++.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999998864 47899999999999876 8999999999999999988
Q ss_pred HHh
Q 000511 1437 TLL 1439 (1455)
Q Consensus 1437 eLl 1439 (1455)
++.
T Consensus 481 ~~~ 483 (501)
T PRK10762 481 QAT 483 (501)
T ss_pred cCC
Confidence 764
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-63 Score=564.88 Aligned_cols=530 Identities=20% Similarity=0.271 Sum_probs=447.8
Q ss_pred cchHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 263 PSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 342 (1455)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 342 (1455)
.....+.+..++..|+..+++..+.+++.++.|+++-++.|.+-.+.+......+.+....+|+++.+++..+.+...|+
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999999999998877777778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000511 343 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-----NSFHDAWSLPFQIGVALYLLYTQVKFAF 417 (1455)
Q Consensus 343 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-----~~~~~~~~~pl~i~i~~~lL~~~lg~a~ 417 (1455)
+.++...|...||.-+++.+..........+.+ .|.+.+..+. ..+.+..+.|+.+++ +|+++..+|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999976655433222122222 3666666544 357788889998877 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 418 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 497 (1455)
Q Consensus 418 l~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~ 497 (1455)
++|.++++.+..+|-++++ +..++..+..-+|....+..++|..+|+.+|+.+...+++.+.....++...+.....
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999888888877766665 5567778888899999999999999999999999999999888776666655444333
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 000511 498 AWCVFFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 575 (1455)
Q Consensus 498 ~~~~~~~~~~~~~--~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 575 (1455)
.....+.-..-.+ +.++..|+|++.++++|+|.++++-.+......|+......+.++..|+.|++|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3332222222222 34567788999999999999999999999999999999999999999999999999999653222
Q ss_pred hhhhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhc
Q 000511 576 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1455)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g 655 (1455)
.+.. ..+.++..+.++++++.-|.. + +++++|+||++++|+-++||||||||||||.++|.|
T Consensus 323 ~~~m--------------~LP~P~g~L~Ve~l~~~PPg~-~---~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 323 AERM--------------PLPAPQGALSVERLTAAPPGQ-K---KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCC--------------CCCCCCceeeEeeeeecCCCC-C---CcceecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 1110 112456778899999965432 2 456999999999999999999999999999999999
Q ss_pred CccCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhc-cCCCCCHHHHHHHHHHhcchHHHhhccCCCcc
Q 000511 656 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721 (1455)
Q Consensus 656 ~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~-~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t 721 (1455)
..+|.+|+|++|| +|||.||+..||.|||+|||. |+.+.|+++.-++.++.+.++-|..+|+|++|
T Consensus 385 ~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred ccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 9999999999987 699999999999999999995 88899999999999999999999999999999
Q ss_pred cccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEE
Q 000511 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801 (1455)
Q Consensus 722 ~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~ 801 (1455)
.||+.|.+|||||||||+||||+|.+|.+++||||.|+||.+-+..+.+. +.....+|.|+|+||||++.+..+|+|++
T Consensus 465 ~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A-i~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA-ILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH-HHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999988877765 55546788999999999999999999999
Q ss_pred EeCCeEEEecCHHHHHhc
Q 000511 802 MDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 802 l~~G~i~~~g~~~~l~~~ 819 (1455)
|++|++...|+.+|+.++
T Consensus 544 l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 544 LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCChHHhcCCHHHHHHH
Confidence 999999999999998764
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-62 Score=668.12 Aligned_cols=470 Identities=20% Similarity=0.227 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000511 960 AFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLL 1039 (1455)
Q Consensus 960 ~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l 1039 (1455)
...+.+....+...+++++++.|..++++.++|+++|++++|++.+++... .+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788899999999999999999999999999999999998764 3444444444444333333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1040 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1119 (1455)
Q Consensus 1040 ~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1119 (1455)
+.++++++...++.++.+..+..++.....+....+.+.|.++|+++||+|+||+.|.+++.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333333444444444444555666777899999999999999999999999998876665443333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000511 1120 WLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1199 (1455)
Q Consensus 1120 wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~ 1199 (1455)
+.......... ++.++.+...... .+..++|.+..++++...+..++..+...+..+..+..|.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~-~v~~~~fg~~~~~-----~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPV-LVTVVSFGVFTLL-----GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22221111111 1111111111111 23467888888888888888999999999999999999999999999765
Q ss_pred ccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCC-ceE
Q 000511 1200 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-GQI 1277 (1455)
Q Consensus 1200 ~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~-G~I 1277 (1455)
++.... . ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++ |+|
T Consensus 599 e~~~~~-~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I 675 (1622)
T PLN03130 599 ERVLLP-N-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV 675 (1622)
T ss_pred cccccc-C-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence 432111 1 11 11224579999999999753 3579999999999999999999999999999999999999999 999
Q ss_pred EECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCC
Q 000511 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1355 (1455)
Q Consensus 1278 ~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LS 1355 (1455)
.+ |++++||||+|++|+|||||||.++.++++++++++++.|+|.+.++.+ |++|.+||+|.+||
T Consensus 676 ~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LS 742 (1622)
T PLN03130 676 VI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNIS 742 (1622)
T ss_pred EE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCC
Confidence 74 7799999999999999999999999889999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCC
Q 000511 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1356 gGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I-~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 1434 (1455)
|||||||+||||++++|+|+|||||||+||+++++.| ++.++...+++|+|+||||++.+..||+|++|++|+|+|.|+
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999876 567777778999999999999999999999999999999999
Q ss_pred hhHHhccCCcHHHHHHHhh
Q 000511 1435 PQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1435 p~eLl~~~~s~f~~l~~~~ 1453 (1455)
|+||+++ ++.|+++++..
T Consensus 823 ~~eL~~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 823 YEELSNN-GPLFQKLMENA 840 (1622)
T ss_pred HHHHHhc-chhHHHHHHhc
Confidence 9999975 46899988754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=615.50 Aligned_cols=527 Identities=23% Similarity=0.288 Sum_probs=417.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 352 (1455)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 352 (1455)
++ .++...++.++..++....|.++..+++.+.. .......+...+++++++..++.....+...+.+.++...+..
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77778888889999999999999999988762 1222233334444445556666666667777777999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHH
Q 000511 353 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWS-LPFQIGVALYLL---YTQVKFAFVSGLAITILLI 428 (1455)
Q Consensus 353 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~-~pl~i~i~~~lL---~~~lg~a~l~g~~v~~~~~ 428 (1455)
.+|+|.++++...+++...|++++.++.|++.+............ .++.++..+.++ .+.+++..+.+ .+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~~~~~ 166 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLI---LPLLA 166 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHH
Confidence 999999999999888888999999999999999987766422222 333333222222 22333333332 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 000511 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW--AT 506 (1455)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~--~~ 506 (1455)
....++.++..+..++..+..++..+.+.|.++|++.||.++.|+...++..+..++..+...+............ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666888888888999999999999999999999999998766666554444443333222222222111 12
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCC
Q 000511 507 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 586 (1455)
Q Consensus 507 ~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 586 (1455)
.-....++.++.+.+..+.+++|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++.++....... +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~----~- 321 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD----P- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC----C-
Confidence 22233455667777778889999999999999999999999999999999999999999999987442111000 0
Q ss_pred cccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEE
Q 000511 587 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1455)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 666 (1455)
.......|+++|++|+|+++ +++|+|+||++++||.++||||+||||||++++|+|+++|++|+|.+
T Consensus 322 --------~~~~~~~I~f~~vsf~y~~~-----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 322 --------LKDTIGSIEFENVSFSYPGK-----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred --------CCCCCCeEEEEEEEEEcCCC-----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 01234569999999999742 23599999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 667 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 667 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
+| +||||||+|+||++||+|||.+|++ .++++..++++.+++++.++.+|+|++|.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 86 5999999999999999999999987 688899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecC
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1455)
|||||++||||++++|+|++||||||+||+++++.|.+. +.. +.++||+|+|+||++.+..||+|++|++|+|++.|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~-l~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDA-LKK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHH-HHH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999887 433 457789999999999999999999999999999999
Q ss_pred HHHHHhccccCcc
Q 000511 813 SADLAVSLYSGFW 825 (1455)
Q Consensus 813 ~~~l~~~~~~~~~ 825 (1455)
|+||+++.+.+.+
T Consensus 547 h~eLl~~~g~y~~ 559 (567)
T COG1132 547 HEELLAKGGLYAR 559 (567)
T ss_pred HHHHHHcCCHHHH
Confidence 9999987655544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=627.89 Aligned_cols=451 Identities=22% Similarity=0.355 Sum_probs=343.8
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.. +.+|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35899999999853 2359999999999999999999999999999999999999999999875
Q ss_pred ---cEEEEcCCCCCCCc-CHHHHhccCCCCC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 669 ---SIAYVPQVPWILSG-TIRDNILFGKNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
.++|++|++.++.. |++||+.++.... +++..++++..++... ......+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHH
Confidence 38999999987765 9999999875322 2344555666655422 2344568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHhcc
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSL 820 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~~ 820 (1455)
||++.+|+++||||||++||+...+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH
Confidence 999999999999999999999999988876 33312347899999999998864 9999999999999887765531100
Q ss_pred ccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhhHHHHHHH
Q 000511 821 YSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVI 900 (1455)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~ 900 (1455)
. ... +.
T Consensus 232 ------------------------------------------------~---~~~------------~~----------- 237 (510)
T PRK15439 232 ------------------------------------------------I---IQA------------IT----------- 237 (510)
T ss_pred ------------------------------------------------H---HHH------------Hh-----------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000511 901 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980 (1455)
Q Consensus 901 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 980 (1455)
.. . ..
T Consensus 238 ----------------------~~---~-~~------------------------------------------------- 242 (510)
T PRK15439 238 ----------------------PA---A-RE------------------------------------------------- 242 (510)
T ss_pred ----------------------Cc---c-cc-------------------------------------------------
Confidence 00 0 00
Q ss_pred CcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1060 (1455)
Q Consensus 981 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr 1060 (1455)
.
T Consensus 243 -------------------------------------------------------------------------------~ 243 (510)
T PRK15439 243 -------------------------------------------------------------------------------K 243 (510)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred HHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1061 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1140 (1455)
Q Consensus 1061 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1140 (1455)
+.+.. .+.
T Consensus 244 ~~~~~------------------------------------------~~~------------------------------ 251 (510)
T PRK15439 244 SLSAS------------------------------------------QKL------------------------------ 251 (510)
T ss_pred ccccc------------------------------------------ccc------------------------------
Confidence 00000 000
Q ss_pred HHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEE
Q 000511 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1220 (1455)
Q Consensus 1141 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1220 (1455)
. . ..+..+. ..+ +.+-.|+
T Consensus 252 ------~--~----------------------------------------------~~~~~~~----~~~---~~~~~l~ 270 (510)
T PRK15439 252 ------W--L----------------------------------------------ELPGNRR----QQA---AGAPVLT 270 (510)
T ss_pred ------c--c----------------------------------------------ccccccc----ccC---CCCceEE
Confidence 0 0 0000000 000 0112589
Q ss_pred EEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-HhcccEEE
Q 000511 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVV 1299 (1455)
Q Consensus 1221 f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~-lR~~i~~V 1299 (1455)
++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++++|+
T Consensus 271 ~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 343 (510)
T PRK15439 271 VEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 (510)
T ss_pred EeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence 999983 2699999999999999999999999999999999999999999999999998776654 46789999
Q ss_pred eCCC---CCCCC-cHHHhcCcC--C---CC-ChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1300 PQSP---FLFEG-SLRDNLDPF--H---MN-DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1300 pQdp---~lf~g-TIreNLdp~--~---~~-~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
||++ .+|+. |+++|+... . .. ...+ ++..+.+.++.+|++ .........||||||||++||||+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 9996 36654 999998432 1 00 1111 112234555666775 456666678999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|+++..|+++++..+
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVD 493 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCHH
Confidence 99999999999999999999999999998763 48999999999999976 899999999999999999887644
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-64 Score=627.17 Aligned_cols=447 Identities=22% Similarity=0.298 Sum_probs=333.2
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC--CCcEEEEcC-----------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG----------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~--~~G~i~~~~----------- 668 (1455)
++++|++++|.. . ++|+|+||++++|++++|+||||||||||+++|+|..+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~---~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG---V---KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC---e---EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 578899998852 2 359999999999999999999999999999999999986 799999865
Q ss_pred ---cEEEEcCCCCCCCc-CHHHHhccCCCC-------CHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 ---SIAYVPQVPWILSG-TIRDNILFGKNY-------DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~-------~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.++|++|+|.++.. |++||+.++..+ +.+ +..++++.+++.... + .....+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~----~~~~~~LSgG 145 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------V----TRPVGDYGGG 145 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------c----cCchhhCCHH
Confidence 38999999987765 999999876421 211 233344444332110 1 1235589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecC
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1455)
|||||+||||++.+|+++||||||++||+...+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI-IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecC
Confidence 99999999999999999999999999999999988876 33212357899999999999875 99999999999875442
Q ss_pred HHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhh
Q 000511 813 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 892 (1455)
Q Consensus 813 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 892 (1455)
.+++. . . . ....+
T Consensus 225 ~~~~~------------------------------------------------~-----~--------~--~~~~~---- 237 (500)
T TIGR02633 225 MSTMS------------------------------------------------E-----D--------D--IITMM---- 237 (500)
T ss_pred cccCC------------------------------------------------H-----H--------H--HHHHH----
Confidence 11000 0 0 0 00000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 893 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 972 (1455)
Q Consensus 893 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 972 (1455)
..
T Consensus 238 -----------------------------~~------------------------------------------------- 239 (500)
T TIGR02633 238 -----------------------------VG------------------------------------------------- 239 (500)
T ss_pred -----------------------------hC-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 973 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1052 (1455)
Q Consensus 973 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~ 1052 (1455)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T TIGR02633 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1053 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1132 (1455)
Q Consensus 1053 ~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1132 (1455)
+
T Consensus 240 -----------------~-------------------------------------------------------------- 240 (500)
T TIGR02633 240 -----------------R-------------------------------------------------------------- 240 (500)
T ss_pred -----------------c--------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCC
Q 000511 1133 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1212 (1455)
Q Consensus 1133 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~ 1212 (1455)
. .. . ..+.+. .+
T Consensus 241 --------------~--~~---~-----------------------------------------~~~~~~-----~~--- 252 (500)
T TIGR02633 241 --------------E--IT---S-----------------------------------------LYPHEP-----HE--- 252 (500)
T ss_pred --------------c--cc---c-----------------------------------------cccccc-----cC---
Confidence 0 00 0 000000 00
Q ss_pred CCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-CCceEEECCEeCCCCC-h
Q 000511 1213 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIINTP-V 1289 (1455)
Q Consensus 1213 wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-~~G~I~IdG~di~~i~-~ 1289 (1455)
+.+-.|+++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+ .
T Consensus 253 -~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 253 -IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred -CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 011258999999999432 24699999999999999999999999999999999999995 8999999999987544 3
Q ss_pred HHHhcccEEEeCCC---CCCC-CcHHHhcCcCCC--CCh-HHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFHM--NDD-LKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp---~lf~-gTIreNLdp~~~--~~d-~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQr 1361 (1455)
..+|++++++||++ .+|+ .|+++|+..... ... ..+...-.+....+.++.+|+.. ........||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 56788999999996 3666 499999975311 000 00000111122334455556642 3444556799999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHH
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eL 1438 (1455)
++||||++++|++|||||||++||..+.+.+++.|++.. ++.|||+|||+++.+.. ||||++|++|+++..++.+++
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999999999999999988753 47899999999999876 899999999999988766554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=652.02 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=187.2
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcc
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1295 (1455)
...|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.++|.++.+ +.+..|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533579999999999999999999999999999999999999999999999999965 45677899
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
|||+||++.+++. |+||||..+. ..+++++.+. ..+.++.+||+...+.....||||||||+++||||+.+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999998875 9999996532 1222222211 12334445665555556668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|+||+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999999998853 58999999999999976 999999999999999999999754
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=608.02 Aligned_cols=507 Identities=21% Similarity=0.211 Sum_probs=400.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 274 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 352 (1455)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~ 352 (1455)
++.++..+++.++..++..+.|++++.++|.+. +.......+.+++.++++.++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788889999999999999999999874 3222223334455555666777788888888889999999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Q 000511 353 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAITILLI 428 (1455)
Q Consensus 353 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~l---L~~~lg~a~l~g~~v~~~~~ 428 (1455)
.+|+|.++++...+.+.++|++++.++.|++++.+... .+..+....+.+++++.+ +.+.+++..++++ ++..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~---~l~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTA---PLIP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHH
Confidence 99999999999988889999999999999999987554 345555444444333322 2233333333222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 508 (1455)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 508 (1455)
.+..++.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++.-++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355677777888888899999999999999999999999999998888876654444433333333333222222222
Q ss_pred HHH--HHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCC
Q 000511 509 TLF--SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 586 (1455)
Q Consensus 509 ~~~--~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 586 (1455)
.+. .++.++.+.+..+.++++.+++++.+...+..|+..+...+..+.++..+++|+.++++.++...... ..+
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~- 314 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCC-
Confidence 121 12234445555778999999999999999999999999999999999999999999997442111000 000
Q ss_pred cccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEE
Q 000511 587 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1455)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~ 666 (1455)
......++++|++|+|+..+ +++|+|+||++++|+.++|+||+|||||||+++|+|+++|++|+|.+
T Consensus 315 ---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 315 ---------AAPAPSLEFSGLSVAYPGRR----APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ---------CCCCCeEEEEEEEEECCCCC----cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 01124699999999997431 24599999999999999999999999999999999999999999999
Q ss_pred cC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 667 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 667 ~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
+| .++||+|+|++|++||||||.++.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 86 4999999999999999999999864 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEE
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 802 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l 802 (1455)
|||||++||||++++|++++||||||+||+++++.+.+. +.. ..+++|+|+||||++.++.||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999999887 444 45789999999999999999999975
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=618.78 Aligned_cols=202 Identities=19% Similarity=0.300 Sum_probs=171.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3699999999999999999999999999999999999999999999987 3579
Q ss_pred EEEeCCCC--CCC-CcHHHhcCcCCC--CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1297 AVVPQSPF--LFE-GSLRDNLDPFHM--NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1297 ~~VpQdp~--lf~-gTIreNLdp~~~--~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+|+||++. +++ .|+++|+..... ..++++.+.++.. |+. .........||||||||++||||+++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL---------LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc---------CCChhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 99999984 443 599999864321 1233344444444 453 33455567899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEE-EeCChhHHhccC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLLQDE 1442 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~p~eLl~~~ 1442 (1455)
+|+||||||||++||+.+.+.+.+.|++. +.|||+|||+++.+.. ||||++|++|+++ +.|+++++++.+
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999876 4699999999999876 8999999999998 789999987653
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=622.53 Aligned_cols=443 Identities=21% Similarity=0.281 Sum_probs=333.7
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFPG---V---KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEECC---E---EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 4789999999853 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCCc-CHHHHhccCCC------CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 --SIAYVPQVPWILSG-TIRDNILFGKN------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~-ti~~nI~~g~~------~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.++|++|+|.++.. |++||+.++.. .+. ++..++++.+++... ......+||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~ 146 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQR 146 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHH
Confidence 48999999988765 99999988631 122 233444555544311 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 814 (1455)
|||+||||+..+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..++..
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRV-IRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDM 225 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcc
Confidence 999999999999999999999999999999988876 33212347899999999998865 9999999999987533100
Q ss_pred HHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhhH
Q 000511 815 DLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 894 (1455)
Q Consensus 815 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 894 (1455)
+ . . . .+. +.
T Consensus 226 ~-------------~-----------------------------~-----~------~~~-------------~~----- 234 (501)
T PRK11288 226 A-------------Q-----------------------------V-----D------RDQ-------------LV----- 234 (501)
T ss_pred c-------------c-----------------------------C-----C------HHH-------------HH-----
Confidence 0 0 0 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 895 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 974 (1455)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~l 974 (1455)
..+...
T Consensus 235 ------------------------~~~~~~-------------------------------------------------- 240 (501)
T PRK11288 235 ------------------------QAMVGR-------------------------------------------------- 240 (501)
T ss_pred ------------------------HHhcCC--------------------------------------------------
Confidence 000000
Q ss_pred HHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 975 LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFF 1054 (1455)
Q Consensus 975 l~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~ 1054 (1455)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1055 YRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS 1134 (1455)
Q Consensus 1055 y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 1134 (1455)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCC
Q 000511 1135 FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWP 1214 (1455)
Q Consensus 1135 ~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp 1214 (1455)
. .. +. ...++. + +
T Consensus 241 ------------~--~~---------------------------------------~~---~~~~~~-------~----~ 253 (501)
T PRK11288 241 ------------E--IG---------------------------------------DI---YGYRPR-------P----L 253 (501)
T ss_pred ------------C--cc---------------------------------------cc---cccccc-------C----C
Confidence 0 00 00 000000 0 0
Q ss_pred CCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHHh
Q 000511 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLR 1293 (1455)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-~~~lR 1293 (1455)
.+..++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|
T Consensus 254 ~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 254 GEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred CCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHh
Confidence 1125889999742 4899999999999999999999999999999999999999999999999987543 34567
Q ss_pred cccEEEeCCCC---CCC-CcHHHhcCcCCCC--ChHHH--HHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHH
Q 000511 1294 GRFAVVPQSPF---LFE-GSLRDNLDPFHMN--DDLKI--WSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1294 ~~i~~VpQdp~---lf~-gTIreNLdp~~~~--~d~ei--~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~L 1364 (1455)
++++|+||+|. +|+ .|+.+|+...... ..... ...-++....+.++.+|++ ........+||||||||++|
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHH
Confidence 89999999973 554 6999998653110 00000 0000111223445555763 34455566899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
|||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||||++|++|++++.|++++..
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 999999999999999999999999999999997764 47899999999999865 8999999999999999988765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-61 Score=566.77 Aligned_cols=523 Identities=22% Similarity=0.273 Sum_probs=415.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000511 281 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 360 (1455)
Q Consensus 281 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~ 360 (1455)
.++..+..+....|-.++-..++.+-..+.....+.++++++++.++++++.....+..++.+.++|..|...+++|..+
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~ 85 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAK 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666667666666554433344455667778888899999999999999999999999999999999999
Q ss_pred CCccccCCCChhHHHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 361 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN----SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 436 (1455)
Q Consensus 361 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~----~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~~~~~~~~~ 436 (1455)
++....+..++|+..+++..-++.+..... .....-..|+-+.++++++.+.-|+..++.+..+.+++ ..+++
T Consensus 86 ~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilvg~ 162 (559)
T COG4988 86 LGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILVGL 162 (559)
T ss_pred CChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 998888888999999999999998877443 23344456777777788887776665555444443333 44556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 437 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLM----KTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 512 (1455)
Q Consensus 437 ~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~----~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1455)
..++..+++++....-.+..-+-|+|+.++|.|+..+...++|. +.|+.-|+.++-.-.-.+..-++.... +...
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-iAlv 241 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-IALV 241 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66677778888888888888999999999999998766665554 456555655543322222233332222 2222
Q ss_pred HHHHHHHHHhC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCC
Q 000511 513 LFTFGLFALMG-HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 591 (1455)
Q Consensus 513 ~~~f~~~~~~~-~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~ 591 (1455)
.+.+ .+.+.+ |+++....+.++.+.--+-.|+..+...+..-.++.++.+++..|++.|............
T Consensus 242 Av~~-g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~------- 313 (559)
T COG4988 242 AVYI-GFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV------- 313 (559)
T ss_pred HHHH-HHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc-------
Confidence 2333 334455 6899999999999999999999999999999999999999999999877543311100000
Q ss_pred CccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC---
Q 000511 592 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668 (1455)
Q Consensus 592 ~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--- 668 (1455)
.+.+...+..+|.+|.|+..+ ++++|+||++++|++++|||+||||||||+++|+|+++|++|+|.++|
T Consensus 314 ---~~~~~~ei~~~~l~~~y~~g~-----~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 314 ---ANEPPIEISLENLSFRYPDGK-----PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred ---ccCCCceeeecceEEecCCCC-----cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 012234455669999997531 359999999999999999999999999999999999999999999986
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
+++||+|+|.||++||||||+++++ .+++...++++..+|.+.++. |+|.+|++||+|.+|||||+||
T Consensus 386 ~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 386 RDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred cccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHH
Confidence 5999999999999999999999987 668899999999999999998 9999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
|+||||++++++++|+|||||+||.++++.|.+. +.. +.+++|+|+||||++.+..||+|++|++|+++++|+|+++.
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 9999999999999999999999999999988887 444 67789999999999999999999999999999999999998
Q ss_pred hccccCccc
Q 000511 818 VSLYSGFWS 826 (1455)
Q Consensus 818 ~~~~~~~~~ 826 (1455)
.+.+.+..+
T Consensus 543 ~~~~~y~~l 551 (559)
T COG4988 543 EKQGLYANL 551 (559)
T ss_pred hcCcHHHHH
Confidence 776665543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=604.06 Aligned_cols=532 Identities=18% Similarity=0.218 Sum_probs=412.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348 (1455)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~ 348 (1455)
.++.+++.++..+++.++..++..+.|++++.++|.+...... ..+++.+++..++..+......+...++..+++.
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999999977543221 1111122223333444444445566778888899
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH-H--HHHHhHHHHHHHHHHH
Q 000511 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY-L--LYTQVKFAFVSGLAIT 424 (1455)
Q Consensus 349 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~-l--L~~~lg~a~l~g~~v~ 424 (1455)
.+...+|+|.++++...+.+.++|++++.++.|++.+..... .+..+...++.++++++ + +.+.+++.++ +++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l---~~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM---VLG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999999998888999999999999999976543 33333444444433222 2 2223333322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1455)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1455)
++...+..++.+++.+..++..+..++..+.+.|.++|+++||.++.|+.+.+++++..++-.+...+..........+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677777888888888889999999999999999999999998887777655433333333222222222221
Q ss_pred HHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000511 505 ATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1455)
Q Consensus 505 ~~~~--~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1455)
.... ..+.++.+|.|.+.++.++++.+++++.++..+..|+..+...+..+.++..+.+|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-- 324 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-- 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc--
Confidence 1111 223456678888888899999999999999999999999999999999999999999999975432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000511 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 662 (1455)
.+. .+.....++++|++|+|+.+ . ++|+|+||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~i~~~~v~~~y~~~--~---~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 325 -APE--------LPNVKGAVEFRHITFEFANS--S---QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred -CCC--------CCCCCCeEEEEEEEEECCCC--C---ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 000 01123469999999999642 2 359999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 663 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
+|.++| .++||+|+|++|++|++|||.++.+ .++++..++++.+++++.+..+|+|++|.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 999876 5899999999999999999999854 57778888999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. ..+++|+|+|||+++.++.||+|++|++|+++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998876 433 45689999999999999999999999999999
Q ss_pred EecCHHHHHhccccCc
Q 000511 809 WIGSSADLAVSLYSGF 824 (1455)
Q Consensus 809 ~~g~~~~l~~~~~~~~ 824 (1455)
+.|+++++.++.+.+.
T Consensus 549 ~~g~~~~l~~~~~~y~ 564 (585)
T TIGR01192 549 EKGSFQELIQKDGRFY 564 (585)
T ss_pred EECCHHHHHHCCChHH
Confidence 9999999987655443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-63 Score=615.95 Aligned_cols=435 Identities=22% Similarity=0.314 Sum_probs=327.9
Q ss_pred EcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------cE
Q 000511 605 QDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------------SI 670 (1455)
Q Consensus 605 ~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------------~i 670 (1455)
+|+++.|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 2 ~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 2 SNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 467777742 2359999999999999999999999999999999999999999999875 38
Q ss_pred EEEcCCCCCCC-cCHHHHhccCCC------CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 671 AYVPQVPWILS-GTIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 671 ~y~~Q~p~l~~-~ti~~nI~~g~~------~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
+|++|++.++. .|++||+.++.. .+.+ +..++++.+++. ........+|||||||||+
T Consensus 76 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred EEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHH
Confidence 99999998765 599999987631 1222 222333333332 1234456789999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||||+..+|+++||||||++||+.+.+++.+. +......++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 223 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM 223 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH
Confidence 99999999999999999999999999988776 33312357899999999998864 99999999999987665322100
Q ss_pred ccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhhHHHHH
Q 000511 819 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 898 (1455)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 898 (1455)
.+. .
T Consensus 224 -----------------------------------------------------~~~-------~---------------- 227 (491)
T PRK10982 224 -----------------------------------------------------DKI-------I---------------- 227 (491)
T ss_pred -----------------------------------------------------HHH-------H----------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 899 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 978 (1455)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 978 (1455)
..+..
T Consensus 228 --------------------~~~~~------------------------------------------------------- 232 (491)
T PRK10982 228 --------------------AMMVG------------------------------------------------------- 232 (491)
T ss_pred --------------------HHHhC-------------------------------------------------------
Confidence 00000
Q ss_pred hcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 979 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058 (1455)
Q Consensus 979 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~ 1058 (1455)
T Consensus 233 -------------------------------------------------------------------------------- 232 (491)
T PRK10982 233 -------------------------------------------------------------------------------- 232 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138 (1455)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1138 (1455)
+
T Consensus 233 -----------~-------------------------------------------------------------------- 233 (491)
T PRK10982 233 -----------R-------------------------------------------------------------------- 233 (491)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCcc
Q 000511 1139 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1218 (1455)
Q Consensus 1139 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1218 (1455)
. .. + ..+++. .+ +.+..
T Consensus 234 --------~--~~---------------------------------------~-----~~~~~~-----~~----~~~~~ 250 (491)
T PRK10982 234 --------S--LT---------------------------------------Q-----RFPDKE-----NK----PGEVI 250 (491)
T ss_pred --------C--cc---------------------------------------c-----cccccc-----CC----CCCcE
Confidence 0 00 0 000000 00 11225
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-HHhcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR-DLRGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~-~lR~~i~ 1297 (1455)
|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 8999999875 2599999999999999999999999999999999999999999999999999876654 4577899
Q ss_pred EEeCCCC---CCC-CcHHHhc-----CcCCC----CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHH
Q 000511 1298 VVPQSPF---LFE-GSLRDNL-----DPFHM----NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1298 ~VpQdp~---lf~-gTIreNL-----dp~~~----~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~ 1363 (1455)
|+||++. +|+ .|+++|. ..... .+..+.. ....+.++.+|+. .........||||||||++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 9999963 565 4777763 21111 1111111 1223344555553 2345566789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
||||++++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..++++++.
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTT 479 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999999997753 48999999999999875 8999999999999888776543
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-61 Score=604.26 Aligned_cols=468 Identities=19% Similarity=0.237 Sum_probs=352.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhh
Q 000511 949 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1028 (1455)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1028 (1455)
.++.++..+.....+.+...+++.++++++++.|++||++.++|++++|+++|++.+...+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44566677788888999999999999999999999999999999999999999999987554 35556667777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcH---HHHHHHHHHHHH
Q 000511 1029 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE---DYFMAKFKEHVV 1105 (1455)
Q Consensus 1029 ~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e---~~~~~~~~~~~~ 1105 (1455)
++.+.+|.++++++..+.+...+..+..+..+...+...+..+.+.+++.|.++|+++++ ++.+ +.+.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 777888877766555444444444444443343333445567788899999999999995 5443 456777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1106 LYQRTSYSELTASLWLSLRLQLLAAFI-ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEK 1184 (1455)
Q Consensus 1106 ~~~~~~~~~~~~~~wl~~~l~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~ 1184 (1455)
...+..+....... ....+..++ ...+++..++.. .. ...+.+.++....+...+..++..+...+.++..
T Consensus 220 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 220 EYRHHIIRADTFHL----SAVNWSNIMMLGAIGLVFYMAN--SL--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--Hh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554443222111 111111111 111111111111 00 1112233333333444566788899999999999
Q ss_pred HHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHH
Q 000511 1185 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1264 (1455)
Q Consensus 1185 ~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~ 1264 (1455)
...+.+|+.++.+.++|+......+ -|..+.|+|+||+|+|++ .+++|+|+||+|+|||++||+|+||||||||++
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFPRPQA---FPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHHHhccccccccccccc---cCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999976554321111111 122357999999999974 357999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCc
Q 000511 1265 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1344 (1455)
Q Consensus 1265 ~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLd 1344 (1455)
+|+|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| +...+|++++++++++++.+.++
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~----- 439 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE----- 439 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-----
Confidence 9999999999999999999999999999999999999999999999999 23456778888887776654432
Q ss_pred hhhhc---CCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhC
Q 000511 1345 TFVKE---SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMD 1419 (1455)
Q Consensus 1345 t~v~e---~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~D 1419 (1455)
.++ +|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||
T Consensus 440 --~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 440 --LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred --ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 222 378999999999999999999999999999999999999999999987654 4899999999999999999
Q ss_pred EEEEEeCCeEEEe-CChhHHhc
Q 000511 1420 EILILDHGHLVEQ-GNPQTLLQ 1440 (1455)
Q Consensus 1420 rI~vl~~G~ive~-G~p~eLl~ 1440 (1455)
+|++|++|+++|. |++.+-..
T Consensus 518 ~i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 518 RLLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred EEEEEECCEEEEecCCchhhhh
Confidence 9999999999988 55544443
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-61 Score=606.89 Aligned_cols=203 Identities=23% Similarity=0.285 Sum_probs=167.7
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcc
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1295 (1455)
+..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .+
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~ 388 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK 388 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence 346999999999964 3699999999999999999999999999999999999999999999964 2 16
Q ss_pred cEEEeCCC-CCCCC-cHHHhcCcCCCC----C-hHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHH
Q 000511 1296 FAVVPQSP-FLFEG-SLRDNLDPFHMN----D-DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1296 i~~VpQdp-~lf~g-TIreNLdp~~~~----~-d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
++|+||++ .+++. |+++|+...... . +.+.. +.++.+|+.. ........||||||||++||||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 99999997 56654 999999653211 1 11222 2344456643 3455566899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeC-CeEEE-eCChhHHhccC
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVE-QGNPQTLLQDE 1442 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~ive-~G~p~eLl~~~ 1442 (1455)
++.+|++|||||||++||+.+.+.+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.+ .|++++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~ 535 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDK 535 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHH
Confidence 99999999999999999999999999999875 4 499999999998876 899999986 88874 68898887653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=611.23 Aligned_cols=442 Identities=19% Similarity=0.244 Sum_probs=330.5
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|.. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 l~~~~l~~~~~~---~---~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 4 LQISQGTFRLSD---T---KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred EEEEeEEEEcCC---e---eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 789999999853 1 259999999999999999999999999999999999999999998754
Q ss_pred cEEEEcCCCCC---------CCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 SIAYVPQVPWI---------LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 ~i~y~~Q~p~l---------~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
.++|++|+|.+ +..|++||+.++.. ++++..++++..+++... .....+|||||||||+
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTL 145 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHH
Confidence 27999998753 14599999876532 345566777777665322 3345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||||+..+|+++||||||++||+...+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAEL-LASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999988876 33312347899999999998865 99999999999998776554321
Q ss_pred ccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhhHHHHH
Q 000511 819 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 898 (1455)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 898 (1455)
... . .+..+.
T Consensus 225 ~~~--------------------------------------------~-------~~~~~~------------------- 234 (490)
T PRK10938 225 QAL--------------------------------------------V-------AQLAHS------------------- 234 (490)
T ss_pred chh--------------------------------------------h-------hhhhhh-------------------
Confidence 000 0 000000
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 899 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 978 (1455)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 978 (1455)
..+ ..
T Consensus 235 --------------------~~~-~~------------------------------------------------------ 239 (490)
T PRK10938 235 --------------------EQL-EG------------------------------------------------------ 239 (490)
T ss_pred --------------------hcc-Cc------------------------------------------------------
Confidence 000 00
Q ss_pred hcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 979 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058 (1455)
Q Consensus 979 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~ 1058 (1455)
.
T Consensus 240 --------------------------~----------------------------------------------------- 240 (490)
T PRK10938 240 --------------------------V----------------------------------------------------- 240 (490)
T ss_pred --------------------------c-----------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138 (1455)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1138 (1455)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCcc
Q 000511 1139 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1218 (1455)
Q Consensus 1139 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1218 (1455)
.... ..+... ....+ +....
T Consensus 241 --------~~~~------------------------------------------------~~~~~~-~~~~~---~~~~~ 260 (490)
T PRK10938 241 --------QLPE------------------------------------------------PDEPSA-RHALP---ANEPR 260 (490)
T ss_pred --------ccCc------------------------------------------------cccccc-ccccC---CCCce
Confidence 0000 000000 00000 01225
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-CCceEEECCEeCCC-CChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIIN-TPVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-~~G~I~IdG~di~~-i~~~~lR~~i 1296 (1455)
|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.+||.++.. .+....|+++
T Consensus 261 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 261 IVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred EEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 999999999964 3599999999999999999999999999999999998876 69999999987632 2334568899
Q ss_pred EEEeCCCCCCC---CcHHHhcCcC--C---CC--ChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000511 1297 AVVPQSPFLFE---GSLRDNLDPF--H---MN--DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1297 ~~VpQdp~lf~---gTIreNLdp~--~---~~--~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1365 (1455)
+|+||++.++. .|+++++.+. . .. .+.+. +....+.++.+|++. ........||||||||++||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-----QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 99999986542 4677776421 1 01 01110 111233444456665 45555668999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhHhh--hCEEEEEeCCeEEEeC
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN--MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~-~-~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G 1433 (1455)
||++++|++|||||||++||+++.+.+.+.|++..+ + .|||+|||+++.+.. ||+|++|++|++++.-
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 999999999999999999999999999999988643 3 479999999999975 7999999999998764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-61 Score=604.12 Aligned_cols=480 Identities=22% Similarity=0.282 Sum_probs=332.6
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--cEEEEcCCCC
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 678 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~ 678 (1455)
.++++|++++|+.+ +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .||||+|+|+
T Consensus 4 ~i~~~nls~~~~~~-----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCC-----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 47899999998521 2359999999999999999999999999999999999999999999874 6999999999
Q ss_pred CCC-cCHHHHhccCCC-------------------CC--------HHHHHHHHHHhcchH---HHhhcc--CCCcccccC
Q 000511 679 ILS-GTIRDNILFGKN-------------------YD--------PQSYSETLKACTLDV---DISLMV--GGDMAYIGE 725 (1455)
Q Consensus 679 l~~-~ti~~nI~~g~~-------------------~~--------~~~~~~v~~~~~l~~---di~~l~--~gd~t~ig~ 725 (1455)
++. .|++|||.++.. .+ .+++.++++.++... .+..+- -|.. ....
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~ 157 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDA 157 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccC
Confidence 875 599999987521 01 012334444554321 111110 0111 1245
Q ss_pred CCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeC
Q 000511 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDK 804 (1455)
Q Consensus 726 ~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~ 804 (1455)
...+|||||||||+||||++.+|+++||||||++||+.+.+++.+. +.. . +.|+|+|||+++++.. ||+|++|++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~ 233 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQE-Y--PGTVVAVTHDRYFLDNVAGWILELDR 233 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHh-C--CCeEEEEeCCHHHHHhhcCeEEEEEC
Confidence 6779999999999999999999999999999999999999988876 332 2 3699999999999876 999999999
Q ss_pred CeEE-EecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhH
Q 000511 805 GQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELT 883 (1455)
Q Consensus 805 G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~ 883 (1455)
|+++ ..|+++++..... . . .+ ....+.+..+.
T Consensus 234 g~i~~~~g~~~~~~~~~~-------------~----~---------~~---------------~~~~~~~~~~~------ 266 (552)
T TIGR03719 234 GRGIPWEGNYSSWLEQKE-------------K----R---------LE---------------QEEKEESARQK------ 266 (552)
T ss_pred CEEEEecCCHHHHHHHHH-------------H----H---------HH---------------HHHHHHHHHHH------
Confidence 9975 6788877642100 0 0 00 00000000000
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 884 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 963 (1455)
Q Consensus 884 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1455)
.+.. ...|...
T Consensus 267 ----~~~~--------------------------~~~~~~~--------------------------------------- 277 (552)
T TIGR03719 267 ----ALKR--------------------------ELEWVRS--------------------------------------- 277 (552)
T ss_pred ----HHHH--------------------------HHHHHHh---------------------------------------
Confidence 0000 0000000
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000511 964 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043 (1455)
Q Consensus 964 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p 1043 (1455)
.+
T Consensus 278 -----------------~~------------------------------------------------------------- 279 (552)
T TIGR03719 278 -----------------SP------------------------------------------------------------- 279 (552)
T ss_pred -----------------hh-------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123 (1455)
Q Consensus 1044 ~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 1123 (1455)
.. ++. + . +
T Consensus 280 -------------~~-~~~-------~-----------------------------~--------~-------------- 287 (552)
T TIGR03719 280 -------------KA-RQA-------K-----------------------------S--------K-------------- 287 (552)
T ss_pred -------------hh-HHH-------H-----------------------------H--------H--------------
Confidence 00 000 0 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCccc
Q 000511 1124 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEE 1202 (1455)
Q Consensus 1124 ~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~-~~~~~e~ 1202 (1455)
......++..+. ...+++.
T Consensus 288 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 307 (552)
T TIGR03719 288 ------------------------------------------------------------ARLARYEELLSQEFQKRNET 307 (552)
T ss_pred ------------------------------------------------------------HHHHHHHhhhhhcccccCCC
Confidence 000000000000 0000000
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCE
Q 000511 1203 LCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1282 (1455)
Q Consensus 1203 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~ 1282 (1455)
.. ...+...-+.+..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++
T Consensus 308 ~~-~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~- 383 (552)
T TIGR03719 308 AE-IYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE- 383 (552)
T ss_pred ce-eecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-
Confidence 00 0000000011236999999999964 3699999999999999999999999999999999999999999999964
Q ss_pred eCCCCChHHHhcccEEEeCCCC-CCC-CcHHHhcCcCCC---CC--hHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCC
Q 000511 1283 NIINTPVRDLRGRFAVVPQSPF-LFE-GSLRDNLDPFHM---ND--DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISF 1354 (1455)
Q Consensus 1283 di~~i~~~~lR~~i~~VpQdp~-lf~-gTIreNLdp~~~---~~--d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~L 1354 (1455)
+ .+++|+||++. +++ -|+++|+..... .. +.+. .+.++.+|++. ........|
T Consensus 384 ~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~~~~~~~L 444 (552)
T TIGR03719 384 T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPS---------RAYVGRFNFKGSDQQKKVGQL 444 (552)
T ss_pred c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHH---------HHHHHhCCCChhHhcCchhhC
Confidence 2 16999999973 665 499999965321 11 1111 23344456653 345556689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeC-CeEEE-
Q 000511 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVE- 1431 (1455)
Q Consensus 1355 SgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-G~ive- 1431 (1455)
|||||||++||||++.+|++|||||||++||..+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++ |++++
T Consensus 445 SgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~ 522 (552)
T TIGR03719 445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWF 522 (552)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEe
Confidence 999999999999999999999999999999999999999999876 3 499999999999876 899999987 68874
Q ss_pred eCChhHHhcc
Q 000511 1432 QGNPQTLLQD 1441 (1455)
Q Consensus 1432 ~G~p~eLl~~ 1441 (1455)
.|+++++.+.
T Consensus 523 ~g~~~~~~~~ 532 (552)
T TIGR03719 523 EGNYSEYEED 532 (552)
T ss_pred CCCHHHHHHH
Confidence 4888777643
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-61 Score=531.66 Aligned_cols=459 Identities=25% Similarity=0.363 Sum_probs=346.2
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 668 (1455)
..+.++|.+.++.... ....++++|||++++||.+++||.||||||-..++++|.++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3467788887776542 234579999999999999999999999999999999999865 367888766
Q ss_pred -----------cEEEEcCCCCC-CCc--CHHHHh----ccCCCCC----HHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000511 669 -----------SIAYVPQVPWI-LSG--TIRDNI----LFGKNYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1455)
Q Consensus 669 -----------~i~y~~Q~p~l-~~~--ti~~nI----~~g~~~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~ 726 (1455)
+|+.++|+|-- .|. ||..-| ...+..+ +++..+.++..++.+- ...+...
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~y 154 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAY 154 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhC
Confidence 69999999952 232 555444 3433333 2344455555555321 1234456
Q ss_pred CCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcC-cccCCceEEEEccCcccccc-CCEEEEEeC
Q 000511 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHMLQKTRILCTHNVQAISA-ADMVVVMDK 804 (1455)
Q Consensus 727 g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~-~~~~~~t~ilvth~~~~l~~-ad~i~~l~~ 804 (1455)
...|||||||||-||.||..+|++||-||||.|||..+..+|++- +.. ....|..++++||++..+.. ||+|+||.+
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~L-l~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDL-LKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHH-HHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 679999999999999999999999999999999999999999986 332 13347899999999999986 999999999
Q ss_pred CeEEEecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHH
Q 000511 805 GQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTV 884 (1455)
Q Consensus 805 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~ 884 (1455)
|+++|+|+.+++...... .
T Consensus 234 G~ivE~~~t~~lF~~PqH-------------------------------------------------------------p 252 (534)
T COG4172 234 GEIVETGTTETLFAAPQH-------------------------------------------------------------P 252 (534)
T ss_pred cEEeecCcHHHHhhCCCC-------------------------------------------------------------h
Confidence 999998876554321000 0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSL 964 (1455)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1455)
| .
T Consensus 253 Y---T--------------------------------------------------------------------------- 254 (534)
T COG4172 253 Y---T--------------------------------------------------------------------------- 254 (534)
T ss_pred H---H---------------------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000511 965 RAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044 (1455)
Q Consensus 965 ~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~ 1044 (1455)
T Consensus 255 -------------------------------------------------------------------------------- 254 (534)
T COG4172 255 -------------------------------------------------------------------------------- 254 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLR 1124 (1455)
Q Consensus 1045 ~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1124 (1455)
+ ++
T Consensus 255 ------------r---~L-------------------------------------------------------------- 257 (534)
T COG4172 255 ------------R---KL-------------------------------------------------------------- 257 (534)
T ss_pred ------------H---HH--------------------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccc
Q 000511 1125 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC 1204 (1455)
Q Consensus 1125 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~ 1204 (1455)
++ .|+..
T Consensus 258 -----------------------------------------------------------------------l~--aeP~g 264 (534)
T COG4172 258 -----------------------------------------------------------------------LA--AEPSG 264 (534)
T ss_pred -----------------------------------------------------------------------Hh--cCCCC
Confidence 00 00000
Q ss_pred cCCCCCCCCCCCccEEEEEEEEEecCC---------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 000511 1205 GYQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1455)
Q Consensus 1205 ~~~~~~~~wp~~g~I~f~nvs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1275 (1455)
..++..-...-.++.+||...|+-. .-.+.++|||+.++||.+||||+||||||||-.+|+|+++++ |
T Consensus 265 --~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G 341 (534)
T COG4172 265 --DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G 341 (534)
T ss_pred --CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c
Confidence 0011111122357777888777422 124799999999999999999999999999999999999976 9
Q ss_pred eEEECCEeCCCCChHH---HhcccEEEeCCCC--CCC-CcHHHhcC----cCC-CCC----hHHHHHHHHHhcHHHHHHh
Q 000511 1276 QILVDGLNIINTPVRD---LRGRFAVVPQSPF--LFE-GSLRDNLD----PFH-MND----DLKIWSVLEKCHVKEEVEA 1340 (1455)
Q Consensus 1276 ~I~IdG~di~~i~~~~---lR~~i~~VpQdp~--lf~-gTIreNLd----p~~-~~~----d~ei~~aL~~~~l~~~i~~ 1340 (1455)
+|.++|.||...+.++ +|+++-+|.|||+ |=+ .||-+-+. -.. ..+ |+.+.+||+.+||+...
T Consensus 342 ~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~-- 419 (534)
T COG4172 342 EIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT-- 419 (534)
T ss_pred eEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH--
Confidence 9999999999888765 5789999999997 221 25554442 112 112 44566667666554322
Q ss_pred CCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-
Q 000511 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN- 1417 (1455)
Q Consensus 1341 lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~- 1417 (1455)
...-...|||||||||+||||++-+|++++||||||+||.--...|.+.+++.- .+-+-++|+|+|..++.
T Consensus 420 ------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl 493 (534)
T COG4172 420 ------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRAL 493 (534)
T ss_pred ------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHh
Confidence 234455799999999999999999999999999999999999999999998753 47799999999999986
Q ss_pred hCEEEEEeCCeEEEeCChhHHhccCCcHHHHH
Q 000511 1418 MDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1449 (1455)
Q Consensus 1418 ~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l 1449 (1455)
||+|+||.+|+|||+|+-++++++|...|.+-
T Consensus 494 ~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 494 CHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred hceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 89999999999999999999999998877653
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=637.91 Aligned_cols=545 Identities=19% Similarity=0.182 Sum_probs=399.4
Q ss_pred chHHHHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 264 SLVRAICCAYGYPYIC-LGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 341 (1455)
Q Consensus 264 ~l~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 341 (1455)
+.++..+++.++.... .+++.++..++....|+.++...+... +.......+. .+.++++.++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR-LSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556555443322 233445555667778888876665321 1111111221 122333333444444344455566
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000511 342 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSG 420 (1455)
Q Consensus 342 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g 420 (1455)
.+.+.-..+...+|+|.++.+...++..+.|+++|.++.|++.+..... .+..+...++.++.++.++.....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888999999999999999999999999999999999987544 445555666665555444433323332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 421 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500 (1455)
Q Consensus 421 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 500 (1455)
++++++...+..+..+..+..++.....+....+..+|.++|+++||.||+|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333334444444455555566666777899999999999999999999998887776555444433322233332
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 000511 501 VFFWATTPTLFSLFTFGLFAL-MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 579 (1455)
Q Consensus 501 ~~~~~~~~~~~~~~~f~~~~~-~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 579 (1455)
.........+ .++..+.+.+ ..+.+++|.+..++.+...+..|+..+...+..+..+.+|.+||.+|++.++..+...
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 2221111111 1222233333 3467999999999999999999999999999999999999999999997654321100
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000511 580 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~ 659 (1455)
. ...++. . -+.++.|+++|++|+|+++. +++|+|+||+|++||.++|||++|||||||+++|+|.++|
T Consensus 1271 ~-~~~~~~------~-wp~~g~I~f~nVsf~Y~~~~----~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1271 Q-ETAPPS------G-WPPRGRVEFRNYCLRYREDL----DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred c-CCCCCC------C-CCCCCcEEEEEEEEEeCCCC----cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 0 000100 0 02346799999999997542 2369999999999999999999999999999999999999
Q ss_pred CCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCC
Q 000511 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1455)
Q Consensus 660 ~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~ 726 (1455)
++|+|.++| +|+||||+|.||+|||||||....+++++...++++.|++++.+..+|+|.+|++||+
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 999999987 5999999999999999999983336888899999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 727 g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. ..+++|+|+|+||++.+..||+|++|++|+
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999887766 444 567899999999999999999999999999
Q ss_pred EEEecCHHHHHhccccCc
Q 000511 807 VKWIGSSADLAVSLYSGF 824 (1455)
Q Consensus 807 i~~~g~~~~l~~~~~~~~ 824 (1455)
|+|.|+|+|++++.+.+.
T Consensus 1497 IvE~G~~~eLl~~~~~f~ 1514 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQRGIFY 1514 (1522)
T ss_pred EEEECCHHHHHhCCCHHH
Confidence 999999999987654433
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-59 Score=537.44 Aligned_cols=512 Identities=23% Similarity=0.284 Sum_probs=407.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000511 285 VVNDSIGFAGPLLLNKLIKFLQQ--GSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 360 (1455)
Q Consensus 285 l~~~~~~~~~P~ll~~li~~~~~--~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~ 360 (1455)
+..-.+...+|++++.+++.+.. ..+ .......+.+++++.++.+++.-........+..++-......+|++.+.
T Consensus 40 ~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ 119 (591)
T KOG0057|consen 40 LGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMS 119 (591)
T ss_pred HhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33356677899999999999864 212 22334556677777888888888888888888888888889999999999
Q ss_pred CCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000511 361 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILL-IPVNKWIANLI 438 (1455)
Q Consensus 361 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~-~~~~~~~~~~~ 438 (1455)
++.+.+.+..+|++.+.|..-...|..... .+..+....+++.++...+++..|.+..+...+.+.. ......+..+-
T Consensus 120 ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~R 199 (591)
T KOG0057|consen 120 LDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWR 199 (591)
T ss_pred hhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHH
Confidence 999998889999999999888888877654 4566777888999989999999998765544433333 33344555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 000511 439 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL-FSLFTFG 517 (1455)
Q Consensus 439 ~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~ 517 (1455)
.+.+++++++.++..+..-+.|.|-.+||.|+-|+...++....-..--+...+.....++.++. ...+ ....++.
T Consensus 200 n~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfg---Q~~iFsv~~~~i 276 (591)
T KOG0057|consen 200 NRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFG---QKAIFSVALTFI 276 (591)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHH---HHHHHHHHHHHH
Confidence 77889999999999999999999999999999999988887665322222222222122222222 2111 1223333
Q ss_pred HHH----HhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCc
Q 000511 518 LFA----LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS 593 (1455)
Q Consensus 518 ~~~----~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~ 593 (1455)
.|+ +.++.+|.+...-..+++.+|..|+..+...+..+.++..-++-....+..++ + . +....|.
T Consensus 277 m~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~--~-i-~~~~~~i------- 345 (591)
T KOG0057|consen 277 MVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE--D-I-QEAALPI------- 345 (591)
T ss_pred HHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh--h-h-hhccCCc-------
Confidence 333 44568999999999999999999999999999988888877765443332111 1 1 1000111
Q ss_pred cCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----
Q 000511 594 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668 (1455)
Q Consensus 594 ~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----- 668 (1455)
...+..|+|+|++|+|.++ +++|+++||+||+||.+||+|+|||||||++++|+++++ ++|+|.++|
T Consensus 346 --~~~~~~I~F~dV~f~y~~k-----~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~ 417 (591)
T KOG0057|consen 346 --ELFGGSIEFDDVHFSYGPK-----RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKE 417 (591)
T ss_pred --ccCCCcEEEEeeEEEeCCC-----CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhh
Confidence 1234569999999999742 346999999999999999999999999999999999999 999999998
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCCC-CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
.||||||+..|||+||.+||.+|++. .+++..++++..++++-+..+|+|++|.+||+|..|||||||||+
T Consensus 418 ~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvs 497 (591)
T KOG0057|consen 418 VSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVS 497 (591)
T ss_pred hChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHH
Confidence 49999999999999999999999864 567777888888999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
||||+.+||+|+++|||||+||.+|++.+++. +.+ ...+||+|+|.||++.++.+|+|+++++|++.+.|+++|++..
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~-i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~ 575 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDM-IMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAP 575 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHH-HHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhh
Confidence 99999999999999999999999999999998 455 6789999999999999999999999999999999999999874
Q ss_pred c
Q 000511 820 L 820 (1455)
Q Consensus 820 ~ 820 (1455)
.
T Consensus 576 s 576 (591)
T KOG0057|consen 576 S 576 (591)
T ss_pred h
Confidence 3
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-59 Score=598.14 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=164.6
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 36999999999964 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEeCCC--CCCC-CcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSP--FLFE-GSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp--~lf~-gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||++ .+.. .|+.+|+.... ...++++.+ .+..+|+.. ........||||||||++||||++++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRD---------YLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHH---------HHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999985 3443 37888763211 112223333 344445542 34455568999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEE-EeCChhHHhc
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLLQ 1440 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~p~eLl~ 1440 (1455)
|++|||||||++||..+...+.+.|++. . .|||+|||+++.+.. ||||++|++|+++ ..|++++..+
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999999999999999876 4 599999999999876 8999999999998 6799988743
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-58 Score=588.83 Aligned_cols=199 Identities=24% Similarity=0.327 Sum_probs=164.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +++
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5899999999964 36999999999999999999999999999999999999999999999 4332 699
Q ss_pred EEeCCC-CCCCC-cHHHhcCcCCC-C--C--hHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1298 VVPQSP-FLFEG-SLRDNLDPFHM-N--D--DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1298 ~VpQdp-~lf~g-TIreNLdp~~~-~--~--d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
|++|++ .+++. |+++|+..... . . +.++ .+.+..+|+.. ........||||||||++||||++
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHV---------LGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHH---------HHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 999986 46655 99999965321 1 1 1122 23344445542 344455679999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEe-CCeEEEe-CChhHHhc
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-HGHLVEQ-GNPQTLLQ 1440 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-~G~ive~-G~p~eLl~ 1440 (1455)
++|++|||||||++||..+.+.+.+.|++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ |++++.++
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999875 5699999999999875 89999998 8999875 78888754
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=615.95 Aligned_cols=211 Identities=20% Similarity=0.299 Sum_probs=172.9
Q ss_pred cEEEEEEEEEecC-----------CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceEEECCEeC
Q 000511 1218 LIEFQNVTMRYKP-----------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1284 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~-----------~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--~~G~I~IdG~di 1284 (1455)
.+.|+||++.++. +...+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998742 123699999999999999999999999999999999999873 689999999886
Q ss_pred CCCChHHHhcccEEEeCCCCCCCC-cHHHhcCcCC------CCChHH----HHHHHHHhcHHHHHHhCCCchhhhcCC-C
Q 000511 1285 INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH------MNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESG-I 1352 (1455)
Q Consensus 1285 ~~i~~~~lR~~i~~VpQdp~lf~g-TIreNLdp~~------~~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G-~ 1352 (1455)
. ....|+.++||+|++.+++. |++|||.+.. ..++++ +.++++..+|.+. .|+.+|..+ .
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-----~~~~vg~~~~~ 1018 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-----KDAIVGLPGVT 1018 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-----hCCccCCCCCC
Confidence 4 34567889999999988765 9999996421 122222 3445555554432 255565433 4
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhhCEEEEEeC-Ce
Q 000511 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDH-GH 1428 (1455)
Q Consensus 1353 ~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~-G~ 1428 (1455)
.||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. + ..||++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 699999999999999999999999999999999999999999998864 48999999999984 3 56999999996 89
Q ss_pred EEEeCChh
Q 000511 1429 LVEQGNPQ 1436 (1455)
Q Consensus 1429 ive~G~p~ 1436 (1455)
++++|++.
T Consensus 1099 ~v~~G~~~ 1106 (1470)
T PLN03140 1099 VIYSGPLG 1106 (1470)
T ss_pred EEEECCcc
Confidence 99999874
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=581.39 Aligned_cols=547 Identities=22% Similarity=0.264 Sum_probs=395.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 884 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSS-QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFG 962 (1455)
Q Consensus 884 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1455)
+.+.-++..+|..++..++..+ ........+..+...++..... .+......|+...++..++..++.--..+.....
T Consensus 191 l~~al~~~f~~~~~~~~~~~~~-~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~ 269 (1381)
T KOG0054|consen 191 LLRALLRTFGRTFLLSGIFLFL-RDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRV 269 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 3344444444444333323222 2333555666666665543322 1222234455555566666666665556666778
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 000511 963 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1042 (1455)
Q Consensus 963 ~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 1042 (1455)
+.|.-..+-..+++|.++.+-.--..++.|+|+|-++.|.+.+++..++.-..+...+-.+++ +.++.....+-+++.+
T Consensus 270 g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~-l~lLy~~LG~sa~~G~ 348 (1381)
T KOG0054|consen 270 GMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILA-LYLLYGLLGPSALAGV 348 (1381)
T ss_pred hhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHH
Confidence 888888888889999999988887888999999999999999998776654444433322222 2222222122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1043 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1122 (1455)
Q Consensus 1043 p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ 1122 (1455)
.+++++.-++.+..+..+..+......+.......+|.++|+++||.|+||+.|.++..+.-+.-.+........+....
T Consensus 349 ~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~ 428 (1381)
T KOG0054|consen 349 AVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNS 428 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333444444444444444444455555678999999999999999999999987655543333222222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 000511 1123 LRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202 (1455)
Q Consensus 1123 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~ 1202 (1455)
... .....++.++.+..... ...+..++..+..++++.-.+..++..+......+-++.+|++|+.+|+..++.+
T Consensus 429 ~~~-~~~p~lv~~~tF~~~v~----~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~ 503 (1381)
T KOG0054|consen 429 FLN-FFSPVLVSVVTFVVFVL----LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELD 503 (1381)
T ss_pred HHH-HHHHHHHHHHHHHHHhh----ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 111 11122222222222110 1123456777777888888888888888888888889999999999999765433
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECC
Q 000511 1203 LCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1455)
Q Consensus 1203 ~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG 1281 (1455)
...... .+.-+.+-.|+++|.+|+++++ .++.|+||||+|++||.+||||++|||||||+++|+|-++..+|++.++|
T Consensus 504 ~~~~~~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g 582 (1381)
T KOG0054|consen 504 PDSVER-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG 582 (1381)
T ss_pred cccccc-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC
Confidence 211111 1222345579999999999863 44599999999999999999999999999999999999999999999988
Q ss_pred EeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHH
Q 000511 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQR 1359 (1455)
Q Consensus 1282 ~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQr 1359 (1455)
. ++||||+|++|+|||||||.++.+++++...++++.|+|++.++.+ |-.|+|||+|.|||||||
T Consensus 583 s-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 583 S-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred e-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 3 9999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHH-HHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHH
Q 000511 1360 QLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1360 Qrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I-~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eL 1438 (1455)
|||+||||++++++|.+||+|-|+||.++.+.| .+.|+...+++|+|.|||.++.+.+||+|+||++|+|+|.|+|+||
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 999999999999999999999999999997765 5677777899999999999999999999999999999999999999
Q ss_pred hccCCcHHHHHHHh
Q 000511 1439 LQDECSVFSSFVRA 1452 (1455)
Q Consensus 1439 l~~~~s~f~~l~~~ 1452 (1455)
++. ++.|.++.++
T Consensus 730 ~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 730 LKS-GGDFAELAHE 742 (1381)
T ss_pred Hhc-chhHHHHhhc
Confidence 975 5688887544
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=522.75 Aligned_cols=481 Identities=22% Similarity=0.265 Sum_probs=360.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHH-HHHHHH
Q 000511 941 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL-NILLAN 1019 (1455)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l-~~~~~~ 1019 (1455)
...+.++..++..+|...+.+.+.+.-.+++...+...+++|..--...+..+.++ |++.+...+...- ..++..
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCC
Confidence 34455667788889999999999999999999999999888876555444455444 5555554432110 011100
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHH
Q 000511 1020 FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099 (1455)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~ 1099 (1455)
-... ..+.+++...||+.++.+.-.++...+...-...+++--+..++....-..+..-+..+.++|+|.|......++
T Consensus 145 PW~P-~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~r 223 (580)
T COG4618 145 PWMP-LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKR 223 (580)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHH
Confidence 0011 122334445666655544433333333322223333333333444445556778889999999999998877777
Q ss_pred HHHHHHHH----HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 000511 1100 FKEHVVLY----QRTSYSELT---ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1172 (1455)
Q Consensus 1100 ~~~~~~~~----~~~~~~~~~---~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l 1172 (1455)
+.+....+ .++...... ..+-+-..+|. .+ .++.+.+. -.+..++|.+...-........++
T Consensus 224 W~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs---~i---Lg~GA~Lv-----i~ge~t~G~mIA~SIl~gRaLaPi 292 (580)
T COG4618 224 WGRFNAAYLSAQERASDRNGAFGALSRALRMALQS---AV---LGLGAWLV-----IKGEITPGMMIAGSILSGRALAPI 292 (580)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HH---HhcceeeE-----EcCcCCcchhhHHHHHhhhhhccH
Confidence 65544433 333322211 11111111111 11 11111111 134567777766666666677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEE
Q 000511 1173 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1252 (1455)
Q Consensus 1173 ~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIv 1252 (1455)
...+..|.++..+..|..|+.++++..++....- ..| ..+|.+.++++++.=++..+|+|+|+||+++|||-+||+
T Consensus 293 d~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m-~LP---~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgII 368 (580)
T COG4618 293 DLAIANWKQFVAARQSYKRLNELLAELPAAAERM-PLP---APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGII 368 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC-CCC---CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEE
Confidence 9999999999999999999999997665542211 111 136899999999976666679999999999999999999
Q ss_pred CCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHH
Q 000511 1253 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEK 1331 (1455)
Q Consensus 1253 GrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~ 1331 (1455)
||||||||||.++|.|..+|.+|+|.+||-|+.+.+.+++-++|||.|||..||+|||.|||.-++ +.+++.|.+|.+.
T Consensus 369 GPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~l 448 (580)
T COG4618 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARL 448 (580)
T ss_pred CCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997666 6677789999999
Q ss_pred hcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEe
Q 000511 1332 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITI 1408 (1455)
Q Consensus 1332 ~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~I 1408 (1455)
++.+|.|-.+ ||||.+||+|..|||||||||+||||++.+|++++||||.||||.+-|+.+.++|.+.. +++|+|+|
T Consensus 449 AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvi 528 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528 (580)
T ss_pred cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999 99999999999999999999999999999999999999999999999999999997764 69999999
Q ss_pred ccChhhHhhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1409 AHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1409 aHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 529 aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=515.94 Aligned_cols=539 Identities=19% Similarity=0.228 Sum_probs=386.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1455)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1455)
++...+ .++.++..+++.++..+....-=++-..+|..-.-... .-.-++-+++.=+..+..++..+.-........
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334444 56666666655554444333333333333332111111 112223344444556677777666666677788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHhHHHHHHHH
Q 000511 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW-SLP-FQIGVALYLLYTQVKFAFVSGL 421 (1455)
Q Consensus 344 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~-~~p-l~i~i~~~lL~~~lg~a~l~g~ 421 (1455)
.++-+.+.-.+|+|....+.........|++.|.+..|++.+++...-...-| .+. +.+++.+.+-+..++.+.+.++
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 89999999999999999998888888999999999999999998654332222 222 2233333344666777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1455)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1455)
...++.+.+...+.+.-++..++..+.+..--+.+.+.+.|....+++|.++.+.+.+++.-..-.+.-++...+..+..
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555555566666666666666778899999999999999998888776543333333333333333333
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhCCCCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000511 502 FFWATTPTLF---SLFTFGLFALMGHQLD-AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1455)
Q Consensus 502 ~~~~~~~~~~---~~~~f~~~~~~~~~L~-~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1455)
++..+...+. .+++++.-. -.|..+ +..+...+..|..+..-....|.++..+.+...|.+|+.+.++.++....
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~-~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~ 325 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQV-GAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF 325 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCC
Confidence 3322221111 122222211 223344 33333333334433321222236778888999999999999876543221
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000511 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 657 (1455)
. . ... ...+..++++|++|+|+..+ .++|+|+||++++||.++|+|++|||||||++.|.|.+
T Consensus 326 ~-~-~~~-----------~~~~~~l~~~~vsF~y~~~~----~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~ 388 (573)
T COG4987 326 P-D-EQT-----------ATTGQALELRNVSFTYPGQQ----TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW 388 (573)
T ss_pred C-c-ccc-----------CCccceeeeccceeecCCCc----cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc
Confidence 1 0 000 11223789999999998642 34699999999999999999999999999999999999
Q ss_pred cCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccc
Q 000511 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 723 (1455)
Q Consensus 658 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~i 723 (1455)
+|++|+|..+| .+++++|.+.+|++|+|||+..+++ -++|...++++..+|++-++..|+|.+|.+
T Consensus 389 ~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l 468 (573)
T COG4987 389 DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL 468 (573)
T ss_pred CCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchh
Confidence 99999999987 5899999999999999999999886 467888999999999999999999999999
Q ss_pred cCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEe
Q 000511 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 803 (1455)
Q Consensus 724 g~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 803 (1455)
||+|..||||||||+||||++.+|++++||||||.+||+.|++++++. +.. ..+|||+|+||||+..++.+|+|++|+
T Consensus 469 ge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~-~~~~kTll~vTHrL~~le~~drIivl~ 546 (573)
T COG4987 469 GEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFE-HAEGKTLLMVTHRLRGLERMDRIIVLD 546 (573)
T ss_pred ccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHH-HhcCCeEEEEecccccHhhcCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 444 577999999999999999999999999
Q ss_pred CCeEEEecCHHHHHhccccCcc
Q 000511 804 KGQVKWIGSSADLAVSLYSGFW 825 (1455)
Q Consensus 804 ~G~i~~~g~~~~l~~~~~~~~~ 825 (1455)
+|+++++|+|.+++.+++.+.+
T Consensus 547 ~Gkiie~G~~~~Ll~~~g~~~~ 568 (573)
T COG4987 547 NGKIIEEGTHAELLANNGRYKR 568 (573)
T ss_pred CCeeeecCCHHhhhccccHHHH
Confidence 9999999999999886655443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-56 Score=610.18 Aligned_cols=471 Identities=18% Similarity=0.207 Sum_probs=354.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000511 343 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGL 421 (1455)
Q Consensus 343 ~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~ 421 (1455)
+.+....+...+|++.++.+...++..+.|+++|.++.|++.+..... .+..+....+.++..+.++.....+.+++.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677889999999999999999999999999999999988544 3445555555555444443332223322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1455)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1455)
+++++...+..++.+..+..++......+.-.+.++|.++|+++||.|+.|+.+.++..+.-+...+...+......+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333344455555566666667777788999999999999999999999888876654444443333222222222
Q ss_pred HHHHHH--HHHHHHHHHHHH--HHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch-
Q 000511 502 FFWATT--PTLFSLFTFGLF--ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH- 576 (1455)
Q Consensus 502 ~~~~~~--~~~~~~~~f~~~--~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~- 576 (1455)
...... ..++.++.++++ ....+.++++.+..++.+...+..|+..+...+..+..+..|++||.+|++..+.++
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 211111 111112222222 222345789988888888899999999999999999999999999999996422111
Q ss_pred -hhhh-------hcCCCCc------ccCCC----ccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEE
Q 000511 577 -ELEQ-------AANSPSY------ISNGL----SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638 (1455)
Q Consensus 577 -~~~~-------~~~~~~~------~~~~~----~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~i 638 (1455)
.... ....+.+ ..... .......+.|+|+|++|+|+++. +++|+|+||+|++||.++|
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~----~~vL~~vsf~I~~GekVaI 1341 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGL----PLVLRGVSFRIAPREKVGI 1341 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCC----CceeecceEEECCCCEEEE
Confidence 0000 0000000 00000 00011235799999999997531 2369999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHH
Q 000511 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA 705 (1455)
Q Consensus 639 vG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~ 705 (1455)
||++|||||||+++|+|.++|++|+|.++| .|+|+||+|.||+|||||||..+.++++++..++++.
T Consensus 1342 VGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHH
Confidence 999999999999999999999999999987 5999999999999999999988778899999999999
Q ss_pred hcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccC-CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEE
Q 000511 706 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG-SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784 (1455)
Q Consensus 706 ~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~-~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~i 784 (1455)
|++++.++.+|+|.+|.+||+|.+||||||||++||||++++ |+|+|||||||+||+++++.|.+. +.. ..+++|+|
T Consensus 1422 a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~-~~~~~TvI 1499 (1560)
T PTZ00243 1422 VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMS-AFSAYTVI 1499 (1560)
T ss_pred CCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HCCCCEEE
Confidence 999999999999999999999999999999999999999996 899999999999999999988766 443 45789999
Q ss_pred EEccCccccccCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 785 LCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 785 lvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
+|+||++.+..||+|++|++|+|++.|+|+|++++
T Consensus 1500 ~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~ 1534 (1560)
T PTZ00243 1500 TIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMN 1534 (1560)
T ss_pred EEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-57 Score=573.86 Aligned_cols=199 Identities=22% Similarity=0.333 Sum_probs=162.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..++++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999543 4699999999999999999999999999999999999999999999875 3579
Q ss_pred EEEeCCCCCCCCcHHHhcC--c---CCCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1297 AVVPQSPFLFEGSLRDNLD--P---FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1297 ~~VpQdp~lf~gTIreNLd--p---~~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+|+||++. ...++.+|.. . +...+++++.++|+.. |++. ........||||||||++||||+++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~---------gl~~~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF---------GVTGNLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC---------CCChHHhcCCccccCHHHHHHHHHHHHHhc
Confidence 99999973 2224444421 1 1122344455555444 4542 3344566899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEE-EeCChhHHh
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-EQGNPQTLL 1439 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv-e~G~p~eLl 1439 (1455)
+|++|||||||++||..+.+.+.+.+++. + .|||+|||+++.+.. ||||++|++|+++ ..|++++..
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 99999999999999999999999988764 4 599999999999986 8999999999998 568887753
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=554.12 Aligned_cols=522 Identities=16% Similarity=0.116 Sum_probs=375.6
Q ss_pred HHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 269 ICC-AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1455)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 347 (1455)
+++ .+++.++..+++.++..++....|.+++.+++..... .....+. +++..++..++.....+...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-GQGSLFS----FGGLCLLALLFRIGADIFPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 7788888888899999999999999999887632111 1111111 112233444555566677788899999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHH
Q 000511 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLAITIL 426 (1455)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~-~lL~~~lg~a~l~g~~v~~~ 426 (1455)
..+...+|+|.++++...+.+.++|++++.++.|++.+......+..+....+.+++++ ++++....++.+ .++++++
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li-~l~~~~~ 164 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAI-TISAIII 164 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 99999999999999999888889999999999999999987655555554444443333 333333322222 2222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 427 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQ--IFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1455)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~--~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1455)
.+.+..+..++..+..++..+..++..+.+.|.+.|+++||.++.++ ...+++++.-++..+...+..........+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFG 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566677777888888899999999999999999999854 3333333322221121111111111111111
Q ss_pred HHHHHHHH--HHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000511 505 ATTPTLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1455)
Q Consensus 505 ~~~~~~~~--~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1455)
.....+.. .+.++. ..+.++.+.+++++.+...+..|+..+...++.+.++.+|.+||.++++.++.++......
T Consensus 245 ~~~~~~~~~~~~~~~~---~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~ 321 (555)
T TIGR01194 245 QLLFFLLIGCALFAAA---MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELS 321 (555)
T ss_pred HHHHHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 11111111 111111 1257999999999999999999999999999999999999999999986422111000000
Q ss_pred CCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000511 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G 662 (1455)
.... ............++++|++|+|+..+. ..+++|+|+||++++|++++|+||||||||||+++|+|+++|++|
T Consensus 322 ~~~~---~~~~~~~~~~~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G 397 (555)
T TIGR01194 322 DADN---VLLLAHDKSVDSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397 (555)
T ss_pred cccc---ccccccCCCCceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 0000 000000012356999999999974311 112469999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000511 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1455)
Q Consensus 663 ~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~ 729 (1455)
+|.++| .++||+|+|++|++|+++|+ ..+.++++..++++.++++++++.+|+|++|. .+
T Consensus 398 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~ 470 (555)
T TIGR01194 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470 (555)
T ss_pred EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----cc
Confidence 999986 48999999999999999996 33456778889999999999999999999984 78
Q ss_pred cccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEE
Q 000511 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 809 (1455)
Q Consensus 730 LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~ 809 (1455)
||||||||++||||++++|+|+|||||||+||+++++.+.+.++.....+++|+|+||||++.+..||+|++|++|++++
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887643221235899999999999999999999999999986
Q ss_pred e
Q 000511 810 I 810 (1455)
Q Consensus 810 ~ 810 (1455)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 3
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=509.70 Aligned_cols=520 Identities=22% Similarity=0.287 Sum_probs=384.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 283 LKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIALGLTSI---LKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKC 358 (1455)
Q Consensus 283 ~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~g~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~r~~L~~~iy~K~ 358 (1455)
+.++.-++...-|.+.+.+++.+..+.. .+......+.+.+++- +..++.+...+...++..-....+-..+|+|.
T Consensus 223 ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHl 302 (790)
T KOG0056|consen 223 LLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHL 302 (790)
T ss_pred HHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHH
Confidence 3444556677789999999988874211 1111122223333321 23566666777666777767777888999999
Q ss_pred hcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHH
Q 000511 359 LYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI---PVNKWIA 435 (1455)
Q Consensus 359 L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v~~~~~---~~~~~~~ 435 (1455)
..++....-.+.+|++...|..-+..+.-.-..+..+-...+.+++++ .|..+..-...|+++++.+. .+...+.
T Consensus 303 h~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~--vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iT 380 (790)
T KOG0056|consen 303 HNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAM--VYFFIKFNIWFGLIVFLMMLLYCYVTIKIT 380 (790)
T ss_pred HhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhh--hhhhhhHhHHHHHHHHHHHHHHhheeeeee
Confidence 999987766678899999987766666522223333434444455444 33334444444544433322 2222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 436 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLM----KTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 511 (1455)
Q Consensus 436 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~----~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~ 511 (1455)
..-.++++++...-.+--..-.+.|-|-.+||.|+.|+...++.. +..++|-+.+.....+....+.+... .+.
T Consensus 381 eWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gll 458 (790)
T KOG0056|consen 381 EWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GLL 458 (790)
T ss_pred hhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHh
Confidence 444455666655555555666788889999999999977665544 33444444443333333222221111 112
Q ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCC
Q 000511 512 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 591 (1455)
Q Consensus 512 ~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~ 591 (1455)
....+.+|.+..+.+++|...-+..++-.+.+|++.+......++...+-++|+.+.++.++...+. +..++
T Consensus 459 ~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~---P~a~p----- 530 (790)
T KOG0056|consen 459 AGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL---PGAPP----- 530 (790)
T ss_pred hhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC---CCCCC-----
Confidence 2233456767788899999888888999999999999999999999999999999999754322111 11111
Q ss_pred CccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC---
Q 000511 592 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668 (1455)
Q Consensus 592 ~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--- 668 (1455)
.....+.|+++|++|+|+++ +++|+||||+++||+.+++|||+|+||||++++|.+.++..+|+|.++|
T Consensus 531 ---l~~~~G~i~fsnvtF~Y~p~-----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI 602 (790)
T KOG0056|consen 531 ---LKVTQGKIEFSNVTFAYDPG-----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI 602 (790)
T ss_pred ---ccccCCeEEEEEeEEecCCC-----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence 12356789999999999754 3459999999999999999999999999999999999999999999997
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCCC-CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
+||.||||..|||.||..||.++++- ..|...++.+|++.++.|..+|+|++|.|||+|-.||||+|||
T Consensus 603 rnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 603 RNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 59999999999999999999999863 4456667889999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
||+||++.++|.|++|||+|||||.++++.|-.. +.. +..++|.|+|.||++.+-+||.|+++++|+|+|.|+|+|+.
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaa-L~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAA-LAR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH-HHH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHH
Confidence 9999999999999999999999999999987554 433 77899999999999999999999999999999999999998
Q ss_pred hc-cccCc
Q 000511 818 VS-LYSGF 824 (1455)
Q Consensus 818 ~~-~~~~~ 824 (1455)
.. ++.+.
T Consensus 761 ~rdgG~Ya 768 (790)
T KOG0056|consen 761 KRDGGAYA 768 (790)
T ss_pred hccCCcHH
Confidence 76 44433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-56 Score=544.00 Aligned_cols=484 Identities=23% Similarity=0.299 Sum_probs=338.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--cEEEEcCCCC
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 678 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~ 678 (1455)
.+.++|++++|.. +++|+|+||++.+|+.++|||+|||||||||++|.|+..|++|+|...+ ++||++|+|.
T Consensus 3 ~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 4778899999842 3459999999999999999999999999999999999999999999986 7999999999
Q ss_pred CCCc-CHHHHhccCCCC-C--HHHHHHHH---------------------HHhcchHHHhhccCC--CcccccCCCCccc
Q 000511 679 ILSG-TIRDNILFGKNY-D--PQSYSETL---------------------KACTLDVDISLMVGG--DMAYIGEKGVNLS 731 (1455)
Q Consensus 679 l~~~-ti~~nI~~g~~~-~--~~~~~~v~---------------------~~~~l~~di~~l~~g--d~t~ig~~g~~LS 731 (1455)
.... ||+|.+..+... . ..+|+++. ....++.+++..-.| .... .....+||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 9865 999999876421 0 01111111 111222233222222 1111 34557899
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEE-E
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK-W 809 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~-~ 809 (1455)
||||.||+|||||..+||+|||||||++||..+.+|+-+.+ . ..+| |+|+|||+.++|.. |++|+.+++|++. +
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L-~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL-K--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 99999999999999999999999999999999999998873 2 2345 99999999999997 9999999999864 6
Q ss_pred ecCHHHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHh
Q 000511 810 IGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYA 889 (1455)
Q Consensus 810 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 889 (1455)
.|.|+...+..... . .. +. ...+..+++.++
T Consensus 232 ~Gny~~~~~~r~~~---------------~---------~~-----~~-------~~~~~~~~~~~~------------- 262 (530)
T COG0488 232 KGNYSSYLEQKAER---------------L---------RQ-----EA-------AAYEKQQKELAK------------- 262 (530)
T ss_pred cCCHHHHHHHHHHH---------------H---------HH-----HH-------HHHHHHHHHHHH-------------
Confidence 77777664321000 0 00 00 000000000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 890 KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 969 (1455)
Q Consensus 890 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1455)
+..|+..
T Consensus 263 ----------------------------~~~~i~r--------------------------------------------- 269 (530)
T COG0488 263 ----------------------------EQEWIRR--------------------------------------------- 269 (530)
T ss_pred ----------------------------HHHHHHH---------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000511 970 VHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYS 1049 (1455)
Q Consensus 970 lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~ 1049 (1455)
+..
T Consensus 270 ----------------------------~~~------------------------------------------------- 272 (530)
T COG0488 270 ----------------------------GKA------------------------------------------------- 272 (530)
T ss_pred ----------------------------HHh-------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1050 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLA 1129 (1455)
Q Consensus 1050 ~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~ 1129 (1455)
...++++
T Consensus 273 -----~~~~~k~-------------------------------------------------------------------- 279 (530)
T COG0488 273 -----AASKAKK-------------------------------------------------------------------- 279 (530)
T ss_pred -----ccchHHH--------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCcc-cccc-
Q 000511 1130 AFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY--MDVPQE-ELCG- 1205 (1455)
Q Consensus 1130 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~--~~~~~e-~~~~- 1205 (1455)
.+......+++.+- ...|.+ ....
T Consensus 280 ----------------------------------------------------a~sr~k~l~k~~~~~~~~~~~~~~~~~~ 307 (530)
T COG0488 280 ----------------------------------------------------AKSRIKRLEKLEARLAEERPVEEGKPLA 307 (530)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHhhhhhcccccccccce
Confidence 00000111111110 000000 0000
Q ss_pred -CCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeC
Q 000511 1206 -YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1455)
Q Consensus 1206 -~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di 1284 (1455)
...+++.-..+-.++++|+++.|+++ .++++++||.|++|++|||+||||+|||||+++|.|...|.+|+|.+.-
T Consensus 308 ~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~--- 383 (530)
T COG0488 308 FRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE--- 383 (530)
T ss_pred eeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC---
Confidence 00011111224479999999999755 6799999999999999999999999999999999999999999998853
Q ss_pred CCCChHHHhcccEEEeCCC-CCCC-CcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1285 INTPVRDLRGRFAVVPQSP-FLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1285 ~~i~~~~lR~~i~~VpQdp-~lf~-gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
.-++||.+|+- .+++ .|+-|++....+ ..+.++...|.+.++... .+......||||||-|
T Consensus 384 --------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~--------~~~~~v~~LSGGEk~R 447 (530)
T COG0488 384 --------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE--------DQEKPVGVLSGGEKAR 447 (530)
T ss_pred --------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH--------HHhCchhhcCHhHHHH
Confidence 13699999998 3443 388888865442 235677777766654321 1223334699999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEe-CChhHHh
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ-GNPQTLL 1439 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~-G~p~eLl 1439 (1455)
+.||+.++.+|++|||||||++||.+|.+.+.++|.++ +-|||+|||+.+.+.. |++|+++++ ++.++ |++++..
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 99999999999999999999999999999999999765 4599999999999987 899999999 88887 8998887
Q ss_pred ccC
Q 000511 1440 QDE 1442 (1455)
Q Consensus 1440 ~~~ 1442 (1455)
+..
T Consensus 525 ~~~ 527 (530)
T COG0488 525 EQK 527 (530)
T ss_pred Hhh
Confidence 643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=556.89 Aligned_cols=513 Identities=15% Similarity=0.127 Sum_probs=389.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 896 ITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS----TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 971 (1455)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh 971 (1455)
.+++.+++.++...+....+++.+...+.....+ ... ...++++++++.++..+..++...+......+...++|
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~-~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS-PRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666777766665421111 111 11233334444455555556666666677778888888
Q ss_pred HHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHH
Q 000511 972 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSK 1050 (1455)
Q Consensus 972 ~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~p~~~~~~~ 1050 (1455)
++.+++....++.|||. ++|++.+|+++|++.+.+.+...+..++..++.+++.++.+.. .+|.+.++++...++...
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 88888888889999997 7899999999999999999988888888888888877766664 566655555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1051 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1130 (1455)
Q Consensus 1051 i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~ 1130 (1455)
+.+++.+..+++.+......+.+.+.+.|.++|+++||+|+.|+.+.+++.+..++..+..+.......++....+++..
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56666666666666677777888999999999999999999999999999999999888888887777777776666543
Q ss_pred HH---HHHHHH-HHHHhhcCCCCCCcchHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Q 000511 1131 FI---ISFIAT-MAVIGSRGNLPATFSTPGL-VGLALSY---AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202 (1455)
Q Consensus 1131 ~~---~~~~~~-~~v~~~~~~~~~~~~~~g~-vgl~l~~---~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~ 1202 (1455)
.. +..+.. ..++...+ ...+..+.|. ++..+.+ ...+..++..+...+.++....++.+|+.++.+.++|.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~-~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTH-PAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHHhccc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111 11221110 0012344443 3333333 56668889999999999999999999999999764432
Q ss_pred ccc-------CC-C------------C--CCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHH
Q 000511 1203 LCG-------YQ-S------------L--SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1260 (1455)
Q Consensus 1203 ~~~-------~~-~------------~--~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKS 1260 (1455)
... .. . + .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKS 492 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKS 492 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHH
Confidence 100 00 0 0 0001134679999999999643 4699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCC--------CCChHHHHHHHHHh
Q 000511 1261 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH--------MNDDLKIWSVLEKC 1332 (1455)
Q Consensus 1261 TLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~--------~~~d~ei~~aL~~~ 1332 (1455)
||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|||+.... ..++++++++++.+
T Consensus 493 TLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 561 (659)
T TIGR00954 493 SLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNV 561 (659)
T ss_pred HHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHc
Confidence 999999999999999999874 67899999999999999999997532 24678899999999
Q ss_pred cHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q 000511 1333 HVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411 (1455)
Q Consensus 1333 ~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHr 1411 (1455)
++.+.++.- |+|+..+. +.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||
T Consensus 562 ~l~~~~~~~~g~~~~~~~-~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~ 638 (659)
T TIGR00954 562 QLTHILEREGGWSAVQDW-MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638 (659)
T ss_pred CCHHHHhhcCCccccccc-ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCc
Confidence 999988766 99998764 5699999999999999999999999999999999999999999999874 8999999999
Q ss_pred hhhHhhhCEEEEEeC
Q 000511 1412 ISTVLNMDEILILDH 1426 (1455)
Q Consensus 1412 l~ti~~~DrI~vl~~ 1426 (1455)
++++..||+|++|+.
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999999999999973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=558.67 Aligned_cols=191 Identities=21% Similarity=0.321 Sum_probs=161.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEeCCCCC-CCCcHHHhcCcCC-CCC-hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1298 VVPQSPFL-FEGSLRDNLDPFH-MND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~VpQdp~l-f~gTIreNLdp~~-~~~-d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
|+||++.+ ++.|+++|+.... ... +... .+.++.+|++.........||||||||++|||||+++|+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYK---------SEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHH---------HHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999875 4569999986431 111 1122 3344445665555666678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
|||||||++||.++...+.+.|++.. .++|+|+|||+++.+.. ||||++|+ |++...|+
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 99999999999999999999998864 37899999999999875 89999996 48877766
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=582.50 Aligned_cols=539 Identities=17% Similarity=0.244 Sum_probs=384.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCC--cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 883 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTK--YSTSFYLVVLCIFCMFNSFLTLVRAFSFA 960 (1455)
Q Consensus 883 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 960 (1455)
+..+..++..+|..+... +..++..++...+++.+...++........ .....|++.++++.++..++.....+...
T Consensus 69 ~L~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~ 147 (1490)
T TIGR01271 69 KLLNALRRCFFWRFVFYG-ILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLH 147 (1490)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554454443333 223444555566666666554432111111 11222333444444555555555566666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000511 961 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1040 (1455)
Q Consensus 961 ~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~ 1040 (1455)
..+.+....+...+++++++.+...+++.++|+++|+++.|++.++..+.... .+....+.++..++++.....+..++
T Consensus 148 ~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi~i~~~~~lL~~~~G~~~l~ 226 (1490)
T TIGR01271 148 HLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH-FVWIAPLQVILLMGLIWELLEVNGFC 226 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888999999999999999999999999999999998765543 23333344444444444444444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1041 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1120 (1455)
Q Consensus 1041 ~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w 1120 (1455)
.+.+++++..++.+..+.....++..............|.++|+++||.|+||+.|.+++.+..+...+..........|
T Consensus 227 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~ 306 (1490)
T TIGR01271 227 GLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF 306 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444445555555556666778899999999999999999999998887766655544333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 000511 1121 LSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL-GNFLSSFTETEKEMVSLERVLEYMDVP 1199 (1455)
Q Consensus 1121 l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l-~~l~~~~~~~e~~~~s~~Ri~~~~~~~ 1199 (1455)
..... .....++.++.+...... ...+++.+..++++...+..++ ..+...+..+.++.+|++||.+|++.+
T Consensus 307 ~~~~~-~~~~~~~~~~~f~~y~~~------~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~ 379 (1490)
T TIGR01271 307 YSSAF-FFSGFFVVFLSVVPYALI------KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKE 379 (1490)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 21111 111111111111111111 1124555555566665555554 457777888888999999999999765
Q ss_pred ccccccCCCCCCCCCCCccEEEEEEEEEecCC--------------------------------CCcceeeeeEEEeCCc
Q 000511 1200 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS--------------------------------LPAALHDINFTIEGGT 1247 (1455)
Q Consensus 1200 ~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~--------------------------------~~~vL~~isl~I~~Ge 1247 (1455)
+.+.... . +....|+++|++|.|+.. .+++|+|+||+|++||
T Consensus 380 e~~~~~~-----~-~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~ 453 (1490)
T TIGR01271 380 EYKTLEY-----N-LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQ 453 (1490)
T ss_pred ccccccc-----c-CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCC
Confidence 4321110 0 112358888888888421 1368999999999999
Q ss_pred EEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHH
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327 (1455)
Q Consensus 1248 kvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~ 1327 (1455)
+++|+||+|||||||+++|+|+++|++|+|.+|| +++||||+|++|++||||||.++..+++++..+
T Consensus 454 ~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~ 520 (1490)
T TIGR01271 454 LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTS 520 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccccchHHHHH
Confidence 9999999999999999999999999999999998 599999999999999999998776666677888
Q ss_pred HHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHH-HHHHhcCCcE
Q 000511 1328 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN-AISSECKGMT 1404 (1455)
Q Consensus 1328 aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~-~i~~~~~~~T 1404 (1455)
+++.|++.+.++.+ |.+|.+|++|.+||||||||++||||++++|+|+|||||||+||+++++.|.+ .+++..+++|
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t 600 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 99999999999988 89999999999999999999999999999999999999999999999999987 4677778999
Q ss_pred EEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1405 VITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1405 vI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
+|+|||+++.+..||+|++|++|++++.|+++++.+.. +.|.+.+
T Consensus 601 vilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 601 RILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 99999999999999999999999999999999998753 4566655
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-53 Score=531.09 Aligned_cols=508 Identities=17% Similarity=0.154 Sum_probs=362.2
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAG-PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1455)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1455)
+++.+++.+++.++...++.++..++.+.. |++.+.++|.+.. .....+.+++.+++. .++.....+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT--SLLVLPEFLGLLLLL----MAVTLGSQLALTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 567778888888888888889988888874 7788888886542 111111111111111 223344556667788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000511 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 423 (1455)
Q Consensus 344 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v 423 (1455)
.++...+...+|+|.++++...+++.++|++++.++.|++.+......+..++...+.+++++++++..-...+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888899999999999999888888999999999999999987655566677777766665554444333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 424 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1455)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g--~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1455)
+++...+..++.++..+..++.++..++..+.+.|.++|++++++.+ .++.+.++..+..++-.+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 44445566777888888888999999999999999999999997433 2234444444432222222112221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhh
Q 000511 502 FFWATTPTLFSLFTFGLFALMGH---QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 578 (1455)
Q Consensus 502 ~~~~~~~~~~~~~~f~~~~~~~~---~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 578 (1455)
.+.. +...+.++.+.+.++ ..+.+.+.+...+...+..|+..+...++.+.++..+++|+.+++..++..+..
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~ 312 (547)
T PRK10522 237 NWSN----IMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP 312 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 1111 111112222222221 122222222222333467899999999999999999999999998654321100
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc
Q 000511 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~ 658 (1455)
. ..+ .+....++++|++|+|+.+ + ++|+|+||++++|+.++|+||||||||||+++|+|+++
T Consensus 313 -~--~~~----------~~~~~~i~~~~v~f~y~~~--~---~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 313 -R--PQA----------FPDWQTLELRNVTFAYQDN--G---FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred -c--ccc----------cCcCceEEEEEEEEEeCCC--C---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 000 0112469999999999732 2 35999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccC
Q 000511 659 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725 (1455)
Q Consensus 659 ~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~ 725 (1455)
|++|+|.++| +++||+|+|++|++|++|| +.+.+++...++++.+++..++.. ++|. .
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~ 445 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----I 445 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----C
Confidence 9999999876 5999999999999999999 456677788888888888776652 3321 2
Q ss_pred CCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccccCCEEEEEeC
Q 000511 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDK 804 (1455)
Q Consensus 726 ~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1455)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ .... .+++|+|+|||+++.+..||+|++|++
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l-~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL-LPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 48899999999999999999999999999999999999999888763 2212 247899999999999999999999999
Q ss_pred CeEEEe
Q 000511 805 GQVKWI 810 (1455)
Q Consensus 805 G~i~~~ 810 (1455)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999865
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=504.37 Aligned_cols=442 Identities=25% Similarity=0.349 Sum_probs=334.3
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|++-+|+. ..+|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 45789999988864 2459999999999999999999999999999999999999999999987
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCCC-------CHHHH----HHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKNY-------DPQSY----SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~-------~~~~~----~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.|+.|.|++-|+. -||.|||.+|++. |..+. +++++..++..| ......+||+|
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~Lsia 149 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIA 149 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHH
Confidence 4999999999875 5999999888653 32322 223333332211 23345589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecC
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1455)
|||-|+||||++.+++|+|||||||+|+.+..+++|+. +.....+|.++|+|||+++.+.. ||+|.||+||+.+..++
T Consensus 150 qrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999986 44435678999999999998765 99999999999875432
Q ss_pred H-HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhh
Q 000511 813 S-ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF 891 (1455)
Q Consensus 813 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~ 891 (1455)
. .++ +.++. +.
T Consensus 229 ~~~~~------------------------------------------------~~~~l----------v~---------- 240 (500)
T COG1129 229 TAAET------------------------------------------------SEDEL----------VR---------- 240 (500)
T ss_pred cccCC------------------------------------------------CHHHH----------HH----------
Confidence 1 000 00000 00
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 892 SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 971 (1455)
Q Consensus 892 ~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh 971 (1455)
++
T Consensus 241 -----------------------------~M------------------------------------------------- 242 (500)
T COG1129 241 -----------------------------LM------------------------------------------------- 242 (500)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000511 972 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL 1051 (1455)
Q Consensus 972 ~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i 1051 (1455)
.|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1052 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1131 (1455)
Q Consensus 1052 ~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~ 1131 (1455)
|++
T Consensus 245 --------r~~--------------------------------------------------------------------- 247 (500)
T COG1129 245 --------REL--------------------------------------------------------------------- 247 (500)
T ss_pred --------cch---------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCC
Q 000511 1132 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1211 (1455)
Q Consensus 1132 ~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~ 1211 (1455)
.+..++. +.
T Consensus 248 ----------------------------------------------------------------~~~~~~~-------~~ 256 (500)
T COG1129 248 ----------------------------------------------------------------EDLFPEP-------PE 256 (500)
T ss_pred ----------------------------------------------------------------hhhcccc-------cc
Confidence 0000000 00
Q ss_pred CCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hH
Q 000511 1212 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VR 1290 (1455)
Q Consensus 1212 ~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-~~ 1290 (1455)
.-+..-.++++|++.. ..++|+||++++||.+||.|=-|||+|-++.+|+|.-++.+|+|.+||.++.--+ .+
T Consensus 257 ~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 257 EGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred cCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 0011224677777642 2589999999999999999999999999999999999999999999999887655 55
Q ss_pred HHhcccEEEeCCCC---CC-CCcHHHhcCcCC--CCChH-HHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPF---LF-EGSLRDNLDPFH--MNDDL-KIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~---lf-~gTIreNLdp~~--~~~d~-ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl 1362 (1455)
..+..|+|||-|-- +| ..||++|+.... .+... -+...-++.-..++++.++..+. ....-.+||||.+|++
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV 410 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV 410 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH
Confidence 88889999999874 44 569999996431 11100 13333444445666777633322 1122337999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhH
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~e 1437 (1455)
+|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.+..+. .||||+||.+|+++..=+.++
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999875 5899999999999987 599999999999987544333
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=514.12 Aligned_cols=516 Identities=16% Similarity=0.170 Sum_probs=375.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 276 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355 (1455)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~iy 355 (1455)
.++...++.++.+++....|.+.+.++|.+.+.+.... ...++.++++.++.+++.....|...++..++|..+...++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f-~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNF-AWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888889999999999999998764322111 10111122223333444444445555566666666666666
Q ss_pred HHHhcC----CccccCCCChhHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Q 000511 356 QKCLYV----RLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAF-VSGLAITILLIP 429 (1455)
Q Consensus 356 ~K~L~l----~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~-l~g~~v~~~~~~ 429 (1455)
++.++. +...+++ +.|++.+.+++|++.+.+... .+..+...++.++.+++.++..+++.. ++.++.+++...
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 665553 3333333 579999999999999987554 456666777777777777776666643 333344455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000511 430 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP- 508 (1455)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~- 508 (1455)
+..++.+++.+..++..+..++-.+..+|.++|+++||+|+.|+.+.+++++.-++-.+...+.....+....+.....
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6777888888999999999999999999999999999999999998888877666656666555555554444432222
Q ss_pred ---HHHHHHHHHHHHHh-C----CCCCHhHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 000511 509 ---TLFSLFTFGLFALM-G----HQLDAAMVFT-C---LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH 576 (1455)
Q Consensus 509 ---~~~~~~~f~~~~~~-~----~~L~~~~~ft-~---l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 576 (1455)
..+..+..+...+. . +.+|.+..+. + ..++..+..|+..+...+..+.++.++.+||.++++.++..+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222223332222 2 5788887554 2 334677799999999999999999999999999996532111
Q ss_pred hhh-hhcCCCC-----------cccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCC
Q 000511 577 ELE-QAANSPS-----------YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGS 644 (1455)
Q Consensus 577 ~~~-~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 644 (1455)
... .....+. ....+..........++++|++|.|+.+ +++|+|+||++++||.++|+|||||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-----~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 415 SGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-----DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred cccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-----CeeeecceEEECCCCEEEEECCCCC
Confidence 000 0000000 0000000011123469999999988632 2359999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCcEEEEcC--cEEEEcCCCCCCCcCHHHHhccCC--------CCCHHHHHHHHHHhcchHHHhh
Q 000511 645 GKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISL 714 (1455)
Q Consensus 645 GKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~l~~~ti~~nI~~g~--------~~~~~~~~~v~~~~~l~~di~~ 714 (1455)
|||||+++|+|++++++|+|.+++ .++||+|+|+++++|++|||.++. ..++++..++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2456677889999999887776
Q ss_pred ccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc
Q 000511 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794 (1455)
Q Consensus 715 l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 794 (1455)
|.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. .++|+|+|||+++.++
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~-l~~---~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRL-CRE---FGITLFSVSHRKSLWK 643 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHH---cCCEEEEEeCchHHHH
Confidence 999999876 5679999999999999999999999999999999999999988876 322 3789999999999999
Q ss_pred cCCEEEEEeC
Q 000511 795 AADMVVVMDK 804 (1455)
Q Consensus 795 ~ad~i~~l~~ 804 (1455)
.||+|++|+.
T Consensus 644 ~~d~il~l~~ 653 (659)
T TIGR00954 644 YHEYLLYMDG 653 (659)
T ss_pred hCCEEEEEeC
Confidence 9999999973
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=478.39 Aligned_cols=236 Identities=34% Similarity=0.623 Sum_probs=225.8
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||+++..++...+|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1297 ~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||||+|.+|++|+++|+++++..++++++++++.+++.++++.+ ++|+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999988777889999999999999999988 999999999999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHhhC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~~g 1454 (1455)
|||||||++||+++++.+++.|++.++++|||+||||++++..||||++|++|+++|.|+|++|++++ +.|++++++++
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~-~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEK-SHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCc-HHHHHHHhhcc
Confidence 99999999999999999999999888899999999999999999999999999999999999999965 79999998765
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=456.66 Aligned_cols=467 Identities=19% Similarity=0.254 Sum_probs=355.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000511 342 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSG 420 (1455)
Q Consensus 342 ~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~i~~~lL~~~lg~a~l~g 420 (1455)
++......+.-..|.|++.|+.....+..+|.+..-+.--..-|....++ +..+....++++++..++++..||.....
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~ 88 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALT 88 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHH
Confidence 33344445666788999999887766666776655554444445554443 34455667889999999999999877665
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 421 LAITILLIPVNKWIA-NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499 (1455)
Q Consensus 421 ~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~ 499 (1455)
.++.+++..+-.+.. ..-...+++.+++-.+......+.|-+-.++|.||-|+.+..+..+..+..-+...|......+
T Consensus 89 t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 89 TLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 555555443333222 2222334444444445556777999999999999999988877766544333332222221222
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000511 500 CVFFWAT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1455)
Q Consensus 500 ~~~~~~~--~~~~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1455)
.++.... ...+....+.+...+..+.+|.+...-.-++...+..|++.+......+-+++.-.+++.+.+..+-....
T Consensus 169 Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d 248 (497)
T COG5265 169 LNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD 248 (497)
T ss_pred HHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc
Confidence 2111110 01111223333444567889999999999999999999999999999999999999999888865421111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000511 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~ 657 (1455)
. ...++. .......+.|++++|.|.++ +++|+++||++++|+.++|||++|+||||++++|.+++
T Consensus 249 ~---pda~~L-------~~~~~g~v~F~~V~F~y~~~-----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 249 A---PDAPPL-------WPVRLGAVAFINVSFAYDPR-----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred C---CCCccc-------cccccceEEEEEEEeecccc-----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 0 001110 00234679999999999754 44599999999999999999999999999999999999
Q ss_pred cCCCcEEEEcC-------------cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccc
Q 000511 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 723 (1455)
Q Consensus 658 ~~~~G~i~~~~-------------~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~i 723 (1455)
++.+|.|.++| .||.|||+..|||.|+..||.+|++ ..++...++.++.++.+.|+.+|+|++|.|
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999987 4999999999999999999999986 456778889999999999999999999999
Q ss_pred cCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEe
Q 000511 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 803 (1455)
Q Consensus 724 g~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 803 (1455)
||+|-.||||+|||||+||++.++|+|++|||+|||||.+|++.|... +.. ..+|+|.+++.||++.+-.||.|+||+
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~-l~~-~~~~rttlviahrlsti~~adeiivl~ 471 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA-LRE-VSAGRTTLVIAHRLSTIIDADEIIVLD 471 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHH-HhCCCeEEEEeehhhhccCCceEEEee
Confidence 999999999999999999999999999999999999999999988776 443 668999999999999999999999999
Q ss_pred CCeEEEecCHHHHHhccccCcc
Q 000511 804 KGQVKWIGSSADLAVSLYSGFW 825 (1455)
Q Consensus 804 ~G~i~~~g~~~~l~~~~~~~~~ 825 (1455)
+|+|+|.|+|+||++.++.+.+
T Consensus 472 ~g~i~erg~h~~ll~~~g~ya~ 493 (497)
T COG5265 472 NGRIVERGTHEELLAAGGLYAE 493 (497)
T ss_pred CCEEEecCcHHHHHHcCChHHH
Confidence 9999999999999988765543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-51 Score=468.86 Aligned_cols=442 Identities=26% Similarity=0.386 Sum_probs=343.1
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..+++++.+-.|+. ..+++||||++++||+.++.|.||+|||||++.|.|.++|++|+|.++|
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46788999988862 2459999999999999999999999999999999999999999999988
Q ss_pred ---cEEEEcCCCCCCCc-CHHHHhccCCCC------C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 ---SIAYVPQVPWILSG-TIRDNILFGKNY------D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~------~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.||.|.|++-|+.. ||.|||..|.+- | .++.++..+.++++-|.+ ++...||=|+
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~ 145 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGE 145 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcch
Confidence 49999999998866 999999998753 2 245666777777766543 3455899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCH
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 813 (1455)
||||.|-+|||++|++||||||||.|-|...+++|+. +......|+|||+|||++..+.. ||++-||++|+++..-+
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~- 223 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD- 223 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec-
Confidence 9999999999999999999999999999999999987 33335569999999999999776 99999999999753211
Q ss_pred HHHHhccccCcccccccchhhhhhhhhhcccccchhhhhhhhcccccCCCcchhhHHHHHHHhcCcchhHHHHHHhhhhh
Q 000511 814 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 893 (1455)
Q Consensus 814 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 893 (1455)
.. . +. +.+++
T Consensus 224 -~~-----------~---------------------------~~-------t~~el------------------------ 233 (501)
T COG3845 224 -PV-----------A---------------------------ET-------TEEEL------------------------ 233 (501)
T ss_pred -CC-----------C---------------------------CC-------CHHHH------------------------
Confidence 00 0 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973 (1455)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 973 (1455)
.- ++
T Consensus 234 ---------a~-lM------------------------------------------------------------------ 237 (501)
T COG3845 234 ---------AE-LM------------------------------------------------------------------ 237 (501)
T ss_pred ---------HH-Hh------------------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1053 (1455)
Q Consensus 974 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~ 1053 (1455)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1133 (1455)
Q Consensus 1054 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1133 (1455)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCC
Q 000511 1134 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213 (1455)
Q Consensus 1134 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~w 1213 (1455)
+ + ... . .+.+ .++.-
T Consensus 238 -------v-G--~~v--~----------------------------------------------~~~~-------~~~~~ 252 (501)
T COG3845 238 -------V-G--REV--V----------------------------------------------LRVV-------KPPST 252 (501)
T ss_pred -------c-C--Ccc--c----------------------------------------------cccc-------cCCCC
Confidence 0 0 000 0 0000 01111
Q ss_pred CCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeC-CCCChHHH
Q 000511 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDL 1292 (1455)
Q Consensus 1214 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di-~~i~~~~l 1292 (1455)
|..-.++++|++..-+.+ -+.+++|||+|++||.+||.|-.|-|-+-|+.+|.|+..|.+|+|.++|.|+ ...+....
T Consensus 253 pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 334468999999865432 3689999999999999999999999999999999999999999999999997 66677777
Q ss_pred hc-ccEEEeCCCC----CCCCcHHHhcCcCCCCCh-----H-HHHHHHHHhcHHHHHHhC-----CCchhhhcCCCCCCh
Q 000511 1293 RG-RFAVVPQSPF----LFEGSLRDNLDPFHMNDD-----L-KIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSV 1356 (1455)
Q Consensus 1293 R~-~i~~VpQdp~----lf~gTIreNLdp~~~~~d-----~-ei~~aL~~~~l~~~i~~l-----gLdt~v~e~G~~LSg 1356 (1455)
|+ .+++||.|.+ ..+-|+.||+-+.....+ - -=|++.++ ...+.++.+ +.++++ .+|||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-~a~~li~~fdVr~~~~~~~a----~~LSG 406 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPA----RSLSG 406 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-HHHHHHHHcCccCCCCCcch----hhcCC
Confidence 65 5999999995 556799999854322111 0 00112211 123445544 333332 47999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1357 GQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
|+.|++-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-+|+.+.. ||||.||.+|+++...+
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999999887764 69999999999999876 99999999999998887
Q ss_pred hhH
Q 000511 1435 PQT 1437 (1455)
Q Consensus 1435 p~e 1437 (1455)
|++
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 776
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=460.31 Aligned_cols=229 Identities=27% Similarity=0.390 Sum_probs=204.7
Q ss_pred CCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCC
Q 000511 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNII 1285 (1455)
Q Consensus 1211 ~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~ 1285 (1455)
.+||..+.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4699999999999999997655679999999999999999999999999999999999997 57999999999997
Q ss_pred --CCChHHHhcccEEEeCCCCCCCCcHHHhcCcC---CCCChHHH-----HHHHHHhcHHHHHHhCCCchhhhcCCCCCC
Q 000511 1286 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKI-----WSVLEKCHVKEEVEAVGLETFVKESGISFS 1355 (1455)
Q Consensus 1286 --~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~---~~~~d~ei-----~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1355 (1455)
.++...+|++++||||+|++|++|+++|++++ ...++++. .++++.+++++ ++++.+++.|.+||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~l~~~~~~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-----EVKDDLDKAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-----hhhhhhhCCcccCC
Confidence 45667899999999999999999999999843 22444444 34455555433 45678899999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1356 gGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998889999999999999998 99999999999999999
Q ss_pred hhHHhccCCc
Q 000511 1435 PQTLLQDECS 1444 (1455)
Q Consensus 1435 p~eLl~~~~s 1444 (1455)
|+++..++..
T Consensus 308 ~~~l~~~~~~ 317 (329)
T PRK14257 308 TKTIFIHPKN 317 (329)
T ss_pred HHHHhcCCCc
Confidence 9999987653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=388.48 Aligned_cols=220 Identities=28% Similarity=0.434 Sum_probs=189.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC-CCChHHHhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~-~i~~~~lR~~i 1296 (1455)
.|+++||+.+|... .||||||++|++||++.||||||||||||+++|.++-+|++|+|.|||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 6999999999999999999999999999999999999999999999998774 33789999999
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
|+|+|+.-||+- |+-||+.... ..+.+|-.+ + ..+.++..||......-...|||||+||+||||||.-+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~---~--A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE---K--ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHH---H--HHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 999999999986 9999986432 122222111 1 11233334666666667778999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCc
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1444 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s 1444 (1455)
|+|+++|||||+||++.-..+.+++++.. .|.|.|+|||.+...++ +|||+.||+|+|+|.|+|+++..++.+
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 99999999999999999999999998875 58899999999999988 799999999999999999999998764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=401.29 Aligned_cols=220 Identities=29% Similarity=0.442 Sum_probs=190.7
Q ss_pred EEEEEEEEEecCC---CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC---hHHH
Q 000511 1219 IEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDL 1292 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---~~~l 1292 (1455)
|+++||++.|... ...+|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999763 346999999999999999999999999999999999999999999999998887766 5566
Q ss_pred hcccEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1293 RGRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
|++||+|+|++-|++ -||.+|+.+-- ..+.+|+.+ ...+.++-.||....+.-..+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~-----RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ-----RVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHH-----HHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 789999999999998 69999996421 133444332 122333333777777788889999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
..+|+||+.|||||+||++|.+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+..++..+|.
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 99999999999999999999999999987653 38899999999999987 99999999999999999999999885
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=379.04 Aligned_cols=220 Identities=30% Similarity=0.430 Sum_probs=200.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCC-----ceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~-----G~I~IdG~di~~--i~~ 1289 (1455)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|-|+.+..+ |+|.+||.||-+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 469999999999999999999999999999999999999876 999999999975 689
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCCC----C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~~----~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
-.+|+++|+|.|.|--|+.||+||+.++-. . -|+-+.++|+++.||+.++. .+.+.+..|||||+|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCCChhHHHHH
Confidence 999999999999999999999999987522 1 24557889999999998864 45667778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
||||||.-+|+||+||||||+||+.+...|.+.|.+..++-||++|||.+.-... +|+...+-.|+++|+|+-+++..+
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcC
Confidence 9999999999999999999999999999999999999899999999999997665 799999999999999999999988
Q ss_pred CC
Q 000511 1442 EC 1443 (1455)
Q Consensus 1442 ~~ 1443 (1455)
|.
T Consensus 239 P~ 240 (253)
T COG1117 239 PK 240 (253)
T ss_pred cc
Confidence 74
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=408.84 Aligned_cols=238 Identities=44% Similarity=0.744 Sum_probs=221.6
Q ss_pred CCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhc
Q 000511 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294 (1455)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~ 1294 (1455)
..|.|+++|++++|+....++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754356999999999999999999999999999999999999999999999999999999989999
Q ss_pred ccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.++.+ |+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876544556788889999999998888 9999999999999999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHh
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~ 1452 (1455)
++|||||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++.+.+++.|+.++..
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 99999999999999999999999988767899999999999999999999999999999999999998877889988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=415.61 Aligned_cols=196 Identities=24% Similarity=0.326 Sum_probs=158.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|.|+||+|+|+++ +..+++++|.|.++++||+|||+|+|||||++++.+.+.|..|.|.-.-. -+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 59999999999765 48999999999999999999999999999999999999999999854322 2233
Q ss_pred EEeCCC---CCCCCcHHHhcCcC-C-CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSP---FLFEGSLRDNLDPF-H-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp---~lf~gTIreNLdp~-~-~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+--|.- .-++-|.-+|+.|- . ....+++...|.++||.... .+.++ .+||+|||.|+++||.++++|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~----q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA----QVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc----cccch----hhcccccchhHHHHHHHhcCC
Confidence 334432 34566777776542 2 24556777788888775221 22233 379999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEe-CCh
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQ-GNP 1435 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~-G~p 1435 (1455)
.||+|||||++||.+|-....++|.++ ..+||+|+|+...|.. +++|++.+||++... |..
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999764 4589999999999987 799999999998764 443
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=378.81 Aligned_cols=223 Identities=31% Similarity=0.462 Sum_probs=193.8
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|-|.--||+- ||.||+..-. ..+.+++.+- .++.++..|||. ....-...|||||+||+.+||||..+|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 9999999986 9999986322 2244444322 233444447875 345557789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhccCCcHHHH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~ 1448 (1455)
+|++||||.++||+-|...+|+-+.+.- -++|+|+|||+++... -+|||.||++|+|+.+|+|++++++|...|-+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 9999999999999999999999886643 3899999999999765 58999999999999999999999999866643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=396.70 Aligned_cols=233 Identities=35% Similarity=0.569 Sum_probs=212.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57899999997544579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+||++.+|+.|+++|+..... .+.+++.++++..++.+.++.+ |+++..+..+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999986543 3455677778888888888888 8888888888999999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHh
Q 000511 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~ 1452 (1455)
||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|++++++++. +.|+.+++.
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~~~~ 236 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAYLYQL 236 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc-ChHHHHHhc
Confidence 9999999999999999999999887789999999999999889999999999999999999999864 578877653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=414.18 Aligned_cols=262 Identities=22% Similarity=0.300 Sum_probs=217.0
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEE
Q 000511 524 HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 603 (1455)
Q Consensus 524 ~~L~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 603 (1455)
+.++++.+|+++++++.+..|+..+|..... .+|+++|+..++.+...... . .+....++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~i~ 82 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--D-----------FNHANVFE 82 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--C-----------CCcCceEE
Confidence 4789999999999999999999887765433 56999998766532210000 0 12345799
Q ss_pred EEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC----------
Q 000511 604 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---------- 668 (1455)
Q Consensus 604 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~---------- 668 (1455)
++|+++.|... . +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 83 ~~nls~~y~~~-~---~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 83 IRNFNFWYMNR-T---KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEeeEEEecCC-C---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 99999999642 1 235999999999999999999999999999999999996 5799987643
Q ss_pred -----cEEEEcCCCCCCCcCHHHHhccCCCC---C-HH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 -----SIAYVPQVPWILSGTIRDNILFGKNY---D-PQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 -----~i~y~~Q~p~l~~~ti~~nI~~g~~~---~-~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.++||||+||++++|++|||.|+..+ + ++ .|.++++.|+|..+++ +.++++|.+||||||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqk 231 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQ 231 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHH
Confidence 59999999999999999999987432 2 22 2677888888866553 678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 814 (1455)
|||+||||++++|+|+||||||+|||+++.+++.+. +.. +.+++|+|+|||+++++.. ||+|++|++|+|++.|+++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~-l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILE-LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999886554 554 5567899999999999887 9999999999999999999
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 9854
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=389.32 Aligned_cols=219 Identities=53% Similarity=0.912 Sum_probs=205.7
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
|.++++|++++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445799999999999999999999999999999999999999999999999999988988999999
Q ss_pred EEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1297 ~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+|+||+|.+|++|++||++++....++++.++++..++.+.+..+ |+++.+++.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999987666777889999999999998876 999999888999999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCCh
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p 1435 (1455)
+||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=396.48 Aligned_cols=192 Identities=21% Similarity=0.297 Sum_probs=161.4
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcc
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1295 (1455)
...+++.+|+|.|.|+.++.+++++++++.-+++++||++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999999877899999999999999999999999999999999999999999988865 789
Q ss_pred cEEEeCCCCCC-CCcHH-----HhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCC-CCCChhHHHHHHHHHHH
Q 000511 1296 FAVVPQSPFLF-EGSLR-----DNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1296 i~~VpQdp~lf-~gTIr-----eNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G-~~LSgGQrQrl~LARAl 1368 (1455)
|+|-.|.-+=| +-.+- +-..|+ .+++|+.+.|... |++..+...+ ..||||||-|+++|-..
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG--~~~ee~r~hl~~~---------Gl~g~la~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPG--KTEEEIRRHLGSF---------GLSGELALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCC--CCHHHHHHHHHhc---------CCCchhhhccccccCCcchhHHHHHHHh
Confidence 99999976522 21111 111222 2778887776654 5666655444 46999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEE
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVE 1431 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1431 (1455)
..+|.+|||||||+.||.++-..+-++|+. |.| -||+|+|+.+.+.. |+.++|.++|+|..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999976 444 79999999999987 99999999999975
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=379.21 Aligned_cols=207 Identities=46% Similarity=0.864 Sum_probs=187.6
Q ss_pred CCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH
Q 000511 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL 1292 (1455)
Q Consensus 1213 wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l 1292 (1455)
||..+.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543479999999999999999999999999999999999999999999999999998888889
Q ss_pred hcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1293 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|++++|+||+|.+|++|+++|+..+...+++++.++++ +++....||+||+||++||||++++|
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998665444444433332 24556789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCCh
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p 1435 (1455)
+++||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+|
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999987778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=400.44 Aligned_cols=223 Identities=24% Similarity=0.383 Sum_probs=190.7
Q ss_pred CCccEEEEEEEEEecCC---CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC----
Q 000511 1215 FQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---- 1287 (1455)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i---- 1287 (1455)
....|+++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 34469999999999743 23699999999999999999999999999999999999999999999999998653
Q ss_pred ------------ChHHHhcccEEEeCCC--CCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc-hhhhc
Q 000511 1288 ------------PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKE 1349 (1455)
Q Consensus 1288 ------------~~~~lR~~i~~VpQdp--~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e 1349 (1455)
+...+|++++||+|+| .+|++|++||+.++.. .++++. .+++ .+.++.+|++ ...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~---~~~~--~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA---KKLA--KFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHH---HHHH--HHHHHHcCCChhHhcC
Confidence 3567899999999998 6899999999965421 223322 2222 3455666886 56788
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCC
Q 000511 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHG 1427 (1455)
Q Consensus 1350 ~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G 1427 (1455)
.+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998753 5899999999999875 59999999999
Q ss_pred eEEEeCChhHHhccC
Q 000511 1428 HLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1428 ~ive~G~p~eLl~~~ 1442 (1455)
++++.|+|+++.+++
T Consensus 253 ~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 253 KILKTGTPYEIFTDQ 267 (320)
T ss_pred EEEEeCCHHHHhcCH
Confidence 999999999887643
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=401.35 Aligned_cols=223 Identities=25% Similarity=0.388 Sum_probs=188.3
Q ss_pred EEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---Hh
Q 000511 1219 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~---lR 1293 (1455)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cccEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1294 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
++|++|||++.+|+ .|++||+.+.. ..+.+++.+ ...+.++.+|++.........||||||||++|||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~ 156 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999996 69999996421 122222211 1123333345555555666789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
.+|+|||||||||+||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||||++|++|+|+|.|++++++.++...+
T Consensus 157 ~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~ 236 (343)
T TIGR02314 157 SNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPL 236 (343)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHH
Confidence 99999999999999999999999999988753 7899999999999976 99999999999999999999987765434
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=384.84 Aligned_cols=229 Identities=34% Similarity=0.582 Sum_probs=208.2
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+....++++|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+||+|.+|+.|++||+..+.. ...+++.+.++..++.+.++.+ |+++.++....+||+|||||++||||++++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986543 3445666777888888888888 8888888888899999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHH
Q 000511 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~ 1448 (1455)
||||||++||..+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++.++. +.|+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG-GVYAK 232 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC-cchhh
Confidence 9999999999999999999999887889999999999999999999999999999999999998764 45554
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=379.20 Aligned_cols=213 Identities=29% Similarity=0.449 Sum_probs=187.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|+ .+++|+|+||+|++||.++|+||||||||||+++|.|+++|.+|+|.+||.|+.+++..++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-CCCcHHHhcCcCC--------CCC--hH-HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000511 1298 VVPQSPFL-FEGSLRDNLDPFH--------MND--DL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1298 ~VpQdp~l-f~gTIreNLdp~~--------~~~--d~-ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1455)
||||++.. |.-||+|-+..+. ..+ |+ .+.++|+.+++.++.+ ..-..||||||||+.||
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~---------r~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD---------RPVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc---------CcccccChhHHHHHHHH
Confidence 99999754 5559998875442 112 33 4667788887766543 22335999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhH-hhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTV-LNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||.++|+||+||||||+||....-.+++.+++.. +++|||+|.|+++.. +.||++++|++|+++..|+|+|.+..
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999999999999998875 479999999999865 55899999999999999999999874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=380.83 Aligned_cols=225 Identities=40% Similarity=0.652 Sum_probs=207.0
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
|.|+++|++++|+. ..++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 23699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1297 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1297 ~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+|+||++.+|++|++||+..+.. ..++++.++++.+++.+.++.+ |+++.++.....||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999976543 3456777888889999888887 89999988888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
+|||||||++||..+.+.+.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++.++.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999998876789999999999999889999999999999999999887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=363.80 Aligned_cols=226 Identities=29% Similarity=0.458 Sum_probs=186.5
Q ss_pred cEEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC-ChHHHhc
Q 000511 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-PVRDLRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i-~~~~lR~ 1294 (1455)
.++++|+++.|+... .++|+||||+|.+||.+||+|+||||||||.++|.|+.+|++|+|.+||.+.... +.+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997542 2599999999999999999999999999999999999999999999999776543 3446788
Q ss_pred ccEEEeCCCC--CCC-CcHHHhc----CcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000511 1295 RFAVVPQSPF--LFE-GSLRDNL----DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1455)
Q Consensus 1295 ~i~~VpQdp~--lf~-gTIreNL----dp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1455)
.+.+|+|||. |=+ -||++-| .+.+. ...++++++|+.+||.+. ........||||||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~--------~l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS--------FLDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH--------HHhcCchhcChhHHHHHHHHH
Confidence 8999999996 222 2666555 33221 123457777777766433 234556679999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1367 AlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
||.-+|++||+|||||+||.-..+.|.+.+.+..+ +-|.|+|||++..+.. ||||+||++|+++|.++-+++...+.
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~ 234 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPS 234 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCc
Confidence 99999999999999999999999999999987765 4599999999999987 99999999999999999999998755
Q ss_pred cHHHHHHH
Q 000511 1444 SVFSSFVR 1451 (1455)
Q Consensus 1444 s~f~~l~~ 1451 (1455)
..|.+.+.
T Consensus 235 h~ytr~Ll 242 (252)
T COG1124 235 HPYTRELL 242 (252)
T ss_pred cHHHHHHH
Confidence 56655443
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=380.60 Aligned_cols=232 Identities=37% Similarity=0.639 Sum_probs=211.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+.+ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 469999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EeCCCCCCCCcHHHhcCcCC-CCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~-~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+ |+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23566778888888998888887 8999998888899999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHHh
Q 000511 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~~ 1452 (1455)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|+++++.++ .+.|+.++.+
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 999999999999999999999887668899999999999999999999999999999999999875 4577776654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=421.66 Aligned_cols=199 Identities=25% Similarity=0.341 Sum_probs=162.8
Q ss_pred CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC--CCCceEEECCEeCCCCChHHHhcccEEEeCCCCCC-C
Q 000511 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF-E 1307 (1455)
Q Consensus 1231 ~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf-~ 1307 (1455)
+....|+|||=-++||-..|++|.||||||||++.|.+=.. ..+|+|+|||.+..+ +..++++|||.|++.-. .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 44568999999999999999999999999999999997643 247999999998765 78899999999988644 4
Q ss_pred CcHHHhcCcC------CCCChHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC-CEEE
Q 000511 1308 GSLRDNLDPF------HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS-KVLC 1376 (1455)
Q Consensus 1308 gTIreNLdp~------~~~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~-~ILl 1376 (1455)
-||||-|.+. .+.+++| +.++++-.+|.+.- |..||.-|..||..||.|+.||=-|..|| .||.
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-----daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-----DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-----hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 5999998542 2233333 33444444444332 45677777889999999999999999999 8999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh--HhhhCEEEEEeC-CeEEEeCChhH
Q 000511 1377 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GHLVEQGNPQT 1437 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~t--i~~~DrI~vl~~-G~ive~G~p~e 1437 (1455)
||||||+||+++...|.+.+|+.. .|+||++.-|.++. .+.+||++.|++ |+.|-+|++.+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999999999999999875 69999999999885 356899999964 89998887643
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.37 Aligned_cols=210 Identities=29% Similarity=0.457 Sum_probs=184.7
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|... +||+||||+|++||.+||+||||||||||+++++|+++|.+|+|.++|.+++.... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 58999999999754 59999999999999999999999999999999999999999999999998776543 57899
Q ss_pred EEeCCC---CCCCCcHHHhcCcCCC-----------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000511 1298 VVPQSP---FLFEGSLRDNLDPFHM-----------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1298 ~VpQdp---~lf~gTIreNLdp~~~-----------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1455)
||||.. .-|+-||+|-+..+.. .+.+++.+||+++|++++. |-+++ .|||||+||+.
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----~r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----DRQIG----ELSGGQKQRVL 149 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----CCccc----ccCcHHHHHHH
Confidence 999955 3588999999866421 1247889999999998764 33444 59999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||||+++|++|+|||||+++|+.++..+.+.|++..+ ||||++|+|+++.+.. +|+|+.|. ++++..|+|++.+..
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 99999999999999999999999999999999988764 9999999999999876 89999996 678899999999875
Q ss_pred C
Q 000511 1442 E 1442 (1455)
Q Consensus 1442 ~ 1442 (1455)
+
T Consensus 229 ~ 229 (254)
T COG1121 229 E 229 (254)
T ss_pred H
Confidence 4
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=385.43 Aligned_cols=221 Identities=29% Similarity=0.458 Sum_probs=192.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++||+.+|++.. +|+|+||+|+.||.++++|||||||||++++|.|+.+|++|+|.|||.|+.++++++ +.|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997543 999999999999999999999999999999999999999999999999999999986 7899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCCC---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+|+|+..||+. ||++|+.+.-.. ..+|+.+.. .+..+.++++..+......||||||||+||||||.++|+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV-----~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRV-----KEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHH-----HHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 99999999987 999999865322 334443322 223334477777778888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
+++||||.|+||++....+..-|++..+ +.|+|.|||+....+. +|||+||++|+|.+.|+|.|+.+++...|-
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fV 230 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhh
Confidence 9999999999999999998888877543 6899999999888775 899999999999999999999999887663
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=379.15 Aligned_cols=231 Identities=37% Similarity=0.611 Sum_probs=207.3
Q ss_pred EEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1219 IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
++++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999643 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
|+||+|.+|+.|++||+..... ...+++.+.++..++.+.+..+ |+++.++....+||||||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999976532 3455677778888888888877 888888888889999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
|||||||++||+.+.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|+++++.+.. +..+.++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~~~ 235 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-GVYAKLV 235 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC-hhHHHHh
Confidence 99999999999999999999998876789999999999999899999999999999999999998754 4555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=355.80 Aligned_cols=229 Identities=28% Similarity=0.451 Sum_probs=196.8
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HH
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1292 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~l 1292 (1455)
.-.|++++|+++|.. ..|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 347999999999964 4699999999999999999999999999999999999999999999999999998864 56
Q ss_pred hcccEEEeCCCCCCCC-cHHHhcCc-CCCC---ChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHH
Q 000511 1293 RGRFAVVPQSPFLFEG-SLRDNLDP-FHMN---DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLAR 1366 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf~g-TIreNLdp-~~~~---~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LAR 1366 (1455)
|+++|++.|+.-||+. ||+||+.+ ..++ +++++.+ +-. ..++..||... ...-.+.||||.+.|.+|||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~-lv~----~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-LVL----MKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHH-HHH----HHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 8999999999999987 99999964 3333 3444433 111 12233377777 44557789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1367 AlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
|+.-+|+|+++|||||+||+-+...+-+.|++..+ +.|+|+|||+++++.. ||||+++.+|+|+..|+|+|+.+.++
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~ 238 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999888877543 8999999999999987 69999999999999999999999888
Q ss_pred cHHHHHHH
Q 000511 1444 SVFSSFVR 1451 (1455)
Q Consensus 1444 s~f~~l~~ 1451 (1455)
-..++.++
T Consensus 239 P~v~qf~~ 246 (263)
T COG1127 239 PWVRQFFN 246 (263)
T ss_pred HHHHHHhc
Confidence 77777664
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=355.15 Aligned_cols=200 Identities=28% Similarity=0.365 Sum_probs=171.8
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.|+++|++-+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+-++++|+|.++|
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 3678888887753 2359999999999999999999999999999999999999999999998
Q ss_pred --cEEEEcCCCCCCCc-CHHHHhccCC----CCC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVPWILSG-TIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.+|+|+|+..||.- ||.|||..+. ..+ +++-.+.++..+|.+-.+..| ..||||||||
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQR 144 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQR 144 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHH
Confidence 47899999999975 9999999863 122 234556677777776666555 4899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
|||||||.-+|+++|+|||||||||+....+++- +......|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~v-m~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDV-MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH-HHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999999999999999999888875 33324568899999999999987 999999999999999999988
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
-.
T Consensus 224 f~ 225 (240)
T COG1126 224 FD 225 (240)
T ss_pred hc
Confidence 54
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=377.93 Aligned_cols=226 Identities=31% Similarity=0.450 Sum_probs=192.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1298 ~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARAlLr~~~ILl 1376 (1455)
|+||+|.+|+.|+++|+.......+.+ ...+.+.++.+|++ .........||||||||++||||++++|++||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 154 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLL 154 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcH------HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999997542221111 01123344445665 34556677899999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHH
Q 000511 1377 LDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~ 1451 (1455)
|||||++||.++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++..++...+.+.+.
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 232 (241)
T PRK14250 155 LDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLFI 232 (241)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHHH
Confidence 999999999999999999998764 37899999999999875 8999999999999999999998766545655443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=371.31 Aligned_cols=215 Identities=31% Similarity=0.497 Sum_probs=192.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC-CCChHHHhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~-~i~~~~lR~~i 1296 (1455)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 58999999999877 78999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEeCCC--CCCCCcHHHhcCcCCC---CChHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1297 AVVPQSP--FLFEGSLRDNLDPFHM---NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1297 ~~VpQdp--~lf~gTIreNLdp~~~---~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
|+|.|+| .+|..||.+.+.++.. .+.+| +.++|+.++ +.........+||||||||+|||.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vg---------l~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVG---------LEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcC---------chhhccCCccccCCcceeeHHhhHH
Confidence 9999999 7999999999987643 23434 344444444 4444556677899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
|..+|+|||||||||+||+...+.+.+.+++..+ ++|+|+|||+++.+.. |||++||++|+++.+|+|+++.++.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999999999999998754 4799999999999988 9999999999999999999998864
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=372.37 Aligned_cols=217 Identities=37% Similarity=0.540 Sum_probs=197.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
|.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1297 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1297 ~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+|+||+|.+|+.|++||+..... .+++++.+.++..++.+.++.. |+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999976432 3455677888999998888776 89998888888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeC
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1433 (1455)
+|||||||++||.++.+.+.+.|++..+++|||++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988889999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=376.90 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=184.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~---~~lR~~ 1295 (1455)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999963 469999999999999999999999999999999999999999999999999987764 567889
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
++|+||++.+|++ |++||+.... ..+.++..+. ..+.++.+|++.........||||||||++||||+++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999986 9999996531 1222222111 1233444466555555666899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
+|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++.+..
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 228 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD 228 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCC
Confidence 9999999999999999999999999988643 7899999999999876 8999999999999999999998643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=392.56 Aligned_cols=224 Identities=27% Similarity=0.428 Sum_probs=190.8
Q ss_pred EEEEEEEEEecC--CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---Hh
Q 000511 1219 IEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~---lR 1293 (1455)
|+++|++++|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2347999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cccEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1294 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
++++||||++.+|+ .|++||+.... ..++++..+ .+.+.++.+|++........+||||||||++|||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999886 69999996531 122222211 2234455557776666777789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
++|+||+|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+++++..++...+
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999999999999999999999999988643 7899999999999876 99999999999999999999987654434
Q ss_pred H
Q 000511 1447 S 1447 (1455)
Q Consensus 1447 ~ 1447 (1455)
.
T Consensus 237 ~ 237 (343)
T PRK11153 237 T 237 (343)
T ss_pred H
Confidence 3
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=374.21 Aligned_cols=213 Identities=32% Similarity=0.464 Sum_probs=180.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCC-----CCCCceEEECCEeCCCCC--hHH
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTP--VRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~-----~~~~G~I~IdG~di~~i~--~~~ 1291 (1455)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998776 567
Q ss_pred HhcccEEEeCCCCCCCCcHHHhcCcCCC----CChHHHHHHHHHhcHHHHHHhCCCchhhhcC--CCCCChhHHHHHHHH
Q 000511 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKES--GISFSVGQRQLICLA 1365 (1455)
Q Consensus 1292 lR~~i~~VpQdp~lf~gTIreNLdp~~~----~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~--G~~LSgGQrQrl~LA 1365 (1455)
+|++++|+||++.+|+.|++||+.+... ..+++.. ..+.+.++.+|++...... +.+||||||||++||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD-----ERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHH-----HHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 7889999999999998899999975321 1111111 1112333444555444444 468999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHH
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eL 1438 (1455)
||++++|++|||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999987655899999999998875 899999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=374.23 Aligned_cols=219 Identities=26% Similarity=0.430 Sum_probs=187.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHHhc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~~~~lR~ 1294 (1455)
.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ccEEEeCCCCCCCCcHHHhcCcCCCC---------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000511 1295 RFAVVPQSPFLFEGSLRDNLDPFHMN---------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~gTIreNLdp~~~~---------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1455)
+++|+||+|.+|+.|++||+.++... .++++.++++.+++.+.+ +....+.+.+||+|||||++||
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-----KDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-----hHHhcCCcccCCHHHHHHHHHH
Confidence 99999999999999999999754211 111233444444432221 1234566778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
||++++|+++||||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999999999999999999999999999999887678999999999998865 89999999999999999999987553
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=380.80 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=187.7
Q ss_pred cEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1218 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
.++++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCC--CCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp~--lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||+|. ++..|+++|+.+... .+.++..+ ...+.++.+|++........+||||||||++||||++++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~ 158 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE-----RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMR 158 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 99999983 567799999975421 22222111 112333344565556666678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
|+||||||||++||+.+.+.+.+.|++..+ ++|||+|||+++.+..||||++|++|++++.|+++++.+++
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRG 231 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcCh
Confidence 999999999999999999999999987643 79999999999999889999999999999999999987653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=357.86 Aligned_cols=208 Identities=30% Similarity=0.421 Sum_probs=173.1
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHHh
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~---~~lR 1293 (1455)
++++||+..|..+. ..+|+++||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++. ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996443 368999999999999999999999999999999999999999999999999999984 3444
Q ss_pred -cccEEEeCCCCCCCC-cHHHhcCc---CCCCChHHHHHHHHHhcHHHHHHhCCCchhhh-cCCCCCChhHHHHHHHHHH
Q 000511 1294 -GRFAVVPQSPFLFEG-SLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1294 -~~i~~VpQdp~lf~g-TIreNLdp---~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~-e~G~~LSgGQrQrl~LARA 1367 (1455)
++||+|+|+..|++. |++||+.. .......+..++ ..+..+.+||..... .....||||||||+|||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 579999999999876 99999863 221121111111 122233336664444 5567899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEEE
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVE 1431 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive 1431 (1455)
|+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+.+....|||++.|.+|++.+
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999998874 3789999999999999999999999999543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=350.47 Aligned_cols=221 Identities=28% Similarity=0.412 Sum_probs=189.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC---hHHHhc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---~~~lR~ 1294 (1455)
.|+++||+.+|+ +...+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 589999999997 4567999999999999999999999999999999999999999999999999998887 667788
Q ss_pred ccEEEeCCCCCCCC-cHHHhcCcC------------CCCChH---HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhH
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPF------------HMNDDL---KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1358 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~g-TIreNLdp~------------~~~~d~---ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1358 (1455)
++|+|+|++-|-+- |+.+|+..+ +-++.+ +..++|+++|+.+. .-....+|||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~---------A~qra~~LSGGQ 152 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK---------AYQRASTLSGGQ 152 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH---------HHHHhccCCcch
Confidence 99999999998865 999997432 233333 34556666666543 233455799999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
+||++|||||.++|+|++=|||+|+||+.+.+.|++.|++.. .|.|||+.-|.++..++ ||||+-|++|+|+-.|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998764 58999999999999886 799999999999999999
Q ss_pred hHHhccCCcHHHHHHH
Q 000511 1436 QTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1436 ~eLl~~~~s~f~~l~~ 1451 (1455)
+||-+ ..+...|.
T Consensus 233 ~el~~---~~~~~iYg 245 (258)
T COG3638 233 SELTD---EALDEIYG 245 (258)
T ss_pred hhhhH---HHHHHHhc
Confidence 99643 24555543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=382.26 Aligned_cols=218 Identities=30% Similarity=0.509 Sum_probs=184.9
Q ss_pred EEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC--hHHHh
Q 000511 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--~~~lR 1293 (1455)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997432 36999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cccEEEeCCC--CCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc--hhhhcCCCCCChhHHHHHHHHH
Q 000511 1294 GRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGISFSVGQRQLICLAR 1366 (1455)
Q Consensus 1294 ~~i~~VpQdp--~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd--t~v~e~G~~LSgGQrQrl~LAR 1366 (1455)
++++||||+| .+|+.|+++|+.+... .++++..+. ..+.++.+|++ ...+.....||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 9999999998 5788999999975321 233322211 12233344665 4456667789999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1367 AlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|++++++++
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999987643 789999999999986 4999999999999999999998763
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=388.51 Aligned_cols=222 Identities=29% Similarity=0.434 Sum_probs=189.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..|+++|++++|.. .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999963 4699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
++|+|++.+|+. |++||+.+.-. .+++++.+. +.+.++.+|++.........||||||||++|||||+++|
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P 155 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKP 155 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999976 99999975421 222222211 122333335555555666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
+||+||||||+||..+.+.+++.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++.+++...|.
T Consensus 156 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~ 233 (351)
T PRK11432 156 KVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233 (351)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHH
Confidence 99999999999999999999999987654 7899999999999865 899999999999999999999998876553
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=374.77 Aligned_cols=222 Identities=26% Similarity=0.442 Sum_probs=187.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i~ 1297 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988876654 57799
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCCC-ChHHH-------HHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHMN-DDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~~-~d~ei-------~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
|+||++.+|++ |++||+...... ....+ ...-......+.++.+|++...+.....||||||||++||||+
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999998643211 00000 0000111234556666887777777788999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
+++|++|||||||++||..+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 234 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccCC
Confidence 99999999999999999999999999998764 68899999999999876 8999999999999999999997643
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=390.23 Aligned_cols=222 Identities=23% Similarity=0.352 Sum_probs=188.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+.+ .++|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++++
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 48999999999422 4699999999999999999999999999999999999999999999999999988765 47899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
||||++.+|+. |++||+.+... .+..+..+ ...+.++.+|++...+....+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975422 22222211 12233444466655666667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|.
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 9999999999999999999999987653 7899999999998765 899999999999999999999988765554
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.45 Aligned_cols=214 Identities=27% Similarity=0.394 Sum_probs=181.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++||+++|+.+..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999653356999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EeCCCCCC-CCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf-~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||+|.+| ..|+++|+.... ....++..+ ...+.++.+|++........+||+|||||++||||++++|++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998 579999986431 112111111 123344444665555555668999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHH
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eL 1438 (1455)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999987777999999999999876 899999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=388.75 Aligned_cols=221 Identities=28% Similarity=0.421 Sum_probs=192.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4699999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
||||++.+|+ .|++||+.+... .+..+.. ....+.++.+||+........+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 599999975421 1222221 123445555677777777888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...|-
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFV 231 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999999999999999999999987643 7899999999998765 899999999999999999999998876663
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=375.93 Aligned_cols=221 Identities=28% Similarity=0.405 Sum_probs=188.1
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~ 1288 (1455)
++.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999964 369999999999999999999999999999999999986 589999999999863 45
Q ss_pred hHHHhcccEEEeCCCCCCCCcHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
...+|++++|+||+|.+|+.|+++|+.... ..+. ++++++++.+++.+. +....++...+|||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-----VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-----hHHHHhcCCCCCCHHHHH
Confidence 667899999999999999999999997531 1222 234444444443221 124456667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
|++||||++++|+||||||||++||.++.+.+.+.|++..++.|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 8999999999999999999998
Q ss_pred ccCC
Q 000511 1440 QDEC 1443 (1455)
Q Consensus 1440 ~~~~ 1443 (1455)
+.+.
T Consensus 244 ~~~~ 247 (260)
T PRK10744 244 TKPA 247 (260)
T ss_pred hCCC
Confidence 7543
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=373.33 Aligned_cols=226 Identities=30% Similarity=0.459 Sum_probs=190.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+||+|.+|+ .|++||+..... .+.++. .....+.++.+|++. .....+.+||||||||++||||++++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999986 599999964321 111111 112344555567764 556677889999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH-HH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF-SS 1448 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f-~~ 1448 (1455)
++|+|||||++||.++.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|+++++.+++...+ +.
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 234 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAE 234 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCCChHHHH
Confidence 9999999999999999999999998864 37999999999998765 89999999999999999999976544333 44
Q ss_pred HH
Q 000511 1449 FV 1450 (1455)
Q Consensus 1449 l~ 1450 (1455)
+.
T Consensus 235 ~~ 236 (242)
T cd03295 235 FV 236 (242)
T ss_pred Hh
Confidence 43
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=380.99 Aligned_cols=219 Identities=27% Similarity=0.428 Sum_probs=187.2
Q ss_pred cEEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChH
Q 000511 1218 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~~~ 1290 (1455)
.|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999996432 3699999999999999999999999999999999999999999999999999754 346
Q ss_pred HHhcccEEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000511 1291 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1364 (1455)
.+|++++||||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||++ ..+..+.+||||||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 7899999999998 588899999996532 1222222221 234455568874 4566788999999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|+++++.++
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999998764 4799999999999986 4899999999999999999998774
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=370.82 Aligned_cols=216 Identities=28% Similarity=0.393 Sum_probs=183.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||+|.+|+ .|++||+.+.... +..+.. ..+.+.++.+|++........+||+|||||++|||||++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999986 5999999753211 111111 112344455577666666677899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
+|++|||||||++||+++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 9999999999999999999999999987643 7899999999998765 89999999999999999999986543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=373.03 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=186.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceEEECCEeCCCC--ChHH
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~i--~~~~ 1291 (1455)
++++||+++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999763 4567
Q ss_pred HhcccEEEeCCCCCCCCcHHHhcCcCC---C-CChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000511 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH---M-NDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1292 lR~~i~~VpQdp~lf~gTIreNLdp~~---~-~~d~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQrl~ 1363 (1455)
.|++++|+||++.+|+.|++||+.... . .+.++..+ ...+.++.+|++ ...+....+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999996421 1 11111111 122333444554 4456667789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 234 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNP 234 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999999987667899999999998865 8999999999999999999998765
Q ss_pred CcHH
Q 000511 1443 CSVF 1446 (1455)
Q Consensus 1443 ~s~f 1446 (1455)
...+
T Consensus 235 ~~~~ 238 (247)
T TIGR00972 235 KEKR 238 (247)
T ss_pred CChH
Confidence 4444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=368.94 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=182.2
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i~ 1297 (1455)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988876654 67899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCCCC-hHHHHHHHHHhcHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHMND-DLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~~~-d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
|+||++.+|++ |+++|+.+..... +.+..+ .+.+.++.+ +++...+.....||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 9999996542211 111111 112233333 455555666678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999998764 57899999999998866 89999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=374.75 Aligned_cols=223 Identities=26% Similarity=0.390 Sum_probs=188.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~~ 1289 (1455)
..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 6 AIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred ceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 36999999999964 4699999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCCC----CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
..+|++++|+||++.+|+.|++||+.+... .+ ++++.++++.+++.+.+ +........+||||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgG~~qr 158 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-----KDKLNTNALSLSGGQQQR 158 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----HHHHhCCcccCCHHHHHH
Confidence 677899999999999999999999965321 11 23344555555543222 223344567899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 159 LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999988668999999999999865 89999999999999999999987
Q ss_pred cCCcHH
Q 000511 1441 DECSVF 1446 (1455)
Q Consensus 1441 ~~~s~f 1446 (1455)
++.-.|
T Consensus 239 ~~~~~~ 244 (254)
T PRK14273 239 NPKNTK 244 (254)
T ss_pred CCCChH
Confidence 655443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=379.04 Aligned_cols=218 Identities=29% Similarity=0.454 Sum_probs=184.6
Q ss_pred EEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC----CChHH
Q 000511 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~----i~~~~ 1291 (1455)
|+++||+++|+++. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcccEEEeCCC--CCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000511 1292 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1292 lR~~i~~VpQdp--~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1365 (1455)
+|++++||+|+| .+|+.|+.+|+.+... .+.+++.+ ...+.++.+|++ ........+||||||||++||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 7899999999975321 22222211 122334444664 344666778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|++++.|+|+++..+
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999999999999999998754 4889999999999885 4999999999999999999999764
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=371.10 Aligned_cols=219 Identities=28% Similarity=0.434 Sum_probs=185.3
Q ss_pred EEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HHh
Q 000511 1219 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~lR 1293 (1455)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999877654 347
Q ss_pred cccEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1294 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
++++|+||+|.+|+ .|++||+.... ..+..+. .....+.++.+|++........+||+|||||++||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 89999999999997 59999996421 1111111 112234455557766666667789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
++|++|||||||++||+.+.+.+.+.|++.. .++|||++||+++.+.. ||++++|++|++++.|+++++.+++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 232 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFANP 232 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999998764 27899999999999876 8999999999999999999987643
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=367.77 Aligned_cols=215 Identities=35% Similarity=0.525 Sum_probs=194.2
Q ss_pred CCccEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHh
Q 000511 1215 FQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR 1293 (1455)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 35789999999999643 24699999999999999999999999999999999999999999999999999888888888
Q ss_pred cccEEEeCCCCCCCCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1294 GRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
++++|+||+|.+|++|+++|+++... ....++++..++.++.+.++.+ |+++.+++...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999986432 2334555666667788888888 89988898889999999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeE
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1429 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1429 (1455)
+|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987777999999999999988999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=372.32 Aligned_cols=215 Identities=29% Similarity=0.420 Sum_probs=183.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC---hHHHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---~~~lR~~ 1295 (1455)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 46999999999999999999999999999999999999999999999999998876 4567889
Q ss_pred cEEEeCCCCCCC-CcHHHhcCcCCC------------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1296 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1296 i~~VpQdp~lf~-gTIreNLdp~~~------------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
++|+||++.+|+ .|+++|+.+... .+++. .....+.++.+|++...+..+..||||||||+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE------KQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHH------HHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 999999998887 699999964211 11110 11123344455676666677788999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHh
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+||||++++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999998864 3799999999999998 48999999999999999999974
Q ss_pred c
Q 000511 1440 Q 1440 (1455)
Q Consensus 1440 ~ 1440 (1455)
+
T Consensus 234 ~ 234 (241)
T cd03256 234 D 234 (241)
T ss_pred H
Confidence 3
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=387.04 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=180.0
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH----hcccEEEeCCCCCCCC
Q 000511 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG 1308 (1455)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l----R~~i~~VpQdp~lf~g 1308 (1455)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+...+ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999998887 7899999999999985
Q ss_pred -cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCC
Q 000511 1309 -SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384 (1455)
Q Consensus 1309 -TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~l 1384 (1455)
||+||+.+... .+.++..+ ...+.++.+||+...+....+||||||||++|||||+++|+|||||||||+|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999965321 12222211 1223344447776677778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1385 DAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1385 D~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
|+.+.+.+++.+++.. .++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999999998763 37999999999998655 89999999999999999999998765444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=375.61 Aligned_cols=220 Identities=25% Similarity=0.468 Sum_probs=189.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999644457999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||+| .++..|++||+.+.. ..++++..+ .+.+.++.+|++........+||||||||++|||||+++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 455679999997531 122222221 1233444557766677777899999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
++|||||||++||..+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+++
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999988643 48999999999998889999999999999999999987653
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=373.81 Aligned_cols=219 Identities=28% Similarity=0.422 Sum_probs=185.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~~ 1290 (1455)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 369999999999999999999999999999999999975 589999999999875 3456
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCC----CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||++.+|++|++||+.+.. ... ++++.++++.+++.+.+ +...+....+||||||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-----KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHHHHHH
Confidence 7789999999999999999999996431 111 22344445554443221 2234566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 9999999999999999999999999999999999987667899999999999865 899999999999999999999876
Q ss_pred CC
Q 000511 1442 EC 1443 (1455)
Q Consensus 1442 ~~ 1443 (1455)
+.
T Consensus 239 ~~ 240 (253)
T PRK14242 239 PR 240 (253)
T ss_pred CC
Confidence 54
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=374.86 Aligned_cols=223 Identities=25% Similarity=0.390 Sum_probs=188.8
Q ss_pred CCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--
Q 000511 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN-- 1286 (1455)
Q Consensus 1214 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~-- 1286 (1455)
|....|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 33457999999999964 369999999999999999999999999999999999987 689999999999863
Q ss_pred CChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC---CC---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1287 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1287 i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
.+...+|++++|+||+|.+|+.|++||+.+... .. ++++.++++.++++. +++.........||+||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-----ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-----hhhhhhCCCcccCCHHHHH
Confidence 566788899999999999999999999975422 11 233445555554432 2233455556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeC-----------Ce
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-----------GH 1428 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~-----------G~ 1428 (1455)
|++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.+ ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987667899999999998865 899999996 67
Q ss_pred EEEeCChhHHhccCC
Q 000511 1429 LVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1429 ive~G~p~eLl~~~~ 1443 (1455)
++|.|+++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 242 LVEFNETKKIFNSPK 256 (269)
T ss_pred EEEeCCHHHHHhCcC
Confidence 999999999987553
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=368.95 Aligned_cols=215 Identities=27% Similarity=0.432 Sum_probs=185.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred EeCCCCC-CCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFL-FEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~l-f~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+ +..|+++|+..... .+..+.. ....+.++.+|++...+....+||||||||++||||++++|+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999987 46799999965321 1111111 1234455556787777777789999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999998865 37899999999999988999999999999999999999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=341.88 Aligned_cols=469 Identities=19% Similarity=0.252 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCChhhHHHHHHhhhhhhhcchhHHHHHHHHHH
Q 000511 941 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1020 (1455)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1020 (1455)
|.++..+..+...+........+.+...+++.++.++++.+|+.-+++...++++.++++|+..|.-. ...+..+.+..
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~ 132 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAI 132 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHH
Confidence 33333333444445556667788999999999999999999999999999999999999999999732 23344466677
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHH--HH
Q 000511 1021 VGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYF--MA 1098 (1455)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~l~~~p~~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~--~~ 1098 (1455)
+..+++.+.+++.+|.+.++.+..+++..+.+.+.++..-+--+...++...++.+++..++|.+..+..+-..+. .+
T Consensus 133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~ 212 (546)
T COG4615 133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN 212 (546)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence 7778888888998887666554444443333222211111111222233456788999999999998876543332 22
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 000511 1099 KFKEHVVLYQR----TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGN 1174 (1455)
Q Consensus 1099 ~~~~~~~~~~~----~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~ 1174 (1455)
.+...-....+ ..........|.++.+-. ++..+..++.. . .. .+.........-.+.+-+++.+
T Consensus 213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~----lIGlvf~lal~--~-~w----~st~~a~tivlvlLflr~pL~s 281 (546)
T COG4615 213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLG----LIGLVFWLALS--L-GW----ASTNVAATIVLVLLFLRTPLLS 281 (546)
T ss_pred hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHh--h-cc----chhhHHHHHHHHHHHHhhHHHH
Confidence 22211111111 111111233443332111 11111111110 0 00 0111111111222334567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECC
Q 000511 1175 FLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGR 1254 (1455)
Q Consensus 1175 l~~~~~~~e~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGr 1254 (1455)
++..+..+-++.+|..|+.++...|+.+.-....+.|+| ..|+++||.|.|.+.. --+..||++|+.||.|-|+|.
T Consensus 282 ~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~ 357 (546)
T COG4615 282 AVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGG 357 (546)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECC
Confidence 899999999999999999998764433222222333445 4699999999997653 457889999999999999999
Q ss_pred CCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcH
Q 000511 1255 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334 (1455)
Q Consensus 1255 tGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l 1334 (1455)
+||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++.|.-|-+||+.++ -+.+..+.+.+..-|++..+
T Consensus 358 NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 358 NGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred CCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998764 23344566667666766655
Q ss_pred HHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHh--cCCcEEEEeccCh
Q 000511 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE--CKGMTVITIAHRI 1412 (1455)
Q Consensus 1335 ~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~--~~~~TvI~IaHrl 1412 (1455)
.....-. |-... ...||-|||.|+++--|++-+.+|+++||=-+--|+.=.+...+.+--. -.|+||+.|||+-
T Consensus 434 ~~ktsl~--d~~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 434 AHKTSLN--DGRFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hhhhccc--CCccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 4322111 11111 1259999999999999999999999999999999999999887776433 2599999999999
Q ss_pred hhHhhhCEEEEEeCCeEEEeC
Q 000511 1413 STVLNMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1413 ~ti~~~DrI~vl~~G~ive~G 1433 (1455)
..-..+||++.|++|+++|.-
T Consensus 510 ~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=376.14 Aligned_cols=218 Identities=25% Similarity=0.339 Sum_probs=195.1
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.|+++|++++|+... .++|+|+||+|++||+++|+|++|||||||+++|.|+++ .+|+|.++|
T Consensus 2 ~i~~~nls~~~~~~~----~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEGG----NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCCC----CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 478999999996421 235999999999999999999999999999999999998 799999987
Q ss_pred -cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccC
Q 000511 669 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 747 (1455)
.|+||||+|++|++|++||+....++++++..++++.++|+..+..+|++++|.++++|.+||||||||++||||++++
T Consensus 77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999964445677888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhccccCcc
Q 000511 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFW 825 (1455)
Q Consensus 748 ~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 825 (1455)
|+|+||||||++||+.+.+.+.+. +.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++......+..
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~-l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~ 232 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKT-LKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQ 232 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHH
Confidence 999999999999999998877765 443 3457899999999999888999999999999999999999875544433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=384.12 Aligned_cols=220 Identities=24% Similarity=0.375 Sum_probs=187.5
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3889999999964 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
||||++.+|+. |++||+.+... .+.++..+ ...+.++.+|++.........||||||||++|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999975421 12222211 1223344446665566667789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
++|++|+||||||+||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988653 7899999999998766 89999999999999999999998876544
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=375.32 Aligned_cols=219 Identities=25% Similarity=0.459 Sum_probs=188.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp--~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||+| .+++.|++||+.+... .+.++..+ ...+.++.+||+..+......||||||||++|||||+.+|
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQP 159 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 4667899999975321 12222111 1223333346665566666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 160 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 160 DIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999987653 7899999999999989999999999999999999998764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=375.05 Aligned_cols=212 Identities=24% Similarity=0.392 Sum_probs=183.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999632 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCcCCC---CCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1298 VVPQSP--FLFEGSLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1298 ~VpQdp--~lf~gTIreNLdp~~~---~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
|+||+| .++..|+++|+.+... .+. +++.++++.+ |+..........||||||||++|||||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAV---------RMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC---------CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 999998 6788999999975321 121 2233333433 554444555568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHh
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+++|++|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+. .||||++|++|++++.|+++++.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999998764 4799999999999985 49999999999999999997653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=379.21 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=191.6
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..|+++||+.+|+ ...+++|+||+|++||.+.+.|||||||||++++|.||..|++|+|.+||.|+..+|++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 45799999999999999999999999999999999999999999999999999999987 6899
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC----CChH----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM----NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~----~~d~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
++|+|+.-||+- ||+||+.++-. ..++ ++.++|+.+++. ..-......|||||+||++||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~---------~~~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE---------GFADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch---------hhhhhChhhhChHHHHHHHHHHH
Confidence 999999999986 99999987533 2333 445555555544 44455667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCc
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1444 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s 1444 (1455)
|..+|++|+||||-|+||.+-...++.-+++.. .+.|.|.|||+-+.... +|||+||++|+|...|+|+|+..+|.+
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~ 230 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPAT 230 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcch
Confidence 999999999999999999999999998887653 38999999999887655 799999999999999999999999987
Q ss_pred HHH
Q 000511 1445 VFS 1447 (1455)
Q Consensus 1445 ~f~ 1447 (1455)
.|-
T Consensus 231 ~fV 233 (352)
T COG3842 231 RFV 233 (352)
T ss_pred HHH
Confidence 764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=375.75 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=186.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHHhcc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGR 1295 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~--~i~~~~lR~~ 1295 (1455)
.|+++|++++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 5899999999963 346999999999999999999999999999999999999999999999999984 3446678899
Q ss_pred cEEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1296 FAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1296 i~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
++|+||+| .+|+.|++||+.... ..+.++.++. ..+.++.+|++........+||+|||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999998 578899999996531 1222222221 2233444466666667778999999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999987753 799999999999987 5999999999999999999999864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=372.91 Aligned_cols=224 Identities=24% Similarity=0.342 Sum_probs=186.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCC--CCChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII--NTPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~--~i~~~ 1290 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 4699999999999999999999999999999999999987 4999999999997 45566
Q ss_pred HHhcccEEEeCCCCCCCC-cHHHhcCcCC---C--CCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M--NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~g-TIreNLdp~~---~--~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
.+|++++++||++.+|++ |+++|+.... . ... +++.++++..++.+.+ .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-----KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-----hhhhccChhhCCHHHHH
Confidence 788999999999999976 9999996421 1 011 2233344444332211 12345566789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999875 8999999999999999999998
Q ss_pred ccCCcHHHH
Q 000511 1440 QDECSVFSS 1448 (1455)
Q Consensus 1440 ~~~~s~f~~ 1448 (1455)
+++...+.+
T Consensus 237 ~~~~~~~~~ 245 (253)
T PRK14267 237 ENPEHELTE 245 (253)
T ss_pred hCCCcHHHH
Confidence 765433433
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=365.39 Aligned_cols=212 Identities=25% Similarity=0.399 Sum_probs=180.6
Q ss_pred cEEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---H
Q 000511 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~---l 1292 (1455)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cccEEEeCCCCCCCC-cHHHhcCcC---CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1293 R-GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1293 R-~~i~~VpQdp~lf~g-TIreNLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
| ++++|+||+|.+|++ |+++|+... .....++.. ..+.+.++.+|++........+||||||||++||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 3 679999999999876 999998642 111222111 112344455577766677777899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCC
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 1434 (1455)
++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.|+
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998763 4799999999999999999999999999998775
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=368.42 Aligned_cols=493 Identities=19% Similarity=0.201 Sum_probs=339.6
Q ss_pred HHHhhhhhhhhhhhcccCCCC---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 000511 909 ASRNGNDLWLSYWVDTTGSSQ---TKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLF 985 (1455)
Q Consensus 909 ~~~~~~~~wl~~w~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~f 985 (1455)
......++|+..|.....+.- ........+.+|.+++.+.......+.++......+.-..+-+.++++-+...-.|
T Consensus 57 l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y 136 (604)
T COG4178 57 LLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYY 136 (604)
T ss_pred HHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 334445677777764321100 01112233567777777777777778888888888888888889999888777333
Q ss_pred cccCCh-----hhHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHhhhhHH--------------HHHH----HHHHHHH
Q 000511 986 FDQTPG-----GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLS--------------YVQV----FFLLLLV 1042 (1455)
Q Consensus 986 f~~~~~-----G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~--------------~~~~----~~~l~~~ 1042 (1455)
+..... -+.=+|+.+|+...-+..-.....++.++++++...+++. +..| |++++.+
T Consensus 137 ~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya 216 (604)
T COG4178 137 RLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYA 216 (604)
T ss_pred HHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHH
Confidence 332221 2344688888876655444444444444444443333222 1111 1111122
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHhhchhHhHHHHhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 1043 PFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1121 (1455)
Q Consensus 1043 p~~-~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl 1121 (1455)
++. .+..++.+...+..-+..+.|..-|. ...-.-+....|-.|+.|+...++..+..+.-.+.+......+.++
T Consensus 217 ~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~----~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l 292 (604)
T COG4178 217 ISASLLTHLIGRPLIRLNFERQKLEADFRY----SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRL 292 (604)
T ss_pred HHHHHHHHHHccccccccHHHHHHHHHHHH----HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 211 12224444444544455555555443 3344556778899999999888888777777666665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---
Q 000511 1122 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV--- 1198 (1455)
Q Consensus 1122 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~--- 1198 (1455)
+..-...+-+.+.+ ..+.. ....-.+..+.|.++.+.....++...+++++..+.++.+-...+.|+.++.+.
T Consensus 293 ~~~~~gy~~~s~v~-P~li~---ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~ 368 (604)
T COG4178 293 TWFQLGYGWLSVVL-PILIA---APRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEA 368 (604)
T ss_pred HHhhhhhhHHHHHH-HHHhc---cHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433333222211 11100 001113456778888888888899999999999999999999999999998732
Q ss_pred ---CccccccCC-CCCCCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCC
Q 000511 1199 ---PQEELCGYQ-SLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274 (1455)
Q Consensus 1199 ---~~e~~~~~~-~~~~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~ 1274 (1455)
+++...... .....-..+..|+|+|++..-+++. ..+++.||+|+|||.+-|.|+||||||||+++|.|+.+--+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~ 447 (604)
T COG4178 369 AQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS 447 (604)
T ss_pred ccCcccccCcccccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC
Confidence 222111100 0000000147899999999987654 78999999999999999999999999999999999999999
Q ss_pred ceEEECCEeCCCCChHHHhcccEEEeCCCCCCCCcHHHhcC-cCCC--CChHHHHHHHHHhcHHHHHHhC-CCchhhhcC
Q 000511 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHM--NDDLKIWSVLEKCHVKEEVEAV-GLETFVKES 1350 (1455)
Q Consensus 1275 G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~gTIreNLd-p~~~--~~d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~ 1350 (1455)
|+|.+-. -+++-++||.|.+-.||+||-|. |... ++|+|+.++|.+|||.+.++++ +.+. -+
T Consensus 448 G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-W~-- 513 (604)
T COG4178 448 GRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-WD-- 513 (604)
T ss_pred CceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-Hh--
Confidence 9986631 23589999999999999999985 3333 7899999999999999999987 4443 22
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEe
Q 000511 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1425 (1455)
Q Consensus 1351 G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~ 1425 (1455)
.-||+|||||+++||.+|++|++++||||||+||.++|..+.+.++++.+++|||.|+||.....-.++.+-++
T Consensus 514 -~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 514 -RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred -hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 25999999999999999999999999999999999999999999999999999999999988777777776664
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=370.26 Aligned_cols=220 Identities=30% Similarity=0.397 Sum_probs=182.4
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~---~~lR~~ 1295 (1455)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987654 346889
Q ss_pred cEEEeCCCCCCC-CcHHHhcCcCCCCCh---HHHH---HHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1296 FAVVPQSPFLFE-GSLRDNLDPFHMNDD---LKIW---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1296 i~~VpQdp~lf~-gTIreNLdp~~~~~d---~ei~---~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
++|+||++.+|+ .|+++|+........ ..+. ..-++....+.++.+|++........+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 999999999886 599999964211000 0000 000111223344455676666677788999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999998764 37899999999999865 8999999999999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=380.54 Aligned_cols=217 Identities=28% Similarity=0.415 Sum_probs=184.3
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..|+++|++++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+|+||++.+|. .|++||+.++.. .++.+..+. ..+.++.+|+.........+||+|||||++|||||+++|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 99999999886 599999975332 122222111 123334345544444444579999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
++|+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999998864 47899999999999976 999999999999999999999764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=377.67 Aligned_cols=218 Identities=29% Similarity=0.448 Sum_probs=184.7
Q ss_pred EEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC----CChHH
Q 000511 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~----i~~~~ 1291 (1455)
++++|++++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 469999999999999999999999999999999999999999999999999863 34667
Q ss_pred HhcccEEEeCCC--CCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000511 1292 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1292 lR~~i~~VpQdp--~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1365 (1455)
.|++++||||+| .+|+.|+++|+.+... .+.++..+ ...+.++.+||+. ........||||||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 6888899999964321 23332221 1233444557753 34566778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999987643 7899999999999865 899999999999999999998764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=372.69 Aligned_cols=222 Identities=27% Similarity=0.402 Sum_probs=187.0
Q ss_pred CCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--C
Q 000511 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1287 (1455)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i 1287 (1455)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3568999999999963 4699999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC---C--C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhH
Q 000511 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1358 (1455)
Q Consensus 1288 ~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~--~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQ 1358 (1455)
+...+|++++|+||+|.+|++|++||+.+... . + ++++.++++.+++.+.+ ....+....+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-----KDRLHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHH
Confidence 45678899999999999999999999964211 1 1 12234444444432211 123455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhH
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~e 1437 (1455)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999965 79999999999999999999
Q ss_pred HhccCC
Q 000511 1438 LLQDEC 1443 (1455)
Q Consensus 1438 Ll~~~~ 1443 (1455)
+..++.
T Consensus 249 ~~~~~~ 254 (267)
T PRK14235 249 MFTNPD 254 (267)
T ss_pred HHhCCC
Confidence 986544
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=333.34 Aligned_cols=207 Identities=29% Similarity=0.385 Sum_probs=180.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~lR~~ 1295 (1455)
|+|+||+.+|+.+ +++|+||||+|++||.+-++||||||||||+++|++...|+.|+|.++|.|+++++.+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999876 7899999999999999999999999999999999999999999999999999887754 57999
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCCC---CCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~~---~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
||+|.||--|... |+.||+.+--. .+. +++.++|+.+||.+ ....-...|||||+||+|||||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~---------k~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH---------KARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccch---------hhhcCccccCchHHHHHHHHHH
Confidence 9999999988765 99999864211 122 34556666666554 4444566899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhh-CEEEEEeCCeEEEeCCh
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl~~G~ive~G~p 1435 (1455)
+..+|++||=||||-|||+++...|++.+.+.. .|.||++.||+.+.+.++ -|++.+++|+++....+
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999998764 599999999999999987 78999999999976554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=385.85 Aligned_cols=222 Identities=25% Similarity=0.413 Sum_probs=191.3
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCC--ceEEECCEeCCCCChHHHh
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--GQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~--G~I~IdG~di~~i~~~~lR 1293 (1455)
.|.|+++||+++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+.. +
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 478999999999964 369999999999999999999999999999999999999999 9999999999877653 6
Q ss_pred cccEEEeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1294 GRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
+++++|+|++.+|+. |++||+.+.- ..++.++.+ ...+.++.+||+...+....+||||||||++|||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 789999999999977 9999997532 123333222 1233444457776677777899999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC---CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcH
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK---GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1445 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~---~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~ 1445 (1455)
++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++.+++...
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~ 233 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcH
Confidence 99999999999999999999999999987643 6899999999998765 8999999999999999999999887655
Q ss_pred H
Q 000511 1446 F 1446 (1455)
Q Consensus 1446 f 1446 (1455)
|
T Consensus 234 ~ 234 (362)
T TIGR03258 234 F 234 (362)
T ss_pred H
Confidence 5
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=364.11 Aligned_cols=202 Identities=29% Similarity=0.394 Sum_probs=171.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~lR~~ 1295 (1455)
|+++|++++|+.+.+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred cEEEeCCCCCCC-CcHHHhcCcCC---CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1296 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1296 i~~VpQdp~lf~-gTIreNLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
++|+||+|.+|+ .|++||+.... ... ++++.++++ .+|++........+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALE---------KVGLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------HcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999887 59999996431 111 223333444 4455554555556899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeE
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1429 (1455)
|+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998764 47899999999999875 899999999985
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=365.48 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=175.6
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH----H
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----L 1292 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~----l 1292 (1455)
|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcccEEEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1293 RGRFAVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
|++++|+||+|.+|.+ |++||+..... ....+. ...+.+.++.+|++........+||||||||++||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 6789999999999987 99999975321 111111 11234455556777777777778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeE
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1429 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1429 (1455)
+++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988754 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=368.74 Aligned_cols=226 Identities=26% Similarity=0.379 Sum_probs=188.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCCChHHH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVRDL 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~~~~l 1292 (1455)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcccEEEeCCCCCC-CCcHHHhcCcCCC-----CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1293 RGRFAVVPQSPFLF-EGSLRDNLDPFHM-----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf-~gTIreNLdp~~~-----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
|++++|+||+|.+| +.|++||+.+... .. ++++.++++.+++.+.+ +........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-----KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCCcccCCHHHHHHH
Confidence 99999999999755 5799999964311 01 12344444444432211 1234455668999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++.++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcC
Confidence 999999999999999999999999999999999998767899999999999986 4899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000511 1442 ECSVFSSFV 1450 (1455)
Q Consensus 1442 ~~s~f~~l~ 1450 (1455)
+...+.+.+
T Consensus 236 ~~~~~~~~~ 244 (250)
T PRK14247 236 PRHELTEKY 244 (250)
T ss_pred CccHHHHHH
Confidence 554454433
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=360.02 Aligned_cols=205 Identities=27% Similarity=0.356 Sum_probs=172.4
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
|++++++..|... ..+...+|+|+||+|++||+.+|+|.||+|||||++++.+.-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6789999888763 22234579999999999999999999999999999999999999999999987
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCCC----CHHHHHHHHH---HhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKNY----DPQSYSETLK---ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~~----~~~~~~~v~~---~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
+||+++|++.|++ .||.|||.|..+. .++..++|.+ ..+|.+. -+....+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhH
Confidence 5999999999998 5999999997432 2334444444 4444432 345567999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
|+|||||..+|+|||.|||||||||+|.+.|++.+..-....|-|+++|||.++.++. ||||.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999986332223347799999999999987 999999999999999999887
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
-.
T Consensus 230 F~ 231 (339)
T COG1135 230 FA 231 (339)
T ss_pred hc
Confidence 54
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=381.07 Aligned_cols=226 Identities=23% Similarity=0.390 Sum_probs=189.1
Q ss_pred cEEEEEEEEEecCC-----------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC
Q 000511 1218 LIEFQNVTMRYKPS-----------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1286 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~-----------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~ 1286 (1455)
.++++|++++|+.. ...+++||||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHH---HhcccEEEeCCC--CCCC-CcHHHhcCc----CC-CCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCC
Q 000511 1287 TPVRD---LRGRFAVVPQSP--FLFE-GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISF 1354 (1455)
Q Consensus 1287 i~~~~---lR~~i~~VpQdp--~lf~-gTIreNLdp----~~-~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~L 1354 (1455)
++.+. +|++++||+|+| .+++ .||++|+.. +. ..+.++..+. ..+.++.+|++ .........|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCChHHhcCCcccC
Confidence 87554 678999999999 4774 699999853 11 1233332221 12334445663 3456667789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEE
Q 000511 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVE 1431 (1455)
Q Consensus 1355 SgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1431 (1455)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999986 99999999999999
Q ss_pred eCChhHHhccCCcHHHH
Q 000511 1432 QGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1432 ~G~p~eLl~~~~s~f~~ 1448 (1455)
.|+++++++++...|.+
T Consensus 243 ~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 243 LGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EcCHHHHHcCCCCHHHH
Confidence 99999999876555544
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=349.72 Aligned_cols=196 Identities=29% Similarity=0.397 Sum_probs=167.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+..|++|+|.+||.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 5899999999975 5799999999999999999999999999999999999999999999999988443 45799
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCCC---C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~~---~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
||+|++.||+- ||++|+...-+. + .+...+.|+.+ ||...-+.-...||||||||++|||||+
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V---------gL~~~~~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV---------GLAGFEDKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc---------CCcchhhcCccccChHHHHHHHHHHHHh
Confidence 99999999997 999998654322 1 12333444444 5555555667789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeC--CeE
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH--GHL 1429 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~i 1429 (1455)
.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||+++.... +|||+||.+ |+|
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999887754 36999999999997654 899999999 555
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=363.27 Aligned_cols=206 Identities=29% Similarity=0.446 Sum_probs=174.4
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 469999999999999999999999999999999999999999999999999986553 4678999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||+|.+|. .|+++|+..... .+.++.. ....+.++.+|++........+||||||||++|||||+++|++
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 599999964311 1111111 1123444555776666666678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998864 37899999999998765 8999999999998875
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=375.67 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC--------
Q 000511 1218 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN-------- 1286 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~-------- 1286 (1455)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHHhcccEEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCc-
Q 000511 1287 ----------------TPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE- 1344 (1455)
Q Consensus 1287 ----------------i~~~~lR~~i~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLd- 1344 (1455)
.+...+|++++||||+| .+|..|++||+.+.. ..+.+++.+. ..+.++.+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~ 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELVGLDE 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCCh
Confidence 13467789999999987 688889999997542 1233333221 12334445775
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEE
Q 000511 1345 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEIL 1422 (1455)
Q Consensus 1345 t~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~ 1422 (1455)
...+....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. .||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 45666777899999999999999999999999999999999999999999998764 4899999999999875 499999
Q ss_pred EEeCCeEEEeCChhHHhcc
Q 000511 1423 ILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1423 vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|++|++++.|+++++.++
T Consensus 237 vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 237 FFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEECCEEEEECCHHHHhcC
Confidence 9999999999999998875
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=373.03 Aligned_cols=220 Identities=23% Similarity=0.379 Sum_probs=187.6
Q ss_pred cEEEEEEEEEecCC-CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1218 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||+| .++..|+.+|+.+.. ..+++++.+. ..+.++.+|++.........||||||||++|||||+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~ 158 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALR 158 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999998 467889999997431 1233332211 12223333555445556678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|++++++++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999987653 78999999999999889999999999999999999998643
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=367.38 Aligned_cols=220 Identities=22% Similarity=0.371 Sum_probs=187.7
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i 1296 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 2 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 2 ILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred eEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3789999999964 469999999999999999999999999999999999999999999999999988776654 5679
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCCCChHHH-------HHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~~~d~ei-------~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
+|+||++.+|++ |++||+....... ..+ .....+....+.++.+|++.........||||||||++||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRD-KSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcc-cccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 9999997542110 000 0001112234455555777767777778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
+++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999987668999999999999976 89999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=372.69 Aligned_cols=227 Identities=26% Similarity=0.343 Sum_probs=189.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HHhc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~lR~ 1294 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999876643 3578
Q ss_pred ccEEEeCCCCCCCC-cHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~g-TIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
+++|+||++.+|++ |++||+.+. ...+.++.. ....+.++.+|++.........||||||||++||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999999999987 999999642 111211111 11223344456665556666789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
++|++|||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++.+++....
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 239 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRV 239 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHH
Confidence 99999999999999999999999999987643 7899999999999876 89999999999999999999987654444
Q ss_pred HHHHH
Q 000511 1447 SSFVR 1451 (1455)
Q Consensus 1447 ~~l~~ 1451 (1455)
+.++.
T Consensus 240 ~~~~~ 244 (269)
T PRK11831 240 RQFLD 244 (269)
T ss_pred HHHHH
Confidence 55543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=367.17 Aligned_cols=216 Identities=25% Similarity=0.413 Sum_probs=185.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i~ 1297 (1455)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 369999999999999999999999999999999999999999999999999988776554 56899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
|+||++.+|++ |+++|+..... ...++.. ..+.+.++.+|++........+||+|||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 99999964321 1111111 123445555678777777778999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 223 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAAN 223 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhcC
Confidence 999999999999999999999998764 47899999999987765 899999999999999999998753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=383.08 Aligned_cols=221 Identities=25% Similarity=0.444 Sum_probs=189.5
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..++++|++++|.. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999963 4699999999999999999999999999999999999999999999999999887765 5789
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+||+|++.+|+. ||+||+.+.-. .++.++.+ .+.+.++.+|++.........||||||||++|||||+++|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999975321 22222211 1223344446666666667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+.+.+.. ||||++|++|+|++.|+|+++++++...|
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 99999999999999999999999988653 7899999999998765 89999999999999999999999876555
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=369.97 Aligned_cols=223 Identities=27% Similarity=0.389 Sum_probs=185.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~~ 1290 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCC---CCh-----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---NDD-----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~~d-----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|+.++|+||++.+|++|+++|+.+... ..+ +++.++++.++++.. .....+....+||||||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-----TKDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-----hHHHhccChhhCCHHHHHHH
Confidence 67889999999999999999999975321 111 123333333333210 01233455678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+++||||||++||+++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987677999999999999876 899999999999999999999876
Q ss_pred CCcHHH
Q 000511 1442 ECSVFS 1447 (1455)
Q Consensus 1442 ~~s~f~ 1447 (1455)
+.-.|.
T Consensus 237 ~~~~~~ 242 (251)
T PRK14251 237 PKKQIT 242 (251)
T ss_pred CCCHHH
Confidence 543343
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=367.07 Aligned_cols=217 Identities=27% Similarity=0.379 Sum_probs=190.2
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcc
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1295 (1455)
.+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4579999999852 4699999999999999999999999999999999999999999999998 3
Q ss_pred cEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1296 i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+ +.++.+++.+.+||+|||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865444445566778888888877776 67788888888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHH-HHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1374 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~-i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
||||||||++||+++.+.+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+.. +.|.+.+
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-~~~~~~~ 256 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLR-PDFSSKL 256 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcc-hHHHHHH
Confidence 9999999999999999988775 45555689999999999999889999999999999999999998643 3455433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=385.76 Aligned_cols=220 Identities=28% Similarity=0.393 Sum_probs=187.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
||||++.+|+. |++||+.+... .+..+..+ ...+.++.+|++.........||||||||++|||||+++|+
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975321 12222111 12334444566655666667899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
+||||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|+++..++...|
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999987643 7899999999998765 89999999999999999999998776544
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=365.83 Aligned_cols=227 Identities=26% Similarity=0.383 Sum_probs=189.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC--------h
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--------V 1289 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--------~ 1289 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999963 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcccEEEeCCCCCCC-CcHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~-gTIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1455)
..+|++++|+||++.+|+ .|++||+... .....++..+ ...+.++.+|++........+||||||||++|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 567889999999999886 5999999642 1112211111 12344555677766677778999999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
|||++++|++|||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 235 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999999999999999999999999998764 47899999999999876 8999999999999999999997654
Q ss_pred Cc-HHHHHHH
Q 000511 1443 CS-VFSSFVR 1451 (1455)
Q Consensus 1443 ~s-~f~~l~~ 1451 (1455)
.- ..+.++.
T Consensus 236 ~~~~~~~~~~ 245 (250)
T PRK11264 236 QQPRTRQFLE 245 (250)
T ss_pred CCHHHHHHHH
Confidence 32 3344443
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=364.75 Aligned_cols=217 Identities=29% Similarity=0.472 Sum_probs=186.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC--ChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT--PVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i--~~~~lR~~i 1296 (1455)
++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 4699999999999999999999999999999999999999999999999999764 345678899
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||++.+|. .|+++|+.+.. ..+..+..+ ...+.++.+|++.........||+|||||++||||++++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 99999999886 59999996531 111221111 223455556777777777788999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
|++++|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 99999999999999999999999998764 47999999999999865 8999999999999999999998654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=368.84 Aligned_cols=221 Identities=23% Similarity=0.360 Sum_probs=186.8
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC--------
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-------- 1287 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i-------- 1287 (1455)
.+.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 4699999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHHHhcccEEEeCCCCCCCC-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhh-hcCCCCCCh
Q 000511 1288 -----PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSV 1356 (1455)
Q Consensus 1288 -----~~~~lR~~i~~VpQdp~lf~g-TIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v-~e~G~~LSg 1356 (1455)
....+|++++|+||++.+|++ |++||+.... ...+.+.. ..+.+.++.+|++... +.....|||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHcCCChhhhhCCcccCCH
Confidence 135678899999999999985 9999996421 11111111 1123445555776554 566678999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1357 GQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
|||||++|||||+++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998764 48999999999999986 89999999999999999
Q ss_pred hhHHhccCC
Q 000511 1435 PQTLLQDEC 1443 (1455)
Q Consensus 1435 p~eLl~~~~ 1443 (1455)
++++.+.+.
T Consensus 236 ~~~~~~~~~ 244 (257)
T PRK10619 236 PEQLFGNPQ 244 (257)
T ss_pred HHHhhhCcc
Confidence 999986543
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=350.05 Aligned_cols=178 Identities=33% Similarity=0.566 Sum_probs=166.4
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+...+++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 578999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
+||+|.+|++|++||+ ..+||+|||||++||||++++|++||||
T Consensus 80 ~~q~~~~~~~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD 123 (178)
T cd03247 80 LNQRPYLFDTTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123 (178)
T ss_pred EccCCeeecccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 3479999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCeEEEeC
Q 000511 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G 1433 (1455)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999998877789999999999999889999999999998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=366.21 Aligned_cols=218 Identities=30% Similarity=0.483 Sum_probs=186.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC----------
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---------- 1288 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~---------- 1288 (1455)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHHHhcccEEEeCCCCCCC-CcHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1289 ---VRDLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1289 ---~~~lR~~i~~VpQdp~lf~-gTIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
...+|++++++||++.+|+ .|+++|+.... ....++.. ..+.+.++.+|++...+.....|||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 2467889999999999885 69999997421 11111111 12344555557776677777889999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhH
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~e 1437 (1455)
|++||||++++|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ |||+++|++|++++.|++++
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987653 7899999999999865 89999999999999999999
Q ss_pred HhccCC
Q 000511 1438 LLQDEC 1443 (1455)
Q Consensus 1438 Ll~~~~ 1443 (1455)
+.+.+.
T Consensus 234 ~~~~~~ 239 (252)
T TIGR03005 234 IFRQPK 239 (252)
T ss_pred HhcCCC
Confidence 987654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=362.66 Aligned_cols=209 Identities=28% Similarity=0.442 Sum_probs=176.5
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 346778999
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+|+||+|.+|++ |++||+.... ..+.++..+ ...+.++.+|++........+||||||||++||||++++|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999985421 112211111 1233444456666666677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999998764 47899999999998876 8999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=326.57 Aligned_cols=211 Identities=26% Similarity=0.425 Sum_probs=182.4
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|.+++|.++|.. .+ -..+++|++||+|||+||||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999963 22 257899999999999999999999999999999999999999999999988875 567999
Q ss_pred EeCCCCCCCC-cHHHhcCcCC----CC---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFH----MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~----~~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+.||.-||.- ||++|+..+- +. ..+.+..++.++|+..+.+ .-...||||||||++|||+++|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~---------RLP~~LSGGqRQRvALARclvR 146 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK---------RLPGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh---------hCccccCchHHHHHHHHHHHhc
Confidence 9999999986 9999987553 22 2345677777777665544 3345799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCc
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1444 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s 1444 (1455)
+.+||+||||.|+||+.-...|...+.+.. ++.|+++|||.++.++. +||++++|+|||++.|+-+++++.++.
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~~ 223 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCCh
Confidence 999999999999999999999999887765 57899999999998865 899999999999999999999987653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=362.61 Aligned_cols=207 Identities=25% Similarity=0.385 Sum_probs=175.8
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---Hh
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~---lR 1293 (1455)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 46999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cccEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1294 -GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1294 -~~i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
++++|+||+|.+|+ .|++||+.... ..+..+. .+ ...+.++.+|++.........||||||||++||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~---~~--~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA---KE--RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHH---HH--HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 68999999999986 59999996521 1111111 11 123455555777667777778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEE
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLV 1430 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~iv 1430 (1455)
+++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=369.92 Aligned_cols=220 Identities=23% Similarity=0.377 Sum_probs=187.1
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~ 1289 (1455)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999953 469999999999999999999999999999999999997 589999999999864 346
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
..+|+.++|+||++.+|++|+++|+.... ..++ +++.++++.+++.+.+ +...+.....||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-----KDDLHKSALTLSGGQQQR 171 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----hhhhcCCcccCCHHHHHH
Confidence 67889999999999999999999996531 1111 2234444444443221 234566677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++||||++++|++|||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988778999999999998865 89999999999999999999987
Q ss_pred cCC
Q 000511 1441 DEC 1443 (1455)
Q Consensus 1441 ~~~ 1443 (1455)
.+.
T Consensus 252 ~~~ 254 (267)
T PRK14237 252 NPK 254 (267)
T ss_pred CCC
Confidence 553
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=372.40 Aligned_cols=220 Identities=28% Similarity=0.460 Sum_probs=188.6
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCC---ceEEECCEeCCCCChHHHh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~---G~I~IdG~di~~i~~~~lR 1293 (1455)
+.|+++|++++|++...++|+|+||+|++||++||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996544469999999999999999999999999999999999999987 8999999999888877889
Q ss_pred cccEEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1294 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1294 ~~i~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
++++|+||+| .+++.|++||+.+.. ..++++..+ ...+.++.+|++...+....+||+|||||++||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999998 467889999997531 122322211 122334444666666666779999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+..||||++|++|++++.|+++++.+.
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988653 7899999999999988999999999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=383.73 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=189.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++.+++...+|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-CCCcHHHhcCcCCC-----C------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000511 1298 VVPQSPFL-FEGSLRDNLDPFHM-----N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1298 ~VpQdp~l-f~gTIreNLdp~~~-----~------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1455)
++||++.+ |+.|++||+.++.. . +++++.++++.+++ ..........||||||||++||
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl---------~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGV---------AQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCC---------chhhcCChhhCCHHHHHHHHHH
Confidence 99999987 57799999965321 1 12234455555544 3334445568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
|||+++|+||+|||||++||+.+...+.+.|++.. +++|||+++|+++.+.. ||||++|++|++++.|+|++++..+
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~- 230 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD- 230 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcH-
Confidence 99999999999999999999999999999998875 47899999999999954 8999999999999999999998743
Q ss_pred cHHHHHH
Q 000511 1444 SVFSSFV 1450 (1455)
Q Consensus 1444 s~f~~l~ 1450 (1455)
.+.+++
T Consensus 231 -~l~~~~ 236 (402)
T PRK09536 231 -TLRAAF 236 (402)
T ss_pred -HHHHHh
Confidence 455544
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=368.24 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=183.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcC---CCC--CCceEEECCEeCCCC--ChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPI--CGGQILVDGLNIINT--PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl---~~~--~~G~I~IdG~di~~i--~~~ 1290 (1455)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5899999999964 4699999999999999999999999999999999997 454 589999999999764 346
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCC---CC-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||+|.+|++|+++|+.+.. .. .. +++.++++.+++.+. ++......+.+||||||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-----VKDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-----hhhhhhCCcccCCHHHHHHH
Confidence 7788999999999999999999996421 11 11 223333333333211 12345666778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999999987778999999999999865 899999999999999999999876
Q ss_pred CCc
Q 000511 1442 ECS 1444 (1455)
Q Consensus 1442 ~~s 1444 (1455)
+..
T Consensus 236 ~~~ 238 (250)
T PRK14245 236 PEK 238 (250)
T ss_pred CCC
Confidence 543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=351.77 Aligned_cols=191 Identities=31% Similarity=0.390 Sum_probs=161.6
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------cEEE
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 672 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y 672 (1455)
.+.+++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|.|...|++|+|.++| .+||
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 4678888888864 2359999999999999999999999999999999999999999999986 5899
Q ss_pred EcCCCCCCCc-CHHHHhccCCCCC-------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHH
Q 000511 673 VPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1455)
Q Consensus 673 ~~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARal 744 (1455)
|+|++-|+.= ||+|||.||.+.. +++..+.++..+|...-+..| ..||||||||||||||+
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 9999998864 9999999986541 346777888888876554444 58999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeC--CeEE
Q 000511 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK--GQVK 808 (1455)
Q Consensus 745 y~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~--G~i~ 808 (1455)
..+|++|||||||+|||+.|..++-+.++.--...++|+++|||++++.- -+|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999998877643221334689999999999855 4999999998 4553
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=370.01 Aligned_cols=220 Identities=23% Similarity=0.405 Sum_probs=187.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|++..+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCC--CCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp~--lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||+|. ++..|+++|+..... ...++..+ .+.+.++.+|++........+||+|||||++||||++++|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999994 445689999864321 12222111 1223344446655556667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
++|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||||++|++|++++.|+++++.++.
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 99999999999999999999999988643 78999999999999889999999999999999999997753
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=377.49 Aligned_cols=226 Identities=25% Similarity=0.408 Sum_probs=186.8
Q ss_pred cEEEEEEEEEecCC--------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh
Q 000511 1218 LIEFQNVTMRYKPS--------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~ 1289 (1455)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---HHhcccEEEeCCCC--CCCC-cHHHhcCc----CCCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhH
Q 000511 1290 R---DLRGRFAVVPQSPF--LFEG-SLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1358 (1455)
Q Consensus 1290 ~---~lR~~i~~VpQdp~--lf~g-TIreNLdp----~~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQ 1358 (1455)
. .+|+++++|||||. +++. |+.+|+.. .......+. +....+.++.+|++. ........|||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 3 56789999999994 5553 89888742 111122111 112234444446643 3455667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
|||++|||||+.+|++||+||||++||..+.+.|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 8899999999999975 899999999999999999
Q ss_pred hHHhccCCcHHHH
Q 000511 1436 QTLLQDECSVFSS 1448 (1455)
Q Consensus 1436 ~eLl~~~~s~f~~ 1448 (1455)
+++++++...|.+
T Consensus 240 ~~~~~~p~hpyt~ 252 (327)
T PRK11308 240 EQIFNNPRHPYTQ 252 (327)
T ss_pred HHHhcCCCCHHHH
Confidence 9999876555554
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=373.05 Aligned_cols=218 Identities=30% Similarity=0.463 Sum_probs=185.0
Q ss_pred EEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHH
Q 000511 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~~~~ 1291 (1455)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcccEEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000511 1292 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1292 lR~~i~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1365 (1455)
+|++++|+||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+|++. ........||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 578899999996431 1222222211 233444557763 45666778999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
||++++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998764 37899999999998865 899999999999999999998764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=368.48 Aligned_cols=219 Identities=23% Similarity=0.385 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC--C---CCceEEECCEeCCCC--ChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~i--~~~ 1290 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5899999999963 369999999999999999999999999999999999953 6 499999999998653 345
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcC----CCCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPF----HMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~----~~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|+.++|+||+|.+|+.|++||+... +... ++++.++++.+++.+. +....+....+||+|||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-----VKDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-----HHHHHhcCcccCCHHHHHHH
Confidence 678899999999999999999999642 1111 1223334444443221 12345566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|++|||||||++||.++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987667999999999998865 899999999999999999999876
Q ss_pred CC
Q 000511 1442 EC 1443 (1455)
Q Consensus 1442 ~~ 1443 (1455)
+.
T Consensus 238 ~~ 239 (252)
T PRK14239 238 PK 239 (252)
T ss_pred CC
Confidence 54
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=355.86 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=178.7
Q ss_pred EEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcc
Q 000511 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~ 1295 (1455)
|+++||+++|++.. +++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred cEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1296 i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
++|+||+|.+|++|++||+.+....++++.+++++.+++.+.+..+ |+++.+++.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876555666778888888998888877 88998988889999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHH-HHHHhc-CCcEEEEeccChhhHhhhCEEEEEeCCe
Q 000511 1374 VLCLDECTANVDAQTASILQN-AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1428 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~-~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1428 (1455)
+++|||||++||.++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999887766 566553 4689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=367.24 Aligned_cols=221 Identities=29% Similarity=0.437 Sum_probs=185.7
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~~ 1289 (1455)
|.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 56999999999964 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCCC----CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
..+|++++|+||+|.+|+.|+++|+..... .+ ++++.++++.+++.+. +....+....+||+|||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-----VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-----hHHHHhcCCCCCCHHHHHH
Confidence 678999999999999999999999964321 11 1223334444433221 1233455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFT 234 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887668899999999998866 89999999999999999999987
Q ss_pred cCCc
Q 000511 1441 DECS 1444 (1455)
Q Consensus 1441 ~~~s 1444 (1455)
++..
T Consensus 235 ~~~~ 238 (250)
T PRK14240 235 NPKD 238 (250)
T ss_pred CCCC
Confidence 6543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=374.64 Aligned_cols=221 Identities=24% Similarity=0.373 Sum_probs=185.1
Q ss_pred CccEEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC----C-
Q 000511 1216 QGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----T- 1287 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~----i- 1287 (1455)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999996432 259999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHHHhcccEEEeCCC--CCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHH
Q 000511 1288 PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1288 ~~~~lR~~i~~VpQdp--~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQr 1361 (1455)
+...+|++++|+||+| .+|+.|+++|+.+... ...++..+. +.+.++.+|++ ...+.....||||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 4567888999999998 4678899999964321 122222211 22334444773 44566677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHH
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eL 1438 (1455)
++|||||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 37899999999998765 899999999999999999998
Q ss_pred hcc
Q 000511 1439 LQD 1441 (1455)
Q Consensus 1439 l~~ 1441 (1455)
.++
T Consensus 239 ~~~ 241 (289)
T PRK13645 239 FSN 241 (289)
T ss_pred hcC
Confidence 764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=368.44 Aligned_cols=221 Identities=26% Similarity=0.399 Sum_probs=184.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCCCC--hHH
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTP--VRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i~--~~~ 1291 (1455)
-+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcccEEEeCCCCCCCCcHHHhcCcCC---CC--C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1292 lR~~i~~VpQdp~lf~gTIreNLdp~~---~~--~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
+|++++|+||++.+|++|+++|+.+.. .. . ++++.++++..++.+. +.+.++..+.+||+|||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-----LGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-----hhhHhhcChhhCCHHHHHHH
Confidence 788999999999999999999996431 11 1 1223333333333211 11245566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987678999999999999875 899999999999999999999987
Q ss_pred CCcHH
Q 000511 1442 ECSVF 1446 (1455)
Q Consensus 1442 ~~s~f 1446 (1455)
+...+
T Consensus 239 ~~~~~ 243 (251)
T PRK14244 239 PQSSK 243 (251)
T ss_pred CCChH
Confidence 65544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=368.36 Aligned_cols=223 Identities=23% Similarity=0.375 Sum_probs=185.7
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--Ch
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~~ 1289 (1455)
..|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 11 ~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 11 PQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 36999999999963 4699999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCC---CCChH----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~---~~~d~----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
..+|+.++|+||++.+|+.|+++|+.... ..+.+ ++.++++.+++.+. ++.........||||||||+
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgG~~qrv 163 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDE-----TSDRLKSPALSLSGGQQQRL 163 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcc-----hhhhhcCChhhCCHHHHHHH
Confidence 56788999999999999999999996421 11221 23334444433211 12334555668999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|||||+++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|+++++.++
T Consensus 164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999887668999999999999866 899999999999999999999876
Q ss_pred CCcHH
Q 000511 1442 ECSVF 1446 (1455)
Q Consensus 1442 ~~s~f 1446 (1455)
+...+
T Consensus 244 ~~~~~ 248 (258)
T PRK14268 244 PREKS 248 (258)
T ss_pred CCCHH
Confidence 54433
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=367.45 Aligned_cols=226 Identities=24% Similarity=0.406 Sum_probs=188.1
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~~~ 1290 (1455)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++++||+|.+|+.|+++|+.... ...+ +++.++++..++.+.+ +...+....+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-----KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-----HHHHhCChhhcCHHHHHHH
Confidence 6788999999999999999999997421 1111 2233344444432211 2335566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999999999987678999999999998765 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000511 1442 ECSVFSSFV 1450 (1455)
Q Consensus 1442 ~~s~f~~l~ 1450 (1455)
+...|...+
T Consensus 236 ~~~~~~~~~ 244 (250)
T PRK14262 236 PKNKLTEEY 244 (250)
T ss_pred CCChHHHHH
Confidence 544455433
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=367.72 Aligned_cols=221 Identities=24% Similarity=0.366 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~--i~~~ 1290 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 369999999999999999999999999999999999997 3 59999999999864 4556
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCC----CChHH----HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~----~~d~e----i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||+|.+|++|++||+.+... .++++ +.++++..++.+.+ .........+||||||||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-----KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhhhhCCcccCCHHHHHHH
Confidence 78899999999999999999999964321 12222 22233333332211 2334566678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+|++|||||++||.++...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhC
Confidence 9999999999999999999999999999999999987678999999999999875 899999999999999999999876
Q ss_pred CCcH
Q 000511 1442 ECSV 1445 (1455)
Q Consensus 1442 ~~s~ 1445 (1455)
+...
T Consensus 245 ~~~~ 248 (259)
T PRK14274 245 PDDQ 248 (259)
T ss_pred CCCH
Confidence 5443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=369.60 Aligned_cols=221 Identities=25% Similarity=0.361 Sum_probs=183.1
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH----hcc
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGR 1295 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l----R~~ 1295 (1455)
.++|++.+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 56688888864 469999999999999999999999999999999999999999999999999988776543 468
Q ss_pred cEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1296 FAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1296 i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
++|+||++.+|+ .|++||+.... .....+.. ....+.++.+|++..+.....+||||||||++||||++++
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999885 59999996421 11111111 1122334444665555666678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
|+||||||||++||..+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++++++...|.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 257 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYV 257 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHH
Confidence 99999999999999999999999998764 37999999999998865 899999999999999999999876654443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=369.58 Aligned_cols=219 Identities=27% Similarity=0.442 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~~ 1290 (1455)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 6999999999963 469999999999999999999999999999999999865 789999999999865 3445
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCC---C-C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~-~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||++.+|++|+++|+..... . . ++.+.++++..++.+. +....+....+||||||||+
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-----VKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-----hHHHHhcCcccCCHHHHHHH
Confidence 67889999999999999999999864311 1 1 1223333433333211 12334566778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999987667899999999998765 899999999999999999999876
Q ss_pred CC
Q 000511 1442 EC 1443 (1455)
Q Consensus 1442 ~~ 1443 (1455)
+.
T Consensus 254 ~~ 255 (268)
T PRK14248 254 PK 255 (268)
T ss_pred CC
Confidence 43
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=367.73 Aligned_cols=221 Identities=24% Similarity=0.363 Sum_probs=186.6
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CC
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~ 1288 (1455)
.-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 346999999999964 369999999999999999999999999999999999987 699999999999853 45
Q ss_pred hHHHhcccEEEeCCCCCCCCcHHHhcCcCC---CCChH-----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~gTIreNLdp~~---~~~d~-----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
...+|++++|+||+|.+|..|+++|+.+.. ..+++ .+.++++..++.+ ++....+..+..|||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-----ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-----hHHHHHhcCcccCCHHHHH
Confidence 567889999999999999999999997421 11221 1223333332221 2334456677789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
|++|||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+++|+++.+.. ||+|++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887778999999999999875 8999999999999999999998
Q ss_pred ccCC
Q 000511 1440 QDEC 1443 (1455)
Q Consensus 1440 ~~~~ 1443 (1455)
+++.
T Consensus 255 ~~~~ 258 (271)
T PRK14238 255 SNPS 258 (271)
T ss_pred cCCC
Confidence 7654
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=366.16 Aligned_cols=222 Identities=23% Similarity=0.367 Sum_probs=184.9
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC--C---CCceEEECCEeCCCC--C
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--P 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~i--~ 1288 (1455)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 469999999999999999999999999999999999986 4 689999999999753 3
Q ss_pred hHHHhcccEEEeCCCCCCC-CcHHHhcCcC----CCCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHH
Q 000511 1289 VRDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1359 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~-gTIreNLdp~----~~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQr 1359 (1455)
...+|++++|+||++.+|+ .|++||+... +..+. +++.++++.+++.+.+ +...+....+||+|||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-----KDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcCcCCHHHH
Confidence 4567889999999999998 5999999642 11111 1233333333332211 1234456678999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHH
Q 000511 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1360 Qrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eL 1438 (1455)
||++||||++++|++|||||||++||..+.+.+.+.|++..++.|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 899999999999999999999
Q ss_pred hccCCc
Q 000511 1439 LQDECS 1444 (1455)
Q Consensus 1439 l~~~~s 1444 (1455)
...+..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14256 235 FTTPEK 240 (252)
T ss_pred HhCCCc
Confidence 876543
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=377.98 Aligned_cols=222 Identities=20% Similarity=0.345 Sum_probs=182.7
Q ss_pred cEEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC----CCCceEEECCEeCCCCChHH
Q 000511 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~----~~~G~I~IdG~di~~i~~~~ 1291 (1455)
.++++|++++|+... ..+|+||||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 479999999997532 359999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ccEEEeCCCC--CCCC-cHHHhc----CcCCCCCh----HHHHHHHHHhcHHHHHHhCCCc---hhhhcCCCC
Q 000511 1292 LRG----RFAVVPQSPF--LFEG-SLRDNL----DPFHMNDD----LKIWSVLEKCHVKEEVEAVGLE---TFVKESGIS 1353 (1455)
Q Consensus 1292 lR~----~i~~VpQdp~--lf~g-TIreNL----dp~~~~~d----~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~ 1353 (1455)
+|+ ++++|||+|. +.+. |+.+|+ ........ +++.++|++ +||+ ...+.....
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~---------~gL~~~~~~l~~~p~~ 153 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQ---------VGIPDPASRLDVYPHQ 153 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------CCCCChHHHHhCCchh
Confidence 543 6999999995 4432 665554 22211111 223333443 4553 235566778
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hhCEEEEEeCCeEE
Q 000511 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLV 1430 (1455)
Q Consensus 1354 LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~iv 1430 (1455)
||||||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+|||+++.+. .||||+||++|+|+
T Consensus 154 LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 3789999999999985 59999999999999
Q ss_pred EeCChhHHhccCCcHHHH
Q 000511 1431 EQGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1431 e~G~p~eLl~~~~s~f~~ 1448 (1455)
|.|+++++++++...|.+
T Consensus 234 e~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 234 ETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred EECCHHHHhhCCCChHHH
Confidence 999999999877655544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=367.04 Aligned_cols=227 Identities=25% Similarity=0.388 Sum_probs=186.3
Q ss_pred cEEEEEEEEEecCC-------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 000511 1218 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~ 1290 (1455)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 35799999999999999999999999999999999999999999999999999887654
Q ss_pred H---HhcccEEEeCCCC--CC-CCcHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHH
Q 000511 1291 D---LRGRFAVVPQSPF--LF-EGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQR 1359 (1455)
Q Consensus 1291 ~---lR~~i~~VpQdp~--lf-~gTIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQr 1359 (1455)
. +|++++|+||+|. ++ ..|+++|+... .....++ ....+.+.++.+|++ ...+.....||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMVGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 3 6788999999983 44 36999998531 1111111 111233445555775 345666778999999
Q ss_pred HHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChh
Q 000511 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1436 (1455)
Q Consensus 1360 Qrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~ 1436 (1455)
||++||||++++|+||||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999987643 7899999999999975 8999999999999999999
Q ss_pred HHhccCCcHHHHH
Q 000511 1437 TLLQDECSVFSSF 1449 (1455)
Q Consensus 1437 eLl~~~~s~f~~l 1449 (1455)
++...++...+++
T Consensus 237 ~~~~~~~~~~~~~ 249 (265)
T TIGR02769 237 QLLSFKHPAGRNL 249 (265)
T ss_pred HHcCCCCHHHHHH
Confidence 9987443233334
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=380.59 Aligned_cols=222 Identities=27% Similarity=0.426 Sum_probs=189.6
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..++++|++++|+. .++|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 36999999999963 469999999999999999999999999999999999999999999999999988765 47789
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+||+|++.+|+. |++||+.+... .+..++.+ .+.+.++.+|++.........||||||||++|||||+++|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 99999975421 22222221 1234445557766666667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++..++...|-
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 9999999999999999999988877653 37899999999998765 899999999999999999999998876553
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=358.40 Aligned_cols=204 Identities=31% Similarity=0.469 Sum_probs=173.9
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 46899999975334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred eCCCC--CCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1300 PQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1300 pQdp~--lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
||+|. +++.|+++|+..... .++.+..+ ...+.++.+|++.........||||||||++|||||+++|++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99983 677899999965311 12211111 123344555776666667778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCe
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1428 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1428 (1455)
|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998764 47899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=364.05 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=186.5
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-Hhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~-lR~~i 1296 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999963 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCCC----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHMN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~~----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+++||++.+|++ |++||+...... +.++. +....+.++.+|++.........||||||||++||||++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 999999998885 999999754211 11111 12234556666887767777778999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999987754 48899999999987765 899999999999999999999764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=357.43 Aligned_cols=202 Identities=30% Similarity=0.463 Sum_probs=174.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .++|+|+||+|++| ++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998776 778999999
Q ss_pred EeCCCCCCCC-cHHHhcCcCC---CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||+|.+|.+ |++||+.... ..+ ++++.++++.. |++.........||+|||||++||||+++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELV---------NLGDRAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC---------CCHHHHhCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999986421 111 12334444444 44433444556799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
+|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999987667999999999999875 8999999999999865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=363.35 Aligned_cols=211 Identities=26% Similarity=0.404 Sum_probs=179.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-HhcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~-lR~~i~ 1297 (1455)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEeCCCCCCCC-cHHHhcCcCC-CC--ChHH-HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFH-MN--DDLK-IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~-~~--~d~e-i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||++.+|++ |+++|+.... .. .+++ ..++++..+ +++........+||||||||++||||++++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~--------~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP--------VLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH--------hHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999987 9999996432 11 1111 122222221 2444455666689999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999988653 7899999999999986 8999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=362.00 Aligned_cols=218 Identities=25% Similarity=0.399 Sum_probs=185.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC------CCChHHH
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII------NTPVRDL 1292 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~------~i~~~~l 1292 (1455)
++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+
T Consensus 3 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 789999999964 46999999999999999999999999999999999999999999999999874 1234567
Q ss_pred hcccEEEeCCCCCCCC-cHHHhcCcC--C--CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1293 RGRFAVVPQSPFLFEG-SLRDNLDPF--H--MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf~g-TIreNLdp~--~--~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
|++++|+||+|.+|++ |++||+..+ . ....++.. ....+.++.+|++...+....+||||||||++||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 8899999999999976 999999631 1 11222211 123455556678777777778999999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
++++|+|+||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 233 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQPQT 233 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCccc
Confidence 999999999999999999999999999998764 47999999999999875 89999999999999999999865433
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=369.66 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999633 35999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||+| .+|+.|+++|+.... ..+.++..+ ...+.++.+|+..........||+|||||++|||||+.+|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p 156 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEP 156 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 477889999996422 122222111 1123333345555555566789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
++|||||||++||+.+.+.+.+.+++..+ ++|||++||+++.+. .||||++|++|++++.|+++++++.
T Consensus 157 ~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 157 QVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999987653 789999999999985 5899999999999999999999864
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=368.47 Aligned_cols=217 Identities=28% Similarity=0.470 Sum_probs=185.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHHhcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-~~~lR~~i~ 1297 (1455)
++++|++++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 45999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEeCCCC--CCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp~--lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||+|. +++.|+++|+.+... .+..+..+ .+.+.++.+|++.........||+|||||++||||++++|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999985 567899999975421 12222111 1223344456766666677789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||||||++||+.+...+.+.|++.. +++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998754 48999999999999988999999999999999999998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=359.84 Aligned_cols=208 Identities=28% Similarity=0.441 Sum_probs=177.2
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEEE
Confidence 578999999964 46999999999999999999999999999999999999999999999999987643 567889999
Q ss_pred EeCCCCCCCC-cHHHhcCcCC---CCC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~---~~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||++.++++ |+++|+.... ..+ ++++.++++ .+|++.........||||||||++||||++.
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLD---------FVGLLEAADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH---------HcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999998875 9999996421 111 122333333 3455544445556899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHH
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eL 1438 (1455)
+|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||||++|++|++++.|+++++
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999987642 7899999999999876 899999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=365.21 Aligned_cols=220 Identities=27% Similarity=0.383 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceEEECCEeCCCC--Ch
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~i--~~ 1289 (1455)
+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 36899999999963 46999999999999999999999999999999999999997 69999999998653 45
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCCC----CCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~~----~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
..+|++++|+||+|.+|+.|++||+.+... ... +.+.++++..++++.+ ....+..+.+||+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-----KDNLHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 677899999999999999999999975321 111 2233344444443322 233556677899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++||||++++|++|||||||++||..+...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999887667999999999999887 69999999999999999999977
Q ss_pred cCC
Q 000511 1441 DEC 1443 (1455)
Q Consensus 1441 ~~~ 1443 (1455)
++.
T Consensus 236 ~~~ 238 (251)
T PRK14249 236 RPR 238 (251)
T ss_pred CCC
Confidence 543
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=362.69 Aligned_cols=217 Identities=24% Similarity=0.410 Sum_probs=182.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-Hhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~-lR~~i 1296 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .|+.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+|+||++.+|++ |+++|+..... .+..+..+. +.+.++.+ +++.........||+|||||++||||++++|+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999999985 99999975321 122222211 11222222 24333444556899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
||||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999999998764 48999999999997755 899999999999999999999753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=364.59 Aligned_cols=218 Identities=28% Similarity=0.410 Sum_probs=184.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~~~ 1290 (1455)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999999653 345
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCC---C-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||++.+|+.|+++|+.+... . +. +++.++++.+++.+.+ ....+.....||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-----KDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999974321 1 11 2233444444432211 2234556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|+++++..+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999987767899999999999876 899999999999999999999875
Q ss_pred C
Q 000511 1442 E 1442 (1455)
Q Consensus 1442 ~ 1442 (1455)
+
T Consensus 237 ~ 237 (251)
T PRK14270 237 P 237 (251)
T ss_pred C
Confidence 4
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=367.29 Aligned_cols=221 Identities=24% Similarity=0.355 Sum_probs=186.5
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~~ 1289 (1455)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 4699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
..+|++++|+||+|.+|+.|++||+.+.. ...+ +.+.++++.+++++.+ ....+..+..||+|||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-----KDKLNKSALGLSGGQQQR 158 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67888999999999999999999996421 1121 2334555555554322 223445566899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEe-----CCeEEEeCCh
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-----HGHLVEQGNP 1435 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-----~G~ive~G~p 1435 (1455)
++||||++++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||++++|+ +|++++.|++
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987677999999999999876 89999997 5999999999
Q ss_pred hHHhccCCc
Q 000511 1436 QTLLQDECS 1444 (1455)
Q Consensus 1436 ~eLl~~~~s 1444 (1455)
+++.+++..
T Consensus 239 ~~~~~~~~~ 247 (259)
T PRK14260 239 TQIFSNPLD 247 (259)
T ss_pred HHHhcCCCC
Confidence 999876543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=370.57 Aligned_cols=219 Identities=28% Similarity=0.486 Sum_probs=184.3
Q ss_pred cEEEEEEEEEecCCC---CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChH
Q 000511 1218 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~~~ 1290 (1455)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997422 4699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcccEEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000511 1291 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1364 (1455)
..|++++|+||+| .+|+.|++||+.+.. ..+.++..+ ...+.++.+|++. .......+||||||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 6788999999998 578889999996421 122222211 1234455557763 4566677899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||++++|++|||||||++||+++.+.+.+.|++.. ++.|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998764 47899999999999864 899999999999999999998764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=367.25 Aligned_cols=221 Identities=29% Similarity=0.410 Sum_probs=187.1
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CC
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TP 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~ 1288 (1455)
.+.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 457999999999963 3699999999999999999999999999999999999984 89999999999875 44
Q ss_pred hHHHhcccEEEeCCCCCCCCcHHHhcCcCCC----CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~----~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
...+|++++|+||++.+|++|+++|+.+... .. ++++.++++.+++.+.+ .+..+..+.+||+||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-----KDRLHENAFGLSGGQQQ 175 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-----HHHhhCCcccCCHHHHH
Confidence 5678899999999999999999999964311 11 12244444444433221 13455667789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
|++||||++++|+|+||||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999999987678999999999999865 8999999999999999999998
Q ss_pred ccCC
Q 000511 1440 QDEC 1443 (1455)
Q Consensus 1440 ~~~~ 1443 (1455)
+++.
T Consensus 256 ~~~~ 259 (272)
T PRK14236 256 TSPA 259 (272)
T ss_pred cCCC
Confidence 7543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=373.35 Aligned_cols=226 Identities=25% Similarity=0.402 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecC--CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC---CceEEECCEeCCCCChHHH
Q 000511 1218 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINTPVRDL 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~---~G~I~IdG~di~~i~~~~l 1292 (1455)
.++++|++++|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 6899999999963 2246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cccEEEeCCC--CCCC-CcHHHhcC----cCCCCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCCCCCChhH
Q 000511 1293 R----GRFAVVPQSP--FLFE-GSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQ 1358 (1455)
Q Consensus 1293 R----~~i~~VpQdp--~lf~-gTIreNLd----p~~~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~LSgGQ 1358 (1455)
| ++|+|||||| .+++ -|+.+|+. .....+.++..+ ...+.++.+|++ ..++..+..|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~-----~~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE-----ESVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 4 4799999999 4555 37777763 222222222111 112223333553 23466777899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
|||++|||||+.+|++||+|||||+||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 7899999999999975 899999999999999999
Q ss_pred hHHhccCCcHHHH
Q 000511 1436 QTLLQDECSVFSS 1448 (1455)
Q Consensus 1436 ~eLl~~~~s~f~~ 1448 (1455)
+++.+++...|.+
T Consensus 247 ~~i~~~p~~pyt~ 259 (330)
T PRK09473 247 RDVFYQPSHPYSI 259 (330)
T ss_pred HHHHhCCCCHHHH
Confidence 9999877655555
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=361.51 Aligned_cols=211 Identities=26% Similarity=0.413 Sum_probs=176.2
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHHh
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~---~~lR 1293 (1455)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 369999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cccEEEeCCC--CCC-CCcHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000511 1294 GRFAVVPQSP--FLF-EGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1294 ~~i~~VpQdp--~lf-~gTIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1365 (1455)
++++|+||+| .++ ..|+++|+... ....+++..+ .+ ..+.++.+|++ ...+....+||||||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK---EA-VLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHH---HH-HHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 8999999999 344 46999998532 1111111111 10 12344555774 456777788999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hhCEEEEEeCCeEEEeC
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 1433 (1455)
||++++|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999988754 789999999999988 48999999999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=364.76 Aligned_cols=222 Identities=23% Similarity=0.388 Sum_probs=188.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~~ 1290 (1455)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999963 469999999999999999999999999999999999875 489999999999875 3466
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCC---CC-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||+|.+|++|+++|+.... .. +. +++.++++.+++.+.+. ...+..+.+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-----DKLDKSALGLSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-----HHHhCCcccCCHHHHHHH
Confidence 7899999999999999999999997431 11 11 23444556666544332 223555678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999988778999999999998877 799999999999999999999877
Q ss_pred CCcHH
Q 000511 1442 ECSVF 1446 (1455)
Q Consensus 1442 ~~s~f 1446 (1455)
+.+.+
T Consensus 236 ~~~~~ 240 (250)
T PRK14266 236 PKDKR 240 (250)
T ss_pred CCChH
Confidence 65544
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=365.25 Aligned_cols=226 Identities=25% Similarity=0.389 Sum_probs=188.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCC--ChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i--~~~ 1290 (1455)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5899999999963 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCCC----C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN----D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~~----~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
..|++++|+||+|.+|++|++||+.+.... . ++++.++++.+++.+. +.+..+..+.+||+|||||+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-----VKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-----hHHHhhcChhhCCHHHHHHH
Confidence 778899999999999999999999753211 1 1123334444433221 22345667778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++.+|+++||||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhC
Confidence 9999999999999999999999999999999999987667999999999999975 899999999999999999999876
Q ss_pred CCcHHHHHH
Q 000511 1442 ECSVFSSFV 1450 (1455)
Q Consensus 1442 ~~s~f~~l~ 1450 (1455)
+...+.+.+
T Consensus 239 ~~~~~~~~~ 247 (253)
T PRK14261 239 PHEELTENY 247 (253)
T ss_pred CCcHHHHHH
Confidence 544444433
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=355.36 Aligned_cols=198 Identities=27% Similarity=0.414 Sum_probs=168.7
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred eCCC--CCCCCcHHHhcCcCCC-C--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1300 PQSP--FLFEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1300 pQdp--~lf~gTIreNLdp~~~-~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
||+| .+|+.|++||+..... . .++++.++++.+ |++.........||||||||++||||++++|++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL---------DLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc---------CCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 9998 4678899999975422 1 123444455544 444444455567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhh-hCEEEEEeCCeEE
Q 000511 1375 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~-~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1430 (1455)
|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999876 357899999999999875 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=368.64 Aligned_cols=220 Identities=26% Similarity=0.434 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCC----CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC-hHHH
Q 000511 1218 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDL 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~-~~~l 1292 (1455)
.++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999742 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcccEEEeCCCC--CCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1293 RGRFAVVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1293 R~~i~~VpQdp~--lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
|++++|+||+|. +|..|+++|+.+... .+..+..+ .+.+.++.+|++.........||+|||||++||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lara 158 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGI 158 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 899999999984 676799999965321 12221111 12233333456555556667899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
++++|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||||++|++|++++.|+++++.++.
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKEV 235 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcCh
Confidence 999999999999999999999999999998764 389999999999999889999999999999999999997643
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.05 Aligned_cols=219 Identities=24% Similarity=0.361 Sum_probs=186.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~~ 1290 (1455)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++. |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999964 369999999999999999999999999999999999986 479999999999853 4566
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCC---C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1455)
.+|++++++||++.+|+.|+++|+.+... . .++++.++++.+++++.+. ...+..+.+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHH
Confidence 78899999999999998999999975321 1 1233445556666544332 23455667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEe---------CCeEEEeCC
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVEQGN 1434 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~G~ive~G~ 1434 (1455)
|||++++|+||||||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||||++|+ +|++++.|+
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999987767899999999998865 79999998 899999999
Q ss_pred hhHHhccCC
Q 000511 1435 PQTLLQDEC 1443 (1455)
Q Consensus 1435 p~eLl~~~~ 1443 (1455)
++|+.+++.
T Consensus 243 ~~~~~~~~~ 251 (264)
T PRK14243 243 TEKIFNSPQ 251 (264)
T ss_pred HHHHHhCCC
Confidence 999987654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=362.76 Aligned_cols=219 Identities=28% Similarity=0.417 Sum_probs=186.5
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCCC-hHH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTP-VRD 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~-~~~ 1291 (1455)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 6899999999963 4699999999999999999999999999999999999986 6999999999998763 456
Q ss_pred HhcccEEEeCCCCCCCCcHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000511 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1292 lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQrl~ 1363 (1455)
+|++++|+||+|.+|+.|+++|+.... ..+++++.+.. .+.++.+|++ +.+.....+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999997431 12333332211 2233333443 3456667789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
||||++++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999887667899999999999876 8999999999999999999998765
Q ss_pred C
Q 000511 1443 C 1443 (1455)
Q Consensus 1443 ~ 1443 (1455)
.
T Consensus 254 ~ 254 (276)
T PRK14271 254 K 254 (276)
T ss_pred C
Confidence 4
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=373.97 Aligned_cols=216 Identities=28% Similarity=0.397 Sum_probs=183.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
|+||++.+++ .|++||+..+. ..++.+..+. +.+.++.+|++.........||||||||++|||||+++|+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 59999996321 1222222221 1223333466555555566899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998764 47899999999999875 899999999999999999999754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=367.89 Aligned_cols=220 Identities=25% Similarity=0.409 Sum_probs=184.7
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~--i~~ 1289 (1455)
..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 46899999999964 369999999999999999999999999999999999997 689999999999865 345
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCCC---C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1455)
..+|++++|+||++.+|++|+++|+..... . .++++.++++..++.+.+ ....+....+||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-----KDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-----HHHHhCCcccCCHHHHHHHH
Confidence 677899999999999999999999964211 1 122344444444332111 12345666789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEE-EEeCCeEEEeCChhHHhcc
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEIL-ILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~-vl~~G~ive~G~p~eLl~~ 1441 (1455)
|||||+++|+||||||||++||.++.+.+.+.|++..+++|||++||+++.+.. |||++ +|++|+|++.|+++++.++
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999988777899999999999876 89975 5799999999999999875
Q ss_pred CC
Q 000511 1442 EC 1443 (1455)
Q Consensus 1442 ~~ 1443 (1455)
+.
T Consensus 271 ~~ 272 (285)
T PRK14254 271 PE 272 (285)
T ss_pred cC
Confidence 43
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=359.64 Aligned_cols=207 Identities=30% Similarity=0.381 Sum_probs=173.5
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+|+||+|.+|+ .|++||+..... ....+. .....+.++.+|++........+||||||||++||||++++|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 699999864311 111111 111233444456665566666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEe--CCeEEEeCCh
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVEQGNP 1435 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~p 1435 (1455)
+++||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|+++|.++.
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999998763 37899999999998765 89999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.77 Aligned_cols=223 Identities=23% Similarity=0.343 Sum_probs=190.3
Q ss_pred CCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCC--
Q 000511 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-- 1285 (1455)
Q Consensus 1213 wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~-- 1285 (1455)
-|..+.|+++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 456788999999999964 3699999999999999999999999999999999999975 7999999998874
Q ss_pred --CCChHHHhcccEEEeCCCCCCCCcHHHhcCcCCC---C-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCC
Q 000511 1286 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1355 (1455)
Q Consensus 1286 --~i~~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1355 (1455)
......+|++++|+||+|.+|++|++||+..... . .++++.++++.+++.+ ++....+.....||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS 163 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-----EVKDRLGDLAFNLS 163 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-----hhhHHHhCCcccCC
Confidence 3345678899999999999999999999964311 1 1244555666555432 22344556667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1356 gGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
+|||||++||||++++|+++||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987667899999999999975 89999999999999999
Q ss_pred hhHHhccC
Q 000511 1435 PQTLLQDE 1442 (1455)
Q Consensus 1435 p~eLl~~~ 1442 (1455)
++++..++
T Consensus 244 ~~~~~~~~ 251 (265)
T PRK14252 244 TDTIFIKP 251 (265)
T ss_pred HHHHHhCC
Confidence 99998654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=356.66 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=174.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999999776543 568999
Q ss_pred EeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|. .|++||+.... ....++..+ .+.+.++.+|++.........||||||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 59999996531 112222111 122334445666666666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
++|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998764 37899999999999876 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=359.42 Aligned_cols=215 Identities=28% Similarity=0.410 Sum_probs=182.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 369999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||+|.+|++ |++||+..... .+..+. ...+.+.++.+|+.........+||+||+||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999964321 111111 11223445555665445556678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
+||||||++||.++.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++++.+
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~ 222 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHP 222 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCC
Confidence 999999999999999999999987643 7999999999999866 8999999999999999999998654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=379.28 Aligned_cols=208 Identities=27% Similarity=0.402 Sum_probs=176.5
Q ss_pred cceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH----hcccEEEeCCCCCCCC-
Q 000511 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG- 1308 (1455)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l----R~~i~~VpQdp~lf~g- 1308 (1455)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 47999999999999999999999999999999999999999999999999998877654 4689999999999975
Q ss_pred cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCC
Q 000511 1309 SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385 (1455)
Q Consensus 1309 TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD 1385 (1455)
|++||+.+... .+.++..+ ...+.++.+||+........+||||||||++|||||+.+|+|||||||||+||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 99999975321 12222111 12334444567666666677899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1386 AQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1386 ~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
+.+.+.+++.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+|++++.++...|
T Consensus 197 ~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999998764 48899999999999865 89999999999999999999988765433
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=361.66 Aligned_cols=225 Identities=23% Similarity=0.386 Sum_probs=188.1
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEe-----CCCCChHH-
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~d-----i~~i~~~~- 1291 (1455)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 469999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---HhcccEEEeCCCC--CCC-CcHHHhcCc----CCCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000511 1292 ---LRGRFAVVPQSPF--LFE-GSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1292 ---lR~~i~~VpQdp~--lf~-gTIreNLdp----~~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1360 (1455)
.|+.++|+||++. ++. .|+++|+.. .......++.+ ...+.++.+|++ +..+..+.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 3567999999984 343 488888742 11111112211 234566666886 4677888899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhH
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~e 1437 (1455)
|++||||++++|+||||||||++||+++.+.+.+.|++..+ +.|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999975 89999999999999999999
Q ss_pred HhccCCcHHHHH
Q 000511 1438 LLQDECSVFSSF 1449 (1455)
Q Consensus 1438 Ll~~~~s~f~~l 1449 (1455)
+..++...|.+.
T Consensus 239 ~~~~~~~~~~~~ 250 (258)
T PRK11701 239 VLDDPQHPYTQL 250 (258)
T ss_pred HhcCCCCHHHHH
Confidence 987665455443
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=375.61 Aligned_cols=216 Identities=28% Similarity=0.425 Sum_probs=184.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
|+||++.++. .|++||+..+.. .+..+..+. ..+.++.+|++........+||+|||||++|||||+.+|+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999875 599999975321 122222211 1233333466555555556899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999998864 48999999999999976 999999999999999999999764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=371.95 Aligned_cols=215 Identities=27% Similarity=0.386 Sum_probs=187.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||+|.+|++ |++||+.+... ...++..+ ...+.++.+|++...+....+||+|||||++||||++++|++
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 99999964321 12222111 123445555777767777778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|+|||||++||+++.+.+++.|++..+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999987778999999999999876 899999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=356.24 Aligned_cols=202 Identities=28% Similarity=0.411 Sum_probs=174.0
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|+ .|++||+.+.. ..+++++.++++..++. .........||||||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK---------DSAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH---------HHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998875 69999996532 12344555555555544 334445567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
+||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998764 47899999999999875 8999999999999865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=364.46 Aligned_cols=216 Identities=25% Similarity=0.403 Sum_probs=184.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCC-----CC--hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHM-----ND--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~-----~~--d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||++.++++ |+++|+++... .. +.+. .....+.++.+|++.........||||||||++||||+++
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 155 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQ 155 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhc
Confidence 9999998877 99999975311 00 0110 1112223333456555566677899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 156 DTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 999999999999999999999999998764 47899999999999875 899999999999999999998753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=366.03 Aligned_cols=213 Identities=27% Similarity=0.402 Sum_probs=183.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCC--------C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~--------~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1455)
|+||++.++.+ |+++|+..... . .++++.++++.+ |++........+||||||||++||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV---------GLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc---------CCHHHhcCCcccCCHHHHHHHHHH
Confidence 99999877665 99999974311 0 112334444444 444444445568999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
||++.+|+||||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~~ 238 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRG 238 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcCH
Confidence 99999999999999999999999999999998764 37999999999999865 899999999999999999998753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=342.59 Aligned_cols=172 Identities=35% Similarity=0.591 Sum_probs=162.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+....++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
++|+|.+|++|++||+ ||+|||||++||||++++|++||||
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~~lllD 121 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999998 9999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEEeCCeE
Q 000511 1379 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHL 1429 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1429 (1455)
|||++||+.+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 122 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999998764 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=356.60 Aligned_cols=205 Identities=31% Similarity=0.391 Sum_probs=171.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh---HHHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~---~~lR~~ 1295 (1455)
++++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987754 357889
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
++++||+|.+|++ |++||+.... ..+.++..+ .+.+.++.+|++........+||+|||||++||||++++
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 154 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNS 154 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcC
Confidence 9999999999985 9999996431 112111111 122333444555555555668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeE
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1429 (1455)
|+|+||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 155 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 155 PTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998763 57999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=365.51 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~--i~~~~lR~~i 1296 (1455)
|+++||+++|+. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 3469999999999999999999999999999999999999999999999999853 3345678999
Q ss_pred EEEeCCC--CCCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp--~lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||+| .+|+.|++||+.... ..+.++..+ ...+.++.+|++.........||||||||++||||++++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998 478899999996421 122222111 122334444555444555668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
|++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++++.
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999998764 47899999999999875 899999999999999999998764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=366.18 Aligned_cols=217 Identities=24% Similarity=0.352 Sum_probs=181.2
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC--CCChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~--~i~~~~lR~~i 1296 (1455)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 34456778899
Q ss_pred EEEeCCCC--CCCCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSPF--LFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp~--lf~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||+|. ++..|+.+|+.... ..++++..+ .+.+.++.+|++.........||||||||++|||||+.+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999985 57789999986421 112222211 112233333554444555668999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999998764 47899999999999865 8999999999999999999987643
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=362.71 Aligned_cols=220 Identities=23% Similarity=0.366 Sum_probs=186.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i 1296 (1455)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 469999999999999999999999999999999999999999999999999988876554 4569
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC-----------CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM-----------ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~-----------~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
+|+||+|.+|++ |+++|+.+... .. +.+..+. .....+.++.+|++...+....+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 999999999986 99999975311 00 0000011 112334555568877777888899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhH
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~e 1437 (1455)
|++||||++++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999876 89999999999999999999
Q ss_pred Hhcc
Q 000511 1438 LLQD 1441 (1455)
Q Consensus 1438 Ll~~ 1441 (1455)
+.++
T Consensus 241 ~~~~ 244 (255)
T PRK11300 241 IRNN 244 (255)
T ss_pred HhhC
Confidence 8764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=362.38 Aligned_cols=224 Identities=26% Similarity=0.410 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~--i~~~ 1290 (1455)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999875 3455
Q ss_pred HHhcccEEEeCCCCCCCC-cHHHhcCcCC---C-CChHHHHH----HHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M-NDDLKIWS----VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~g-TIreNLdp~~---~-~~d~ei~~----aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
.+|++++|+||+|.+|++ |++||+.... . ..+++..+ .++..++++. +.........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-----VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-----hhhhhcCCcccCCHHHHHH
Confidence 778899999999999885 9999996321 1 12222222 2233333221 1222344456899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++||||++++|+||||||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|+++++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987668999999999999986 89999999999999999999988
Q ss_pred cCCcHHHH
Q 000511 1441 DECSVFSS 1448 (1455)
Q Consensus 1441 ~~~s~f~~ 1448 (1455)
++...+.+
T Consensus 237 ~~~~~~~~ 244 (252)
T PRK14272 237 NPRDERTE 244 (252)
T ss_pred CcCcHHHH
Confidence 76554533
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=363.29 Aligned_cols=219 Identities=24% Similarity=0.414 Sum_probs=182.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~~~ 1290 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999854 4456
Q ss_pred HHhcccEEEeCCCCCCC-CcHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~-gTIreNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
.+|+.++++||++.+|+ .|+++|+.... ..+. +++.++++.+++.+.+ +........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-----KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 78899999999999987 49999986421 1111 2233344444332211 234456667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEe------CCeEEEeCC
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD------HGHLVEQGN 1434 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~------~G~ive~G~ 1434 (1455)
++||||++++|+++||||||++||..+...+.+.|++..+++|||+|||+++.+.. ||||++|+ +|+|++.|+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999887667899999999999865 89999996 899999999
Q ss_pred hhHHhccCC
Q 000511 1435 PQTLLQDEC 1443 (1455)
Q Consensus 1435 p~eLl~~~~ 1443 (1455)
+++++.++.
T Consensus 237 ~~~~~~~~~ 245 (258)
T PRK14241 237 TEKIFSNPT 245 (258)
T ss_pred HHHHHhCcC
Confidence 999987543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=375.80 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=174.3
Q ss_pred cceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCE----eCCCCChHHHh----cccEEEeCCCCC
Q 000511 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL----NIINTPVRDLR----GRFAVVPQSPFL 1305 (1455)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~----di~~i~~~~lR----~~i~~VpQdp~l 1305 (1455)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||. |+...+...+| ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 67777655543 579999999999
Q ss_pred CC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000511 1306 FE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381 (1455)
Q Consensus 1306 f~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaT 1381 (1455)
|+ .|++||+.++.. .+.++. +....+.++.+||+........+||||||||++|||||+++|+||||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~-----~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAER-----RKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 98 699999975321 122211 112233444446665555666689999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1382 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1382 S~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
|+||+.+.+.+++.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|++++.++...|
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~ 260 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHH
Confidence 99999999999999987643 7999999999999754 89999999999999999999997765443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=361.38 Aligned_cols=219 Identities=25% Similarity=0.383 Sum_probs=185.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCC-CCChHH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-NTPVRD 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~-~i~~~~ 1291 (1455)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999986 456677
Q ss_pred HhcccEEEeCCCCCCCCcHHHhcCcCC---CC-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000511 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1292 lR~~i~~VpQdp~lf~gTIreNLdp~~---~~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1455)
+|+.++|+||+|.+|++|+++|+.... .. .+ +++.++++.+++.+. +....+.....||||||||++
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-----VKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-----hhHHhhcCcccCCHHHHHHHH
Confidence 889999999999999999999997431 11 11 122333444443321 123445566789999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
||||++.+|+||||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.+++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 235 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999999987667999999999999886 8999999999999999999997654
Q ss_pred C
Q 000511 1443 C 1443 (1455)
Q Consensus 1443 ~ 1443 (1455)
.
T Consensus 236 ~ 236 (249)
T PRK14253 236 K 236 (249)
T ss_pred C
Confidence 3
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=367.22 Aligned_cols=225 Identities=24% Similarity=0.345 Sum_probs=185.9
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--C
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i--~ 1288 (1455)
...|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346899999999964 359999999999999999999999999999999999865 4999999999998643 3
Q ss_pred hHHHhcccEEEeCCCCCCCCcHHHhcCcCCC---C-Ch----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000511 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~-~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1455)
...+|++++|+||+|.+|++|++||+..... . +. +++.++++..++.+. +..........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-----VSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-----hhhHhhCChhhCCHHHHH
Confidence 3467889999999999999999999974311 1 11 223344444433211 122344556689999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
|++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+++|+++.+.+ ||||++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999876 8999999999999999999998
Q ss_pred ccCCcHHH
Q 000511 1440 QDECSVFS 1447 (1455)
Q Consensus 1440 ~~~~s~f~ 1447 (1455)
+++...+.
T Consensus 270 ~~~~~~~~ 277 (286)
T PRK14275 270 TNPKDRMT 277 (286)
T ss_pred hCCCcHHH
Confidence 76554343
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=361.86 Aligned_cols=223 Identities=24% Similarity=0.342 Sum_probs=188.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~~~ 1290 (1455)
.+.+++.+++|+. .++|+|+||+|+|||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 4699999999999999999999999999999999999986 79999999999864 3445
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCCC------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~~------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1455)
.+|++++|+||+|.+|..|++||+.+.... .++++.++++.+++.+.+. ...++...+||+|||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-----DKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHH
Confidence 678899999999999999999999754211 1234555666655533221 23445667899999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEe--------CCeEEEeCCh
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD--------HGHLVEQGNP 1435 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~--------~G~ive~G~p 1435 (1455)
|||++++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999988778899999999998875 89999996 8999999999
Q ss_pred hHHhccCCcHHH
Q 000511 1436 QTLLQDECSVFS 1447 (1455)
Q Consensus 1436 ~eLl~~~~s~f~ 1447 (1455)
+++++++...+.
T Consensus 241 ~~~~~~~~~~~~ 252 (261)
T PRK14263 241 AQIFQNPREQLT 252 (261)
T ss_pred HHHHhCCCcHHH
Confidence 999876543343
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=369.92 Aligned_cols=220 Identities=24% Similarity=0.418 Sum_probs=185.6
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-----CCCceEEECCEeCCCC--C
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-----~~~G~I~IdG~di~~i--~ 1288 (1455)
+..|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999964 469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHHHhcccEEEeCCCCCCCCcHHHhcCcCCC---------------C-----ChHHHHHHHHHhcHHHHHHhCCCchhhh
Q 000511 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---------------N-----DDLKIWSVLEKCHVKEEVEAVGLETFVK 1348 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---------------~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~ 1348 (1455)
...+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+ +++...+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~ 195 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-----EVNDRLD 195 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-----hhhHHhc
Confidence 5678899999999999999999999974211 0 0122334444443322 1234556
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEE-EEEeC
Q 000511 1349 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEI-LILDH 1426 (1455)
Q Consensus 1349 e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI-~vl~~ 1426 (1455)
....+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+| ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 667789999999999999999999999999999999999999999999988777899999999999876 8997 56799
Q ss_pred CeEEEeCChhHHhccC
Q 000511 1427 GHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1427 G~ive~G~p~eLl~~~ 1442 (1455)
|++++.|+++++.+++
T Consensus 276 G~i~~~g~~~~~~~~~ 291 (305)
T PRK14264 276 GELVEYDDTDKIFENP 291 (305)
T ss_pred CEEEEeCCHHHHHhCc
Confidence 9999999999998654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=361.12 Aligned_cols=213 Identities=27% Similarity=0.392 Sum_probs=183.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEeCCCCC-CCCcHHHhcCcCCC-C--C----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1298 VVPQSPFL-FEGSLRDNLDPFHM-N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1298 ~VpQdp~l-f~gTIreNLdp~~~-~--~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
|+||++.+ ++.|++||+..... . + ++++.+ .++.+|++.........||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAA---------ALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHH---------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 56799999965321 1 1 112233 333345655555666789999999999999999
Q ss_pred ------cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhc
Q 000511 1370 ------KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1370 ------r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++|++|||||||++||+++.+.+.+.|++.. ++.|||++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 5999999999999999999999999998764 4789999999999987 489999999999999999999876
Q ss_pred c
Q 000511 1441 D 1441 (1455)
Q Consensus 1441 ~ 1441 (1455)
.
T Consensus 231 ~ 231 (258)
T PRK13548 231 P 231 (258)
T ss_pred h
Confidence 3
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=342.15 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=171.9
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
|+++|+++.|.. ..+++|+||+|++||+++++|||||||||+|++|.+.++|++|+|.++|
T Consensus 2 I~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 2 IEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred ceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 688999999862 3359999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCC-cCHHHHhccCC---CCCHH----HHHHHHHHhcchH-HHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 SIAYVPQVPWILS-GTIRDNILFGK---NYDPQ----SYSETLKACTLDV-DISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~-~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~-di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
+||||-|+.-||. .||.|||..-. .++++ +.++.++..+|+. +. .......|||||+|||.
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVG 145 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHH
Confidence 6999999999885 59999998643 35654 4556666677764 22 23455699999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccc-cccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
+||||..+|+|+|+||||+||||-+.+.+-+....-...-++|+|+|||+++. ++-||||.+|++|+|+..++++++..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999998887766332223347899999999987 45699999999999999999999976
Q ss_pred cc
Q 000511 819 SL 820 (1455)
Q Consensus 819 ~~ 820 (1455)
+.
T Consensus 226 ~P 227 (309)
T COG1125 226 NP 227 (309)
T ss_pred Cc
Confidence 53
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=363.47 Aligned_cols=218 Identities=22% Similarity=0.342 Sum_probs=185.9
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
-.|+++||+++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999964 4699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCC-CC----C--hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFH-MN----D--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~-~~----~--d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
+|+||++.+|. .|+++|+.+.. .. . .++ ......+.++.+|++.........||||||||++||||+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral 158 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKE-----DEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVL 158 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHH-----HHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHH
Confidence 99999998875 59999997531 10 0 010 011122333444665555666778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+++|++|||||||++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...
T Consensus 159 ~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (265)
T PRK10253 159 AQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTA 234 (265)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhhH
Confidence 999999999999999999999999999987643 7899999999998866 899999999999999999998753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=359.10 Aligned_cols=204 Identities=28% Similarity=0.375 Sum_probs=175.7
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 45999999999964 46999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+|+||++.+|+ .|++||+.+... ..++++.++++ .+|++........+||||||||++|||||+++|++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~---------~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA---------AVGLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHH---------HcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 599999975421 11233333343 44565556666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChh
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1436 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~ 1436 (1455)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999998763 37899999999999865 8999999999999988754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=363.81 Aligned_cols=221 Identities=25% Similarity=0.364 Sum_probs=186.6
Q ss_pred CccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCC--CC
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TP 1288 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~--i~ 1288 (1455)
.-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 18 ~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 18 HSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 347999999999964 3699999999999999999999999999999999999863 69999999999864 34
Q ss_pred hHHHhcccEEEeCCCCCCCCcHHHhcCcCCC---C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lf~gTIreNLdp~~~---~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
...+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+.+ ..........||||||||+
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-----KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-----HHHhcCCcccCCHHHHHHH
Confidence 4567899999999999998999999965321 1 123344455555543322 2234455678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEe---------CCeEEEe
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVEQ 1432 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~---------~G~ive~ 1432 (1455)
+|||||+++|++|||||||++||..+.+.+.+.|++..+++|||+|+|+++.+.. ||||++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999988778999999999999865 89999997 8999999
Q ss_pred CChhHHhccCC
Q 000511 1433 GNPQTLLQDEC 1443 (1455)
Q Consensus 1433 G~p~eLl~~~~ 1443 (1455)
|+++++..++.
T Consensus 251 g~~~~~~~~~~ 261 (274)
T PRK14265 251 SPTEQMFGSPQ 261 (274)
T ss_pred CCHHHHHhCCC
Confidence 99999987654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=356.36 Aligned_cols=216 Identities=28% Similarity=0.416 Sum_probs=183.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .++++|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 578999999964 369999999999999999999999999999999999999999999999999987664 3678999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|.+ |+++|+.+... .+.... .....+.++.+|++........+||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEI-----KERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999976 99999964211 111111 11123344445676666666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
+||||||++||..+.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++.+.+.
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCc
Confidence 999999999999999999999987643 7999999999999876 89999999999999999999987553
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=354.24 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=174.0
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 46789999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|++ |++||+..... .+..+. ...+.+.++.+|++........+||||||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999876 99999864321 111111 11234455555777666777778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
+||||||++||+.+.+.+.+.|++.. +++|||+++|+++.+.. ||+|++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998764 47899999999999876 8999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=361.44 Aligned_cols=221 Identities=25% Similarity=0.369 Sum_probs=186.2
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC-----CceEEECCEeCCC--CCh
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPV 1289 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~-----~G~I~IdG~di~~--i~~ 1289 (1455)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 36999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcccEEEeCCCCCCCCcHHHhcCcCC----CCCh----HHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~gTIreNLdp~~----~~~d----~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1455)
..+|+.++++||++.+|+.|++||+.... ..++ +++.++++.+++.+.+ +...+.....||||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-----KHKIHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67889999999999999999999996431 1121 2234445555443322 223455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeC-----CeEEEeC
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH-----GHLVEQG 1433 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~-----G~ive~G 1433 (1455)
++||||++++|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++.|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 999999999999999999999999999999999998742 48999999999999875 799999999 9999999
Q ss_pred ChhHHhccCCc
Q 000511 1434 NPQTLLQDECS 1444 (1455)
Q Consensus 1434 ~p~eLl~~~~s 1444 (1455)
+|+++.+++..
T Consensus 239 ~~~~~~~~~~~ 249 (261)
T PRK14258 239 LTKKIFNSPHD 249 (261)
T ss_pred CHHHHHhCCCC
Confidence 99999876654
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=355.25 Aligned_cols=211 Identities=24% Similarity=0.318 Sum_probs=175.9
Q ss_pred ccEEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---
Q 000511 1217 GLIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1291 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~--- 1291 (1455)
..|+++|++++|+++. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 3699999999997532 35999999999999999999999999999999999999999999999999998887654
Q ss_pred H-hcccEEEeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000511 1292 L-RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1455)
Q Consensus 1292 l-R~~i~~VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1455)
. +++++++||+|.+|++ |++||+.... .....+. +..+.+.++.+|++.........||+|||||++|||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~ 159 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALAR 159 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHH
Confidence 2 3679999999999885 9999986421 1111111 111233344445555555556689999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEEEe
Q 000511 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432 (1455)
Q Consensus 1367 AlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1432 (1455)
||+++|++|||||||++||+++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999998764 27899999999999988999999999999874
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=360.22 Aligned_cols=225 Identities=24% Similarity=0.370 Sum_probs=185.1
Q ss_pred cEEEEEEEEEecCC-------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 000511 1218 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~ 1290 (1455)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 24699999999999999999999999999999999999999999999999999766666
Q ss_pred HHhcccEEEeCCCC--CCCC-cHHHhcCcC---C-CCC----hHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhH
Q 000511 1291 DLRGRFAVVPQSPF--LFEG-SLRDNLDPF---H-MND----DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1358 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~--lf~g-TIreNLdp~---~-~~~----d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQ 1358 (1455)
..|++++|+||+|. +++. |+.+|+... + ... ++++.++++. +|++. .......+||+||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---------~~l~~~~~~~~~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQ---------VGLLPDHASYYPHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH---------cCCChHHHhcCchhcCHHH
Confidence 66778999999985 4544 888887531 1 111 1223334444 45532 2333446899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
|||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999998864 37899999999999987 899999999999999999
Q ss_pred hHHhccCC-cHHHHHHH
Q 000511 1436 QTLLQDEC-SVFSSFVR 1451 (1455)
Q Consensus 1436 ~eLl~~~~-s~f~~l~~ 1451 (1455)
+++.+++. ..+++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 235 ADVLASPLHELTKRLIA 251 (267)
T ss_pred HHHhcCCCCHHHHHHHH
Confidence 99987653 34556665
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=372.44 Aligned_cols=226 Identities=21% Similarity=0.325 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecC--CCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC----CCCceEEECCEeCCCCChHH
Q 000511 1218 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~----~~~G~I~IdG~di~~i~~~~ 1291 (1455)
.++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22469999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cccEEEeCCCC--CCC-CcHHHhcCcC-------CC-CCh-HHHHHHHHHhcHHHHHHhCCCch---hhhcCCC
Q 000511 1292 LR----GRFAVVPQSPF--LFE-GSLRDNLDPF-------HM-NDD-LKIWSVLEKCHVKEEVEAVGLET---FVKESGI 1352 (1455)
Q Consensus 1292 lR----~~i~~VpQdp~--lf~-gTIreNLdp~-------~~-~~d-~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~ 1352 (1455)
++ +++++|||+|. +++ .||.+|+... +. ..+ .+. +....+.++.+||+. .......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~gL~~~~~~~~~~p~ 157 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRVGIKDHKDAMRSFPY 157 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHCCCCChHHHHhCCch
Confidence 53 47999999996 333 4898887421 00 011 010 011223344445542 2455667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeE
Q 000511 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1455)
Q Consensus 1353 ~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1429 (1455)
.||||||||++|||||+.+|+|||+||||++||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|
T Consensus 158 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999988643 7899999999999976 999999999999
Q ss_pred EEeCChhHHhccCCcHHHH
Q 000511 1430 VEQGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1430 ve~G~p~eLl~~~~s~f~~ 1448 (1455)
+|.|+++++.+++...|.+
T Consensus 238 ve~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 238 VETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEECCHHHHHhCCCCHHHH
Confidence 9999999999876656654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=354.11 Aligned_cols=200 Identities=30% Similarity=0.418 Sum_probs=170.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HHhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~lR~~ 1295 (1455)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 4699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred cEEEeCCCCCCC-CcHHHhcCcCCC---CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1296 FAVVPQSPFLFE-GSLRDNLDPFHM---ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1296 i~~VpQdp~lf~-gTIreNLdp~~~---~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
++|+||+|.+|. .|+++|+..... .. +++++++++.. |++........+||||||||++||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQV---------GLEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999986 599999865311 11 22333444444 55444444556899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCe
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1428 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1428 (1455)
|+++|+++||||||++||+++...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999998864 48999999999999986 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=351.99 Aligned_cols=207 Identities=27% Similarity=0.377 Sum_probs=173.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH---Hhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~---lR~~ 1295 (1455)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999532 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred cEEEeCCCCCC-CCcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1296 FAVVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1296 i~~VpQdp~lf-~gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
++|+||+|.+| ..|++||+.... ..++++..+. ..+.++.+|++........+||+|||||++||||++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 569999997531 1222222211 12233444665555566678999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEE
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVE 1431 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1431 (1455)
|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999998763 47899999999999976 79999999999853
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=352.02 Aligned_cols=208 Identities=25% Similarity=0.380 Sum_probs=182.5
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHHhcc
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGR 1295 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~----~~lR~~ 1295 (1455)
.+.|+.++|+++ .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 569999999999999999999999999999999999999999999999998876542 345678
Q ss_pred cEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1296 i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
++|+||+|.+|+.|+++|+......++++..++++.+++.+.++.+ |+++.++....+||+|||||++||||++++|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999876545566677888888888777665 78888888888999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHH--HHHHhc-CCcEEEEeccChhhHhhhCEEEEEeCCe
Q 000511 1374 VLCLDECTANVDAQTASILQN--AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1428 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~--~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1428 (1455)
+|||||||++||..+.+.+.+ .++... .+.|+|++||+.+.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999888877 444332 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=359.89 Aligned_cols=222 Identities=25% Similarity=0.355 Sum_probs=185.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC--C---CCceEEECCEeCCC--CChH
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~--~---~~G~I~IdG~di~~--i~~~ 1290 (1455)
.|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 469999999999999999999999999999999999975 4 59999999999864 3455
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCC---C-CC----hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~---~-~~----d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
.+|++++|+||+|.+|+.|+++|+.... . .. ++++.++++.+++.+ ++.........+||+|||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-----EVKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-----chhhHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999996421 1 11 122333444443321 122344556678999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+...+
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999887667899999999999875 899999999999999999999876
Q ss_pred CCcHH
Q 000511 1442 ECSVF 1446 (1455)
Q Consensus 1442 ~~s~f 1446 (1455)
+...+
T Consensus 238 ~~~~~ 242 (252)
T PRK14255 238 PKEKE 242 (252)
T ss_pred CCChH
Confidence 65433
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=350.44 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=170.2
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5789999999642 2 39999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||+|.+|++ |++||+.+.... .++++.++++.+ |++.........||+|||||++||||+++
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARV---------GLAGLEKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHc---------CCHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 999999753211 122344444444 55544555566899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999998764 37899999999999976 8999999999998765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=360.22 Aligned_cols=215 Identities=23% Similarity=0.344 Sum_probs=182.8
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 689999999964 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EeCCCC-CCCCcHHHhcCcCCC-C------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPF-LFEGSLRDNLDPFHM-N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~-lf~gTIreNLdp~~~-~------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||++. .+..|+++|+..+.. . ..++ ....+.+.++.+|+..........||+|||||++||||++.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 154 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPH-----DAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQ 154 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHH-----HHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999995 456799999965321 0 0000 01112333444455544555667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhc
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
+|+++||||||++||.++.+.+.+.|++.. ++.|||++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999998764 3789999999999995 599999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=357.23 Aligned_cols=227 Identities=27% Similarity=0.386 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECC------EeCCCCChH
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG------LNIINTPVR 1290 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG------~di~~i~~~ 1290 (1455)
..++++|++++|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999964 4699999999999999999999999999999999999999997666655 677777777
Q ss_pred HHhcccEEEeCCCCCCCC-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCc----hhhhcCCCCCChhHHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQL 1361 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~g-TIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLd----t~v~e~G~~LSgGQrQr 1361 (1455)
.+|++++|+||+|.+|++ |+++|+.... ...+++.++. +.+.++.+|++ ...+..+..||+|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 889999999999999986 9999997431 1122232221 22233334553 23455667899999999
Q ss_pred HHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhc
Q 000511 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1362 l~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
++||||++++|++++|||||++||..+.+.+.+.|++..+++|||++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~ 241 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFT 241 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999988767899999999999995 599999999999999999999988
Q ss_pred cCCcHHHHHH
Q 000511 1441 DECSVFSSFV 1450 (1455)
Q Consensus 1441 ~~~s~f~~l~ 1450 (1455)
++...+.+.+
T Consensus 242 ~~~~~~~~~~ 251 (257)
T PRK14246 242 SPKNELTEKY 251 (257)
T ss_pred CCCcHHHHHH
Confidence 7654455443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=354.26 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=180.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCCCCCCCcHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~VpQdp~lf~gTIreNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
|+||++.+|+.|++||+...... .+.+ ...+.+.++.+|++ +.......+||+|||||++||||++++|++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPD------PAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV 158 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChH------HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999642110 1100 01123444555774 456677789999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEe-CCeEEEeCChh
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILD-HGHLVEQGNPQ 1436 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~-~G~ive~G~p~ 1436 (1455)
+||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 159 LLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999998864 3789999999999998899999995 66667888874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=347.32 Aligned_cols=220 Identities=30% Similarity=0.427 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCE---eCCCCChHHHhc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL---NIINTPVRDLRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~---di~~i~~~~lR~ 1294 (1455)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||. |.++++.+ .+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 3778899888864 36899999999999999999999999999999999999999999999999 77774443 46
Q ss_pred ccEEEeCCCCCCCC-cHHHhcCcCCCC-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPFHMN-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~g-TIreNLdp~~~~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
+||+|.||.-||.- ||++|+.++-+. ++.++. ....+.++-..|+-.-+.-...||||||||+||||||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r-----~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-----ARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHH-----HHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHh
Confidence 89999999999865 999999887422 222221 1222222222344333455678999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcH
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1445 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~ 1445 (1455)
.-.|++|+||||.++||.+-.+.+++-+++.. -+.|+++|||+.+.+.. ||||+||++|+|...|+|+|....+++.
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~ 232 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASR 232 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCcc
Confidence 99999999999999999999999999888764 38999999999998765 8999999999999999999999999876
Q ss_pred H
Q 000511 1446 F 1446 (1455)
Q Consensus 1446 f 1446 (1455)
|
T Consensus 233 f 233 (345)
T COG1118 233 F 233 (345)
T ss_pred c
Confidence 6
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=365.80 Aligned_cols=213 Identities=30% Similarity=0.507 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 24699999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEeCCCCCCCC-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
|+||+|.+++. |++|||+++.. ..++++.+.++..+| +..-......||+|||||+.||+||+
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L---------~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGL---------EDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCC---------chhhCcchhhcCHHHHHHHHHHHHHh
Confidence 99999998876 99999986432 113355555655554 43223334579999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-C-cEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~-~-~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++..|+++++.+.
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999998865 4 799999999999988 999999999999999999998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=350.08 Aligned_cols=201 Identities=25% Similarity=0.379 Sum_probs=171.0
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++|+|.. +++|+|+||++++|++++|+|||||||||||++|+|.++|.+|+|.++|
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 3678999999973 3359999999999999999999999999999999999999999999998
Q ss_pred -cEEEEcCCCCCCC-cCHHHHhccCCC-C----------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 -SIAYVPQVPWILS-GTIRDNILFGKN-Y----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~-~ti~~nI~~g~~-~----------~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.+||+||++.... -||+|-+.+|+. + |++...++++.+++++-. ...-.+||||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGer 144 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGER 144 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHH
Confidence 6999999987654 499999999852 1 333455667777776432 234458999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccc-cccCCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~ 814 (1455)
|||.|||||.++|+|++||||||+||....-.+++.+..-...+|+|+|+|+|+++. +.+||++++|++|+++.+|+++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence 999999999999999999999999999999999887432223457899999999987 5679999999999999999998
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
|...
T Consensus 225 evlT 228 (258)
T COG1120 225 EVLT 228 (258)
T ss_pred hhcC
Confidence 8754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=352.11 Aligned_cols=204 Identities=26% Similarity=0.416 Sum_probs=173.8
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHHhccc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~--i~~~~lR~~i 1296 (1455)
|+++||+++|+. .++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 4556778999
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
+|+||+|.+|+ .|++||+.... ..+.++..+ ...+.++.+|++........+||+|||||++||||++++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 99999999887 59999996532 112222111 123445555777666777778999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeE
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1429 (1455)
|++|||||||++||+++.+.+.+.|++.. .++|||++||+++.+.+ ||+|++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998764 47899999999999975 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=352.62 Aligned_cols=201 Identities=33% Similarity=0.457 Sum_probs=166.2
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 46999999999999999999999999999999999999999999999998874 468899999
Q ss_pred eCCCCC---CCCcHHHhcCcCCCC-------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1300 PQSPFL---FEGSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1300 pQdp~l---f~gTIreNLdp~~~~-------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
||+|.+ |+.|++||+...... ..++. .....+.++.+|++........+||||||||++|||||+
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHH
Confidence 999976 568999999643211 11111 111223334445555455566789999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++| +++.|
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999998764 57899999999999876 8999999986 55654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=351.28 Aligned_cols=214 Identities=27% Similarity=0.444 Sum_probs=180.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 38999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|+ .|++||+..... .+..+..+ .+.+.++.+|+...+.....+||+|||||++||||++++|++
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999886 699999964211 11111111 122333344555555566678999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
++|||||++||..+.+.+.+.+++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|+++++.+.+
T Consensus 151 lllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 151 LLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 999999999999999999999988643 8999999999999876 8999999999999999999998764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=359.74 Aligned_cols=220 Identities=24% Similarity=0.308 Sum_probs=184.9
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC--------CceEEECCEeCCCCChH
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--------GGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~--------~G~I~IdG~di~~i~~~ 1290 (1455)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999988888
Q ss_pred HHhcccEEEeCCCC-CCCCcHHHhcCcCCC-C-ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1291 DLRGRFAVVPQSPF-LFEGSLRDNLDPFHM-N-DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~-lf~gTIreNLdp~~~-~-~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
.+|+.++|+||++. +|+.|++||+..... . ........-......+.++.+|+++.++.....||||||||++||||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara 159 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV 159 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 88889999999986 578899999965321 0 00000000001112344455577777777778999999999999999
Q ss_pred Hc---------cCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1368 LL---------KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1368 lL---------r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
|+ .+|++|||||||++||+++.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|++
T Consensus 160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (272)
T PRK13547 160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAP 239 (272)
T ss_pred HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCH
Confidence 99 59999999999999999999999999987643 7899999999999864 999999999999999999
Q ss_pred hHHhc
Q 000511 1436 QTLLQ 1440 (1455)
Q Consensus 1436 ~eLl~ 1440 (1455)
+++++
T Consensus 240 ~~~~~ 244 (272)
T PRK13547 240 ADVLT 244 (272)
T ss_pred HHHcC
Confidence 99875
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=368.22 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=174.7
Q ss_pred EecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCC
Q 000511 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1306 (1455)
Q Consensus 1227 ~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf 1306 (1455)
+|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 469999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred CC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCc
Q 000511 1307 EG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382 (1455)
Q Consensus 1307 ~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS 1382 (1455)
++ |++||+.+... .+..+..+ ...+.++.+|++........+||||||||++|||||+++|++|||||||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEE-----RAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 86 99999975321 11111111 12334444466555555666899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1383 NVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1383 ~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+||+.+.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999998764 47899999999999876 999999999999999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=351.60 Aligned_cols=209 Identities=24% Similarity=0.405 Sum_probs=178.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++||+++|+.. ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 6899999999632 249999999999999999999999999999999999999999999999987654 3578999
Q ss_pred EeCCCCCCCC-cHHHhcCcCC-CC---C---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFH-MN---D---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~-~~---~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||++.+|++ |++||+.... .. . ++++.++++.+ |++..+......||||||||++||||+++
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQM---------GIEDLLARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHc---------CcHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999997431 11 1 22334444444 55555555556899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
+|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 9999999999999999999999999988643 7899999999999876 8999999999999999999998754
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=347.20 Aligned_cols=204 Identities=52% Similarity=0.902 Sum_probs=181.7
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcCcEEEEcCCCCCCC
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~p~l~~ 681 (1455)
++++|+++.|..... +..++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 367899999964210 0023699999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCccccc
Q 000511 682 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761 (1455)
Q Consensus 682 ~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD 761 (1455)
.|++||+.++..+++++..++.+.+++...+..+|.|+++.+++++.+||||||||++||||++++|++++|||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 762 AQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 762 ~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
++..+.+++.++......++|+|++||+++.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999888887544322234689999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=356.30 Aligned_cols=221 Identities=26% Similarity=0.422 Sum_probs=182.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC----CCceEEECCEeCCCCChHHHh
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~----~~G~I~IdG~di~~i~~~~lR 1293 (1455)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cccEEEeCCCC-CCC--CcHHHhcCc----CC-CCChHHHHHHHHHhcHHHHHHhCCCch---hhhcCCCCCChhHHHHH
Q 000511 1294 GRFAVVPQSPF-LFE--GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1294 ~~i~~VpQdp~-lf~--gTIreNLdp----~~-~~~d~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~~LSgGQrQrl 1362 (1455)
+.++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+ |++. .++.....||+|||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAV---------GLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHc---------CCCChhhhhhcCCcccCHHHHHHH
Confidence 67999999985 343 477777532 11 12233444445444 4443 45667778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+|||||+++|+||||||||++||..+.+.+.+.|++..+ ++|||+|||+++.+.+ ||||++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988643 7899999999999875 8999999999999999999998
Q ss_pred ccCCc-HHHHHHHh
Q 000511 1440 QDECS-VFSSFVRA 1452 (1455)
Q Consensus 1440 ~~~~s-~f~~l~~~ 1452 (1455)
+++.. .++.++..
T Consensus 230 ~~~~~~~~~~~~~~ 243 (254)
T PRK10418 230 NAPKHAVTRSLVSA 243 (254)
T ss_pred hCCCCHHHHHHHHh
Confidence 76544 45555543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=330.61 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i 1296 (1455)
-++++|++..|.. -.+|++|||++++||.++++||||+||||++++|+|+.++.+|+|.++|.||...+++.. |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4789999999975 469999999999999999999999999999999999999999999999999999988765 6679
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCCC-ChHHHHHHHHHhcHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~~-~d~ei~~aL~~~~l~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+||||...+|+. ||.|||..+... .+++-++ ..+++..+-+ -|....+..+.+|||||+|.++|||||+.+||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999976 999999765322 1111111 0122222222 45566677778999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
+|+|||||.+|-+.--+.|.++|++..+ +.||+.|-++.....+ +||.+||++|+|+..|+.+||.++++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 9999999999999999999999988764 5699999999998765 89999999999999999999998764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=355.37 Aligned_cols=215 Identities=20% Similarity=0.286 Sum_probs=177.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHHH-hcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDL-RGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~~~~l-R~~ 1295 (1455)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 46999999999999999999999999999999999994 7999999999999988877654 456
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCCC----------CChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCC-CCChhHHHHH
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFHM----------NDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGI-SFSVGQRQLI 1362 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~~----------~~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~-~LSgGQrQrl 1362 (1455)
++++||+|.+|++ |+++|+..... .+..+.. ..+.+.++.+|++.. ...... .||||||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 9999999999987 89999853210 0111111 122344445577543 333333 4999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh--hCEEEEEeCCeEEEeCChhHHh
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+||||++++|++|||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999998864 47899999999999986 7999999999999999998654
Q ss_pred c
Q 000511 1440 Q 1440 (1455)
Q Consensus 1440 ~ 1440 (1455)
.
T Consensus 234 ~ 234 (243)
T TIGR01978 234 E 234 (243)
T ss_pred c
Confidence 3
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=357.69 Aligned_cols=231 Identities=22% Similarity=0.331 Sum_probs=189.8
Q ss_pred cEEEEEEEEEecCC-------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-
Q 000511 1218 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1289 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~- 1289 (1455)
.|+++||+++|+.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 3579999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcccEEEeCCCC--CC-CCcHHHhcCcC-CCCChHHHHHHHHHhcHHHHHHhCCCch-hhhcCCCCCChhHHHHH
Q 000511 1290 --RDLRGRFAVVPQSPF--LF-EGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1290 --~~lR~~i~~VpQdp~--lf-~gTIreNLdp~-~~~~d~ei~~aL~~~~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl 1362 (1455)
..+|+.++|+||++. ++ ..|+++|+... ....+ +...-....+.+.++.+|+++ ..+.....||+|||||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 346889999999983 44 36999998531 10000 001111223455666668874 56677789999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+|||||+++|+||||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999999999999999999987643 7899999999999985 8999999999999999999998
Q ss_pred ccCCcHHHHHHH
Q 000511 1440 QDECSVFSSFVR 1451 (1455)
Q Consensus 1440 ~~~~s~f~~l~~ 1451 (1455)
.. ++.|..-+.
T Consensus 241 ~~-~~~~~~~~~ 251 (268)
T PRK10419 241 TF-SSPAGRVLQ 251 (268)
T ss_pred CC-CCHHHHHHH
Confidence 64 445544443
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=325.49 Aligned_cols=217 Identities=26% Similarity=0.412 Sum_probs=187.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
+++.+++.+|++ ...+++||||+++.||.+||.|+|||||||+++.|..++.|++|.|+|||.|+.+-| ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 678999999976 334899999999999999999999999999999999999999999999999998765 667999999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCCC---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
++-+.-++. -|.||||.+++.. ++.++. +...+..+.++++..+..+-.+||.|+|||++|||||.++|+|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 997766775 4999999887532 333332 2233444455666666655567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
++||||||+||.-+.+.+++.|++.. .+++||+-||-++.++ -||||+++.+|+++..|+++++.++.
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999998775 4999999999999998 59999999999999999999998754
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=331.04 Aligned_cols=203 Identities=31% Similarity=0.413 Sum_probs=173.5
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
+..|+++++++++.. +.+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 567999999999853 3459999999999999999999999999999999999999999999987
Q ss_pred ------cEEEEcCCCCCCCc-CHHHHhccC----CCCCHHHHH----HHHHHhcchHH-HhhccCCCcccccCCCCcccc
Q 000511 669 ------SIAYVPQVPWILSG-TIRDNILFG----KNYDPQSYS----ETLKACTLDVD-ISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 ------~i~y~~Q~p~l~~~-ti~~nI~~g----~~~~~~~~~----~v~~~~~l~~d-i~~l~~gd~t~ig~~g~~LSG 732 (1455)
++|+++|+--||+. ||+||+.|. ...+++..+ .-+++++|..+ .+.+| .+|||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSG 148 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSG 148 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcc
Confidence 59999999999987 999999995 234554444 34678888877 55555 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
|++.|+|||||+..||+|+++|||||+|||.++..+- .++... ..-+-|+|+|||+++.+.. ||+|+++.||+|...
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 9999999999999999999999999999999777544 434321 2236799999999998765 899999999999999
Q ss_pred cCHHHHHhc
Q 000511 811 GSSADLAVS 819 (1455)
Q Consensus 811 g~~~~l~~~ 819 (1455)
|+++|+.+.
T Consensus 228 Gt~~el~~s 236 (263)
T COG1127 228 GTPEELLAS 236 (263)
T ss_pred CCHHHHHhC
Confidence 999999764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.88 Aligned_cols=200 Identities=30% Similarity=0.458 Sum_probs=169.1
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------c
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------S 669 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------~ 669 (1455)
..|+++|++|+|... + +|+||||++++|++++|+||||||||||+|+|+|.++|.+|+|.+.| +
T Consensus 3 ~~i~v~nl~v~y~~~---~---vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR---P---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE---e---eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 358999999999742 2 49999999999999999999999999999999999999999999865 5
Q ss_pred EEEEcCCC---CCCCcCHHHHhccCCCC-----------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 670 IAYVPQVP---WILSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 670 i~y~~Q~p---~l~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
||||||.. |-|..||+|-+.+|... |.+..+++++..++. |+. ...-.+|||||+
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~----------~r~i~~LSGGQ~ 145 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLR----------DRQIGELSGGQK 145 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhh----------CCcccccCcHHH
Confidence 99999964 77889999999987432 346778888888876 333 233448999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
|||-|||||.++|++|+|||||+++|+.++..+++- +.....+|+||++|||+++.+. ++|+|+.|+ +++...|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 999999999999999999999999999999988775 4332334899999999999876 599999995 5678899988
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
+...
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=353.99 Aligned_cols=226 Identities=22% Similarity=0.365 Sum_probs=187.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEe-----CCCCChHH-
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~d-----i~~i~~~~- 1291 (1455)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 5899999999964 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ---HhcccEEEeCCCC--C-CCCcHHHhcCc----CCCCChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000511 1292 ---LRGRFAVVPQSPF--L-FEGSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1360 (1455)
Q Consensus 1292 ---lR~~i~~VpQdp~--l-f~gTIreNLdp----~~~~~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1360 (1455)
+++.++++||+|. + +..|+.+|+.. .......+. ...+.+.++.+|++ +..+.....|||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 3467999999985 2 34588888732 111111111 12344566667886 5677788899999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhH
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~e 1437 (1455)
|++|||||+++|++|||||||++||+.+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.|++++
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999985 89999999999999999999
Q ss_pred HhccCCcHHHHHH
Q 000511 1438 LLQDECSVFSSFV 1450 (1455)
Q Consensus 1438 Ll~~~~s~f~~l~ 1450 (1455)
+..++...|.+++
T Consensus 236 ~~~~~~~~~~~~~ 248 (253)
T TIGR02323 236 VLDDPQHPYTQLL 248 (253)
T ss_pred HhcCCCCHHHHHH
Confidence 9876655555544
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=351.12 Aligned_cols=212 Identities=27% Similarity=0.366 Sum_probs=173.5
Q ss_pred EEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHHh
Q 000511 1219 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~~~~lR 1293 (1455)
+.|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999765 3689999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cccEEEeCCCCCCCC-cHHHhcCcCCCC-ChHHHHHHHHHhcHHH-HHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1294 GRFAVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKE-EVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~g-TIreNLdp~~~~-~d~ei~~aL~~~~l~~-~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
++++++||++.+|++ |++||+.+.... ......+..+.....+ .++.++++........+||+|||||++||||+++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999999999987 999999743110 0000011111111122 3444466655556667899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccCh-hhH-hhhCEEEEEeCCeEEEeC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRI-STV-LNMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl-~ti-~~~DrI~vl~~G~ive~G 1433 (1455)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 478999999998 455 558999999999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=368.70 Aligned_cols=212 Identities=24% Similarity=0.377 Sum_probs=181.0
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHHHhc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1294 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~~~~lR~ 1294 (1455)
|++ |++++|... .+ |+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 99999999999999999999999999999999999999999999998653 2445688
Q ss_pred ccEEEeCCCCCCCC-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~g-TIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+++|+||++.+|+. |+++|+.+... ..++++.++ ++.+|++........+||||||||++|||||+++|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~---------l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKI---------VALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHH---------HHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999999974 99999975422 122333333 44446666566667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCc
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECS 1444 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s 1444 (1455)
++||||||||+||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|+++..++..
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~ 222 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence 99999999999999999999999987653 6899999999998866 899999999999999999999988753
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=355.11 Aligned_cols=213 Identities=38% Similarity=0.661 Sum_probs=191.5
Q ss_pred CCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcCcEEEEcCC
Q 000511 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1455)
Q Consensus 597 ~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~~i~y~~Q~ 676 (1455)
+....++++|+++.+ . ++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|.++|++|+
T Consensus 35 ~~~~~l~i~nls~~~-----~---~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----A---PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQF 106 (282)
T ss_pred CCCCeEEEEEEEEec-----c---cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCc
Confidence 345678999999852 1 25999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCC
Q 000511 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV 756 (1455)
Q Consensus 677 p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep 756 (1455)
+++++.|++||+.++..+++.++.+.++++++...+..+|.+.++.+++++.+||||||||++||||++++|+++|||||
T Consensus 107 ~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 107 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999999999998765566677788888899888999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 757 LSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 757 ~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
|++||+.+.+.+.+.++.. +.+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 187 t~gLD~~~~~~l~~~ll~~-~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 187 FGYLDVFTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred CccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999988887753322 345789999999999998899999999999999999988754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=354.74 Aligned_cols=205 Identities=28% Similarity=0.360 Sum_probs=172.9
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|+ .|+++|+.... .....+. .....+.++.+|++........+||||||||++||||++++|++
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 59999996431 1121111 11223444555666656666778999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEe--CCeEEEeCCh
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVEQGNP 1435 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~ive~G~p 1435 (1455)
|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|+ +|++++.+++
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998863 38999999999999865 89999998 5999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=328.37 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=173.4
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC-----cEEEEcC-----
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-----GSIHASG----- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~-----G~i~~~~----- 668 (1455)
...++++|.++.|.. ..+|+|||++|+++++++++|||||||||||+++.+..+..+ |+|.++|
T Consensus 5 ~~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~ 78 (253)
T COG1117 5 IPAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78 (253)
T ss_pred cceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccC
Confidence 356889999998863 235999999999999999999999999999999998877765 8998876
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCCC---C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
+||.|+|.|.-|..||.|||.+|... . ++..++.++.++|.+... ....+.+..||
T Consensus 79 ~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~~LS 151 (253)
T COG1117 79 PKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSALGLS 151 (253)
T ss_pred CCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCccCCC
Confidence 59999999999999999999998532 1 234666777777766554 23456788999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
|||+||++||||+.-+|+|+|||||||||||.+..+|-+. +.. +.++-|+|+|||+++.... +|+...+-+|+++|.
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeL-i~e-Lk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL-ITE-LKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHH-HHH-HHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999988887765 433 5556699999999998765 899999999999999
Q ss_pred cCHHHHHh
Q 000511 811 GSSADLAV 818 (1455)
Q Consensus 811 g~~~~l~~ 818 (1455)
|+.+++-.
T Consensus 230 g~T~~iF~ 237 (253)
T COG1117 230 GPTDKIFT 237 (253)
T ss_pred cCHHhhhc
Confidence 99888743
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=317.17 Aligned_cols=198 Identities=29% Similarity=0.407 Sum_probs=170.3
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------cE
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 670 (1455)
+.++++.|+|... + -..+++|++||+++|+|||||||||||++|.|+..|.+|+|.++| .+
T Consensus 2 l~L~~V~~~y~~~---~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGHL---P-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEEeeCcc---e-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 3567788888642 2 246799999999999999999999999999999999999999987 48
Q ss_pred EEEcCCCCCCCc-CHHHHhccCCC-------CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHH
Q 000511 671 AYVPQVPWILSG-TIRDNILFGKN-------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1455)
Q Consensus 671 ~y~~Q~p~l~~~-ti~~nI~~g~~-------~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 742 (1455)
+.++|+..||.- ||++||-+|.. .+.++.+.++...+|....+.+|. +|||||||||||||
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALAR 142 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALAR 142 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHH
Confidence 999999999976 99999999853 245677888888899888888885 89999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHhc
Q 000511 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 743 aly~~~~illlDep~s~lD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
++.++.+|++||||||||||.-......- +... ..++.|+++|||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~L-v~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLAL-VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHH-HHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999987776654 2221 3457799999999998775 999999999999999999887643
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=358.37 Aligned_cols=203 Identities=32% Similarity=0.412 Sum_probs=174.4
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------c
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 669 (1455)
.++++|++..|... . +++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~i~l~~v~K~yg~~-----~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGSF-----E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCCc-----e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 47899999998642 1 49999999999999999999999999999999999999999999987 5
Q ss_pred EEEEcCCCCCCCc-CHHHHhccCCCCC-------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
||+|+|+.-|+.- ||+|||.||.... +++.+++.+..++++-++..| ..||||||||||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAla 145 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALA 145 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHH
Confidence 9999999999865 9999999986542 457778888888887776554 58999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHhcc
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSL 820 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~~ 820 (1455)
||+.++|+++|||||+|+||++....+-..+..-....+.|+|.|||+..... .||+|++|++|+|.+.|++.|+....
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999998777665522111233679999999987755 59999999999999999999997543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=355.14 Aligned_cols=229 Identities=25% Similarity=0.402 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC---CceEEECCEeCCCC-----Ch
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINT-----PV 1289 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~---~G~I~IdG~di~~i-----~~ 1289 (1455)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999963 46999999999999999999999999999999999999986 49999999998654 24
Q ss_pred HHHhcccEEEeCCCCCCCC-cHHHhcCcCCCC-ChH-----HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000511 1290 RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN-DDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1455)
Q Consensus 1290 ~~lR~~i~~VpQdp~lf~g-TIreNLdp~~~~-~d~-----ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1455)
..+|++++|+||++.+|++ |+++|+...... .+. .....-.+....+.++.+|++.........||+|||||+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 5678899999999998875 999999643110 000 000000011223444455666556667778999999999
Q ss_pred HHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHh
Q 000511 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1363 ~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+||||++.+|++|||||||++||.++.+.+.+.|++.. +++|||+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~- 240 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF- 240 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh-
Confidence 99999999999999999999999999999999998864 3789999999999865 4899999999999999999997
Q ss_pred ccCCcHHHHHHH
Q 000511 1440 QDECSVFSSFVR 1451 (1455)
Q Consensus 1440 ~~~~s~f~~l~~ 1451 (1455)
.+ ....+++.
T Consensus 241 ~~--~~~~~~~~ 250 (262)
T PRK09984 241 DN--ERFDHLYR 250 (262)
T ss_pred cc--HHHHHHHh
Confidence 32 24555554
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=344.79 Aligned_cols=201 Identities=22% Similarity=0.372 Sum_probs=171.0
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++||+++|+. .++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 578999999999999999999999999999999999999999999999987654 46788999
Q ss_pred EeCCCCCCCC-cHHHhcCcC-CC-C-----ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1299 VPQSPFLFEG-SLRDNLDPF-HM-N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~-~~-~-----~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+||+|.+|.+ |++||+... .. . .++++.++++.. |++........+||+|||||++||||+++
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQV---------GIADYLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHc---------CcHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999875 999998632 11 1 122333344444 55444555556899999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
+|+|+||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999998864 37899999999999875 89999999999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=336.88 Aligned_cols=195 Identities=28% Similarity=0.369 Sum_probs=160.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|++-.|...... ..+|+++||+|++||+++|+|||||||||||+.|.|...|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 3567777777654322 3569999999999999999999999999999999999999999999986
Q ss_pred ----cEEEEcCCCCCCCc-CHHHHhccC----CCCC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHH
Q 000511 669 ----SIAYVPQVPWILSG-TIRDNILFG----KNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1455)
Q Consensus 669 ----~i~y~~Q~p~l~~~-ti~~nI~~g----~~~~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 736 (1455)
.|||++|+..|... |++|||.+. .... .++..+.++..+|.+... ......|||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQ 149 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQ 149 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHH
Confidence 49999999987654 999999853 2221 345555666666654433 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 737 RvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
|||||||++.+|++++.||||.+||.++++.+++.+......+|+|+|+|||+......|||++.|+||++.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999863322134578999999999999999999999999854
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=369.01 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=182.2
Q ss_pred EEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC----hHHHhcccEE
Q 000511 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP----VRDLRGRFAV 1298 (1455)
Q Consensus 1223 nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~----~~~lR~~i~~ 1298 (1455)
|++++|+.. .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 35 999999999999999999999999999999999999999999999986542 3456889999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILl 1376 (1455)
+||++.+|++ |++||+.+... ....+. +....+.++.+|++...+.....||||||||++|||||+++|++||
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999986 99999975322 111111 1123344555577777777778999999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1377 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 9999999999999999999987643 7899999999999876 89999999999999999999998776544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=348.10 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=176.5
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HHh
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~lR 1293 (1455)
++++|++++|+++. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996432 5699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cccEEEeCCCCCCC-CcHHHhcCcCCC----CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1294 GRFAVVPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~-gTIreNLdp~~~----~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
+.++|+||+|.+|. .|+.+|+.+... .+.++..+ ...+.++.+|++........+||+|||||++||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 89999999999987 699999975321 12222211 223455556777667777778999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeE
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHL 1429 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~i 1429 (1455)
+++|++|||||||++||.++.+.+.+.|++.. .++|+|+|+|+++....||+|++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999998765 37999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=348.11 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=185.2
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|.... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDG----PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCC----ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 36789999985321 2359999999999999999999999999999999999999999999876
Q ss_pred cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccC
Q 000511 669 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 747 (1455)
.++|++|++++++.|++||+.++.. ...++..+.++..++.+-++.+|.|.++..+..+.+|||||||||+||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 3899999999999999999988643 344455556666777777888998988888899999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 748 ~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRN-MHD-ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999988876 433 3457899999999999988999999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=330.27 Aligned_cols=171 Identities=44% Similarity=0.760 Sum_probs=161.9
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+...+++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
+||+|.+|+.|++||+ ||+|||||++||||++++|++||||
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~llllD 121 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------LSGGQRQRIAIARALLRDPPILILD 121 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 9999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCe
Q 000511 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1428 (1455)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 122 EP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 122 EATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999988767899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=322.71 Aligned_cols=225 Identities=24% Similarity=0.388 Sum_probs=195.3
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hcc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGR 1295 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~ 1295 (1455)
+.+..+|+..+|.. .+|+++|||+|++||.||+.||+||||||.+.++.|+..|++|+|.+||.||+.+|.+.- |-.
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 46788999999964 479999999999999999999999999999999999999999999999999999998863 445
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
|+|+||||.+|.+ ||+|||..--+..+.+.+.+-++..+.+.++.+++...-...|..||||||+|+-|||||..+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 9999999999987 999999644333222233344555566667777777777788889999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hHhhhCEEEEEeCCeEEEeCChhHHhccCC
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLNMDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~-ti~~~DrI~vl~~G~ive~G~p~eLl~~~~ 1443 (1455)
++||||.+++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|+|+.+++.
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~ 231 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChh
Confidence 99999999999999999999998764 5778999999976 666799999999999999999999999864
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=357.71 Aligned_cols=204 Identities=27% Similarity=0.389 Sum_probs=174.4
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|++-+|.. ..+++|+||+|++||++++.|||||||||+|++|+|+.+|++|+|.++|
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 46899999999862 2359999999999999999999999999999999999999999999987
Q ss_pred cEEEEcCCCCCCC-cCHHHHhccCCCC----C-H---HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 SIAYVPQVPWILS-GTIRDNILFGKNY----D-P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~-~ti~~nI~~g~~~----~-~---~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
.|++|+|+--||. .||+|||.||... . + +++.++++..+|..-- ..+...||||||||||
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVA 146 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVA 146 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHH
Confidence 5999999999986 5999999999652 2 2 3677777777776533 3456799999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccc-cccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
|||||..+|+++|||||+||||.+..+++-..+.......|.|.|+|||+.+. +..+|+|.+|++|+|...|+++|+..
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999988887666332223347899999999876 66799999999999999999999965
Q ss_pred cc
Q 000511 819 SL 820 (1455)
Q Consensus 819 ~~ 820 (1455)
..
T Consensus 227 ~P 228 (352)
T COG3842 227 RP 228 (352)
T ss_pred Cc
Confidence 43
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=343.51 Aligned_cols=204 Identities=31% Similarity=0.407 Sum_probs=174.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|. .|+++|+.+.. ..+++++.++++.. |++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV---------DLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc---------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 59999986421 22334444445444 454444445567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhH
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~e 1437 (1455)
|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||||++|++|++++.|++.+
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999998764 47899999999999865 89999999999999999876
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=338.85 Aligned_cols=201 Identities=30% Similarity=0.406 Sum_probs=168.3
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
|.+++.+..|.. ..+++|||++|+.||++++.|||||||||||++|+|...|++|.|.++|
T Consensus 3 i~i~~~~~~~~~------~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 3 IRINNVKKRFGA------FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred eeehhhhhhccc------ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 556666666653 2348999999999999999999999999999999999999999999987
Q ss_pred -cEEEEcCCCCCCC-cCHHHHhccCCCCC---------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 -SIAYVPQVPWILS-GTIRDNILFGKNYD---------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~-~ti~~nI~~g~~~~---------~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
+||||.|+.-+|. .||.|||.||.+.. ..+..+.++.|.|+.--+ .....||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 5999999999885 59999999996322 245667788888865333 3456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~ 815 (1455)
|||||||..+|++|||||||+|||++..+.+-+.+. .-.. .|.|+++|||+.++.. .||+|++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr-~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH-HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence 999999999999999999999999999887766632 2122 3679999999998854 599999999999999999999
Q ss_pred HHhcc
Q 000511 816 LAVSL 820 (1455)
Q Consensus 816 l~~~~ 820 (1455)
+....
T Consensus 225 v~~~P 229 (345)
T COG1118 225 VYDHP 229 (345)
T ss_pred HhcCC
Confidence 96543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=343.65 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=187.6
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|... .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDEK-----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCCC-----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 47899999998531 1359999999999999999999999999999999999999999999875
Q ss_pred -cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHcc
Q 000511 669 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 746 (1455)
.++|++|+|+++++|++||+.++.+ ...++..+.++.++++..++.+|.|.++..+....+|||||||||+||||+++
T Consensus 77 ~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3899999999999999999998754 34556777788889988899999999999999999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 747 ~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.++.||++++|++|++.+.|+.+++..
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEA-LEK-LMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999988776 443 345789999999999988899999999999999998887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=328.87 Aligned_cols=170 Identities=32% Similarity=0.562 Sum_probs=157.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998766 677889999
Q ss_pred EeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1455)
Q Consensus 1299 VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlL 1377 (1455)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 78 LPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred EecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999887 9999973 999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeE
Q 000511 1378 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1455)
Q Consensus 1378 DEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1429 (1455)
||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+.. ||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999998764 46899999999999884 899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.38 Aligned_cols=224 Identities=27% Similarity=0.456 Sum_probs=180.5
Q ss_pred EEEEEEEEEecCCC--CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC-C----CCceEEECCEeCCCCChHH
Q 000511 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-I----CGGQILVDGLNIINTPVRD 1291 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~-~----~~G~I~IdG~di~~i~~~~ 1291 (1455)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999997543 468999999999999999999999999999999999998 3 6799999999999999875
Q ss_pred H---h-cccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHh-----------cHHHHHHhCCCch---hhhcCCCC
Q 000511 1292 L---R-GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-----------HVKEEVEAVGLET---FVKESGIS 1353 (1455)
Q Consensus 1292 l---R-~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~-----------~l~~~i~~lgLdt---~v~e~G~~ 1353 (1455)
+ | +.|++|||||. .-|+|.... .+++.++++.- ...+.++..|++. .+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~-------~sLnPv~~I-g~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPM-------TSLNPVMTI-GDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCch-------hhcCChhhH-HHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcc
Confidence 4 3 47999999995 112222111 11222222210 0112222235543 45666778
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEE
Q 000511 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLV 1430 (1455)
Q Consensus 1354 LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~iv 1430 (1455)
||||||||+.||-|++.+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 99999999999999999999999999999999999999999998765 48999999999998876 8999999999999
Q ss_pred EeCChhHHhccCCcHHHHHH
Q 000511 1431 EQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1431 e~G~p~eLl~~~~s~f~~l~ 1450 (1455)
|.|+.+++++++...|.+.+
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999987776544
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=347.29 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=191.0
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
...++++|+++.|+.. . ..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENN-L---KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCC-C---CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 4679999999999642 1 2359999999999999999999999999999999999999999999865
Q ss_pred ---cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHc
Q 000511 669 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 745 (1455)
.++||+|+|+++++|++||+........+.+.++++..++...++.+|.|.++.+++.+.+||||||||++||||++
T Consensus 93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 48999999999999999999866444556677788888998889999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 746 ~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
++|++++|||||++||+++.+.+.+. +.. +.+++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKV-VMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHH-HHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999988877765 433 345789999999999998899999999999999999988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=329.69 Aligned_cols=172 Identities=33% Similarity=0.510 Sum_probs=159.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCC--hHHHhccc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLRGRF 1296 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~--~~~lR~~i 1296 (1455)
|+++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 46999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+|+||+|.+|.+ |++||+... ||+|||||++||||++++|+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 999999998865 999998643 9999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCe
Q 000511 1376 CLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1428 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1428 (1455)
||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999987654 6899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=335.28 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=164.0
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHH-hcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDL-RGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl--~~~~~G~I~IdG~di~~i~~~~l-R~~ 1295 (1455)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876654 556
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
++|+||+|.+|++ |+++|++ ....+||+|||||++||||++++|+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~---------------------------------~~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR---------------------------------YVNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEEeecChhhccCccHHHHHh---------------------------------hccccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999886 5666550 01136999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh--hhCEEEEEeCCeEEEeCChhHHh
Q 000511 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL--NMDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~--~~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
++|||||++||..+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999998764 3789999999999998 58999999999999999 55564
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=340.45 Aligned_cols=203 Identities=26% Similarity=0.391 Sum_probs=171.1
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC----ChHHHhcc
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRGR 1295 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i----~~~~lR~~ 1295 (1455)
++ |++++|+.. .+ |+||+|++ |++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|++
T Consensus 3 ~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 3 CV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred ee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 45 899999753 34 99999999 99999999999999999999999999999999999998643 34467889
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
++|+||++.+|++ |+++|+..... ..+++ .+....+.++.+|++.........||||||||++||||++++|+
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999864 99999975321 11111 11223445555677776777778999999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
|+||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999987643 7899999999999865 8999999999999876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.80 Aligned_cols=206 Identities=32% Similarity=0.443 Sum_probs=184.8
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|+... +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNL----PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCC----cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 368999999996421 2359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccC
Q 000511 669 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 747 (1455)
.++|++|+|.+++.|++|||.+....+.++..+.++..++.+.+..+|.|.++..++.+.+||||||||++||||++.+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999987666667777888888999988999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecC
Q 000511 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 748 ~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1455)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKT-IRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999998888776 433 344689999999999998899999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=335.54 Aligned_cols=190 Identities=24% Similarity=0.340 Sum_probs=162.2
Q ss_pred cEEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCC---CCCceEEECCEeCCCCChHHH
Q 000511 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDL 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~---~~~G~I~IdG~di~~i~~~~l 1292 (1455)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcccEEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccC
Q 000511 1293 RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1293 R~~i~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~ 1371 (1455)
|++++|+||++.+|.+ |+++|+...... . . .+....||+|||||++||||++++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------~----~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------G----NEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------c----ccchhhCCHHHHHHHHHHHHHhhC
Confidence 8899999999988875 999999643110 0 1 223346999999999999999999
Q ss_pred CCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEec-cChhhHh-hhCEEEEEeCCeEEEeC
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA-HRISTVL-NMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1372 ~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~Ia-Hrl~ti~-~~DrI~vl~~G~ive~G 1433 (1455)
|++|||||||++||+++.+.+.+.|++..+ +.|+|+++ |+.+.+. .||+|++|++|++++.|
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999988653 56766655 5556664 58999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=343.77 Aligned_cols=209 Identities=26% Similarity=0.408 Sum_probs=177.5
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999987 35799
Q ss_pred EEeCCCCCCC---CcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1298 VVPQSPFLFE---GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~VpQdp~lf~---gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
|+||+|.++. .|+++|+......+++++.++++.+++.+. .......||+|||||++||||++++|++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---------~~~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL---------IDAPMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH---------HhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998765 389999754333345566666666665443 3344567999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHHHHHH
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~~ 1451 (1455)
|||||||++||..+.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++ ++++.|+++++.++ ..|.+++.
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~~~~~ 218 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFISMFG 218 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHHHHhC
Confidence 999999999999999999999987643 7899999999999865 899999964 79999999998753 35666653
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=342.44 Aligned_cols=212 Identities=32% Similarity=0.487 Sum_probs=187.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|.... .++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGDG----PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEEEeCCCC----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 35788999885321 2359999999999999999999999999999999999999999999875
Q ss_pred cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccC
Q 000511 669 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~ 747 (1455)
.++|++|+|++++.|++||+.++.. ++++.+.+.++.+.+.+.++.+|.|.++..+....+||||||||++||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 77 QIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred hEEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 3899999999999999999998743 455667777788888888999998888889999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 748 ~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.++.||++++|++|++++.|+.+++...
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAA-LER-LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 999999999999999999988776 433 3457899999999999988999999999999999998887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=348.06 Aligned_cols=209 Identities=25% Similarity=0.375 Sum_probs=172.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999633 469999999999999999999999999999999999999999999999998752 12234699
Q ss_pred EEeCCCCC---CCCcHHHhcCcCCC--------C---ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000511 1298 VVPQSPFL---FEGSLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1298 ~VpQdp~l---f~gTIreNLdp~~~--------~---~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1455)
|+||+|.+ +..++++|+..... . .++++.++++.. |++.........||||||||++
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------gl~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV---------DMVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc---------CChhHhcCCcccCCHHHHHHHH
Confidence 99999865 45689999853210 0 112233334443 5544445555679999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
||||++++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|+++++.+
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999999998764 47899999999998865 8999777 899999999999864
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=329.70 Aligned_cols=172 Identities=30% Similarity=0.502 Sum_probs=156.6
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHHhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~-~~lR~~i 1296 (1455)
.++++|++++| +|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988864 4568899
Q ss_pred EEEeCCC---CCC-CCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSP---FLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp---~lf-~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+|+||++ .++ ..|++||+..... ||+|||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~al~~~p 123 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARWLARDP 123 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHHHccCC
Confidence 9999995 344 5799999864310 9999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeE
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~i 1429 (1455)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998764 47999999999999987 899999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=332.45 Aligned_cols=182 Identities=29% Similarity=0.430 Sum_probs=161.5
Q ss_pred cEEEEEEEEEecCC----CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHH
Q 000511 1218 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRD 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~~~~ 1291 (1455)
.|+++||+++|+.. ..++|+|+||+|++||+++|+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 58999999999752 257999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcccEEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1292 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1292 lR~~i~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
+|++++++||++.+|.+ |+++|+.... .. . .||+|||||++||||+++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~~---------~----------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------KL---------R----------GLSGGERKRVSIALELVS 128 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------Hh---------c----------cCCHHHHHHHHHHHHHHc
Confidence 78899999999998875 9999984210 00 0 699999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChh-hHh-hhCEEEEEeCCeEEEeC
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVL-NMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~-ti~-~~DrI~vl~~G~ive~G 1433 (1455)
+|+++||||||++||..+.+.+.+.|++.. +++|+|+++|+++ .+. .||+|++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 4899999999997 454 48999999999998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.90 Aligned_cols=203 Identities=30% Similarity=0.412 Sum_probs=174.9
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|.+|.|+.+ ..+|+|+|+++++|+.++|+|+||||||||++.+.|.++|++|.|.++|
T Consensus 3 ~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 47889999999754 2459999999999999999999999999999999999999999998765
Q ss_pred --cEEEEcCCC--CCCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
++|||.|+| .++..||.|.|.||.. .++ ++.+++++.|++....+. ...+||||||||
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqR 146 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQR 146 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceee
Confidence 499999999 6899999999999853 333 456778888888765443 345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
||||.+|..+|++++||||||+||+...+.+++.+..-....++|+|++||+++.+.. ||++++|++|+++.+|++.++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999998886322212336899999999999876 999999999999999999887
Q ss_pred Hhc
Q 000511 817 AVS 819 (1455)
Q Consensus 817 ~~~ 819 (1455)
.+.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 643
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=340.90 Aligned_cols=209 Identities=31% Similarity=0.482 Sum_probs=184.7
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------c
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 669 (1455)
+++|+++.|+.. ..+++|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 2 EFENVTFAYDPG-----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEEEEeCCC-----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 578899988532 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCC
Q 000511 670 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1455)
Q Consensus 670 i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 748 (1455)
++|++|+|++++.|++||+.++.. ...+...+.++.+++...+..+|.|.++.++.+..+||||||||++||||++.+|
T Consensus 77 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998753 3444556777888888888999999999999999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 749 ~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAA-LRD-VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999998888776 333 333789999999999998899999999999999998887754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=328.06 Aligned_cols=177 Identities=33% Similarity=0.522 Sum_probs=158.7
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+++||+++|+. .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999964 4699999999999999999999999999999999999999999999999999988888888899999
Q ss_pred eCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000511 1300 PQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379 (1455)
Q Consensus 1300 pQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDE 1379 (1455)
|| +++.+++. ..+...+.+||+|||||++||||++++|+++||||
T Consensus 79 ~q--------------------------~l~~~gl~---------~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 79 PQ--------------------------ALELLGLA---------HLADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred HH--------------------------HHHHcCCH---------hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99 44444443 33445566899999999999999999999999999
Q ss_pred cCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHh-hhCEEEEEeCCeEEEeC
Q 000511 1380 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1380 aTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 1433 (1455)
||++||.++.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999987654 789999999999985 48999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=341.17 Aligned_cols=211 Identities=30% Similarity=0.482 Sum_probs=184.6
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------c
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 669 (1455)
+++|+++.|+.... .++|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++| .
T Consensus 2 ~i~~l~~~~~~~~~---~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 2 EFKNVSFRYPSRPD---VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred eEEEEEEecCCCCC---ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 57889998864211 2359999999999999999999999999999999999999999998876 3
Q ss_pred EEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCC
Q 000511 670 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1455)
Q Consensus 670 i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 748 (1455)
++|++|+|++++.|++||+.++.. ...+...+.++.+++...+..+|.|.++..+....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 79 IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999998743 3445556677778888888899999888889999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 749 ~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
+++||||||++||+...+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~-l~~-~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEA-LDR-AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999988776 433 236789999999999988999999999999999998877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=323.08 Aligned_cols=202 Identities=25% Similarity=0.384 Sum_probs=170.0
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|++-.|+.. ..+|+||||+|++||+++|+|++||||||||++|.|..+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~~-----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCCC-----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 358899999999743 3459999999999999999999999999999999999999999999876
Q ss_pred -----cEEEEcCCCCCCCc-CHHHHhccCCC------------CCHHHHHHHHH---HhcchHHHhhccCCCcccccCCC
Q 000511 669 -----SIAYVPQVPWILSG-TIRDNILFGKN------------YDPQSYSETLK---ACTLDVDISLMVGGDMAYIGEKG 727 (1455)
Q Consensus 669 -----~i~y~~Q~p~l~~~-ti~~nI~~g~~------------~~~~~~~~v~~---~~~l~~di~~l~~gd~t~ig~~g 727 (1455)
+|||++|++.|.+. ||.+|++.|+- +.++....+++ ..++.+. .-.+.
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra 145 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRA 145 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHh
Confidence 59999999998765 99999997742 33444444333 3333322 23456
Q ss_pred CccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCe
Q 000511 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 806 (1455)
Q Consensus 728 ~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~ 806 (1455)
.+|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+..-....|.|+|+.-|++++.. +||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 7999999999999999999999999999999999999999998743333456789999999999965 599999999999
Q ss_pred EEEecCHHHHH
Q 000511 807 VKWIGSSADLA 817 (1455)
Q Consensus 807 i~~~g~~~~l~ 817 (1455)
|+..|+.+|+.
T Consensus 226 ivfDg~~~el~ 236 (258)
T COG3638 226 IVFDGPASELT 236 (258)
T ss_pred EEEeCChhhhh
Confidence 99999998864
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=331.72 Aligned_cols=181 Identities=24% Similarity=0.382 Sum_probs=160.3
Q ss_pred cEEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHHHh
Q 000511 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~~~~lR 1293 (1455)
.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cccEEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1294 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1294 ~~i~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
++++++||+|.+|.+ |+++|+.... .++ +||||||||++||||++++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~~~----------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------LLR----------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------HHh----------------------cCCHHHhHHHHHHHHHhcCC
Confidence 899999999988875 9999986310 000 69999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhhCEEEEEeC-CeEEEeC
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDH-GHLVEQG 1433 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~-G~ive~G 1433 (1455)
++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++. + ..||+|++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999998764 47999999999984 4 56899999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=323.43 Aligned_cols=207 Identities=28% Similarity=0.361 Sum_probs=172.0
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|.++.|..... ..++++||||++.+||..+|+|+||||||||.++|+|..+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~~--~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGKF--AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCcc--hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 4788999999976421 22579999999999999999999999999999999999999999999987
Q ss_pred --cEEEEcCCCCC-C--CcCHHHHhccCC-----CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 --SIAYVPQVPWI-L--SGTIRDNILFGK-----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 --~i~y~~Q~p~l-~--~~ti~~nI~~g~-----~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.|-+|+|+|.- + .-||++-|.-+. +-.+++..++++..+|.+... ......|||||||||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l----------~R~P~eLSGGQ~QRi 150 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFL----------DRRPHELSGGQRQRI 150 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHH----------hcCchhcChhHHHHH
Confidence 38899999973 2 348888875322 222345677888888866432 344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
||||||..+|+++|||||||+||+.+...|++-+..-...++-|.|+|||++..+.+ ||||++|++|+++|.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999986433223455699999999999987 9999999999999999988886
Q ss_pred hc
Q 000511 818 VS 819 (1455)
Q Consensus 818 ~~ 819 (1455)
..
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 43
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=343.28 Aligned_cols=217 Identities=22% Similarity=0.325 Sum_probs=177.8
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcC--CCCCCceEEECCEeCCCCChHHHhc-
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDLRG- 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl--~~~~~G~I~IdG~di~~i~~~~lR~- 1294 (1455)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4999999999963 3699999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ccEEEeCCCCCCCC-cHHHhcCcCCC----C---ChHHHHHHHHHhcHHHHHHhCCCc-hhhhcCCC-CCChhHHHHHHH
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI-SFSVGQRQLICL 1364 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~g-TIreNLdp~~~----~---~d~ei~~aL~~~~l~~~i~~lgLd-t~v~e~G~-~LSgGQrQrl~L 1364 (1455)
.++++||+|.+|++ |+++|+..... . .+.+-.+.. ....+.++.+|+. ...+.... .||||||||++|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 58999999999987 79999753210 0 010000111 1123334444665 34455444 599999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh--hCEEEEEeCCeEEEeCChhHH
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G~p~eL 1438 (1455)
|||++++|+|+||||||++||.++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+|+++
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999998764 47999999999999875 799999999999999999844
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=342.54 Aligned_cols=210 Identities=24% Similarity=0.383 Sum_probs=177.2
Q ss_pred EEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEE
Q 000511 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1455)
Q Consensus 1220 ~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~V 1299 (1455)
+++||+++ .+|+|+||+|++||++||+|+||||||||+++|.|++++ +|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788774 289999999999999999999999999999999999864 99999999999988888888899999
Q ss_pred eCCCC-CCCCcHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc------
Q 000511 1300 PQSPF-LFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------ 1370 (1455)
Q Consensus 1300 pQdp~-lf~gTIreNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr------ 1370 (1455)
||++. ++..|+++|+..+... +..+. .....+.++.+|++.........||+|||||++||||+++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 99985 4567999999764321 11111 1123345555577666666777899999999999999997
Q ss_pred -CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1371 -SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1371 -~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+|++|||||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998764 47899999999997755 899999999999999999998753
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=321.33 Aligned_cols=164 Identities=33% Similarity=0.449 Sum_probs=150.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+.+ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
+||++.++++|++||+... ....||+|||||++||||++++|++++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ECCCCccccccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999998642 13479999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCCe
Q 000511 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1428 (1455)
|||++||.++.+.+.+.|++. ++|+|++||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999876 689999999999888899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=382.67 Aligned_cols=226 Identities=24% Similarity=0.334 Sum_probs=156.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHh------cCC---CCCCce------------
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLT---PICGGQ------------ 1276 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~------rl~---~~~~G~------------ 1276 (1455)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 478888752 2599999999999999999999999999998764 111 122233
Q ss_pred EEECCEeCCCCC----------hHHHhcccE---------EEeCCCCCCC-----------CcHHHhcCcCCC-------
Q 000511 1277 ILVDGLNIINTP----------VRDLRGRFA---------VVPQSPFLFE-----------GSLRDNLDPFHM------- 1319 (1455)
Q Consensus 1277 I~IdG~di~~i~----------~~~lR~~i~---------~VpQdp~lf~-----------gTIreNLdp~~~------- 1319 (1455)
|.||..++..-+ .+.+|.-.+ +-++.-.+.+ |+++.|+.+...
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 344444333211 123333332 2222211211 345555433111
Q ss_pred -----C------------ChH-----HHHHHHHHh----c---HHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1320 -----N------------DDL-----KIWSVLEKC----H---VKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1320 -----~------------~d~-----ei~~aL~~~----~---l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
+ +-. .+.++++-. + ..+.++.+||+. .++.....||||||||+.|||||+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~ 846 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 846 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh
Confidence 0 101 122222221 1 122344458875 467777899999999999999999
Q ss_pred cCC---CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEE------eCCeEEEeCChhHHh
Q 000511 1370 KSS---KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1370 r~~---~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~p~eLl 1439 (1455)
++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++.
T Consensus 847 ~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 847 KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999 9999999999999999999999998764 588999999999999999999999 799999999999999
Q ss_pred ccCCcHHHHHH
Q 000511 1440 QDECSVFSSFV 1450 (1455)
Q Consensus 1440 ~~~~s~f~~l~ 1450 (1455)
+++.+.=.+.+
T Consensus 927 ~~~~s~t~~~l 937 (943)
T PRK00349 927 KVEASYTGRYL 937 (943)
T ss_pred hCcccHHHHHH
Confidence 88765444433
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=339.29 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=168.7
Q ss_pred ceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC----CCceEEECCEeCCCCChHHHhcccEEEeCCCC-CC-C-
Q 000511 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LF-E- 1307 (1455)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~----~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~-lf-~- 1307 (1455)
+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998754 233468999999995 34 3
Q ss_pred CcHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000511 1308 GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1455)
Q Consensus 1308 gTIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEa 1380 (1455)
-|+++|+... +... ++. +....+.++.+|++ ........+||+|||||++||||++++|+|||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLS-KQA-----RALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred cCHHHHHHHHHHHcCccH-HHH-----HHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4898887421 1111 110 11123334444565 456667778999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHHH
Q 000511 1381 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1381 TS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~ 1448 (1455)
|++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 999999999999999987643 7899999999999975 8999999999999999999998766555554
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=336.96 Aligned_cols=452 Identities=16% Similarity=0.179 Sum_probs=313.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh--h---HHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000511 333 TQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD--G---EIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL 406 (1455)
Q Consensus 333 ~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~--g---~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~ 406 (1455)
....|...++..+.|..|..-+.+|-|.-....+-.... + ..-..+..|+........ ....+..+.+.++.-.
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~ 183 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFT 183 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346677788999999999999999999877543321111 1 122477778877766433 3334445555555555
Q ss_pred HHHHHHhHHHH---------HHHH--HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHhCc
Q 000511 407 YLLYTQVKFAF---------VSGL--AITILLIPVNKWIANLIAN----ATEKMMKQKDERIRRTGEILTHIRTLKMYGW 471 (1455)
Q Consensus 407 ~lL~~~lg~a~---------l~g~--~v~~~~~~~~~~~~~~~~~----~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~ 471 (1455)
.+||..-|.-+ +.|. .++++.++...+++-++++ ...+..+.-..--.....+..+...|-+|+.
T Consensus 184 ~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~G 263 (604)
T COG4178 184 GILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRG 263 (604)
T ss_pred HHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 56664433110 1111 1122233333344434433 3222222222222345578889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 000511 472 EQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT---LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSF 548 (1455)
Q Consensus 472 e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~L~~~~~ft~l~l~~~l~~pl~~l 548 (1455)
|+...+++++.-..=++..++..........+...... +++.+ .++=.+..++++.|.+.++-..|+.+...+..+
T Consensus 264 E~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l-i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL-IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH-hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99887777665443333333222222111111111111 11111 111124577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC---CchhhhhhcCCCCcccCCCccC-CCCCceEEEEcceEeecCCCcccccccce
Q 000511 549 PWVINGLIDAFISIRRLTRFLGCSE---YKHELEQAANSPSYISNGLSNF-NSKDMAVIMQDATCSWYCNNEEEQNVVLN 624 (1455)
Q Consensus 549 ~~~i~~~~~a~~s~~RI~~fL~~~e---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~sf~w~~~~~~~~~~~l~ 624 (1455)
...++.+.+=+++..|+.+|-..-+ .++.... . . ...... ...+..|.++|++..-+.. .+.++
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~-----~-~-~~~~~~~~~~~~~i~~~nl~l~~p~~-----~~ll~ 410 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPA-----R-T-GRRIDFDDNADHGITLENLSLRTPDG-----QTLLS 410 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccC-----c-c-cccccccccccceeEEeeeeEECCCC-----Ceeec
Confidence 9999999999999999999985422 1110000 0 0 000000 0115789999999987643 24599
Q ss_pred eceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEc-C-cEEEEcCCCCCCCcCHHHHhccCC---CCCHHHH
Q 000511 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS-G-SIAYVPQVPWILSGTIRDNILFGK---NYDPQSY 699 (1455)
Q Consensus 625 ~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~-~-~i~y~~Q~p~l~~~ti~~nI~~g~---~~~~~~~ 699 (1455)
+.||++++|+.+.|.|+||||||||+++|.|..|--+|+|... + .+-|+||.|.++.||.||-|++.. +++++.+
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 9999999999999999999999999999999999999999887 3 489999999999999999999874 2788999
Q ss_pred HHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC
Q 000511 700 SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779 (1455)
Q Consensus 700 ~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~ 779 (1455)
.+++..|+|.+-++.+.+-++ =...||||||||||+||.++++|++++|||.|||||++++..+++. +.+ .+.
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~-~lp 563 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKE-ELP 563 (604)
T ss_pred HHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHh-hCC
Confidence 999999999988777654332 3458999999999999999999999999999999999999998887 444 567
Q ss_pred CceEEEEccCccccccCCEEEEEeC
Q 000511 780 QKTRILCTHNVQAISAADMVVVMDK 804 (1455)
Q Consensus 780 ~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1455)
+.|+|-|.|+.......++.+.+.+
T Consensus 564 ~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 564 DATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCEEEEeccchhhHHHHhhheeecc
Confidence 8999999999998887777666643
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=336.43 Aligned_cols=197 Identities=27% Similarity=0.376 Sum_probs=163.5
Q ss_pred EEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh----HHHhccc
Q 000511 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGRF 1296 (1455)
Q Consensus 1221 f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~----~~lR~~i 1296 (1455)
++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 469999999999999999999999999999999999999999999999999775542 2467889
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
++++|+|.+|+ .|++||+.+... ...++..+ ...+.++.+|++...+....+||+|||||++|||||+++|
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999997 599999975211 11111111 1223344446655556666789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEE
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1424 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl 1424 (1455)
++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999998764 478999999999988889999885
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=303.47 Aligned_cols=197 Identities=25% Similarity=0.420 Sum_probs=170.9
Q ss_pred EecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCC
Q 000511 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1306 (1455)
Q Consensus 1227 ~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf 1306 (1455)
.|.....++|+|+||++++||.++|.||||||||||++.+.-+.+|++|.++..|.|++..+++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhcC-cCC---CCChH-HHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccC
Q 000511 1307 EGSLRDNLD-PFH---MNDDL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381 (1455)
Q Consensus 1307 ~gTIreNLd-p~~---~~~d~-ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaT 1381 (1455)
.+||.||+- |+. ...|. .-.+-|+++++. ++.+..+..+||||||||++|+|-|---|+||+|||+|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~--------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP--------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc--------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 999999985 332 22232 222333333332 23455666789999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhh-HhhhCEEEEEeCCeEEE
Q 000511 1382 ANVDAQTASILQNAISSEC--KGMTVITIAHRIST-VLNMDEILILDHGHLVE 1431 (1455)
Q Consensus 1382 S~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~t-i~~~DrI~vl~~G~ive 1431 (1455)
|+||..+.+.|.+.|.+++ ++..++.|||+-+. ++.+||++-+..|++-|
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999887 48899999999997 88999999999998744
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=341.50 Aligned_cols=215 Identities=18% Similarity=0.289 Sum_probs=171.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceEEECCEeCCCCChHHHh-cc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR-GR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~IdG~di~~i~~~~lR-~~ 1295 (1455)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 36999999999999999999999999999999999995 69999999999999888776654 57
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcC-C---CCChHHHHHHHHHhc----HHHHHHhCCCch-hhhcCCC-CCChhHHHHHHH
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPF-H---MNDDLKIWSVLEKCH----VKEEVEAVGLET-FVKESGI-SFSVGQRQLICL 1364 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~-~---~~~d~ei~~aL~~~~----l~~~i~~lgLdt-~v~e~G~-~LSgGQrQrl~L 1364 (1455)
++++||+|.+++. |..+|+... . .....+ .++..+ +.+.++.++++. ....... .||||||||++|
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE---PLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccc---cchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 9999999987765 544443211 0 000000 111111 223334446632 2222232 699999999999
Q ss_pred HHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC-CcEEEEeccChhhHhh--hCEEEEEeCCeEEEeCChhHH
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN--MDEILILDHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1365 ARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~-~~TvI~IaHrl~ti~~--~DrI~vl~~G~ive~G~p~eL 1438 (1455)
|||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. +|+|++|++|++++.|++++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999987643 7899999999999987 799999999999999999855
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=356.77 Aligned_cols=228 Identities=27% Similarity=0.452 Sum_probs=184.2
Q ss_pred cEEEEEEEEEecCCCC--cceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC----CceEEECCEeCCCCChHH
Q 000511 1218 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC----GGQILVDGLNIINTPVRD 1291 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~----~G~I~IdG~di~~i~~~~ 1291 (1455)
-++++|++..|..... .+++||||+|.+||.+||||+|||||||+.++|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975433 5999999999999999999999999999999999999987 899999999999998866
Q ss_pred Hh----cccEEEeCCCC-CCCC--cHHHhcC----cCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhc--CCCCCChhH
Q 000511 1292 LR----GRFAVVPQSPF-LFEG--SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE--SGISFSVGQ 1358 (1455)
Q Consensus 1292 lR----~~i~~VpQdp~-lf~g--TIreNLd----p~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e--~G~~LSgGQ 1358 (1455)
.| ++|++|||||+ .++- ||.+-+. .....+.+|. +....+.++..|+...... -...|||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea-----~~~a~elL~~Vgl~~~~~~~~yPheLSGG~ 159 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEA-----RKRAVELLEQVGLPDPERRDRYPHQLSGGM 159 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHH-----HHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence 54 57999999996 4433 5544432 1111111110 0111222333355544433 567899999
Q ss_pred HHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1359 rQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
|||+.||+||..+|++||+||||.+||+.|.+.|.+.|++.. .+.++|+|||++..+.. ||||+||.+|+++|.|++
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~ 239 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999998765 58999999999999976 899999999999999999
Q ss_pred hHHhccCCcHHHHHH
Q 000511 1436 QTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1436 ~eLl~~~~s~f~~l~ 1450 (1455)
+++++++...|.+.+
T Consensus 240 ~~i~~~p~hpYT~~L 254 (539)
T COG1123 240 EEILSNPQHPYTRGL 254 (539)
T ss_pred HHHHhccCCcccHHH
Confidence 999998876665443
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=333.98 Aligned_cols=205 Identities=34% Similarity=0.467 Sum_probs=180.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|... . .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQ-E---IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCC-C---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 36889999998532 1 2359999999999999999999999999999999999999999998876
Q ss_pred -cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHcc
Q 000511 669 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 746 (1455)
.++|++|+|+++..|++||+.++.. .++++..+.++.+++...++..|.|.+|.+.....+||||||||++||||+..
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 4899999999998999999988643 34556778888899988889999999999998999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEec
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 747 ~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 811 (1455)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKER-LRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999988876 433 33348999999999988789999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=358.53 Aligned_cols=188 Identities=27% Similarity=0.363 Sum_probs=158.9
Q ss_pred ccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------------cEEEEcCCCCCCCc-
Q 000511 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILSG- 682 (1455)
Q Consensus 621 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~~- 682 (1455)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++|+.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 359999999999999999999999999999999999999999999876 49999999999975
Q ss_pred CHHHHhccCCCC---CH-HHH---HHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcC
Q 000511 683 TIRDNILFGKNY---DP-QSY---SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755 (1455)
Q Consensus 683 ti~~nI~~g~~~---~~-~~~---~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe 755 (1455)
||+|||.|+.++ +. ++. .++++..+|+.. .+....+|||||||||+|||||+.+|+|+||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~-----------~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY-----------EHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchh-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999986432 22 233 344444444332 455667999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 756 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 756 p~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|||+||+.+.+++.+.+.......++|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999988744221234789999999999865 5999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=356.08 Aligned_cols=202 Identities=28% Similarity=0.422 Sum_probs=169.7
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------c
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 669 (1455)
.++++|+++.|+.+ ..+|+|+||++++|++++|+|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGK-----TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCC-----CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 37899999999421 2359999999999999999999999999999999999999999999986 4
Q ss_pred EEEEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
||||+|++.+|. .||+|||.|+.. .+. ++..++++..+|+.... ....+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMG 146 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999985 599999998743 222 34556667777754433 34458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|||+.+|+++|||||||+||+.+.+.+.+.+ .... ..+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999888763 3212 23789999999998765 5999999999999999999998653
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=338.93 Aligned_cols=194 Identities=27% Similarity=0.364 Sum_probs=163.3
Q ss_pred eeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCCCC-CcHHHhc
Q 000511 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNL 1314 (1455)
Q Consensus 1236 L~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~-gTIreNL 1314 (1455)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CcC-----CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHH
Q 000511 1315 DPF-----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389 (1455)
Q Consensus 1315 dp~-----~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te 1389 (1455)
... ...++++..+ .+.+.++.+|++.........||||||||++|||||+++|++|||||||++||+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 642 1122222111 123344445666656666678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1390 SILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1390 ~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999998764 37899999999999875 8999999999999999887663
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=338.40 Aligned_cols=195 Identities=29% Similarity=0.393 Sum_probs=160.6
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEe-CCCCCC-CCcH
Q 000511 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP-QSPFLF-EGSL 1310 (1455)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~Vp-Qdp~lf-~gTI 1310 (1455)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 667676 4699
Q ss_pred HHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHH
Q 000511 1311 RDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387 (1455)
Q Consensus 1311 reNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~ 1387 (1455)
+||+.... ..++++..+. ..+.++.+|++.........||+|||||++||||++++|++|||||||++||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 99986422 1222222221 122333346655455555679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1388 TASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1388 te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
+.+.+.+.|++.. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999998764 37899999999998866 8999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=353.13 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=168.1
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|+.... ..++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~--~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTK--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCc--ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 678999999963211 12469999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.|+|++|++.++. .|++|||.++.. .+. ++..++++..+|.+. .......||||||||
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-----------~~~~~~~LSgGqkQR 148 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK-----------HDSYPSNLSGGQKQR 148 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 4899999999985 699999987532 222 233455555555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1455)
|+|||||..+|+++|||||||+||+.+.+.+++. +..-. ..+.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999998876 33211 237899999999999865 99999999999999999999
Q ss_pred HHh
Q 000511 816 LAV 818 (1455)
Q Consensus 816 l~~ 818 (1455)
+..
T Consensus 228 v~~ 230 (343)
T TIGR02314 228 IFS 230 (343)
T ss_pred HHc
Confidence 864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=349.91 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=171.1
Q ss_pred CCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC---------
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 668 (1455)
.+..++++|++|.|+.... ...++|+|+||+|++|++++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 3457899999999964211 112469999999999999999999999999999999999999999998763
Q ss_pred --------------------cEEEEcCCC--CCCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCC
Q 000511 669 --------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGD 719 (1455)
Q Consensus 669 --------------------~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd 719 (1455)
.++||+|+| ++++.||+|||.|+.. .+++ +..+.++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------- 167 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--------- 167 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 279999998 7899999999998742 2222 2333444444421
Q ss_pred cccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCE
Q 000511 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADM 798 (1455)
Q Consensus 720 ~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~ 798 (1455)
...++.+.+||||||||++|||||..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+
T Consensus 168 -~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~-L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 168 -SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL-ILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 224667789999999999999999999999999999999999999988876 3331235789999999999875 5999
Q ss_pred EEEEeCCeEEEecCHHHHHh
Q 000511 799 VVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 799 i~~l~~G~i~~~g~~~~l~~ 818 (1455)
|++|++|++++.|+++++..
T Consensus 246 i~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=321.63 Aligned_cols=222 Identities=26% Similarity=0.433 Sum_probs=190.1
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i 1296 (1455)
-++.+|++.+|.. -.+++||||++++||.+|++|||||||||+++++.|+|+|++|+|.++|.||..++++.. |..|
T Consensus 4 lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 4 LLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 3678999999964 359999999999999999999999999999999999999999999999999999998875 4458
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC------------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~------------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1455)
+--.|.+-+|++ |+-||+..... ....+-.++.+++ .+.++.+||+...++...+||+||++|+-
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~vgL~~~a~~~A~~LsyG~qR~LE 159 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFVGLGELADRPAGNLSYGQQRRLE 159 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHcCCchhhcchhhcCChhHhHHHH
Confidence 888999999987 99999854311 0000112222222 34455558888888888899999999999
Q ss_pred HHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcC--CcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1364 LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
|||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-||++.+++ ||||+||+.|+++..|+|+|..+
T Consensus 160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 99999999999999999999999999999999988764 4899999999999987 89999999999999999999998
Q ss_pred cCC
Q 000511 1441 DEC 1443 (1455)
Q Consensus 1441 ~~~ 1443 (1455)
++.
T Consensus 240 dp~ 242 (250)
T COG0411 240 NPR 242 (250)
T ss_pred CHH
Confidence 763
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=371.96 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=182.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceEEECCEeCCCCChHH-Hhc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--~~G~I~IdG~di~~i~~~~-lR~ 1294 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5899999999963 4699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ccEEEeCCCCCCCC-cHHHhcCcCCC------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1295 ~i~~VpQdp~lf~g-TIreNLdp~~~------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
+++||||+|.+|+. |++||+.+... .+.++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 89999999988875 99999975421 11111111 13344555577655555666899999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
|+.+|+|||||||||+||+++...+.+.|++.. ++.|||+|||+++.+.. ||||++|++|++++.|+++++..
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 999999999999999999999999999998763 47899999999999876 89999999999999999988743
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=369.05 Aligned_cols=215 Identities=24% Similarity=0.389 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHh-ccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR-GRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR-~~i 1296 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+....+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999888776655 469
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+|+||++.+|++ |++||+.......+ +.. ..+.+.++.+|++.........||||||||++|||||+++|+||
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASM-----QKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHH-----HHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998876 99999976432111 111 11233444456665555556689999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1376 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999998763 47899999999999875 89999999999999999998865
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.49 Aligned_cols=199 Identities=39% Similarity=0.692 Sum_probs=175.3
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
.+.|+.|.|+.. .++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 456888998643 2359999999999999999999999999999999999999999998854
Q ss_pred ---cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHc
Q 000511 669 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 745 (1455)
.++|++|+|.+++.|++||+.++.+++.++.+++++++++...++.+|.|+++.++....+||||||||++||||++
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 38999999999999999999987766666778899999998888889999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHH-hhcCcccCCceEEEEccCccccccCCEEEEEeCCe
Q 000511 746 HGSDIYMLDDVLSAVDAQVARWILSN-AIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1455)
Q Consensus 746 ~~~~illlDep~s~lD~~~~~~i~~~-~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1455)
.+|+++||||||++||+.+.+.+.+. ++......+.|+|++||+.+.++.||++++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988877762 22221234689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=323.41 Aligned_cols=220 Identities=26% Similarity=0.372 Sum_probs=185.7
Q ss_pred cEEEEEEEEEecCCC----------------------CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCc
Q 000511 1218 LIEFQNVTMRYKPSL----------------------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~----------------------~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G 1275 (1455)
.|+++||+.-+..+. ..-++|+||+|+.||...|.|=||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588888888775431 1248899999999999999999999999999999999999999
Q ss_pred eEEECCEeCCCCChHHHh----cccEEEeCCCCCCCC-cHHHhcCcCCCC---Ch----HHHHHHHHHhcHHHHHHhCCC
Q 000511 1276 QILVDGLNIINTPVRDLR----GRFAVVPQSPFLFEG-SLRDNLDPFHMN---DD----LKIWSVLEKCHVKEEVEAVGL 1343 (1455)
Q Consensus 1276 ~I~IdG~di~~i~~~~lR----~~i~~VpQdp~lf~g-TIreNLdp~~~~---~d----~ei~~aL~~~~l~~~i~~lgL 1343 (1455)
+|++||.|+..++..+|| +++++|.|.--||+- ||-||..++-+. +. +...++|+.+||
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL--------- 154 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL--------- 154 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCc---------
Confidence 999999999999988775 579999999999986 999999876432 22 223344555554
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCE
Q 000511 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDE 1420 (1455)
Q Consensus 1344 dt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~Dr 1420 (1455)
+..-......||||+|||+.|||||..+|+||++|||.|+||+--...+|+-+.+.- -++||++|||+|+.... -||
T Consensus 155 ~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 444444566799999999999999999999999999999999999999999886542 37899999999997654 799
Q ss_pred EEEEeCCeEEEeCChhHHhccCCcHH
Q 000511 1421 ILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1421 I~vl~~G~ive~G~p~eLl~~~~s~f 1446 (1455)
|..|++|+|+..|+|+|++.+|..-|
T Consensus 235 IaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred EEEecCCeEEEeCCHHHHHcCccHHH
Confidence 99999999999999999999886433
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=350.87 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=168.3
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------c
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 669 (1455)
.++++|+++.|.. . .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +
T Consensus 6 ~l~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 79 (351)
T PRK11432 6 FVVLKNITKRFGS---N---TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79 (351)
T ss_pred EEEEEeEEEEECC---e---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 5889999999953 2 359999999999999999999999999999999999999999999876 5
Q ss_pred EEEEcCCCCCCCc-CHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
||||+|++.+|.. ||+|||.|+.. .++ ++.+++++..++... .......|||||||||+||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALA 148 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence 9999999999865 99999998743 222 234445555555322 2345568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|||+.+|+++|||||||+||+.+.+.+.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|++.+.|+++++...
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999988776 33311 23789999999999875 5999999999999999999998643
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=312.85 Aligned_cols=159 Identities=33% Similarity=0.518 Sum_probs=148.1
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHHhcccE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFA 1297 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~-~~lR~~i~ 1297 (1455)
|+++|++++|+. .++++|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+. +..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 578999999964 369999999999999999999999999999999999999999999999999988875 45678899
Q ss_pred EEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1455)
Q Consensus 1298 ~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlL 1377 (1455)
++|| ||+|||||++||||++++|++++|
T Consensus 79 ~~~q----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 79 MVYQ----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEEe----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999 999999999999999999999999
Q ss_pred eccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEE
Q 000511 1378 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVE 1431 (1455)
Q Consensus 1378 DEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive 1431 (1455)
||||++||.++.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998764 47899999999998865 89999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=370.66 Aligned_cols=216 Identities=19% Similarity=0.304 Sum_probs=182.7
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH-hccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l-R~~i 1296 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999963 369999999999999999999999999999999999999999999999999988876554 4679
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC----C------ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM----N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~----~------~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1455)
+||||++.+|+. |++||+..... . +.++.. ..+.+.++.+|++...+....+||||||||++||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 999999988876 99999965321 0 111111 1123444555776555555668999999999999
Q ss_pred HHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1366 RAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
|||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999998763 47899999999999876 89999999999999999988754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=326.62 Aligned_cols=194 Identities=25% Similarity=0.336 Sum_probs=164.7
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 689999999964 46999999999999999999999999999999999999999999999999997654 456788999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCC----CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~----~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+||++.+++ .|++||+..... .+++++.++++..+ ++.........||+|||||++||||++++|+
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~g---------l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVG---------LAGFEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcC---------CHHHhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998886 599999965321 12334444555554 4433444556899999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhh-CEEEEE
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILIL 1424 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl 1424 (1455)
+++|||||++||+++.+.+.+.|++.. +++|+|++||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998763 478999999999999766 788776
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=369.10 Aligned_cols=216 Identities=19% Similarity=0.312 Sum_probs=181.3
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHH-Hhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~-lR~~i 1296 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999997665544 46789
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
+|+||++.+|+. |++||+.+... .+..+..+ .+.+.++.+|++........+||||||||++|||||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999999988875 99999975321 11111111 123445555665555555568999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
+.+|++|||||||++||+.+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 99999999999999999999999999998753 47899999999999875 89999999999999999887643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=335.08 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=163.5
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
+++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 2 ELRGLTKSFGG---R---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred eEEEEEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 57889998852 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCCc-CHHHHhccCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVPWILSG-TIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~-ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|+|.+++. |++||+.++.. .++ ++..++++.+++.... .....+||||||||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 144 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKR 144 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHH
Confidence 38999999998876 99999987521 222 2344455555554322 33456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1455)
|+||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988876 333122 37899999999998765 99999999999999999888
Q ss_pred HHh
Q 000511 816 LAV 818 (1455)
Q Consensus 816 l~~ 818 (1455)
+..
T Consensus 224 ~~~ 226 (235)
T cd03261 224 LRA 226 (235)
T ss_pred HcC
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=322.74 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=164.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999987654 567889999
Q ss_pred EeCCCCCC-CCcHHHhcCcCCC-CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEE
Q 000511 1299 VPQSPFLF-EGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1299 VpQdp~lf-~gTIreNLdp~~~-~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILl 1376 (1455)
+||++.++ ..|++||+..... ..++++.++++..++.+. ......+||||||||++||||++++|+++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF---------EDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh---------hcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999876 5799999975432 244556666666655432 233445799999999999999999999999
Q ss_pred EeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEE
Q 000511 1377 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1424 (1455)
Q Consensus 1377 LDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl 1424 (1455)
|||||++||+.+.+.+.+.|++.. +++|+|+|||+...+. .||+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998754 4799999999877665 47999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=350.11 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=169.8
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.. . .+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 13 ~~L~l~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 86 (375)
T PRK09452 13 PLVELRGISKSFDG---K---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86 (375)
T ss_pred ceEEEEEEEEEECC---e---EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 45899999999853 2 359999999999999999999999999999999999999999999886
Q ss_pred cEEEEcCCCCCCCc-CHHHHhccCCCC---CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHH
Q 000511 669 SIAYVPQVPWILSG-TIRDNILFGKNY---DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~---~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRval 740 (1455)
.++||+|++.+|.. ||+|||.|+... ++ ++.+++++..++....+. ...+|||||||||+|
T Consensus 87 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~p~~LSgGq~QRVaL 155 (375)
T PRK09452 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQR-----------KPHQLSGGQQQRVAI 155 (375)
T ss_pred CEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHHH
Confidence 49999999999865 999999987432 22 244556666666544433 345899999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHh
Q 000511 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 741 ARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||||+.+|+++|||||||+||+...+.+.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|+|.+.|+++++..
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999998887776 33211 23789999999999865 599999999999999999999865
Q ss_pred c
Q 000511 819 S 819 (1455)
Q Consensus 819 ~ 819 (1455)
.
T Consensus 235 ~ 235 (375)
T PRK09452 235 E 235 (375)
T ss_pred C
Confidence 3
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=341.55 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=170.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|++|+|+.... ...++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 678999999964321 112469999999999999999999999999999999999999999998875
Q ss_pred ----cEEEEcCCC--CCCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 ----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.++||+|+| .+++.|+.|||.|+.. .++ +++.++++..++..++ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 379999998 7888999999998742 222 3455666666664332 2345679999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
||++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+. .||+|++|++|+++++|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999888775 3321234789999999999885 59999999999999999999
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 230 ~~~~ 233 (288)
T PRK13643 230 DVFQ 233 (288)
T ss_pred HHHc
Confidence 8754
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=349.03 Aligned_cols=201 Identities=30% Similarity=0.409 Sum_probs=169.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------c
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 669 (1455)
.++++|++++|.. ..+|+|+||++++||+++|+|||||||||||++|+|..+|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 4789999999853 2259999999999999999999999999999999999999999999976 4
Q ss_pred EEEEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++||+|++-+|. .||+|||.|+.. .+. ++.+++++..+|+.. ......+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHH
Confidence 999999999986 599999998742 222 344555665555432 2355679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|||+.+|+++|||||||+||+.+.+++.+. +.... ..+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999988776 33211 23789999999999865 5999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=300.99 Aligned_cols=193 Identities=25% Similarity=0.379 Sum_probs=167.2
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
|+|+|++-.|+.. .++|+|+||+|++||++.++||||||||||+|+|.++..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~g-----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 2 IRFENVSKAYPGG-----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred eeehhhhhhcCCC-----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 6889999999754 2359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCC-CcCHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWIL-SGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~-~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
+||+|+|+--|. .-||.||+.|... .. +++..++++..+|.+....+|. .||||+|||
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQR 145 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQR 145 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHH
Confidence 699999999865 4599999998643 22 2456678888899888888775 899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
|+||||+..+|++||-||||-+|||..+..|++- +..-...|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l-feeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL-FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH-HHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999875 33324568899999999999987 5689999999998643
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=340.45 Aligned_cols=207 Identities=28% Similarity=0.443 Sum_probs=169.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|+.... ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4789999999964211 112469999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCC--CCCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHH
Q 000511 669 ---SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1455)
Q Consensus 669 ---~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 736 (1455)
.||||+|+| .+++.|++|||.|+.. .+++ +..++++.++|.. .+........|||||||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 389999998 5778899999998632 2332 3455666666641 11234566799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 737 RvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
|++|||||+.+|+++||||||++||+.+.+++.+. +..... .++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999988776 333122 3789999999999875 59999999999999999998
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=341.23 Aligned_cols=205 Identities=27% Similarity=0.416 Sum_probs=169.8
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|++++|+.... ...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 689999999964221 112469999999999999999999999999999999999999999998876
Q ss_pred ----cEEEEcCCC--CCCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 ----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.|+||+|+| .+++.||+|||.|+.. .++ ++..++++.++|..++. ......||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 389999998 5888899999988632 222 34566677777754332 345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 813 (1455)
|||+|||||+.+|+++||||||++||+.+.+.+.+. +..... .|.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999988776 332112 3789999999999876 5999999999999999999
Q ss_pred HHHHh
Q 000511 814 ADLAV 818 (1455)
Q Consensus 814 ~~l~~ 818 (1455)
+++..
T Consensus 231 ~~~~~ 235 (290)
T PRK13634 231 REIFA 235 (290)
T ss_pred HHHhc
Confidence 88753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=371.74 Aligned_cols=221 Identities=24% Similarity=0.352 Sum_probs=180.1
Q ss_pred cEEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCC----------
Q 000511 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII---------- 1285 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~---------- 1285 (1455)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---HHh-cccEEEeCCC--CCCCC-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCc---hhhhcCC
Q 000511 1286 NTPVR---DLR-GRFAVVPQSP--FLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESG 1351 (1455)
Q Consensus 1286 ~i~~~---~lR-~~i~~VpQdp--~lf~g-TIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLd---t~v~e~G 1351 (1455)
+.+.. .+| ++|++|+|+| .+++. ||++|+.... ..+..+.. ..+.+.++.+|++ .......
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChhhHHhCCC
Confidence 22322 344 5799999999 57764 9999996421 11221211 1122334444663 3456667
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-C-CcEEEEeccChhhHhh-hCEEEEEeCCe
Q 000511 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHGH 1428 (1455)
Q Consensus 1352 ~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1428 (1455)
.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 7899999999999999999999999999999999999999999998864 3 7899999999999865 89999999999
Q ss_pred EEEeCChhHHhccCC
Q 000511 1429 LVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1429 ive~G~p~eLl~~~~ 1443 (1455)
|++.|++++++..+.
T Consensus 247 i~~~g~~~~~~~~~~ 261 (623)
T PRK10261 247 AVETGSVEQIFHAPQ 261 (623)
T ss_pred ecccCCHHHhhcCCC
Confidence 999999999986554
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=365.57 Aligned_cols=211 Identities=24% Similarity=0.384 Sum_probs=177.7
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHHhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~-~~lR~~i 1296 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976543 4567889
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
+||||+|.+|++ |+++|+..... .+..+.. ..+.+.++.+|++.........||||||||++||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 999999998876 99999975321 1111111 12334555557765455556689999999999999999
Q ss_pred cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.+++
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999998764 47899999999999876 899999999999977654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=304.32 Aligned_cols=507 Identities=16% Similarity=0.146 Sum_probs=326.6
Q ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000511 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGY-VLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1455)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (1455)
+...++|.++|+++....+.++....+. .++-.+-+++.+......++ .+.+++.+..++.+.. ......-+|
T Consensus 3 ~ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg~t~~g 76 (546)
T COG4615 3 LLLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLGLTTLG 76 (546)
T ss_pred hHHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3457888899988887766665544333 22222223332211111111 1222222222222221 122233334
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000511 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 423 (1455)
Q Consensus 344 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~g~~v 423 (1455)
..+-..+...+-+|.+.-|....++..++.++.-.+.|+..|...+..+.++.-+.+-+..+...|++.-+..++..++.
T Consensus 77 q~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ 156 (546)
T COG4615 77 QHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVW 156 (546)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444455556678888887777777888999999999999987777777666554444444555555555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000511 424 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE--QIFSSWLMKTRSSEVKHLSTRKYLDAWC- 500 (1455)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e--~~~~~~i~~~R~~El~~~~~~~~~~~~~- 500 (1455)
+++.+..+++...+..++.....+.-|+-.+..+.++.|-|..|...-- ..+.+.+..- .+|.+. +..+...+.
T Consensus 157 ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~-a~~~r~--~~~~~n~f~~ 233 (546)
T COG4615 157 IVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD-AQEYRH--HIIRANTFHL 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc-hHHHHh--hhhhhhHHHH
Confidence 6677777888888888888888889999999999999999999987632 1111111110 111111 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch-hh
Q 000511 501 VFFWATTPTLFSLFTFGLFALMGHQL-DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH-EL 578 (1455)
Q Consensus 501 ~~~~~~~~~~~~~~~f~~~~~~~~~L-~~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~-~~ 578 (1455)
.........+..++....|+...-.. +...+.|....+-.++.|+.++...+|.+..|.++++||.++=..|+..+ ..
T Consensus 234 la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~ 313 (546)
T COG4615 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCC
Confidence 11111222233333333333222112 22244454455667889999999999999999999999998765443322 11
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc
Q 000511 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~ 658 (1455)
.+ . .++-..++++|+.|+|.+. .+-+.-||++|++||++.|+|.||||||||+++++|.++
T Consensus 314 ~q--~------------~p~~~~lelrnvrfay~~~-----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~ 374 (546)
T COG4615 314 PQ--A------------FPDWKTLELRNVRFAYQDN-----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374 (546)
T ss_pred CC--c------------CCcccceeeeeeeeccCcc-----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 00 0 0123468999999999753 244889999999999999999999999999999999999
Q ss_pred CCCcEEEEcCc-------------EEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCccccc
Q 000511 659 LTHGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIG 724 (1455)
Q Consensus 659 ~~~G~i~~~~~-------------i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig 724 (1455)
|++|+|.++|. ++-|.-|-|||..+ ..++. ..++...+-++.-.+.... .+.+|.-+
T Consensus 375 PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs--- 445 (546)
T COG4615 375 PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS--- 445 (546)
T ss_pred CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhh-cccCCccc---
Confidence 99999999983 23344445555432 22222 3445444444444443322 22233222
Q ss_pred CCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeC
Q 000511 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804 (1455)
Q Consensus 725 ~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1455)
...||-|||.|+|+--|+.-+.|||++||=-+-=||+-.++..+..+-.....|||++.||||-.+...|||++.|++
T Consensus 446 --~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~ 523 (546)
T COG4615 446 --NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRN 523 (546)
T ss_pred --ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhc
Confidence 246999999999999999999999999999999999988887776432224569999999999999999999999999
Q ss_pred CeEEEe
Q 000511 805 GQVKWI 810 (1455)
Q Consensus 805 G~i~~~ 810 (1455)
|++++.
T Consensus 524 G~~~e~ 529 (546)
T COG4615 524 GQLSEL 529 (546)
T ss_pred Cceeec
Confidence 999863
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=338.24 Aligned_cols=203 Identities=29% Similarity=0.404 Sum_probs=169.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+.... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQE---KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCCCc---CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 4789999999964211 2359999999999999999999999999999999999999999998876
Q ss_pred -cEEEEcCCCC--CCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.++|++|+|. ++..||+|||.|+.. .++ ++..++++..+|+...+ ....+||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv 149 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRV 149 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHH
Confidence 4899999984 566799999998732 232 34566677777754333 34468999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
+||||++.+|+++||||||++||+.+.+.+++. +..... .|+|+|++||+++.+..||+|++|++|+++..|+++++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999998888775 333122 378999999999998789999999999999999998875
Q ss_pred h
Q 000511 818 V 818 (1455)
Q Consensus 818 ~ 818 (1455)
.
T Consensus 229 ~ 229 (279)
T PRK13650 229 S 229 (279)
T ss_pred c
Confidence 4
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=365.39 Aligned_cols=212 Identities=24% Similarity=0.348 Sum_probs=179.3
Q ss_pred EEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCCh-HHHhcccEEE
Q 000511 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVV 1299 (1455)
Q Consensus 1221 f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~-~~lR~~i~~V 1299 (1455)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++||
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999976654 4467889999
Q ss_pred eCCCCCCCC-cHHHhcCcCCC------CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1300 PQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1300 pQdp~lf~g-TIreNLdp~~~------~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
||++.+|.. |+++|+..... .+.++.++ ...+.++.+|++........+||||||||++|||||+++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999987764 99999975321 12222221 2334455567766666667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999998753 47899999999999875 8999999999999999988874
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=321.89 Aligned_cols=189 Identities=29% Similarity=0.435 Sum_probs=161.3
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|+... .++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDL----PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCC----cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4588999999996421 2359999999999999999999999999999999999999999999875
Q ss_pred --cEEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHcc
Q 000511 669 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 746 (1455)
.++||+|+|.++++|++||+.+...+++++..+ ++. ++++...||||||||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~---~l~---------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG---ALR---------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHH---Hhh---------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 499999999999999999998755444333222 221 345678999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecC
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 747 ~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1455)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKT-IRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999998887775 433 345789999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=346.29 Aligned_cols=201 Identities=32% Similarity=0.435 Sum_probs=167.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------c
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 669 (1455)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 3688999999853 1359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCC-cCHHHHhccCCC-------CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 670 IAYVPQVPWILS-GTIRDNILFGKN-------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 670 i~y~~Q~p~l~~-~ti~~nI~~g~~-------~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
++||+|++.++. .|++|||.|+.. .+. ++..+.++..++.... .....+||||||||
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QR 144 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQR 144 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 999999999987 499999998743 121 2344455555554322 34556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1455)
|+|||||+.+|+++|||||||+||+.+.+.+.+. +.... ..+.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999888776 33312 236899999999998665 99999999999999999999
Q ss_pred HHhc
Q 000511 816 LAVS 819 (1455)
Q Consensus 816 l~~~ 819 (1455)
+...
T Consensus 224 i~~~ 227 (353)
T PRK10851 224 VWRE 227 (353)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=321.89 Aligned_cols=193 Identities=20% Similarity=0.249 Sum_probs=162.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 369999999999999999999999999999999999999999999999999875 34577899999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+||++.+++ .|+++|+...... .+.+ +.+.++.++++...+....+||+|||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~---------~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVG---------ITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHH---------HHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999998874 6999998643211 1222 334444445544444444579999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEE
Q 000511 1376 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILI 1423 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~v 1423 (1455)
||||||++||..+.+.+.+.|++.. +++|+|++||+.+.+.+||.-++
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999998753 57899999999999999987554
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=330.49 Aligned_cols=198 Identities=33% Similarity=0.455 Sum_probs=164.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------cE
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 670 (1455)
++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 3 l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 76 (239)
T cd03296 3 IEVRNVSKRFGD---F---VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNV 76 (239)
T ss_pred EEEEeEEEEECC---E---EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccce
Confidence 678999999853 2 359999999999999999999999999999999999999999998875 48
Q ss_pred EEEcCCCCCCC-cCHHHHhccCCCC-------CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 671 AYVPQVPWILS-GTIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 671 ~y~~Q~p~l~~-~ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
+|++|+|.++. .|++||+.++... +. ++..+.++.++++.. ......+||||||||+
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl 145 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-----------ADRYPAQLSGGQRQRV 145 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHH
Confidence 99999999886 5999999876321 21 223444555555322 2345568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
+||||++.+|+++||||||++||+++.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 146 ALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 999999999999999999999999999888775 333122 37899999999998764 999999999999999998887
Q ss_pred H
Q 000511 817 A 817 (1455)
Q Consensus 817 ~ 817 (1455)
.
T Consensus 225 ~ 225 (239)
T cd03296 225 Y 225 (239)
T ss_pred h
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=330.56 Aligned_cols=197 Identities=28% Similarity=0.396 Sum_probs=162.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc-----cCCCcEEEEcC--------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-----MLTHGSIHASG-------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~-----~~~~G~i~~~~-------- 668 (1455)
++++|+++.|.. +++|+|+||++++||+++|+||||||||||+++|+|.+ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 357889998853 23599999999999999999999999999999999999 99999998865
Q ss_pred -------cEEEEcCCCCCCCcCHHHHhccCCCC----C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 -------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 -------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.++|++|++.+++.|++||+.++... + +++..++++.+++...+...++ +.+||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG 145 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGG 145 (227)
T ss_pred HHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHH
Confidence 38999999998878999999875321 1 2344556666666543332211 4689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecC
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 812 (1455)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 146 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999988876 333 223389999999999876 499999999999999887
Q ss_pred HHH
Q 000511 813 SAD 815 (1455)
Q Consensus 813 ~~~ 815 (1455)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=325.46 Aligned_cols=176 Identities=22% Similarity=0.292 Sum_probs=133.4
Q ss_pred EEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCC-CCCCcHHHhcCcCCC-
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNLDPFHM- 1319 (1455)
Q Consensus 1242 ~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~-lf~gTIreNLdp~~~- 1319 (1455)
+|..||.+|++||+|-||||++++|.|.++|++|+ ..+ -+++|=||--. -|+|||++-|.--..
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 44567899999999999999999999999999998 222 26888888542 388999987632111
Q ss_pred -CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHH
Q 000511 1320 -NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398 (1455)
Q Consensus 1320 -~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~ 1398 (1455)
+.+.-.+ .+.++.+.|+..+...-.+|||||.||++||-||.|++++.+||||++.||.+-.-.+-++||+
T Consensus 429 ~~~~s~~~--------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 429 AFGSSYFK--------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred hcccchhH--------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 1111111 1233344666666666668999999999999999999999999999999999999888999987
Q ss_pred hc--CCcEEEEeccChhhHhh-hCEEEEEeC--CeEEEeCChhHHh
Q 000511 1399 EC--KGMTVITIAHRISTVLN-MDEILILDH--GHLVEQGNPQTLL 1439 (1455)
Q Consensus 1399 ~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~p~eLl 1439 (1455)
.. .++|.++|-|++-.+.. +||++|.+. |+=-....|..+.
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~GePg~~g~a~~P~~mr 546 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFEGEPGKHGHASPPMSMR 546 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEecCCCccCcCCCCccHH
Confidence 53 58899999999998865 799999963 3222233455554
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=326.86 Aligned_cols=205 Identities=27% Similarity=0.447 Sum_probs=173.5
Q ss_pred CCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC---------
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------- 668 (1455)
....++++|+++.|+.... .++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPD---TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 4467899999999964321 2359999999999999999999999999999999999999999999876
Q ss_pred ----cEEEEcCCCCCCCcCHHHHhccCCC-CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHH
Q 000511 669 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1455)
Q Consensus 669 ----~i~y~~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARa 743 (1455)
.++|++|+|.+++.|++||+.++.. .+...+.+..+...++.-++.++.|.++..+.+..+|||||||||+||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 3899999999999999999987643 22222333344455666778888788888899999999999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeE
Q 000511 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1455)
Q Consensus 744 ly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1455)
++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQA-LYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988776 333 3446899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=347.26 Aligned_cols=202 Identities=27% Similarity=0.385 Sum_probs=169.7
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC--cEEEEcC---------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG--------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~--G~i~~~~--------- 668 (1455)
..++++|++++|.. . .+|+|+||++++|++++|+|||||||||||++|+|..+|++ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---N---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEECC---e---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 45889999999953 2 35999999999999999999999999999999999999999 9999876
Q ss_pred --cEEEEcCCCCCCCc-CHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 --SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.|+||+|++.+|.. ||+|||.|+.. .++ ++.+++++..+|+... .....+|||||||||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHH
Confidence 49999999999865 99999998642 222 3455666666665433 334568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC--CceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~--~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~ 815 (1455)
+|||||..+|+++|||||||+||+...+++.+. +.....+ +.|+|+|||+.+.+. .||+|++|++|++++.|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~-l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREE-IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH-HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999998888776 3321222 689999999999865 599999999999999999999
Q ss_pred HHhc
Q 000511 816 LAVS 819 (1455)
Q Consensus 816 l~~~ 819 (1455)
+...
T Consensus 226 ~~~~ 229 (362)
T TIGR03258 226 LYDA 229 (362)
T ss_pred HHhC
Confidence 8654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-35 Score=331.80 Aligned_cols=203 Identities=22% Similarity=0.293 Sum_probs=170.0
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc---CCCcEEEEcC---------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM---LTHGSIHASG--------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~---~~~G~i~~~~--------- 668 (1455)
.++++|+++.|+. . ++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK---K---QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC---E---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 4678999999952 2 35999999999999999999999999999999999974 6899999876
Q ss_pred ----cEEEEcCCCCCCCcCHHHHhccCCCC---------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 ----SIAYVPQVPWILSGTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 ----~i~y~~Q~p~l~~~ti~~nI~~g~~~---------~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.++|++|+|.+++.|++||+.++... ++++..++++.+++...+.. ...+++.+||||||
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 148 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQ 148 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHH
Confidence 48999999999999999999875311 12245567777777554432 23456779999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
|||+||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL-LKE-LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999998888776 433 345789999999999876 59999999999999999988
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 227 ~~~~ 230 (246)
T PRK14269 227 EFFE 230 (246)
T ss_pred HHHh
Confidence 8753
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=323.47 Aligned_cols=195 Identities=24% Similarity=0.310 Sum_probs=164.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 6999999999964 3699999999999999999999999999999999999999999999999998752 3456799
Q ss_pred EEeCCCCCCCC-cHHHhcCcCC----CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1298 ~VpQdp~lf~g-TIreNLdp~~----~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
|+||+|.++++ |++||+.... ...++.+.+.++.. |++.........||+|||||++||||++++|
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV---------GLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc---------CChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 9999985421 11122233333333 4444444555679999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeC
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDH 1426 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~ 1426 (1455)
++|+|||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999998653 47899999999999875 799999975
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=364.04 Aligned_cols=214 Identities=25% Similarity=0.338 Sum_probs=148.1
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHh------cCCC----C-----------CCce
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLTP----I-----------CGGQ 1276 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~------rl~~----~-----------~~G~ 1276 (1455)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 588888862 2599999999999999999999999999998333 1111 1 1123
Q ss_pred EEECCEeCCCCCh----------HHHhcccEEEeCC------CCCCCC--------------cHHHhcCcC---------
Q 000511 1277 ILVDGLNIINTPV----------RDLRGRFAVVPQS------PFLFEG--------------SLRDNLDPF--------- 1317 (1455)
Q Consensus 1277 I~IdG~di~~i~~----------~~lR~~i~~VpQd------p~lf~g--------------TIreNLdp~--------- 1317 (1455)
|.||..+|..-++ +.+|.-++=.|+- +-.|+- .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 6666666643332 2455555544431 222221 111111000
Q ss_pred ---CCCChH-----------------HHHHHHHHh-------cHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHHc
Q 000511 1318 ---HMNDDL-----------------KIWSVLEKC-------HVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1318 ---~~~~d~-----------------ei~~aL~~~-------~l~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAlL 1369 (1455)
..+.++ .+.++++-. ...+.++.+||+. .++.....|||||+||++|||+|.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 001111 011111110 1112333448875 477788899999999999999999
Q ss_pred c---CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEE------eCCeEEEeCChhHH
Q 000511 1370 K---SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVEQGNPQTL 1438 (1455)
Q Consensus 1370 r---~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~p~eL 1438 (1455)
+ +|+++||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 589999999999999999999999998764 588999999999999999999999 79999999999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=349.04 Aligned_cols=200 Identities=28% Similarity=0.408 Sum_probs=168.0
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------c
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~ 669 (1455)
.++++|++++|.. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~---~---~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYGD---V---VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeCC---e---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 3789999999853 2 359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCc-CHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
|+||+|++.++.. ||+|||.|+.. .+. ++..++++.++++... .....+|||||||||+||
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999999998865 99999998642 222 3455666766665433 234468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHh
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
|||+.+|+++|||||||+||+...+.+.+. +..... .+.|+|+|||+++.+. .||+|++|++|++.+.|+++++..
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999998888775 332122 3789999999999876 599999999999999999998854
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=319.72 Aligned_cols=196 Identities=27% Similarity=0.434 Sum_probs=168.5
Q ss_pred cEEEEEEEEEecCCC-------CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 000511 1218 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~-------~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~ 1290 (1455)
.++++|++..|+... -.+++||||+|++||.+||||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 478999999996432 26899999999999999999999999999999999999999999999999987766
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHcc
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr 1370 (1455)
....++++.+.|+++|+.+. ........||||||||++|||||.-
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~--------~~~ryPhelSGGQrQRi~IARALal 126 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEE--------FLYRYPHELSGGQRQRIGIARALAL 126 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHH--------HhhcCCcccCchhhhhHHHHHHHhh
Confidence 11123456677777765432 2344556799999999999999999
Q ss_pred CCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHH
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~ 1447 (1455)
+|++++.|||||+||.-.++.|.+.+.+.- .+-|.++|||+++.++. ||||.||..|+|||.|+-+++.+++...|-
T Consensus 127 ~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYT 206 (268)
T COG4608 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYT 206 (268)
T ss_pred CCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHH
Confidence 999999999999999999999999887653 38899999999999987 899999999999999999999998877776
Q ss_pred HHH
Q 000511 1448 SFV 1450 (1455)
Q Consensus 1448 ~l~ 1450 (1455)
+..
T Consensus 207 k~L 209 (268)
T COG4608 207 KAL 209 (268)
T ss_pred HHH
Confidence 554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=363.78 Aligned_cols=212 Identities=19% Similarity=0.260 Sum_probs=180.2
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 35999999999999999999999999999999999999999999999999887777777888899
Q ss_pred EEeCCCCC--C-------CCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1298 VVPQSPFL--F-------EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1298 ~VpQdp~l--f-------~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
++||++.+ + .-|+++|+.... ..++++.++++.. |++.........||||||||++|||||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQF---------GITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHc---------CCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999753 2 348899886431 1123344444444 554444555668999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhcc
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~ 1441 (1455)
+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|++++++++
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 99999999999999999999999999998764 37899999999999876 899999999999999999998764
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=381.39 Aligned_cols=211 Identities=24% Similarity=0.288 Sum_probs=155.0
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHH---------HHhcCCCCCC----c----eEEEC
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN---------ALFRLTPICG----G----QILVD 1280 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~---------~L~rl~~~~~----G----~I~Id 1280 (1455)
.++++|++. ..|+|+|++|++||.+||.|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 578888762 2799999999999999999999999999999 4445332211 1 24666
Q ss_pred CEeCCCCCh----------HHHhc---------c-----cEEEeCC------------------C---------------
Q 000511 1281 GLNIINTPV----------RDLRG---------R-----FAVVPQS------------------P--------------- 1303 (1455)
Q Consensus 1281 G~di~~i~~----------~~lR~---------~-----i~~VpQd------------------p--------------- 1303 (1455)
..++..-+. +++|+ + ..+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 665544322 14441 1 1112221 1
Q ss_pred -----CCCCC-cHHHhcCcCCC-----C-ChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHHHc-
Q 000511 1304 -----FLFEG-SLRDNLDPFHM-----N-DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARALL- 1369 (1455)
Q Consensus 1304 -----~lf~g-TIreNLdp~~~-----~-~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LARAlL- 1369 (1455)
+.+.+ ||.|||++... . +.+++.+.+ +.++.+||+.. .+.....||||||||++|||||+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 13334 78888866421 0 112232222 23444588765 68888899999999999999998
Q ss_pred --cCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEEe------CCeEEEeCChhHHhc
Q 000511 1370 --KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILD------HGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1370 --r~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~------~G~ive~G~p~eLl~ 1440 (1455)
++|+++||||||++||..+.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|+++..
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 5999999999999999999999999998764 5889999999999998899999996 799999999999986
Q ss_pred c
Q 000511 1441 D 1441 (1455)
Q Consensus 1441 ~ 1441 (1455)
.
T Consensus 907 ~ 907 (1809)
T PRK00635 907 L 907 (1809)
T ss_pred c
Confidence 3
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=393.90 Aligned_cols=220 Identities=24% Similarity=0.324 Sum_probs=190.5
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
..|+++|++++|+++..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.++|.|+.. +....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996444579999999999999999999999999999999999999999999999999975 567789999
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
+++||++.+|+. |++|||.++.. .+.++..+ ...+.++.+||+...+....+||||||||++|||||+.+|
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999975 99999975421 12222211 1234445557776667777789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccC
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~ 1442 (1455)
+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++++|.++-
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 999999999999999999999999988779999999999999975 8999999999999999999997643
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=339.44 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=168.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+.... ....+|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3789999999964321 112469999999999999999999999999999999999999999998742
Q ss_pred -------------------------cEEEEcCCC--CCCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhh
Q 000511 669 -------------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISL 714 (1455)
Q Consensus 669 -------------------------~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~ 714 (1455)
.||||+|+| .++..||+|||.|+.. .++ ++..++++.++|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-- 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY-- 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh--
Confidence 379999987 5778899999998742 232 2345566666664322
Q ss_pred ccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc
Q 000511 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794 (1455)
Q Consensus 715 l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 794 (1455)
.+....+||||||||++|||||+.+|+++||||||++||+...+.+.+. +......|+|+|++||+++.+.
T Consensus 159 --------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 159 --------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred --------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHH
Confidence 2355679999999999999999999999999999999999998888775 3321234789999999999865
Q ss_pred -cCCEEEEEeCCeEEEecCHHHHHh
Q 000511 795 -AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 795 -~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
.||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 599999999999999999988754
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=361.88 Aligned_cols=221 Identities=24% Similarity=0.398 Sum_probs=179.7
Q ss_pred cEEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC-----CCceEEECCEeCCCCChH
Q 000511 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~-----~~G~I~IdG~di~~i~~~ 1290 (1455)
.|+++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999632 24699999999999999999999999999999999999987 799999999999877654
Q ss_pred H---Hh-cccEEEeCCCC--CCC-CcHHHhcCcC----CCCChHHHHHHHHHhcHHHHHHhCCCch---hhhcCCCCCCh
Q 000511 1291 D---LR-GRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSV 1356 (1455)
Q Consensus 1291 ~---lR-~~i~~VpQdp~--lf~-gTIreNLdp~----~~~~d~ei~~aL~~~~l~~~i~~lgLdt---~v~e~G~~LSg 1356 (1455)
. .| ++++||||+|. +++ -|+++|+... ...+.++.. ..+.+.++.+|++. .......+|||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 3 34 57999999985 444 4899997521 111221111 11233344445542 23555668999
Q ss_pred hHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1357 GQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
|||||++|||||+.+|++||||||||+||+.+.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998853 37899999999999875 8999999999999999
Q ss_pred ChhHHhccCC
Q 000511 1434 NPQTLLQDEC 1443 (1455)
Q Consensus 1434 ~p~eLl~~~~ 1443 (1455)
++++++..+.
T Consensus 240 ~~~~~~~~~~ 249 (529)
T PRK15134 240 RAATLFSAPT 249 (529)
T ss_pred CHHHHhhCCC
Confidence 9999976543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=325.89 Aligned_cols=191 Identities=30% Similarity=0.406 Sum_probs=157.9
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------cEE
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 671 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i~ 671 (1455)
+++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 2 ELKGLSKTYGS---V---RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred eeeeeEEEeCC---e---eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 57889998853 2 359999999999999999999999999999999999999999998875 489
Q ss_pred EEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHH
Q 000511 672 YVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1455)
Q Consensus 672 y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARa 743 (1455)
|++|+|.++. .|++||+.++.. .+. ++..+.++.+++.... .....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHH
Confidence 9999998875 599999987532 222 2345566666665433 33446899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 744 ly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988876 333122 37899999999998765 9999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=336.63 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=167.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|+.. .++|+|+||++++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCCC-----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 47899999999531 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCC--CCCCcCHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 -SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 -~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.++|++|+| .+++.|++||+.|+.. .+ ++++.++++.+++...... ....||||||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv 147 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRV 147 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHH
Confidence 489999998 5788899999998632 22 2345667777777544333 3348999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l 816 (1455)
+||||+..+|+++||||||++||+.+.+++.+. +.....+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999988776 4331234789999999999985 5999999999999999998664
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=338.20 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=167.8
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+.... ...++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999964221 112469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.||||+|+| .+++.|++|||.|+.. ++.+ +..+.++.++|+.+ .....+.+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq 150 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQ 150 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 379999998 5788899999998632 2332 23344445554322 1235677999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecC
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 812 (1455)
|||++||||++.+|+++||||||++||+.+.+++.+. +.... ..|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999988775 33211 24789999999999875 599999999999999999
Q ss_pred HHHHHh
Q 000511 813 SADLAV 818 (1455)
Q Consensus 813 ~~~l~~ 818 (1455)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988754
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=300.81 Aligned_cols=213 Identities=24% Similarity=0.353 Sum_probs=182.6
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
|+.+|++++-. .+.+|+++||+++|||.+||+||||||||||+++|.|.+.|++|++.++|.++++.+..++-++-++
T Consensus 2 i~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 67889987764 3469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCC-CCCcHHHhcCcCC----C---CChHH--HHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1299 VPQSPFL-FEGSLRDNLDPFH----M---NDDLK--IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1299 VpQdp~l-f~gTIreNLdp~~----~---~~d~e--i~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
.||+..+ |+-|++|-+.++. . ..+++ ..+++.++++..+- +..-..|||||+||+.|||.|
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la---------~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA---------GRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh---------ccchhhcCchHHHHHHHHHHH
Confidence 9999986 8999999986542 1 11333 45677777654321 222236999999999999999
Q ss_pred cc------CCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEEeCCeEEEeCChhHHhc
Q 000511 1369 LK------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1369 Lr------~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
.+ ++++|+||||||+||..-...+.++.|+.. +++.|+.|-|+|+... .||||++|.+|||+..|+|++.+.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 86 357999999999999999999999998875 5899999999999765 589999999999999999999997
Q ss_pred cC
Q 000511 1441 DE 1442 (1455)
Q Consensus 1441 ~~ 1442 (1455)
.+
T Consensus 231 ~E 232 (259)
T COG4559 231 DE 232 (259)
T ss_pred HH
Confidence 54
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=330.63 Aligned_cols=197 Identities=25% Similarity=0.366 Sum_probs=162.5
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
+++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 2 EVRGLTKRFGG---L---VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeeEEEECC---E---EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 57888998852 2 359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCCc-CHHHHhccCCCC-------------CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000511 669 SIAYVPQVPWILSG-TIRDNILFGKNY-------------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~~-ti~~nI~~g~~~-------------~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~L 730 (1455)
.++|++|+|.++.+ |++|||.++... +. ++..+.++..+++ ...+....+|
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGEL 144 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhC
Confidence 38999999998876 999999875321 11 1233334433332 2345567799
Q ss_pred ccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEE
Q 000511 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 809 (1455)
Q Consensus 731 SGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~ 809 (1455)
|||||||++||||+..+|++++|||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999988876 33212257899999999999865 99999999999999
Q ss_pred ecCHHHHH
Q 000511 810 IGSSADLA 817 (1455)
Q Consensus 810 ~g~~~~l~ 817 (1455)
.|+++++.
T Consensus 224 ~~~~~~~~ 231 (236)
T cd03219 224 EGTPDEVR 231 (236)
T ss_pred ecCHHHhc
Confidence 99988874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.82 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=168.6
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG---K---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 3788999998852 2 359999999999999999999999999999999999999999998875
Q ss_pred -cEEEEcCCCCCCCcCHHHHhccCCCC---CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHH
Q 000511 669 -SIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~ti~~nI~~g~~~---~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARal 744 (1455)
.++|++|+|.+++.|++||+.++..+ +.++..+.++.++++.+. ......+||||||||++||||+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHH
Confidence 38999999999989999999876432 234556667777664322 2345668999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHh
Q 000511 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 745 y~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
+.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999998887765 333122 37899999999999775 99999999999999999888753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=331.95 Aligned_cols=203 Identities=24% Similarity=0.332 Sum_probs=168.1
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------ 668 (1455)
..++++|++++|.. . .+|+|+||++++|++++|+||||||||||+++|+|..+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD---F---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC---e---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 35899999999953 2 35999999999999999999999999999999999864 5899998765
Q ss_pred ---------cEEEEcCCCCCCCcCHHHHhccCCC---C-C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 669 ---------SIAYVPQVPWILSGTIRDNILFGKN---Y-D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 669 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++...+. +..+....+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 151 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLS 151 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999998999999987521 1 1 234455566666643322 23456678999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL-IHE-LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998888775 433 3446899999999998864 999999999999999
Q ss_pred cCHHHHH
Q 000511 811 GSSADLA 817 (1455)
Q Consensus 811 g~~~~l~ 817 (1455)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988874
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=362.32 Aligned_cols=214 Identities=24% Similarity=0.369 Sum_probs=178.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCC--CCceEEECCEeCCCCChHH-Hhcc
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRGR 1295 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~--~~G~I~IdG~di~~i~~~~-lR~~ 1295 (1455)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred cEEEeCCCCCCCC-cHHHhcCcCCC-------CChHHHHHHHHHhcHHHHHHhCCCchhh-hcCCCCCChhHHHHHHHHH
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLAR 1366 (1455)
Q Consensus 1296 i~~VpQdp~lf~g-TIreNLdp~~~-------~~d~ei~~aL~~~~l~~~i~~lgLdt~v-~e~G~~LSgGQrQrl~LAR 1366 (1455)
++||||+|.+|+. |+++|+..... .+.++.. ....+.++.+|++... ......||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 9999999988875 99999965321 1111111 1223445555665432 2334579999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHh
Q 000511 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1367 AlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++++..
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMS 229 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCC
Confidence 9999999999999999999999999999998753 47899999999999876 8999999999999999887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=370.44 Aligned_cols=217 Identities=24% Similarity=0.361 Sum_probs=188.9
Q ss_pred cEEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHH---
Q 000511 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~l--- 1292 (1455)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred -hcccEEEeCCCCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000511 1293 -RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1293 -R~~i~~VpQdp~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1455)
|+.++|+||++.+|++ |+.||++... ..+.++ .+....+.++.+|++..++.....||+||+||++||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 5789999999999975 9999997421 111111 11223455666688877777888999999999999999
Q ss_pred HccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhhhCEEEEEeCCeEEEeCChhHHh
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLL 1439 (1455)
Q Consensus 1368 lLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~p~eLl 1439 (1455)
++++|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+..|||+++|++|++++.|+++|..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999998764 489999999999999889999999999999999999886
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=326.15 Aligned_cols=197 Identities=21% Similarity=0.283 Sum_probs=162.7
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------c
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 669 (1455)
++++|++++|.. . .+|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD---F---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC---E---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 357888988852 2 359999999999999999999999999999999999999999998876 4
Q ss_pred EEEEcCCCCCCCc-CHHHHhccCC---CCC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++|++|++.++.. |++||+.++. ..+ +++..+.++.++++.... ....+||||||||++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la 143 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIA 143 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHH
Confidence 8999999988765 9999998642 122 234556667776654322 33458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999888775 332122 37899999999999875 999999999999998887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=327.02 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=174.6
Q ss_pred cEEEEEEEEEecCC------------------CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEE
Q 000511 1218 LIEFQNVTMRYKPS------------------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~------------------~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~I 1279 (1455)
.|+++||+..|+.. ..++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47788888777542 236899999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCChHHHhcccEEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCC
Q 000511 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1355 (1455)
Q Consensus 1280 dG~di~~i~~~~lR~~i~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LS 1355 (1455)
||. +++++|++.+++ .|+++|+.... ..+.++..+.. .+.++..+++..+......||
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~LS 145 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEFSELGEFIYQPVKKYS 145 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHcCCchhhcCCcccCC
Confidence 994 456788887664 59999986421 22333332221 122333367666777777899
Q ss_pred hhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1356 gGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
+|||||++||||++++|+||||||||++||+.+.+.+.+.|.+.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g 225 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999987753 48899999999999876 8999999999999999
Q ss_pred ChhHHhccCCcHHHHH
Q 000511 1434 NPQTLLQDECSVFSSF 1449 (1455)
Q Consensus 1434 ~p~eLl~~~~s~f~~l 1449 (1455)
++++++++....|+..
T Consensus 226 ~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 226 ELDDVLPKYEAFLNDF 241 (264)
T ss_pred CHHHHHHHhHHHHHHH
Confidence 9999988665444433
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=344.99 Aligned_cols=204 Identities=26% Similarity=0.364 Sum_probs=168.9
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
...++++|+++.|.. . .+|+|+||++++|++++|+|||||||||||++|+|..+|++|+|.++|
T Consensus 17 ~~~l~l~~v~~~~~~---~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---Q---HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 346899999999852 1 359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCCCCc-CHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 -SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
.+|||+|++-+|.. ||+|||.|+.. .+. ++..++++..++.... .....+|||||||||+
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVA 159 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 48999999999965 99999998742 222 2344555666654322 3345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
|||||+.+|+++|||||||+||+...+.+.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999888766522111224789999999999865 599999999999999999999865
Q ss_pred c
Q 000511 819 S 819 (1455)
Q Consensus 819 ~ 819 (1455)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 3
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.08 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=157.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|+.. . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGG-H---QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCC-C---eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 5789999998532 1 2359999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|+|.++. .|++||+.++.. .+ +++..++++.+++..... ....+||||||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 146 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQR 146 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999999876 599999987521 12 234566677776654332 2345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeE
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 807 (1455)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988876 33312347899999999999875 999999999974
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=321.89 Aligned_cols=188 Identities=27% Similarity=0.419 Sum_probs=157.1
Q ss_pred EEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------cEEEE
Q 000511 604 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYV 673 (1455)
Q Consensus 604 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------~i~y~ 673 (1455)
++|+++.|+.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG-----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc-----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 56778887531 2359999999999999999999999999999999999999999999876 48999
Q ss_pred cCCC--CCCCcCHHHHhccCCC---CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCC
Q 000511 674 PQVP--WILSGTIRDNILFGKN---YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1455)
Q Consensus 674 ~Q~p--~l~~~ti~~nI~~g~~---~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~ 748 (1455)
+|+| .+++.|++||+.++.. .++++..++++.+++..... ....+||||||||++||||+..+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 4677899999987642 23346677888887764433 233589999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEE
Q 000511 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 808 (1455)
Q Consensus 749 ~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~ 808 (1455)
+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGEL-IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999998888775 43312357899999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=325.03 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=161.1
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------cEEEEc
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVP 674 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y~~ 674 (1455)
+++|+++.|+.... .+++|+|+||+|++|++++|+||||||||||+++|+|..+|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGGG--AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCCc--ceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 57889998863211 12469999999999999999999999999999999999999999999876 589999
Q ss_pred CCCCCCC-cCHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHcc
Q 000511 675 QVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 675 Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 746 (1455)
|+|.++. .|++||+.++.. .+ +++..+.++.++++..+. ....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence 9999887 699999986532 12 234556666666654333 3345899999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEe--CCeEEEecCH
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMD--KGQVKWIGSS 813 (1455)
Q Consensus 747 ~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~--~G~i~~~g~~ 813 (1455)
+|+++||||||++||+.+.+.+++. +.... ..++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999988876 33211 23789999999999875 599999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=293.62 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=186.3
Q ss_pred ccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCC---------
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT--------- 1287 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i--------- 1287 (1455)
..++++|+..+|.+. .|||+||++.++|+.|.|+|-|||||||+++++.=+-.|+.|+|.++|..|...
T Consensus 5 ~~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 5 NALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred cceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 368999999999765 599999999999999999999999999999999999999999999999887532
Q ss_pred ----ChHHHhcccEEEeCCCCCCCC-cHHHhcC--cCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChh
Q 000511 1288 ----PVRDLRGRFAVVPQSPFLFEG-SLRDNLD--PFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVG 1357 (1455)
Q Consensus 1288 ----~~~~lR~~i~~VpQdp~lf~g-TIreNLd--p~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgG 1357 (1455)
.++.+|+++++|.|.--|.+- |+-||.- |-. ...++.+.+|. .++...|++..-..-...||||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae------~~L~kVGi~ek~~~YP~~LSGG 156 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAE------KYLAKVGIAEKADAYPAHLSGG 156 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHH------HHHHHhCchhhhhcCccccCch
Confidence 256789999999999888875 9999973 322 22233332221 1233335555555566789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCCh
Q 000511 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNP 1435 (1455)
Q Consensus 1358 QrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p 1435 (1455)
|+||.+|||||.-+|+++++|||||+||++---.+.++|++.. .++|.++|||.+...++ +..|+.+.+|+|-|+|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999988888888765 59999999999999998 699999999999999999
Q ss_pred hHHhccCCcH
Q 000511 1436 QTLLQDECSV 1445 (1455)
Q Consensus 1436 ~eLl~~~~s~ 1445 (1455)
+++..+|.|.
T Consensus 237 ~qvf~nP~S~ 246 (256)
T COG4598 237 EQVFGNPQSP 246 (256)
T ss_pred HHHhcCCCCH
Confidence 9999998763
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=329.94 Aligned_cols=204 Identities=26% Similarity=0.333 Sum_probs=167.8
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 668 (1455)
..++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD---F---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC---c---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 46899999999853 2 259999999999999999999999999999999999987 489998754
Q ss_pred ---------cEEEEcCCCCCCCcCHHHHhccCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 669 ---------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 669 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
.++|++|+|.+++.|++|||.++.. .+. ++..++++.+++...+. + ....+..+||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LS 152 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLS 152 (254)
T ss_pred cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCC
Confidence 3899999999998999999987642 122 23344555555532221 1 2344677999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988875 433 3456899999999999765 999999999999999
Q ss_pred cCHHHHHh
Q 000511 811 GSSADLAV 818 (1455)
Q Consensus 811 g~~~~l~~ 818 (1455)
|+++++..
T Consensus 231 g~~~~~~~ 238 (254)
T PRK14273 231 SSTDELFF 238 (254)
T ss_pred CCHHHHHh
Confidence 99988753
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.75 Aligned_cols=202 Identities=26% Similarity=0.394 Sum_probs=170.3
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|... + .++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISFRYPDA-A---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEEEeCCC-C---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 58899999999532 1 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCC--CCCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 -SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 -~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.|+|++|+| .+++.||+|||.++.. .++ ++..++++.++|+..+... ...||||||||+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv 149 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRV 149 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHH
Confidence 489999998 4667899999987632 222 3456677777776554433 348999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
+||||++.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+..||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999988876 333122 378999999999998889999999999999999988875
Q ss_pred h
Q 000511 818 V 818 (1455)
Q Consensus 818 ~ 818 (1455)
.
T Consensus 229 ~ 229 (279)
T PRK13635 229 K 229 (279)
T ss_pred c
Confidence 4
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.82 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=166.8
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC-----CcEEEEcC--------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG-------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~-----~G~i~~~~-------- 668 (1455)
++++|++++|.. . .+++|+||++++||+++|+|+||||||||+++|+|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE---K---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC---e---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 678999999853 1 2599999999999999999999999999999999999998 99998754
Q ss_pred -------cEEEEcCCCCCCCcCHHHHhccCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 -------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 -------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.++|++|++++++.|++||+.++.. .+. ++..++++..++..+++ ........+||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 148 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGG 148 (247)
T ss_pred chHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHH
Confidence 3899999999998999999987532 121 23445555556653221 1234566799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecC
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 812 (1455)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL-IQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999888775 433 334589999999999876 499999999999999999
Q ss_pred HHHHHh
Q 000511 813 SADLAV 818 (1455)
Q Consensus 813 ~~~l~~ 818 (1455)
++++..
T Consensus 227 ~~~~~~ 232 (247)
T TIGR00972 227 TEQIFT 232 (247)
T ss_pred HHHHHh
Confidence 888753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=328.96 Aligned_cols=198 Identities=25% Similarity=0.382 Sum_probs=162.7
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|..+ .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 2 LEVENLSKVYPNG-----KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred eEEEeeeeecCCC-----cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 5688999988511 2359999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCC------------CC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~ 729 (1455)
.++|++|++.++. .|++||+.++.. .. .++..++++.+++... ......+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 145 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQ 145 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCccc
Confidence 2899999998876 599999987531 01 1234445555555432 2345678
Q ss_pred cccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeE
Q 000511 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQV 807 (1455)
Q Consensus 730 LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i 807 (1455)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999998888775 333122 3789999999999985 5999999999999
Q ss_pred EEecCHHHH
Q 000511 808 KWIGSSADL 816 (1455)
Q Consensus 808 ~~~g~~~~l 816 (1455)
++.|+++++
T Consensus 225 ~~~~~~~~~ 233 (243)
T TIGR02315 225 VFDGAPSEL 233 (243)
T ss_pred EecCCHHHh
Confidence 999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=317.67 Aligned_cols=194 Identities=22% Similarity=0.312 Sum_probs=162.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .. .|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 3789999999964 369999999999999999999999999999999999999999999999998753 22 788999
Q ss_pred EEeCCCCCC-CCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~lf-~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
+++|++.++ ..|+++|+..... ..++++.++++..++. .........||||||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA---------PLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH---------HHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999988765 5799999864321 2233455555555543 32333345799999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhhhCEEEEEeC
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILILDH 1426 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1426 (1455)
+|||||||++||..+.+.+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999875 358999999999999998 99988854
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=342.57 Aligned_cols=204 Identities=28% Similarity=0.365 Sum_probs=167.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|++++|+.... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~--~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGGR--TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCCC--ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 578999999963211 12469999999999999999999999999999999999999999998865
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.|+|++|++.++. .|++|||.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qR 148 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQR 148 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 4999999999886 699999987532 222 233445555555322 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1455)
|+||||++.+|+++||||||++||+.+.+.+.+. +... ...++|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 3321 1237899999999999875 99999999999999999998
Q ss_pred HHhc
Q 000511 816 LAVS 819 (1455)
Q Consensus 816 l~~~ 819 (1455)
+...
T Consensus 228 ~~~~ 231 (343)
T PRK11153 228 VFSH 231 (343)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=332.47 Aligned_cols=200 Identities=27% Similarity=0.413 Sum_probs=166.6
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|++++|+.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 2 IRLENVSYSYPDG-----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred EEEEEEEEEcCCC-----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 5789999998531 2359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCC--CCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.++|++|+|. +++.|++|||.++.. .+. ++..++++.++++... ......||||||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv 145 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR-----------HRSPKTLSGGQGQCV 145 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCCcccCCHHHHHHH
Confidence 3899999986 567899999987632 222 3345556666664332 344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
+||||++.+|+++||||||++||+.+.+.+.+. +.....+|.|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999998888776 3321234789999999999998899999999999999999888753
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=333.71 Aligned_cols=186 Identities=30% Similarity=0.425 Sum_probs=156.4
Q ss_pred ccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------------cEEEEcCCCCCCC-c
Q 000511 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-G 682 (1455)
Q Consensus 621 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------------~i~y~~Q~p~l~~-~ 682 (1455)
.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|+|.++. .
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 359999999999999999999999999999999999999999998854 4899999999885 5
Q ss_pred CHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcC
Q 000511 683 TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755 (1455)
Q Consensus 683 ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDe 755 (1455)
|++||+.++.. ++ +++..++++.+++...+.. ...+||||||||++||||++.+|+++||||
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----------YPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421 22 2345566777777544433 335899999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHh
Q 000511 756 VLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 756 p~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||++||+.+.+.+.+. +.... ..|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 187 Pt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 187 AFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999988876 33211 23789999999999875 499999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=336.85 Aligned_cols=202 Identities=25% Similarity=0.374 Sum_probs=167.5
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.. ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 46899999999852 2359999999999999999999999999999999999999999999875
Q ss_pred -cEEEEcCCCCCCC-cCHHHHhcc-CCC--CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 -SIAYVPQVPWILS-GTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~-~ti~~nI~~-g~~--~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
.||||||+|.++. .|++||+.| +.. .+. ++..++++.+++.... .....+||||||||++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLT 148 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHH
Confidence 4999999999875 599999985 321 122 2334455555553221 2234589999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||||+.++|++++|||||++||+...+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988876 43322347899999999999875 99999999999999999999865
Q ss_pred c
Q 000511 819 S 819 (1455)
Q Consensus 819 ~ 819 (1455)
.
T Consensus 228 ~ 228 (306)
T PRK13537 228 S 228 (306)
T ss_pred c
Confidence 4
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=363.80 Aligned_cols=199 Identities=26% Similarity=0.339 Sum_probs=167.7
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCC--CceEEECCEeCCCCChHHHhcccEEEeCCCCCCCC-c
Q 000511 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-S 1309 (1455)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~--~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~lf~g-T 1309 (1455)
+.+|+|+|++++|||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 2456789999999999965 9
Q ss_pred HHHhcCcCC------CCChHHHHHHHHHhcHHHHHHhCCC----chhhhc-CCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000511 1310 LRDNLDPFH------MNDDLKIWSVLEKCHVKEEVEAVGL----ETFVKE-SGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1310 IreNLdp~~------~~~d~ei~~aL~~~~l~~~i~~lgL----dt~v~e-~G~~LSgGQrQrl~LARAlLr~~~ILlLD 1378 (1455)
+|||+.+.. ..++++..+. ..+.++.+|| ||.+++ ....||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999996531 1233332211 2344555555 666664 35679999999999999999999999999
Q ss_pred ccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhh-H-hhhCEEEEEeCCeEEEeCChhHHhc
Q 000511 1379 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1379 EaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
|||++||..+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998765 58999999999984 4 5589999999999999999999874
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=319.77 Aligned_cols=192 Identities=24% Similarity=0.330 Sum_probs=161.2
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------cE
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 670 (1455)
++++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~---~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTKTYGK---K---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEEEECC---e---EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 357899998842 2 359999999999999999999999999999999999999999999876 48
Q ss_pred EEEcCCCCCC-CcCHHHHhccCC---CCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHcc
Q 000511 671 AYVPQVPWIL-SGTIRDNILFGK---NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 671 ~y~~Q~p~l~-~~ti~~nI~~g~---~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~ 746 (1455)
+||+|++.++ +.|++||+.++. ..++++.+++++..+++... ......|||||||||+||||++.
T Consensus 75 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 75 GALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred EEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhc
Confidence 9999999877 469999997652 23455667777777775433 23456899999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 747 ~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999888775 33312257899999999999865 9999999999998654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=322.95 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=163.0
Q ss_pred EEEEEEEEEecCC-----CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEEC--C--EeCCCCCh
Q 000511 1219 IEFQNVTMRYKPS-----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD--G--LNIINTPV 1289 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~-----~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~Id--G--~di~~i~~ 1289 (1455)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred HH---H-hcccEEEeCCCCCCCC-cHHHhcCcC---CCCChHHHHHHHHHhcHHHHHHhCCCchh-hhcCCCCCChhHHH
Q 000511 1290 RD---L-RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQ 1360 (1455)
Q Consensus 1290 ~~---l-R~~i~~VpQdp~lf~g-TIreNLdp~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~-v~e~G~~LSgGQrQ 1360 (1455)
.. + +++++|+||+|.+|+. |++||+... .....++.. ....+.++.+|++.. ....+.+||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAAR-----ARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 43 3 4679999999988875 999998642 111111111 112344455566543 34556789999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHh-hhCEEEEE
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1424 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl 1424 (1455)
|++||||++++|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+. .||||+.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999998764 4789999999999886 58999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=323.17 Aligned_cols=198 Identities=26% Similarity=0.440 Sum_probs=163.9
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------c
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 669 (1455)
++++|+++.|+.. . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~-~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (220)
T cd03263 1 LQIRNLTKTYKKG-T---KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76 (220)
T ss_pred CEEEeeEEEeCCC-C---ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhh
Confidence 3578899988532 1 2359999999999999999999999999999999999999999998875 3
Q ss_pred EEEEcCCCCCC-CcCHHHHhccCC---CCC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWIL-SGTIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~-~~ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++|++|+|.++ +.|++||+.+.. ..+ +++..++++.+++.... .....+||||||||++||
T Consensus 77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLA 145 (220)
T ss_pred EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHH
Confidence 89999999888 569999998642 122 23455666666664322 234468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 146 ~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDL-ILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHhcCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999988775 333 3346899999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.62 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=161.6
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
+++|+++.|..+ .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 2 EVENLSKTYPNG-----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred EEeeEEEecCCc-----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 578889888531 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCC-cCHHHHhccCCC------------CC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000511 669 --SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~L 730 (1455)
.++|++|++.++. .|++||+.++.. .+ .++..+.++..++.. .....+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 145 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQL 145 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccC
Confidence 3899999998876 699999986521 11 122334444444432 234566799
Q ss_pred ccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEE
Q 000511 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVK 808 (1455)
Q Consensus 731 SGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~ 808 (1455)
||||||||+||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|+++
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988876 333122 3789999999999988 59999999999999
Q ss_pred EecCHHHH
Q 000511 809 WIGSSADL 816 (1455)
Q Consensus 809 ~~g~~~~l 816 (1455)
+.|+++++
T Consensus 225 ~~~~~~~~ 232 (241)
T cd03256 225 FDGPPAEL 232 (241)
T ss_pred eecCHHHh
Confidence 99998876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=328.99 Aligned_cols=205 Identities=25% Similarity=0.333 Sum_probs=169.8
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC-----
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~----- 668 (1455)
...++++|+++.|.. . ++|+|+||+|++|++++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---F---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC---e---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 456899999999853 2 35999999999999999999999999999999999986 5899998764
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~L 730 (1455)
.++|++|+|.++..|++||+.++.. +++ ++..++++..++..++. ...++...+|
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 157 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSL 157 (260)
T ss_pred cccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCC
Confidence 4899999999988999999987532 232 23445566666543332 2345677899
Q ss_pred ccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEE
Q 000511 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKW 809 (1455)
Q Consensus 731 SGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~ 809 (1455)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++
T Consensus 158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITE-LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888776 333 334689999999999886 499999999999999
Q ss_pred ecCHHHHHh
Q 000511 810 IGSSADLAV 818 (1455)
Q Consensus 810 ~g~~~~l~~ 818 (1455)
.|+.+++..
T Consensus 236 ~g~~~~~~~ 244 (260)
T PRK10744 236 FGNTDTIFT 244 (260)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.53 Aligned_cols=191 Identities=26% Similarity=0.369 Sum_probs=156.1
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
+++|++++|+.... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGE--KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCc--ceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57889998863210 12369999999999999999999999999999999999999999998754
Q ss_pred ---cEEEEcCCCCCCCc-CHHHHhccCCCC---C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|+|.++.. |++||+.++..+ + +++..++++..+++.. ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHH
Confidence 38999999998876 999999875421 1 2344556666655432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeE
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1455)
|+||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMEL-LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999998888776 333122 37899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=317.15 Aligned_cols=192 Identities=20% Similarity=0.273 Sum_probs=159.9
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 46999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EeCCCCCCC-CcHHHhcCcCCC-C--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCE
Q 000511 1299 VPQSPFLFE-GSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 VpQdp~lf~-gTIreNLdp~~~-~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~I 1374 (1455)
+||++.+|+ .|+++|+..... . .++++.++++..++. ........+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~---------~~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT---------GFEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH---------HHhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 699999864321 1 122345555555443 333444557999999999999999999999
Q ss_pred EEEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhhhCEEEE
Q 000511 1375 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1423 (1455)
Q Consensus 1375 LlLDEaTS~lD~~te~~I~~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~v 1423 (1455)
++|||||++||..+.+.+.+.|++. .++.|+|++||+...+. ||+++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999875 35789999999986543 477654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=315.36 Aligned_cols=335 Identities=21% Similarity=0.297 Sum_probs=243.7
Q ss_pred HhhcchHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCCCcch
Q 000511 1079 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA----VIGSRGNLPATFST 1154 (1455)
Q Consensus 1079 Etl~Gl~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~ 1154 (1455)
+...+.+.|--|+.+.......+...+..-.......+...|+.+..+.+.-+ ..++...+ ++..+ .....+
T Consensus 270 rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Yl-g~ilsy~vi~~p~Fs~h---~y~~~s 345 (659)
T KOG0060|consen 270 RLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYL-GGILSYVVIAIPFFSGH---VYDDLS 345 (659)
T ss_pred eeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhheeeEEeeeeeccc---ccCCcC
Confidence 44556777888887776666555555555555555566777887766655421 11111111 11111 122334
Q ss_pred HHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-------------cccc----c---CCCCC
Q 000511 1155 PGLV-GLA---LSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQ-------------EELC----G---YQSLS 1210 (1455)
Q Consensus 1155 ~g~v-gl~---l~~~~~~~~~l~~l~~~~~~~e~~~~s~~Ri~~~~~~~~-------------e~~~----~---~~~~~ 1210 (1455)
+... +.. ..+.+.+.+.+..++....++..-.+-..||-++.+.-. |+.. . ...-+
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 4333 222 122333444555556566666666667788887764210 1100 0 01113
Q ss_pred CCCCCCccEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH
Q 000511 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1455)
Q Consensus 1211 ~~wp~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~ 1290 (1455)
..||.+..|+|++|++.=|.+.+...+|+||+|+.|+.+-|+||||||||||++.|.|+.+..+|++.--...-
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~------ 499 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG------ 499 (659)
T ss_pred ccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC------
Confidence 45788889999999999876666667789999999999999999999999999999999999999997532110
Q ss_pred HHhcccEEEeCCCCCCCCcHHHhcC-cC-------CCCChHHHHHHHHHhcHHHHHHhC-CCchhhh-cCCCCCChhHHH
Q 000511 1291 DLRGRFAVVPQSPFLFEGSLRDNLD-PF-------HMNDDLKIWSVLEKCHVKEEVEAV-GLETFVK-ESGISFSVGQRQ 1360 (1455)
Q Consensus 1291 ~lR~~i~~VpQdp~lf~gTIreNLd-p~-------~~~~d~ei~~aL~~~~l~~~i~~l-gLdt~v~-e~G~~LSgGQrQ 1360 (1455)
-+.+=++||.|++-.||+||-+- |. +..+|++|.+.|+.++|...++.. |+|+++. +=...||+||+|
T Consensus 500 --~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 500 --PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred --CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 04589999999999999999973 41 235799999999999999999888 9997665 334579999999
Q ss_pred HHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhCEEEEEeCC
Q 000511 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1427 (1455)
Q Consensus 1361 rl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G 1427 (1455)
|+|+||.++.+|++-+|||+|||||.+.|..+.+.+|+. +-|.|.|.||-+.-+.-|.++-|+.+
T Consensus 578 RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 999999999999999999999999999999999999986 89999999999988888999999863
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=324.53 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=162.4
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|+.... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSV--QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCc--ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4789999999964211 12369999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCCCCCCc-CHHHHhccCC---CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 -----~i~y~~Q~p~l~~~-ti~~nI~~g~---~~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.++|++|+|.++.. |++||+.++. ..++ ++..++++.+++... ......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGER 151 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHH
Confidence 38999999988865 9999998642 1222 234556666655432 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccccCCEEEEEeCCeEEEecC
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1455)
||++||||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998888775 33211 24789999999999998889999999999988765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=324.64 Aligned_cols=199 Identities=25% Similarity=0.375 Sum_probs=164.3
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------c
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 669 (1455)
++++|++++|+. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 2 LEVAGLSFAYGA---R---RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred EEEEeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 578899998852 2 359999999999999999999999999999999999999999998875 3
Q ss_pred EEEEcCCCCC-CCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWI-LSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l-~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++|++|++.+ ++.|++||+.++.. .+++ +..+.++..++. ...+....+||||||||++||
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHH
Confidence 8999999987 46799999986532 2222 223344444443 224556679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHHh
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999988876 33311 24789999999999988899999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=339.42 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=173.0
Q ss_pred cEEEEEEEEEecCCC-CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhccc
Q 000511 1218 LIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i 1296 (1455)
.++++|++++|+... .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 589999999997542 4699999999999999999999999999999999999999999999999762
Q ss_pred EEEeCCCCCCC-CcHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCC
Q 000511 1297 AVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~VpQdp~lf~-gTIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~ 1372 (1455)
++++.+.+++ .|++||+.... ..++++..+. ..+.++.+|++.........||||||||++|||||+.+|
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~-----i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P 162 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI-----IPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINP 162 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 2333444444 49999986532 1233332221 122333346665566667789999999999999999999
Q ss_pred CEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1373 ~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
++|||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..+.. .|.+++
T Consensus 163 ~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~-~~~~~~ 241 (549)
T PRK13545 163 DILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD-EFLKKY 241 (549)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH-HHHHHH
Confidence 9999999999999999999999998753 47899999999999876 89999999999999999999987543 454444
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=325.51 Aligned_cols=197 Identities=29% Similarity=0.360 Sum_probs=164.6
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------cEE
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 671 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~ 671 (1455)
..++++|++++|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 45899999999853 2359999999999999999999999999999999999999999998865 489
Q ss_pred EEcCCCCCCC-cCHHHHhccCCCC-CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCC
Q 000511 672 YVPQVPWILS-GTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 749 (1455)
Q Consensus 672 y~~Q~p~l~~-~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~ 749 (1455)
|++|+|.++. .|++||+.++... .+++..+.++..++... ......+||||||||++||||+..+|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998886 6999999876321 23455666666666533 234567999999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 750 IYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 750 illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999888775 33211 23789999999999875 59999999999999877643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=322.16 Aligned_cols=199 Identities=27% Similarity=0.416 Sum_probs=161.1
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|.. . ++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGK---S---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCC---e---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 357888988852 2 359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCCCCCc-CHHHHhccCCCCC--H---HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 669 -SIAYVPQVPWILSG-TIRDNILFGKNYD--P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~--~---~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
.++|++|++.++.. |++||+.++.... . ++..++++... .+ ......+..+||||||||++||
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l----~~~~~~~~~~LS~G~~qrv~la 144 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RL----KERRKQLAGTLSGGEQQMLAIA 144 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hh----hhhhhCchhhCCHHHHHHHHHH
Confidence 38999999998876 9999998764321 1 12223333321 11 1123456778999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHH
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 145 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 145 RALMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999999999999999888776 33312257899999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=320.67 Aligned_cols=188 Identities=32% Similarity=0.436 Sum_probs=154.6
Q ss_pred EEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------cEEEEcC
Q 000511 604 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVPQ 675 (1455)
Q Consensus 604 ~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--------~i~y~~Q 675 (1455)
++|+++.|+. . .+++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|++|
T Consensus 2 ~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYGG---H---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred cccceeEECC---E---EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 5677888752 2 359999999999999999999999999999999999999999999987 3999999
Q ss_pred CCCC---CCcCHHHHhccCCCC-----------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 676 VPWI---LSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 676 ~p~l---~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
+|.+ ++.|++||+.++... ++++.+++++.++++..+. ....+||||||||++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 144 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHH
Confidence 9976 557999999875321 1234566677777754333 24458999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++| +++.
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999988776 33312257899999999999865 9999999886 5443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=328.83 Aligned_cols=204 Identities=23% Similarity=0.345 Sum_probs=169.3
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC-----
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG----- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~----- 668 (1455)
+..++++|+++.|.. . .+|+|+||+|++|++++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 17 EIKMRARDVSVFYGE---K---QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred CceEEEEeEEEEECC---E---EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 457899999999852 2 359999999999999999999999999999999999974 899998765
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCC---C--C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKN---Y--D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~---~--~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~ 729 (1455)
.++|++|+|.+++.|++||+.++.. . + .++..++++.+++..++. +..+..+.+
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 163 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTG 163 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCccc
Confidence 3899999999998899999987531 1 1 123455666666643322 123556779
Q ss_pred cccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEE
Q 000511 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 808 (1455)
Q Consensus 730 LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~ 808 (1455)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|+++
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~ 241 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL-IDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLV 241 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998888775 433 3346899999999999864 9999999999999
Q ss_pred EecCHHHHH
Q 000511 809 WIGSSADLA 817 (1455)
Q Consensus 809 ~~g~~~~l~ 817 (1455)
+.|+++++.
T Consensus 242 ~~g~~~~~~ 250 (267)
T PRK14235 242 EVGDTEKMF 250 (267)
T ss_pred EeCCHHHHH
Confidence 999988875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=323.44 Aligned_cols=202 Identities=28% Similarity=0.402 Sum_probs=164.3
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|..... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCC--ceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 578999999863210 01459999999999999999999999999999999999999999998764
Q ss_pred ---cEEEEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|+|.++. .|++||+.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQR 148 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHH
Confidence 3899999999986 599999987521 222 233444555555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1455)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999888776 332122 37899999999999865 99999999999999999887
Q ss_pred HH
Q 000511 816 LA 817 (1455)
Q Consensus 816 l~ 817 (1455)
+.
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 64
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=320.61 Aligned_cols=192 Identities=30% Similarity=0.426 Sum_probs=157.6
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------cE
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 670 (1455)
++++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVTKRFGN---V---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeEEEECC---e---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 357889998853 2 359999999999999999999999999999999999999999999875 38
Q ss_pred EEEcCCCCCCC-cCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHH
Q 000511 671 AYVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1455)
Q Consensus 671 ~y~~Q~p~l~~-~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 742 (1455)
+|++|++.++. .|++||+.++.. .+++ +..+.++..+++.. ......+||||||||++|||
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred EEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHH
Confidence 99999999885 599999987522 2222 33444555555432 23445689999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 743 aly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
|++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999988876 332122 37899999999998765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=328.49 Aligned_cols=207 Identities=26% Similarity=0.331 Sum_probs=172.0
Q ss_pred CCCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC---
Q 000511 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG--- 668 (1455)
Q Consensus 597 ~~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~--- 668 (1455)
.....++++|+++.|+. . ++|+|+||++++||+++|+||||||||||+++|.|.++ |++|+|.++|
T Consensus 16 ~~~~~l~~~nl~~~~~~---~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK---K---EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CCCeEEEEeeEEEEECC---e---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 34557899999999852 2 35999999999999999999999999999999999986 5899998765
Q ss_pred ------------cEEEEcCCCCCCCcCHHHHhccCCC----CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000511 669 ------------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1455)
Q Consensus 669 ------------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~ 728 (1455)
.++|++|+|.++..|++|||.++.. .++ ++..++++.+++..++. +..+..+.
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~ 162 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSAL 162 (267)
T ss_pred ccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcc
Confidence 3899999999998999999987532 122 33455666666654332 23456778
Q ss_pred ccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeE
Q 000511 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQV 807 (1455)
Q Consensus 729 ~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i 807 (1455)
+||||||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.++.|+|++||+++.+. .||++++|++|++
T Consensus 163 ~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFE-LKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999998888775 333 345689999999999876 5999999999999
Q ss_pred EEecCHHHHHh
Q 000511 808 KWIGSSADLAV 818 (1455)
Q Consensus 808 ~~~g~~~~l~~ 818 (1455)
++.|+++++..
T Consensus 241 ~~~g~~~~~~~ 251 (267)
T PRK14237 241 IEYDKTRNIFT 251 (267)
T ss_pred EEeCCHHHHhc
Confidence 99999988753
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=318.01 Aligned_cols=197 Identities=23% Similarity=0.297 Sum_probs=144.4
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccE
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~ 1297 (1455)
.+-+.||+|.|+. ..|.+++++|-|.--.+|+||||+|-|||||+++|.|-++|+.|+..=+ -|-+||
T Consensus 586 vLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 4678999999964 4679999999999999999999999999999999999999999986543 255788
Q ss_pred EEeCCCC--C-CCCcHHHhcCcCCCCChHHHHHHHHHhcHHHHHHhCCCchhhhc-CCCCCChhHHHHHHHHHHHccCCC
Q 000511 1298 VVPQSPF--L-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE-SGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~VpQdp~--l-f~gTIreNLdp~~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e-~G~~LSgGQrQrl~LARAlLr~~~ 1373 (1455)
...|..- | -..|--|.|.-.-...-++-+.+|-..| |.+.... .-..||||||-|+++|-.-++.|+
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG---------L~sHAHTikikdLSGGQKaRValaeLal~~PD 724 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG---------LASHAHTIKIKDLSGGQKARVALAELALGGPD 724 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh---------hhhccceEeeeecCCcchHHHHHHHHhcCCCC
Confidence 8888652 1 1223333332111112233334444433 3332110 123699999999999999999999
Q ss_pred EEEEeccCcCCCHHHHHHHHHHHHHhcCCcEEEEeccChhhHhhhC-EEEEEeCCeEEEe-CChhH
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHLVEQ-GNPQT 1437 (1455)
Q Consensus 1374 ILlLDEaTS~lD~~te~~I~~~i~~~~~~~TvI~IaHrl~ti~~~D-rI~vl~~G~ive~-G~p~e 1437 (1455)
||||||||.+||.++-..+-++|+++ +..||+|+|+-..|...| ..+|+++-.|-|. |.+++
T Consensus 725 vlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 725 VLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999886 457999999988887543 3566666555442 44443
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=334.65 Aligned_cols=202 Identities=26% Similarity=0.393 Sum_probs=166.2
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~~i~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---K---VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC---e---EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 45889999999853 2 359999999999999999999999999999999999999999999865
Q ss_pred -cEEEEcCCCCCCC-cCHHHHhcc-CC--CCCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHH
Q 000511 669 -SIAYVPQVPWILS-GTIRDNILF-GK--NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~-~ti~~nI~~-g~--~~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRva 739 (1455)
.+||++|++.++. .|++||+.+ +. ..+.+ +..++++.+++... ......+||||||||++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 145 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLT 145 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHH
Confidence 4899999998875 599999974 22 12322 23344555544322 23345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHHh
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 lARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1455)
||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999988776 33312357899999999999865 99999999999999999999864
Q ss_pred c
Q 000511 819 S 819 (1455)
Q Consensus 819 ~ 819 (1455)
.
T Consensus 225 ~ 225 (303)
T TIGR01288 225 E 225 (303)
T ss_pred h
Confidence 3
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=319.76 Aligned_cols=190 Identities=24% Similarity=0.349 Sum_probs=157.8
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------c
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 669 (1455)
++++|+++.|.. . ++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK---K---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC---E---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 367899998853 2 3599999999999 9999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCc-CHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++|++|+|.++.. |++||+.+... .+ +++.+++++.+++....+ ....+||||||||++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 142 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIA 142 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHH
Confidence 8999999998875 99999986321 12 234455666666654322 34468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEec
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 811 (1455)
||++++|+++||||||++||+.+.+++.+. +.. ..+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNL-LSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999988876 333 334689999999999986 49999999999998654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=329.86 Aligned_cols=206 Identities=24% Similarity=0.376 Sum_probs=170.6
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+...+...+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 47899999999643210113469999999999999999999999999999999999999999998875
Q ss_pred --cEEEEcCCCC--CCCcCHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVPW--ILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|+|. +++.|+.||+.|+.. .+ +++.+++++.++|..... .....||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999985 666799999998632 22 234566777777765443 3346899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l 816 (1455)
++||||++.+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988775 433112 37899999999999888999999999999999999988
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
..
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 54
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=308.95 Aligned_cols=166 Identities=33% Similarity=0.550 Sum_probs=148.6
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------c
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 669 (1455)
++++|++++|.... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQE----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCC----ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 36789999986421 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCC
Q 000511 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 749 (1455)
Q Consensus 670 i~y~~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~ 749 (1455)
++|++|+|++++.|++||| ..+||||||||++||||++.+|+
T Consensus 77 i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 77 ISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998 45899999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCCeEEEec
Q 000511 750 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 750 illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 811 (1455)
++||||||++||+.+.+.+++. +.. +.+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSL-IFE-VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999888876 433 34578999999999999889999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=342.13 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=167.8
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|.. ..+|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 4789999999853 2359999999999999999999999999999999999999999999876
Q ss_pred -cEEEEcCCCCC-CCcCHHHHhccCCC-----C------CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHH
Q 000511 669 -SIAYVPQVPWI-LSGTIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 -~i~y~~Q~p~l-~~~ti~~nI~~g~~-----~------~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQk 735 (1455)
.+|||+|++.+ ++.|++||+.++.. + +.++.+++++..++.... .....+||||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGer 145 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGER 145 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 48999999987 56799999988641 1 123455666666664322 234568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 736 qRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
||++|||||+++|+++||||||++||+.....+++. +.....+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL-VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999988888765 3331224789999999999985 59999999999999999999
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 225 ev~~ 228 (402)
T PRK09536 225 DVLT 228 (402)
T ss_pred HHhC
Confidence 8754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=323.48 Aligned_cols=197 Identities=26% Similarity=0.370 Sum_probs=161.7
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
+++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 2 RAENLSKRYGK---R---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred eEEEEEEEeCC---E---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 57889998852 2 359999999999999999999999999999999999999999998864
Q ss_pred cEEEEcCCCCCCCc-CHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHH
Q 000511 669 SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRval 740 (1455)
.++|++|++.++.. |++||+.++.+ .++ ++.++.++..++.. .......+||||||||++|
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHH
Confidence 38999999988876 99999987532 121 12334444444432 2345667999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHH
Q 000511 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 741 ARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
|||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999998888775 33212347899999999987665 9999999999999999887764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=330.45 Aligned_cols=203 Identities=28% Similarity=0.384 Sum_probs=169.2
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCC---cEEEEcC--------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASG-------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~---G~i~~~~-------- 668 (1455)
..++++|+++.|+.. . .++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~-~---~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-K---KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCC-C---ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 468899999999632 1 235999999999999999999999999999999999999988 8998865
Q ss_pred -----cEEEEcCCCC--CCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 -----SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 -----~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.++||+|+|+ +++.|++|||.|+.. .++ ++..++++.++++... .....+|||||
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~ 148 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQ 148 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHH
Confidence 4899999995 567899999987632 233 2355666777775433 33446999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEecCH
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~ 813 (1455)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+..||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 333122 37899999999999888999999999999999999
Q ss_pred HHHHh
Q 000511 814 ADLAV 818 (1455)
Q Consensus 814 ~~l~~ 818 (1455)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=331.78 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=167.3
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|..... ...++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4688999999963211 012469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.++|++|+| .+++.|++|||.++.. .+. ++..++++.++++.+. ......+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHH
Confidence 389999998 5777899999987531 222 2345556666664222 234566899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCH
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 813 (1455)
|||++||||+..+|+++||||||++||+...+.+.+. +.....++.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998887765 4331234789999999999876 5999999999999999999
Q ss_pred HHHHh
Q 000511 814 ADLAV 818 (1455)
Q Consensus 814 ~~l~~ 818 (1455)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 88753
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=361.14 Aligned_cols=215 Identities=28% Similarity=0.448 Sum_probs=175.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCC--CCCCceEEEC----------------
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVD---------------- 1280 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~--~~~~G~I~Id---------------- 1280 (1455)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999953 46999999999999999999999999999999999996 7999999997
Q ss_pred -------CEeCC-------CCC---hHHHhcccEEEeCC-CCCCCC-cHHHhcCcCC---CCChHHHHHHHHHhcHHHHH
Q 000511 1281 -------GLNII-------NTP---VRDLRGRFAVVPQS-PFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEV 1338 (1455)
Q Consensus 1281 -------G~di~-------~i~---~~~lR~~i~~VpQd-p~lf~g-TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i 1338 (1455)
|.++. ..+ ...+|++++++||+ +.+|+. |+++|+.+.. ..+..+.. ....+.+
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l 153 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDLI 153 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHH
Confidence 33331 111 23467889999998 567764 9999996421 11222211 1223445
Q ss_pred HhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHh
Q 000511 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1416 (1455)
Q Consensus 1339 ~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~ 1416 (1455)
+.+|++........+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.
T Consensus 154 ~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 233 (520)
T TIGR03269 154 EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIE 233 (520)
T ss_pred HHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 55577665666667899999999999999999999999999999999999999999998864 3789999999999987
Q ss_pred h-hCEEEEEeCCeEEEeCChhHHhc
Q 000511 1417 N-MDEILILDHGHLVEQGNPQTLLQ 1440 (1455)
Q Consensus 1417 ~-~DrI~vl~~G~ive~G~p~eLl~ 1440 (1455)
. ||+|++|++|++++.|+++++.+
T Consensus 234 ~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 234 DLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred HhcCEEEEEeCCEEeeecCHHHHHH
Confidence 5 89999999999999999998865
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=326.51 Aligned_cols=203 Identities=26% Similarity=0.321 Sum_probs=167.5
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcC---ccC--CCcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE---MML--THGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~---~~~--~~G~i~~~~------- 668 (1455)
.++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|. .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 5789999999853 2359999999999999999999999999999999996 454 589998764
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCC----CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|+|.+++.|++||+.++.. .+ +++..++++.+++..++. +..+..+.+|||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 149 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSG 149 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCH
Confidence 3899999999998999999987531 11 123455666666643332 224566789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 811 (1455)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999988776 433 345789999999999885 49999999999999999
Q ss_pred CHHHHHh
Q 000511 812 SSADLAV 818 (1455)
Q Consensus 812 ~~~~l~~ 818 (1455)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14245 228 DTKKIFT 234 (250)
T ss_pred CHHHHhc
Confidence 9998853
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=319.40 Aligned_cols=197 Identities=25% Similarity=0.290 Sum_probs=157.5
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
+.++|++.+|+. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +....
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~- 94 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGG- 94 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----ccccc-
Confidence 678888888864 4699999999999999999999999999999999999999999999999986421 11111
Q ss_pred EeCCCCCCCCcHHHhcCcCCC---CChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~lf~gTIreNLdp~~~---~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+..+.|++||+..... .+.++..+ ...+.++.+|++.........||||||||++||||++++|+++
T Consensus 95 -----~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 164 (224)
T cd03220 95 -----FNPELTGRENIYLNGRLLGLSRKEIDE-----KIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDIL 164 (224)
T ss_pred -----CCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2235699999864321 12222111 1222333346655555555689999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeC
Q 000511 1376 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQG 1433 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1433 (1455)
||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 165 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 165 LIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999998764 46899999999999875 8999999999998865
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=320.56 Aligned_cols=193 Identities=25% Similarity=0.385 Sum_probs=159.3
Q ss_pred EEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEEEeCCCCC---CCCcHHHhcCcC
Q 000511 1241 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL---FEGSLRDNLDPF 1317 (1455)
Q Consensus 1241 l~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~VpQdp~l---f~gTIreNLdp~ 1317 (1455)
|+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..|++++|+||+|.+ |+.|+++|+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 457999998543
Q ss_pred CC--------CC---hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCCH
Q 000511 1318 HM--------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386 (1455)
Q Consensus 1318 ~~--------~~---d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD~ 1386 (1455)
.. .. ++++.++++.+ |++.........||+|||||++||||++++|+++||||||++||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRV---------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHh---------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11 11 12233334443 555444555567999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCChhHHhccCCcHHHHHH
Q 000511 1387 QTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1387 ~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~p~eLl~~~~s~f~~l~ 1450 (1455)
.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++.++. ...+++
T Consensus 147 ~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~--~~~~~~ 209 (223)
T TIGR03771 147 PTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA--PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH--HHHHHh
Confidence 99999999998764 47899999999998865 8999999 79999999999997642 344443
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=330.29 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=168.3
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|+++.|+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSDG-----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 58899999999521 2359999999999999999999999999999999999999999998875
Q ss_pred ---cEEEEcCCC--CCCCcCHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHH
Q 000511 669 ---SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1455)
Q Consensus 669 ---~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 736 (1455)
.++|++|+| .+++.|++|||.++.. +. .++..++++.++|... ......+|||||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~q 148 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKK 148 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHH
Confidence 389999998 5778899999987531 22 2345556666666432 24567799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHH
Q 000511 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 737 RvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1455)
|++|||||+.+|+++||||||++||+...+.+.+. +..... .|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999887775 332122 2789999999999987 59999999999999999998
Q ss_pred HHHh
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 228 ~~~~ 231 (283)
T PRK13636 228 EVFA 231 (283)
T ss_pred HHhc
Confidence 8754
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=320.19 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=160.1
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------c
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------~ 669 (1455)
++++|+++.|+... ...++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57899999986421 112469999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCCc-CHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++|++|+|.++.. |++||+.+... .+ .++..+.++..++... ......+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHH
Confidence 8999999998875 99999975321 22 2234455666555432 3346678999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+.+.+.. ||++++|++|++.+.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999998888776 33312347899999999998764 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=326.39 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=166.7
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc--C---CCcEEEEcC------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM--L---THGSIHASG------ 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~--~---~~G~i~~~~------ 668 (1455)
..++++|+++.|.. . ++|+|+||+|++||+++|+|+||||||||+++|+|.++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWYGQ---H---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEECC---e---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 35899999999852 2 35999999999999999999999999999999999987 3 589998754
Q ss_pred ---------cEEEEcCCCCCCCcCHHHHhccCCCC----CHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 669 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 669 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
.++|++|+|.+++.|++||+.++... +++ +..++++..++.+++. +..+..+.+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS 157 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLS 157 (259)
T ss_pred ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCC
Confidence 38999999999989999999876321 222 2333455555543221 22356677999
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEe
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 810 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 810 (1455)
||||||++||||++.+|+++||||||++||+++.+.+.+. +.. +.+++|+|++||+++.+. .||++++|++|++++.
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998887765 433 344689999999999876 4999999999999999
Q ss_pred cCHHHHHh
Q 000511 811 GSSADLAV 818 (1455)
Q Consensus 811 g~~~~l~~ 818 (1455)
|+++++..
T Consensus 236 g~~~~~~~ 243 (259)
T PRK14274 236 NDTNKMFS 243 (259)
T ss_pred CCHHHHhh
Confidence 99988753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=324.67 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=162.9
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------c
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------~ 669 (1455)
+++|++++|+.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 2 EFENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEEEEeCCc-----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 578899988631 2359999999999999999999999999999999999999999998865 4
Q ss_pred EEEEcCCCCCCC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 i~y~~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
++|++|+|.++. .|++||+.++.. .+. ++..++++..++.. .......+.+||||||||++||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHH
Confidence 899999999886 599999987532 222 23344455544432 0123456679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHH
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
||++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998888776 332122 3789999999999865 59999999999999999888774
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=327.48 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=167.4
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|+.. . +++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~~-~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS-E---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC-C---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 468999999999632 1 2359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCC--CCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++||+|+|. +++.|++|||.++.. ++++ +..++++..++...+ .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQR 150 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHH
Confidence 3899999984 557799999987532 3333 234555666665433 34456999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEccCccccccCCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l 816 (1455)
++||||++.+|+++||||||++||+.+.+.+++. +.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKI-MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999888876 3331223 4899999999998888999999999999999998876
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
..
T Consensus 230 ~~ 231 (271)
T PRK13632 230 LN 231 (271)
T ss_pred hc
Confidence 43
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=326.74 Aligned_cols=205 Identities=25% Similarity=0.346 Sum_probs=167.7
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC-----
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~----- 668 (1455)
+..++++|+++.|.. . .+|+|+||+|++|++++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT---F---EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC---E---EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 456899999999853 2 35999999999999999999999999999999999987 5899998764
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCCC---C---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|+|.++..|++||+.++... + +++..++++.+++...+. +.......+|||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 157 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSG 157 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCH
Confidence 38999999999888999999976432 2 223344555555432221 234556779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeC-------
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK------- 804 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~------- 804 (1455)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+. .||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET-MHE-LKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999988775 333 345689999999999876 4999999996
Q ss_pred ----CeEEEecCHHHHHh
Q 000511 805 ----GQVKWIGSSADLAV 818 (1455)
Q Consensus 805 ----G~i~~~g~~~~l~~ 818 (1455)
|++++.|+.+++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=285.09 Aligned_cols=209 Identities=27% Similarity=0.362 Sum_probs=175.4
Q ss_pred cEEEEEEEEEecCC--CCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH---HH
Q 000511 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1292 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~---~l 1292 (1455)
.|+.++++..-+.. .-.+|++|+|.|++||.+||||+||||||||+..|.|+-+|++|+|.+.|.++.+++-+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888887776543 33689999999999999999999999999999999999999999999999999998855 45
Q ss_pred h-cccEEEeCCCCCCCC-cHHHhcC-cC---CCCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000511 1293 R-GRFAVVPQSPFLFEG-SLRDNLD-PF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1455)
Q Consensus 1293 R-~~i~~VpQdp~lf~g-TIreNLd-p~---~~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1455)
| +++++|.|.-.|.+. |--||+. |. ++...+. +....+.++..||...+..-...|||||+||++|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~------~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS------RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccH------HHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 5 579999999888764 8999974 32 2211111 111233445557878888778899999999999999
Q ss_pred HHccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc--CCcEEEEeccChhhHhhhCEEEEEeCCeEEEe
Q 000511 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432 (1455)
Q Consensus 1367 AlLr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1432 (1455)
|+.-+|+||+-||||-|||.+|-+.|-+.+.+.. .+.|.++|||+......|||++-|.+|+++|.
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999886553 48899999999999999999999999999863
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=313.26 Aligned_cols=177 Identities=27% Similarity=0.383 Sum_probs=145.8
Q ss_pred CcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCC--CChHHHhcccEEEeCCC--CCCCC
Q 000511 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRFAVVPQSP--FLFEG 1308 (1455)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~--i~~~~lR~~i~~VpQdp--~lf~g 1308 (1455)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++++++||+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23456788999999998 57888
Q ss_pred cHHHhcCcCC---CCChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEEEEeccCcCCC
Q 000511 1309 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385 (1455)
Q Consensus 1309 TIreNLdp~~---~~~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~ILlLDEaTS~lD 1385 (1455)
|++||+.+.. ..++++..+ ...+.++.+|++.........||+|||||++|||||+++|+++||||||++||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVER-----RVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999996421 122222211 12233344455555555667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccChhh
Q 000511 1386 AQTASILQNAISSEC-KGMTVITIAHRIST 1414 (1455)
Q Consensus 1386 ~~te~~I~~~i~~~~-~~~TvI~IaHrl~t 1414 (1455)
+++.+.+.+.|++.. +++|||+|||+++.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 160 PAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999998764 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=326.81 Aligned_cols=201 Identities=24% Similarity=0.344 Sum_probs=165.0
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.. . ++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN---R---CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 46899999999852 2 359999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCCCCCCc-CHHHHhccCC----CCCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 -----SIAYVPQVPWILSG-TIRDNILFGK----NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 -----~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.++|++|++.+++. |++||+.++. ..+.+ +..+.++..++... ......+|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 148 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGM 148 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 38999999999876 9999998642 12222 23344555554322 233456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecC
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1455)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999998887775 332112 37899999999998875 99999999999999999
Q ss_pred HHHHHh
Q 000511 813 SADLAV 818 (1455)
Q Consensus 813 ~~~l~~ 818 (1455)
++++..
T Consensus 228 ~~~~~~ 233 (269)
T PRK11831 228 AQALQA 233 (269)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=327.60 Aligned_cols=205 Identities=25% Similarity=0.308 Sum_probs=166.4
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC-----
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~----- 668 (1455)
+..++++|++++|+. . .+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE---K---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC---c---eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 346899999999853 2 35999999999999999999999999999999999864 6899998754
Q ss_pred ----------cEEEEcCCCCCCCcCHHHHhccCCCCC--------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000511 669 ----------SIAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1455)
Q Consensus 669 ----------~i~y~~Q~p~l~~~ti~~nI~~g~~~~--------~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~L 730 (1455)
.++|++|+|.++++|++||+.++..+. +++..++++.+++..++. ...+....+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 165 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSL 165 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccC
Confidence 489999999999999999998753211 122333444444432221 2345677899
Q ss_pred ccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEE
Q 000511 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKW 809 (1455)
Q Consensus 731 SGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~ 809 (1455)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL-ITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999888765 333 344689999999999876 599999999999999
Q ss_pred ecCHHHHHh
Q 000511 810 IGSSADLAV 818 (1455)
Q Consensus 810 ~g~~~~l~~ 818 (1455)
.|+++++..
T Consensus 244 ~~~~~~~~~ 252 (268)
T PRK14248 244 YDQTEQIFT 252 (268)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=316.87 Aligned_cols=190 Identities=27% Similarity=0.379 Sum_probs=157.7
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------cE
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-----------~i 670 (1455)
++++|+++.|.. . ..|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~---~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYGE---Q-----PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeCC---E-----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 357889998852 1 1399999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCCc-CHHHHhccCCC--C-----CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHH
Q 000511 671 AYVPQVPWILSG-TIRDNILFGKN--Y-----DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1455)
Q Consensus 671 ~y~~Q~p~l~~~-ti~~nI~~g~~--~-----~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalAR 742 (1455)
+|++|+|.++.+ |++||+.++.. . ++++..++++.++++..... ...+||||||||++|||
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALAR 141 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 999999998875 99999987532 1 23355667777777644433 33589999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 743 aly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
|++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999988776 33311 237899999999999865 9999999999998653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=336.27 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=167.6
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
...++++|+++.|.. ..+|+|+||+|++|++++++||||||||||+++|+|.++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 356899999999853 2359999999999999999999999999999999999999999999876
Q ss_pred --cEEEEcCCCCCC-CcCHHHHhcc-CCC--CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 --SIAYVPQVPWIL-SGTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 --~i~y~~Q~p~l~-~~ti~~nI~~-g~~--~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.+|||+|++.++ +.|++||+.+ +.. .+. ++.+++++.++|... ...+..+||||||||+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRL 181 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHH
Confidence 499999999986 4599999975 321 122 223344444444321 2334458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
+||||+.++|+++||||||++||+.+.+.+.+. +......|+|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999988876 33312357899999999999875 9999999999999999999986
Q ss_pred hc
Q 000511 818 VS 819 (1455)
Q Consensus 818 ~~ 819 (1455)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=324.05 Aligned_cols=203 Identities=23% Similarity=0.348 Sum_probs=166.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCC-----CcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~-----~G~i~~~~------- 668 (1455)
.++++|+++.|.. . .+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK---H---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC---e---eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 5789999999853 2 3599999999999999999999999999999999999987 69987653
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCCC----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|+|.+++.|++||+.++..+ .+ ++..++++..++...+. +..+..+.+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 150 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSG 150 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCH
Confidence 39999999999989999999876321 11 22233334444432221 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
||||||+||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999887765 433 3457899999999999876 8999999999999999
Q ss_pred CHHHHHh
Q 000511 812 SSADLAV 818 (1455)
Q Consensus 812 ~~~~l~~ 818 (1455)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14249 229 RTGEIFS 235 (251)
T ss_pred CHHHHHh
Confidence 9888743
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=325.77 Aligned_cols=202 Identities=26% Similarity=0.342 Sum_probs=166.4
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------- 668 (1455)
.++++|+++.|.. . ++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN---Y---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999999853 2 35999999999999999999999999999999999986 4799998765
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCC---C-CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++..+.. ...+....+|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 150 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSG 150 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCH
Confidence 3899999999999999999987532 1 12 23445555555532111 123456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
|||||++||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LME-LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHH-HHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999998888776 433 3446899999999999765 9999999999999999
Q ss_pred CHHHHH
Q 000511 812 SSADLA 817 (1455)
Q Consensus 812 ~~~~l~ 817 (1455)
+.+++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14251 229 PTEEMF 234 (251)
T ss_pred CHHHHH
Confidence 988874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=325.83 Aligned_cols=203 Identities=25% Similarity=0.350 Sum_probs=166.7
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------ 668 (1455)
..++++|+++.|.. . ++|+|+||+|++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYGE---K---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeCC---e---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 46899999998852 2 359999999999999999999999999999999999875 799998754
Q ss_pred ---------cEEEEcCCCCCCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 ---------SIAYVPQVPWILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|++.+++.|++||+.++.. .+.+ +..++++.+++..++. ........+|||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 157 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSG 157 (258)
T ss_pred cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCH
Confidence 3899999999988999999987531 2222 2344555555532211 223456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL-IMN-LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988775 333 3357899999999998865 9999999999999999
Q ss_pred CHHHHH
Q 000511 812 SSADLA 817 (1455)
Q Consensus 812 ~~~~l~ 817 (1455)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=319.26 Aligned_cols=193 Identities=26% Similarity=0.379 Sum_probs=157.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|++++|+... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 57889999986321 112369999999999999999999999999999999999999999998764
Q ss_pred ----cEEEEcCCCCCCC-cCHHHHhccCC---CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHH
Q 000511 669 ----SIAYVPQVPWILS-GTIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1455)
Q Consensus 669 ----~i~y~~Q~p~l~~-~ti~~nI~~g~---~~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkq 736 (1455)
.++|++|+|.++. .|++||+.++. .++. ++..+.++.++++.. ......+|||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~q 148 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQ 148 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 3899999998885 59999998742 1222 234455555555432 23445689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccccCCEEEEEeCCeEE
Q 000511 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1455)
Q Consensus 737 RvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1455)
||+||||++.+|+++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+..+|+|++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988776 33211 2378999999999998889999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=312.28 Aligned_cols=188 Identities=20% Similarity=0.291 Sum_probs=157.3
Q ss_pred EEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChHHHhcccEE
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~~lR~~i~~ 1298 (1455)
++++|++++|++ +.++ ++||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ++.+++
T Consensus 2 l~~~~l~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTY 74 (195)
T ss_pred eEEEEeeEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEe
Confidence 789999999953 3445 599999999999999999999999999999999999999999999986543 456999
Q ss_pred EeCCCCC-CCCcHHHhcCcCCCC--ChHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHHccCCCEE
Q 000511 1299 VPQSPFL-FEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1455)
Q Consensus 1299 VpQdp~l-f~gTIreNLdp~~~~--~d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAlLr~~~IL 1375 (1455)
+||++.+ |..|+++|+.+.... .++++.++++.+ |++......+.+||+|||||++||||++++|+++
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYF---------KLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHc---------CCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999754 678999999653211 233444445544 4444455566789999999999999999999999
Q ss_pred EEeccCcCCCHHHHHHHHHHHHHh-cCCcEEEEeccChhhHhhhCEEE
Q 000511 1376 CLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEIL 1422 (1455)
Q Consensus 1376 lLDEaTS~lD~~te~~I~~~i~~~-~~~~TvI~IaHrl~ti~~~DrI~ 1422 (1455)
+|||||++||+.+.+.+.+.|++. .+++|+|+|||+++.+..+|-|.
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999753 35899999999999999999763
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=324.36 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=168.7
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 668 (1455)
-++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYGE---K---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEECC---e---eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 4788999999852 2 259999999999999999999999999999999999875 799998864
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCCC----CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|++.+++.|++||+.|+... ++ ++..++++.+++..++.. ..+.....|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCH
Confidence 38999999999999999999875321 22 234566677766443321 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~-~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVE-LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999988775 433 3346899999999998765 9999999999999999
Q ss_pred CHHHHHh
Q 000511 812 SSADLAV 818 (1455)
Q Consensus 812 ~~~~l~~ 818 (1455)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14270 229 KTEKIFL 235 (251)
T ss_pred CHHHHhc
Confidence 9888743
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=318.92 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=162.1
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 46899999999852 2359999999999999999999999999999999999999999998876
Q ss_pred --cEEEEcCCCCCCCcCHHHHhccCCC-----CCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHH
Q 000511 669 --SIAYVPQVPWILSGTIRDNILFGKN-----YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~~ti~~nI~~g~~-----~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalA 741 (1455)
.++|++|+|.+++.|++||+.++.. .++++..+.++.+++.. +.......+|||||||||+||
T Consensus 80 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred HhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHH
Confidence 4899999999998999999986421 12233445555555532 223556779999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCccccccCCEEEEEe-CCeEEEecCHH
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMD-KGQVKWIGSSA 814 (1455)
Q Consensus 742 Raly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~-~G~i~~~g~~~ 814 (1455)
||++++|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+.+.++.||++++|+ ++..+++|+|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 150 RNLQFMPKVLLLDEITSALDESNKHNVNEI-IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999998877765 33211 23789999999999998899999995 56666777764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=324.65 Aligned_cols=203 Identities=28% Similarity=0.356 Sum_probs=165.7
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCc--cC---CCcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--ML---THGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~--~~---~~G~i~~~~------- 668 (1455)
.++++|++++|.. . ++|+|+||++++||+++|+||||||||||+++|+|.. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~---~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK---K---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC---e---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 4789999999853 2 3599999999999999999999999999999999985 36 589998764
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCC---C-CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSG 151 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCH
Confidence 3899999999999999999986521 1 12 22333455555533222 234566779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 811 (1455)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET-LLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH-HHH-HhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988875 433 334689999999999875 59999999999999999
Q ss_pred CHHHHHh
Q 000511 812 SSADLAV 818 (1455)
Q Consensus 812 ~~~~l~~ 818 (1455)
+.+++..
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14239 230 DTKQMFM 236 (252)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=322.25 Aligned_cols=199 Identities=26% Similarity=0.355 Sum_probs=163.8
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSKHFGP---T---QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEEEECC---e---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 578899998852 2 359999999999999999999999999999999999999999998865
Q ss_pred --cEEEEcCCCCCCC-cCHHHHhccCC----CCCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVPWILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|++.++. .|++||+.++. ..+. ++..++++..+++.. .......||||||||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qr 144 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAER-----------AHHYPSELSGGQQQR 144 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHH-----------HhcChhhcCHHHHHH
Confidence 3899999998875 59999998753 1222 233444554444322 234557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999888775 33312347899999999999865 999999999999999998876
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=330.83 Aligned_cols=207 Identities=29% Similarity=0.405 Sum_probs=164.4
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35889999999964210 112369999999999999999999999999999999999999999998754
Q ss_pred -------cEEEEcCCCC--CCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 -------SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 -------~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.|+|++|+|+ +++.|++|||.|+.. .+.+ +..+.++..++..+ ..+....+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3899999984 667899999987632 2221 12233333333211 12456679999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEe
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 810 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 810 (1455)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999888765 332112 3789999999999875 5999999999999999
Q ss_pred cCHHHHHh
Q 000511 811 GSSADLAV 818 (1455)
Q Consensus 811 g~~~~l~~ 818 (1455)
|+++++..
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99888753
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=334.82 Aligned_cols=210 Identities=28% Similarity=0.388 Sum_probs=175.9
Q ss_pred cEEEEEEEEEecCCCCcceeeeeEEEeCCcEEEEECCCCChHHHHHHHHhcCCCCCCceEEECCEeCCCCChH-HHhccc
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR-DLRGRF 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrtGSGKSTLl~~L~rl~~~~~G~I~IdG~di~~i~~~-~lR~~i 1296 (1455)
.++++|++.+|++- ++|+||||++.|||..|++|.||||||||++.|.|.|+|++|+|.+||....-.++. ..+.-|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 58999999999754 699999999999999999999999999999999999999999999999999865555 455679
Q ss_pred EEEeCCCCCCCC-cHHHhcCcCCCCC-------hHHHHHHHHHhcHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHH
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHMND-------DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1455)
Q Consensus 1297 ~~VpQdp~lf~g-TIreNLdp~~~~~-------d~ei~~aL~~~~l~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAl 1368 (1455)
++|.||+.|++. ||.|||-.+++.. ..++.+.. .+.++.+|++......-.+||.||||.+.||||+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl 160 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARLGLDIDPDTLVGDLSIAQRQMVEIARAL 160 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHH
Confidence 999999999976 9999996554432 22322221 2334445442223333347999999999999999
Q ss_pred ccCCCEEEEeccCcCCCHHHHHHHHHHHHHhc-CCcEEEEeccChhhHhh-hCEEEEEeCCeEEEeCC
Q 000511 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGN 1434 (1455)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~te~~I~~~i~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1434 (1455)
..+++|||||||||+|+..-.+.+.+.|++.. +|.++|+||||++.+.. ||||.||.||+++..++
T Consensus 161 ~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 161 SFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999998888889998875 69999999999999976 99999999999988766
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=317.11 Aligned_cols=191 Identities=23% Similarity=0.390 Sum_probs=157.4
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC---------cEEEE
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------SIAYV 673 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------~i~y~ 673 (1455)
+++|+++.|.. . .+++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~---~---~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 2 EVENVTKRFGR---V---TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred EEEEEEEEECC---E---EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 57888888852 2 359999999999999999999999999999999999999999999876 49999
Q ss_pred cCCCCCCCc-CHHHHhccCCC---CC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHc
Q 000511 674 PQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1455)
Q Consensus 674 ~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 745 (1455)
+|++.++.+ |++||+.+... .+ +++..+.++..+++.. ......+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHHHh
Confidence 999988875 99999976421 11 2234455555555432 23456789999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 746 ~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
.+|+++||||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988876 33312347899999999998865 9999999999998653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=329.92 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=166.0
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+.... ...++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3688999999864211 012469999999999999999999999999999999999999999998865
Q ss_pred -----cEEEEcCCC--CCCCcCHHHHhccCCC---CCHHH----HHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQS----YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 -----~i~y~~Q~p--~l~~~ti~~nI~~g~~---~~~~~----~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.|+|++|+| .+++.|++|||.++.. .+.+. .+++++..++..+ .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~ 150 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQ 150 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 389999998 5788899999987532 22222 2344444444321 1244567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEecCH
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 813 (1455)
|||++||||++.+|+++||||||++||+.+.+.+.+. +......++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998888776 33212247899999999998864 999999999999999998
Q ss_pred HHHHh
Q 000511 814 ADLAV 818 (1455)
Q Consensus 814 ~~l~~ 818 (1455)
+++..
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.01 Aligned_cols=201 Identities=26% Similarity=0.348 Sum_probs=166.3
Q ss_pred CceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC----------
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------- 668 (1455)
+..++++|+++.|+. . .+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~i~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~ 82 (265)
T PRK10575 9 DTTFALRNVSFRVPG---R---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 (265)
T ss_pred CceEEEeeEEEEECC---E---EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHH
Confidence 346899999999852 2 359999999999999999999999999999999999999999999876
Q ss_pred ---cEEEEcCCCCCCCc-CHHHHhccCCC--------C---CHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 ---SIAYVPQVPWILSG-TIRDNILFGKN--------Y---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 ---~i~y~~Q~p~l~~~-ti~~nI~~g~~--------~---~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.++|++|++-++.+ |++||+.++.. . ++++..+.++.++++..+. ....+||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG 151 (265)
T PRK10575 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSGG 151 (265)
T ss_pred HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCHH
Confidence 38999999876654 99999987521 1 1234556667776654333 234589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEec
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 811 (1455)
||||++||||+..+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999999999999999999998887775 332112 3789999999999986 59999999999999999
Q ss_pred CHHHHH
Q 000511 812 SSADLA 817 (1455)
Q Consensus 812 ~~~~l~ 817 (1455)
+.+++.
T Consensus 231 ~~~~~~ 236 (265)
T PRK10575 231 TPAELM 236 (265)
T ss_pred CHHHhc
Confidence 988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=322.66 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=166.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC-------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~------- 668 (1455)
.++++|+++.|.. . ++++|+||++++||+++|+||||||||||+++|+|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD---F---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC---c---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999999853 2 359999999999999999999999999999999998763 689998764
Q ss_pred --------cEEEEcCCCCCCCcCHHHHhccCCCC----C----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCcccc
Q 000511 669 --------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1455)
Q Consensus 669 --------~i~y~~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSG 732 (1455)
.++|++|+|.+++.|++||+.++... + +++..++++.+++..++. ...+..+.+|||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 149 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSG 149 (250)
T ss_pred cchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCH
Confidence 38999999999889999999876321 1 123344555555543332 224556779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEec
Q 000511 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 733 GQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1455)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQE-LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999887765 433 3457899999999998765 9999999999999999
Q ss_pred CHHHHH
Q 000511 812 SSADLA 817 (1455)
Q Consensus 812 ~~~~l~ 817 (1455)
+.+++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14240 228 DTVDLF 233 (250)
T ss_pred CHHHHH
Confidence 988874
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=323.67 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=169.0
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEcC------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~-----~~~G~i~~~~------ 668 (1455)
..++++|++++|.. . ++|+|+||++++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS---F---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC---E---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 46899999999853 2 35999999999999999999999999999999999876 4799998765
Q ss_pred ---------cEEEEcCCCCCCCcCHHHHhccCCCC---C---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccH
Q 000511 669 ---------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 ---------~i~y~~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGG 733 (1455)
.++|++|+|.+++.|++|||.++... . +++..++++.+++..++.. ..+..+.+||||
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 155 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGG 155 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHH
Confidence 38999999999988999999876421 1 2334455666666544431 235567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEe---------
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD--------- 803 (1455)
Q Consensus 734 QkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~--------- 803 (1455)
||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHE-LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999988775 333 3446899999999998765 99999998
Q ss_pred CCeEEEecCHHHHHh
Q 000511 804 KGQVKWIGSSADLAV 818 (1455)
Q Consensus 804 ~G~i~~~g~~~~l~~ 818 (1455)
+|++++.|+.+++..
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 799999999988854
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=322.06 Aligned_cols=197 Identities=21% Similarity=0.312 Sum_probs=164.0
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
++++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 3 LYLEGLSVSFDG---F---KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred EEEEeeEEEcCC---e---EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 678999998852 1 359999999999999999999999999999999999999999998865
Q ss_pred -cEEEEcCCCCCCCc-CHHHHhccCCCCC---------------HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000511 669 -SIAYVPQVPWILSG-TIRDNILFGKNYD---------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~---------------~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LS 731 (1455)
.++|++|++.++++ |++||+.++...+ +++..+.++..+++ ........+||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 145 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAGLLS 145 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCC
Confidence 38999999999886 9999998753211 12233334433332 22345667899
Q ss_pred cHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEeCCeEEEe
Q 000511 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1455)
Q Consensus 732 GGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1455)
||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.++. ||+|++|++|++++.
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL-LKS-LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH-HHH-HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999999988775 333 3346899999999999875 999999999999999
Q ss_pred cCHHHHH
Q 000511 811 GSSADLA 817 (1455)
Q Consensus 811 g~~~~l~ 817 (1455)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=338.57 Aligned_cols=188 Identities=26% Similarity=0.393 Sum_probs=157.9
Q ss_pred ccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC---------------------cEEEEcCCCCC
Q 000511 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------------SIAYVPQVPWI 679 (1455)
Q Consensus 621 ~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~---------------------~i~y~~Q~p~l 679 (1455)
.+|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| .++||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 359999999999999999999999999999999999999999998875 39999999999
Q ss_pred CC-cCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEE
Q 000511 680 LS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751 (1455)
Q Consensus 680 ~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~il 751 (1455)
++ .|++|||.++.. .++ ++..++++..+|.... .....+|||||||||+|||||+.+|+|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 87 699999998642 222 2345566666665432 2344589999999999999999999999
Q ss_pred EEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 752 MLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 752 llDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
|||||||+||+.+.+.+.+.+..-....++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999998887633211123789999999999864 5999999999999999999998643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=301.28 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=167.5
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------- 668 (1455)
.+++|++..|.. ..+|+++||++++||+++++|+||+||||||++|.|..++.+|+|..+|
T Consensus 4 L~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 4 LEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred eeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 567788877753 2359999999999999999999999999999999999999999999987
Q ss_pred -cEEEEcCCCCCCCc-CHHHHhccCCCCCHH-HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHc
Q 000511 669 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1455)
Q Consensus 669 -~i~y~~Q~p~l~~~-ti~~nI~~g~~~~~~-~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly 745 (1455)
.|+||||.-.+|.. ||+||+..|....+. ...+. .++.-.+.+|. .......++.+|||||||-+|+||||.
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 59999999999975 999999987433221 11110 02222334443 223456788899999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-C-CceEEEEccCccc-cccCCEEEEEeCCeEEEecCHHHHHhc
Q 000511 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-L-QKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 746 ~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~-~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1455)
++|++|+||||+.+|-|...+.|++. +.. +. + +.||++|.++..+ ++.||+.|+|++|+|+.+|+.+|+..+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~-i~~-l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEA-IKE-LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHH-HHH-HHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999987 333 22 2 5699999999987 556999999999999999999998653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=326.31 Aligned_cols=201 Identities=28% Similarity=0.406 Sum_probs=167.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+.. ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSGS-----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCCC-----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 36789999999532 1359999999999999999999999999999999999999999999865
Q ss_pred -cEEEEcCCCC--CCCcCHHHHhccCC---CCCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 -SIAYVPQVPW--ILSGTIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 -~i~y~~Q~p~--l~~~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.++||+|+|. +++.|++||+.++. .++++ +.++.++.+++...+. .....||||||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl 146 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRV 146 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHH
Confidence 3899999983 67789999998753 23432 3456666666654333 34458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccc-cCCEEEEEeCCeEEEecCHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l 816 (1455)
+||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999998888775 332122 3789999999999985 5999999999999999999988
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
..
T Consensus 226 ~~ 227 (277)
T PRK13652 226 FL 227 (277)
T ss_pred hc
Confidence 54
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=302.04 Aligned_cols=161 Identities=25% Similarity=0.393 Sum_probs=144.1
Q ss_pred EEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--cEEEEcCCCCC
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWI 679 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~--~i~y~~Q~p~l 679 (1455)
++++|+++.|+.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|+|++
T Consensus 1 i~~~~~~~~~~~~-----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDG-----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCC-----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 3578999998532 2359999999999999999999999999999999999999999999986 79999999999
Q ss_pred CCcCHHHHhccCCCCCHHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHHHccCCCEEEEcCCccc
Q 000511 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSA 759 (1455)
Q Consensus 680 ~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARaly~~~~illlDep~s~ 759 (1455)
++.|++||+.++ ....||||||||++||||++++|++++|||||++
T Consensus 76 ~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~ 121 (166)
T cd03223 76 PLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA 121 (166)
T ss_pred ccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 989999999864 2358999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhcCcccCCceEEEEccCccccccCCEEEEEeCC
Q 000511 760 VDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 805 (1455)
Q Consensus 760 lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 805 (1455)
||+.+.+.+.+. +.. . ++|+|++||+.+....||++++|++|
T Consensus 122 LD~~~~~~l~~~-l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 122 LDEESEDRLYQL-LKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred cCHHHHHHHHHH-HHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999988876 332 2 58999999999988789999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=324.38 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=165.8
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|+. . .+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE---H---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 45899999999852 2 359999999999999999999999999999999999999999998765
Q ss_pred ---------------cEEEEcCCCCCCCc-CHHHHhccCC----CCCH----HHHHHHHHHhcchHHHhhccCCCccccc
Q 000511 669 ---------------SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIG 724 (1455)
Q Consensus 669 ---------------~i~y~~Q~p~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig 724 (1455)
.++|++|+|.++.. |++||+.++. ..++ ++..+.++..++...+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~ 147 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QG 147 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hh
Confidence 38999999998875 9999997642 1222 2333444444443221 13
Q ss_pred CCCCccccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcccccc-CCEEEEEe
Q 000511 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 803 (1455)
Q Consensus 725 ~~g~~LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~ 803 (1455)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+. +......++|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 45678999999999999999999999999999999999999988875 33312347899999999999885 99999999
Q ss_pred CCeEEEecCHHHHHh
Q 000511 804 KGQVKWIGSSADLAV 818 (1455)
Q Consensus 804 ~G~i~~~g~~~~l~~ 818 (1455)
+|++++.|+++++..
T Consensus 227 ~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 227 QGKIEEEGAPEQLFG 241 (257)
T ss_pred CCEEEEeCCHHHhhh
Confidence 999999999888743
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=326.58 Aligned_cols=203 Identities=26% Similarity=0.347 Sum_probs=168.2
Q ss_pred eEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~------------ 668 (1455)
.++++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKESD---VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCCc---CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 4789999999964211 2359999999999999999999999999999999999999999999875
Q ss_pred -cEEEEcCCCC--CCCcCHHHHhccCCC---CCH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHH
Q 000511 669 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1455)
Q Consensus 669 -~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRv 738 (1455)
.++|++|+|. +++.|+.|||.++.. ..+ ++++++++.+++.... ......||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRV 149 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHH
Confidence 3899999984 667899999987521 222 2345566666664322 234568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHHH
Q 000511 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1455)
Q Consensus 739 alARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1455)
+||||++.+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999988775 332122 278999999999998889999999999999999998875
Q ss_pred h
Q 000511 818 V 818 (1455)
Q Consensus 818 ~ 818 (1455)
.
T Consensus 229 ~ 229 (277)
T PRK13642 229 A 229 (277)
T ss_pred c
Confidence 4
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.98 Aligned_cols=205 Identities=26% Similarity=0.367 Sum_probs=168.9
Q ss_pred CCceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEcC----
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG---- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~-----~~G~i~~~~---- 668 (1455)
....++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---K---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECC---e---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 3456899999999952 2 359999999999999999999999999999999999874 899998754
Q ss_pred -----------cEEEEcCCCCCCCcCHHHHhccCCC---C-CH----HHHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000511 669 -----------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1455)
Q Consensus 669 -----------~i~y~~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~ 729 (1455)
.++|++|++.+++.|++||+.++.. . .+ ++..++++..++..++. +..+..+.+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 168 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFG 168 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCccc
Confidence 4899999999998899999987532 1 11 23444555555544332 234667889
Q ss_pred cccHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCccccc-cCCEEEEEeCCeEE
Q 000511 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 808 (1455)
Q Consensus 730 LSGGQkqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~ 808 (1455)
|||||||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL-ITE-LKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998887775 433 334689999999999876 59999999999999
Q ss_pred EecCHHHHH
Q 000511 809 WIGSSADLA 817 (1455)
Q Consensus 809 ~~g~~~~l~ 817 (1455)
+.|+++++.
T Consensus 247 ~~g~~~~~~ 255 (272)
T PRK14236 247 EYGDTDTLF 255 (272)
T ss_pred ecCCHHHHh
Confidence 999988874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=317.68 Aligned_cols=197 Identities=25% Similarity=0.298 Sum_probs=161.0
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|++++|..... ..++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~ 82 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEH--ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR 82 (228)
T ss_pred ceEEEeeeEEEccCCCc--ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH
Confidence 35889999999864211 01359999999999999999999999999999999999999999998764
Q ss_pred ------cEEEEcCCCCCCCc-CHHHHhccCC---CCC----HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHH
Q 000511 669 ------SIAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1455)
Q Consensus 669 ------~i~y~~Q~p~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQ 734 (1455)
.++|++|+|.++.. |++||+.++. ..+ +++..+.++.+++...++ ....+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge 151 (228)
T PRK10584 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGE 151 (228)
T ss_pred HHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHH
Confidence 38999999988875 9999998642 112 234566677777654433 2345899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEe
Q 000511 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWI 810 (1455)
Q Consensus 735 kqRvalARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~ 810 (1455)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+..||++++|++|+++++
T Consensus 152 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 152 QQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999998888776 332112 37899999999999888999999999998753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=319.52 Aligned_cols=197 Identities=28% Similarity=0.424 Sum_probs=161.7
Q ss_pred EEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC--------------
Q 000511 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1455)
Q Consensus 603 ~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~-------------- 668 (1455)
+++|+++.|+. . ++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 2 EVSNLNVYYGQ---S---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred EEEeEEEEeCC---e---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 57889998853 2 359999999999999999999999999999999999999999998865
Q ss_pred cEEEEcCCCCCCCc-CHHHHhccCCC-CC---HHHHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHHHHHHHH
Q 000511 669 SIAYVPQVPWILSG-TIRDNILFGKN-YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1455)
Q Consensus 669 ~i~y~~Q~p~l~~~-ti~~nI~~g~~-~~---~~~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqRvalARa 743 (1455)
.++|++|++.++.. |++||+.++.. .. .+.+.++++..+. ..........+||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred CeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHH
Confidence 38999999998876 99999987532 11 2233444443321 1122345667899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcccccc-CCEEEEEeCCeEEEecCHHHH
Q 000511 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 744 ly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1455)
++.+|+++||||||++||+.+.+++.+. +..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRV-IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999988775 332122 37899999999999885 999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=325.13 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=166.5
Q ss_pred ceEEEEcceEeecCCCcccccccceeceeEecCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEcC-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStll~~l~g~~~~~~G~i~~~~----------- 668 (1455)
..++++|+++.|.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSDA----SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCCC----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 3589999999996421 2359999999999999999999999999999999999999999999876
Q ss_pred --cEEEEcCCCC--CCCcCHHHHhccCCC---CCHH----HHHHHHHHhcchHHHhhccCCCcccccCCCCccccHHHHH
Q 000511 669 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 --~i~y~~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~l~~gd~t~ig~~g~~LSGGQkqR 737 (1455)
.++|++|+|+ +++.|+++|+.++.. .+.+ +..++++..++... ......+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 150 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQR 150 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHH
Confidence 3899999996 456699999988632 2222 23344455554332 234566899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCccccccCCEEEEEeCCeEEEecCHHHH
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816 (1455)
Q Consensus 738 valARaly~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l 816 (1455)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988775 333122 37899999999998888999999999999999999887
Q ss_pred Hh
Q 000511 817 AV 818 (1455)
Q Consensus 817 ~~ 818 (1455)
..
T Consensus 230 ~~ 231 (269)
T PRK13648 230 FD 231 (269)
T ss_pred hc
Confidence 54
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1455 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-41 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-20 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-41 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-39 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-33 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-38 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-37 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-37 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-36 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-36 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-36 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-36 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-35 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-35 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-34 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-34 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-34 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-34 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-32 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-32 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-31 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-31 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-31 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-10 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-10 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 4e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-13 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-30 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 6e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-11 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-28 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-12 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-28 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-28 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-28 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-28 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-27 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-23 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-22 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-22 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-22 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-14 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-12 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 3e-12 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-10 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 6e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 6e-10 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-09 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 1g29_1 | 372 | Malk Length = 372 | 3e-08 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 6e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-08 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 2e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-04 | ||
| 2vf7_A | 842 | Crystal Structure Of Uvra2 From Deinococcus Radiodu | 2e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 349 bits (896), Expect = e-109
Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 3/246 (1%)
Query: 1210 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1269
WP G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL
Sbjct: 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
Query: 1270 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1329
G+I +DG++ + + R F V+PQ F+F G+ R NLDP + D +IW V
Sbjct: 71 LNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
++ ++ +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1447
T I++ + TVI RI +L D+ L+++ + + + L F
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249
Query: 1448 SFVRAS 1453
+ S
Sbjct: 250 AGFIGS 255
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-26
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
E N +L +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSITL 89
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYS-----ETLKACTLDVDISLMVG 717
+ +PQ +I SGT R N+ DP ++S + L I G
Sbjct: 90 EQWRKAFGVIPQKVFIFSGTFRKNL------DPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ + G LS G + + LAR+V + I +LD+ + +D + I +
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR--TLKQA 201
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFDTS 833
T ILC ++A+ D +V+++ +V+ S +L A +GF + + +
Sbjct: 202 FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN-- 259
Query: 834 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 890
+ + T ++ + + V + +++++ + + L + +
Sbjct: 260 -FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDV-----QVGANMSLGIRPEHLL 310
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 362 bits (932), Expect = e-104
Identities = 218/1156 (18%), Positives = 448/1156 (38%), Gaps = 145/1156 (12%)
Query: 370 SDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI------ 423
GE+ T ++ D + ++ +IG+ + F G I
Sbjct: 163 DVGELNTRLTDDV-------SKINEGIG--DKIGMFFQAM-----ATFFGGFIIGFTRGW 208
Query: 424 -----TILLIPVNKWIANLIANATEKMMKQKDERIRRTG----EILTHIRTLKMYGWEQI 474
+ + PV A + A ++ + G E+L IRT+ +G ++
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 475 ----FSSWLMKTRSSEVKHLSTRKYLDA--WCVFFWATTPTLFSL-FTFGLFALMGHQLD 527
+++ L + + +K T + + + + ++L F +G ++ +
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS-----YALAFWYGTSLVISKEYS 323
Query: 528 AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSY 587
V T + I +A + + + + + + + +S S
Sbjct: 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII-------DNKPSIDSFSK 376
Query: 588 ISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647
+ N + ++ S Y + +E Q +L ++L + G VA++G G GKS
Sbjct: 377 SGHKPDNIQGN---LEFKNIHFS-YPSRKEVQ--ILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 648 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY 694
+ + + G + G I V Q P + + TI +NI +G+
Sbjct: 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-- 488
Query: 695 DPQSYSETLKACTL-DVD--ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
+ + E KA + I + +GE+G LSGGQ+ R+A+ARA+ I
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 752 MLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
+LD+ SA+D + + L A G +T I+ H + + AD++ D G +
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREG-----RTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 809 WIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD-- 864
G+ +L +Y T + + + ++ N + ++ +
Sbjct: 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRS 663
Query: 865 ---------DAQEIIEVEQRKEGRVELTVYKNYAKFSG--WFITLVICLSAILMQASRNG 913
D + ++ + V + K + W +V AI+ +
Sbjct: 664 TRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPA 723
Query: 914 NDLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 969
+ S V + +++ + ++ I + + ++ F+F +
Sbjct: 724 FSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 970 VHNTLLTKIVNAPVLFFDQ---TPGGRILNRFSSDL----YMIDDSLPFILNILLANFVG 1022
+ + ++ V +FD T G + R ++D L I + AN
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTG-ALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGT 841
Query: 1023 LLGIAVV----LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFT 1078
+ I+++ L+ + + + ++ + K+ + + L+ + S A+
Sbjct: 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM-----LSGQALKDKKELEGSGKIAT-- 894
Query: 1079 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY-SELTASLWLSLRLQLLAAFIISFIA 1137
E + T+ + E F + + + + R + + S + + +
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF------TQAMMYFS 948
Query: 1138 TMAVI---GSR--GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1192
A G+ TF LV A+ + A V + +F + K VS +
Sbjct: 949 -YAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA---KATVSASHI 1004
Query: 1193 LEYMD-VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQV 1249
+ ++ P+ + Q L P+ +G ++F V Y P+ P L ++ ++ G +
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPN-MLEGNVQFSGVVFNY-PTRPSIPVLQGLSLEVKKGQTL 1062
Query: 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS 1309
+VG +G GKS+++ L R G + +DG I V+ LR + +V Q P LF+ S
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 1310 LRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICL 1364
+ +N+ D + +I ++ ++ + ++++ T V + G S GQ+Q I +
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1424
ARAL++ +L LDE T+ +D ++ ++Q A+ +G T I IAHR+ST+ N D I+++
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
Query: 1425 DHGHLVEQGNPQTLLQ 1440
+G + E G Q LL
Sbjct: 1243 QNGKVKEHGTHQQLLA 1258
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 1e-67
Identities = 124/552 (22%), Positives = 229/552 (41%), Gaps = 72/552 (13%)
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 994
++Y + + +++ + + + R K+ I+N + +FD G +
Sbjct: 111 AYYYTGIGAGVLIVAYI---QVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGEL 167
Query: 995 LNRFSSDLYMIDDSLPFILNILLAN---FVGLLGIAVVLSY----VQVFFLLLLVPFWFI 1047
R + D+ I++ + + + F G I + V + +L I
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1107
++K T +E L + +++ A E L T+ AF + + ++ ++
Sbjct: 228 WAK--ILSSFTDKE---LHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEA 280
Query: 1108 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSR---------GNLPATFSTPGLV 1158
+R + ++ ++ + I + A G+ G + F + +
Sbjct: 281 KRLG---IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG 337
Query: 1159 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLSPDWPFQG 1217
++ A+P + +F + V + +D P + PD QG
Sbjct: 338 AFSVGQASP-------NIEAFANA---RGAAYEVFKIIDNKPSIDSFSKSGHKPD-NIQG 386
Query: 1218 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+EF+N+ Y PS L +N ++ G V +VG +G GKS+ + + RL G
Sbjct: 387 NLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ +DG +I VR LR VV Q P LF ++ +N+ + +D+
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR--YGREDVT----------M 493
Query: 1336 EEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+E+E +T V E G S GQ+Q I +ARAL+++ K+L LDE
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
T+ +D ++ +++Q A+ +G T I IAHR+STV N D I D G +VEQGN L++
Sbjct: 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613
Query: 1441 DECSVFSSFVRA 1452
E ++ V
Sbjct: 614 -EKGIYFKLVMT 624
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 4e-30
Identities = 109/536 (20%), Positives = 198/536 (36%), Gaps = 71/536 (13%)
Query: 316 VLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM-TIIYQKCLYVRLAERSEFSDGEI 374
+L I +T L+ F + L+K +LR + +++ Q + + + + G +
Sbjct: 757 ILGIISFITFFLQGFTFGKAGEILTK---RLRYMVFKSMLRQDVSWF---DDPKNTTGAL 810
Query: 375 QTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-----LYTQVKFAFVSGLAITILLIP 429
T ++ D + + ++ FQ L L + + LAI ++
Sbjct: 811 TTRLANDAA---QVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL-LLAIVPIIAI 866
Query: 430 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKH 489
+++ K K+ + + E + + RT+ EQ F + +
Sbjct: 867 AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET-MYAQSLQIPYR 925
Query: 490 LSTRKYLDAWCVFFWATTPTLFS---LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 546
+ +K F + FS F FG + + + V + +
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 547 SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 606
A +S + R +E+ SY + GL + V
Sbjct: 986 QVSSFAPDYAKATVSASHIIRI---------IEKTPEIDSYSTQGLKPNMLEG-NVQFSG 1035
Query: 607 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML------T 660
+ Y VL +SL + KG +A++G G GKS+++ +L
Sbjct: 1036 VVFN-YPTRPSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQ------LLERFYDPM 1086
Query: 661 HGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 707
GS+ G + V Q P + +I +NI +G N SY E ++A
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 708 L----DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
I + +G+KG LSGGQ+ R+A+ARA+ I +LD+ SA+D +
Sbjct: 1147 EANIHQF-IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 764 VARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+ + L A +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1206 SEKVVQEALDKA-----REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 1e-96
Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+ V+M++ T W EE VL ++ + +G L+AV G G+GK+SLL I+G
Sbjct: 1 SLTTTEVVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 656 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
E+ + G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
D +GE G+ LSGGQRAR++LARAVY +D+Y+LD +D + I + +
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 177 -LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 6e-43
Identities = 63/243 (25%), Positives = 106/243 (43%), Gaps = 23/243 (9%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ +NVT ++ L DINF IE G + + G TGAGK+S+L + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1332
+I GR + Q ++ G++++N+ + D+ + SV++ C
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSY---DEYRYRSVIKAC 107
Query: 1333 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
++E++ A + E GI+ S GQR I LARA+ K + + LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1391 -ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSF 1449
I ++ + T I + ++ + D+ILIL G G L + FSS
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ-PDFSSK 226
Query: 1450 VRA 1452
+
Sbjct: 227 LMG 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 2e-96
Identities = 96/217 (44%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660
++ +++AT +W LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM
Sbjct: 3 SITVRNATFTW----ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 661 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
G + GS+AYVPQ WI + ++R+NILFG + Y ++AC L D+ ++ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
IGEKGVNLSGGQ+ R++LARAVY +DIY+ DD LSAVDA V + I N I ML+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 781 -KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
KTRIL TH++ + D+++VM G++ +GS +L
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 2e-42
Identities = 70/244 (28%), Positives = 117/244 (47%), Gaps = 25/244 (10%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
I +N T + S P L+ I F+I G V +VG+ G GKSS+L+AL G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1333
+ + +G A VPQ ++ SLR+N+ ++ SV++ C
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACA 105
Query: 1334 VKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS- 1390
+ ++E G T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1391 ILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448
I +N I + K T I + H +S + +D I+++ G + E G+ Q LL + F+
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAE 224
Query: 1449 FVRA 1452
F+R
Sbjct: 225 FLRT 228
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 2e-93
Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 24/307 (7%)
Query: 560 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 619
+ + +T F E EL + A N+ + D + S+ N
Sbjct: 5 VVMENVTAFW--EEGFGELFEKAKQ-----------NNNNRKTSNGDDSLSF-SNFSLLG 50
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 679
VL ++ + +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739
+ GTI++NI+ G +YD Y +KAC L+ DIS D +GE G+ LSGGQRAR++
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMV 799
LARAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKI 228
Query: 800 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDV 859
+++ +G + G+ ++L +F +S M ++ IL +
Sbjct: 229 LILHEGSSYFYGTFSELQN-------LRPDF-SSKLMGCDSFDQFSAERRNSILTETLHR 280
Query: 860 VSVSDDA 866
S+ DA
Sbjct: 281 FSLEGDA 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-43
Identities = 68/276 (24%), Positives = 114/276 (41%), Gaps = 30/276 (10%)
Query: 1186 MVSLERVLEYMDVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1241
V +E V + + EL + + F N ++ P L DINF
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINF 59
Query: 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301
IE G + + G TGAGK+S+L + G+I GR + Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQ 106
Query: 1302 SPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVG 1357
+ ++ G++++N+ + D+ + SV++ C ++E++ A + E GI+ S G
Sbjct: 107 NSWIMPGTIKENIIGVSY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVL 1416
QR I LARA+ K + + LD +D T I ++ + T I + ++ +
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 1417 NMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452
D+ILIL G G L FSS +
Sbjct: 224 KADKILILHEGSSYFYGTFSELQNLR-PDFSSKLMG 258
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 296 bits (759), Expect = 3e-87
Identities = 127/567 (22%), Positives = 253/567 (44%), Gaps = 32/567 (5%)
Query: 888 YAK-FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCM 946
F I I L IL AS L +D + + +V+ +
Sbjct: 19 TIAPFKAGLIVAGIAL--ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 947 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMID 1006
+ + ++ ++ S + + + L ++ PV FFD+ G +L+R + D +
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136
Query: 1007 DSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYSKLQFFYRST 1058
S L ++ ++G+ +++ Y L++L P + + + ++
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118
+ ++ + + + L G + F ++ +F + + ++AS
Sbjct: 197 QNTMGQVTTSA--------EQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
+QL+A+ ++F+ S ++ + + + + S ++ L + +
Sbjct: 249 SISDPIIQLIASLALAFVL---YAASFPSVMDSLTAGTITVV-FSSMIALMRPLKSLTNV 304
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1238
+ ++ M + + + +D QE+ G + + G +EF+NVT Y AL +
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR---ATGDLEFRNVTFTYPGREVPALRN 361
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298
IN I G V +VGR+G+GKS+I + + R I G IL+DG ++ + LR + A+
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 1299 VPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1353
V Q+ LF ++ +N+ + + +I + + + + GL+T + E+G+
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S GQRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 1414 TVLNMDEILILDHGHLVEQGNPQTLLQ 1440
T+ DEI++++ G +VE+G LL
Sbjct: 541 TIEQADEIVVVEDGIIVERGTHSELLA 567
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 9e-34
Identities = 114/586 (19%), Positives = 221/586 (37%), Gaps = 79/586 (13%)
Query: 272 AYGYPY----ICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTS 325
P+ I G+ ++N + LL L+ F + L + + +
Sbjct: 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPLVVIGLM 75
Query: 326 ILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRT 385
IL+ S+ +S + K+ ++ ++ + + +A + S G + + ++ D++
Sbjct: 76 ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE-- 133
Query: 386 VNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 440
+A+S A + IG+ + + Y + + I ++L P+ +++
Sbjct: 134 -QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI-----ILVVLAPIVSIAIRVVSK 187
Query: 441 ATEKMMKQKDERI----RRTGEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLST 492
+ K + ++L + + ++G +++ F K R +K +S
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 493 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 552
D + + F + L A + + +L+ PL S V
Sbjct: 248 SSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 553 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NFNSKDMAVIMQDAT 608
+ + L L + + E ++ + L F
Sbjct: 306 AQFQRGMAACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFT------------ 350
Query: 609 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 668
Y E L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 351 ---YPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 669 -------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDIS 713
+A V Q + + T+ +NI + + Y + E + I+
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LS 770
M G IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I L
Sbjct: 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 771 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T ++ H + I AD +VV++ G + G+ ++L
Sbjct: 525 EL-----QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 291 bits (746), Expect = 1e-85
Identities = 118/519 (22%), Positives = 234/519 (45%), Gaps = 36/519 (6%)
Query: 938 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 997
++L + ++ ++ S +++ L ++ PV FFDQ G +L+R
Sbjct: 69 FMILGLM-FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
Query: 998 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYS 1049
+ D + + L ++ ++G+ ++ + L+++ P F+
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 1050 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109
+ + R+ + + S + + L G + ++ ++ +F + ++
Sbjct: 188 RFRKISRNMQTAMGHVTSSA--------EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 1110 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV---GLALSYAA 1166
+ ++A +Q++A+ + + + S ++ A +
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVL---FLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 1167 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1226
P+ +L + S F M + + + MD+ E G G ++ ++VT
Sbjct: 297 PLKAL-TSVTSEFQRG---MAACQTLFGLMDLETERDNGKYEAER---VNGEVDVKDVTF 349
Query: 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1286
Y+ AL ++F+I G V +VGR+G+GKS+I N R + G I +DG ++ +
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 1287 TPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV-- 1341
+ +LR FA+V Q+ LF ++ +N+ + +I + H E +E +
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE-QIEQAARQAHAMEFIENMPQ 468
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
GL+T + E+G S S GQRQ + +ARALL+ + VL LDE T+ +D ++ +Q A+ K
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 1402 GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
TV+ IAHR+ST+ DEIL++D G ++E+G LL
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-32
Identities = 107/557 (19%), Positives = 209/557 (37%), Gaps = 67/557 (12%)
Query: 293 AGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSI 350
LL L+ F S L +L + ++ S+ LS + + +
Sbjct: 43 YMISLLKPLLDEGFGNAESNFL--RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQM 100
Query: 351 MTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQ-----IGVA 405
++ +++ + + S G + + ++ D++ +A + A + IG+
Sbjct: 101 RRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE---QVAGATSRALVSIVREGASIIGLL 157
Query: 406 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRTGEILT 461
+ + + + + I++ PV + + ++ K+ + + ++L
Sbjct: 158 TLMFWNSWQLSL-----VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLK 212
Query: 462 HIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFG 517
+ + YG +++ F R +K +S + D + +
Sbjct: 213 GHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA--VLFLA 270
Query: 518 LFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577
+ +L + L+ PL + V + + + L +
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM-------- 322
Query: 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVA 637
+ + NG + V ++D T + Y E+ L+ VS +P+G VA
Sbjct: 323 -----DLETERDNGKYEAERVNGEVDVKDVTFT-YQGKEKP---ALSHVSFSIPQGKTVA 373
Query: 638 VIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTI 684
++G GSGKS++ N + GSI G A V Q + + TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 685 RDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742
+NI + Y + + + I M G IGE G +LSGGQR R+A+AR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 743 AVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMV 799
A+ + + +LD+ SA+D + R I L KT ++ H + I AD +
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL-----QKNKTVLVIAHRLSTIEQADEI 548
Query: 800 VVMDKGQVKWIGSSADL 816
+V+D+G++ G ADL
Sbjct: 549 LVVDEGEIIERGRHADL 565
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 1e-82
Identities = 114/533 (21%), Positives = 233/533 (43%), Gaps = 32/533 (6%)
Query: 923 DTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982
T + + T + L IF + + +R + + S + + L +
Sbjct: 49 ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108
Query: 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLL 1039
F+ G++++R +D+ D + L + + + ++ ++ ++ V L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 1040 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099
+ PF+ + + + R+L R S + + + E + G S +++F ED
Sbjct: 169 FIFPFYILTV---YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225
Query: 1100 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVG 1159
F + + + + + + + + +G+ + + + L
Sbjct: 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVI---GVGAYLAISGSITVGTLAA 282
Query: 1160 ---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWP 1214
P+ L ++ T++ S++RV + +D + G Q +
Sbjct: 283 FVGYLELLFGPLRRL-VASFTTLTQS---FASMDRVFQLIDEDYDIKNGVGAQPIEI--- 335
Query: 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R +
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN-----LDPFHMNDDLKIWSVL 1329
GQIL+DG NI + LR + +V Q LF ++++N D ++
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAA 451
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+VE G + L+
Sbjct: 512 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-27
Identities = 103/568 (18%), Positives = 203/568 (35%), Gaps = 75/568 (13%)
Query: 290 IGFAGPLLLNKLIKFLQQGSGHLDGYV-------LAIALGLTSILKSFFDTQYSFHLSKL 342
I PLL+ I + + IAL + I++ + +
Sbjct: 29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT 88
Query: 343 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQ 401
K+ I +Y + + G++ + + D ++T + + W
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT 148
Query: 402 -IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRT 456
I + + VK + + P + K+ +++ + +
Sbjct: 149 IIIALSIMFFLDVKLTL-----AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFL 203
Query: 457 GEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 512
E + I +K + E F + +KH Y A P +
Sbjct: 204 HERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII-- 261
Query: 513 LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 572
+ G + + + + + L PL L +F S+ R+ + +
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI--- 318
Query: 573 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPK 632
+ ++++ + + + + + + Y + + +L ++L + K
Sbjct: 319 DEDYDIKNGVGAQP-----IEIKQGR---IDIDHVSFQ-Y---NDNEAPILKDINLSIEK 366
Query: 633 GSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASG-------------SIAYVPQ 675
G VA +G G GKS+L+N I +T G I G I V Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLI----PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 676 VPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLS 731
+ S T+++NIL G+ P + E ++A + I + G +GE+GV LS
Sbjct: 423 DNILFSDTVKENILLGR---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTH 788
GGQ+ RL++AR + I +LD+ SA+D + I L +T ++ H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-----RTTLIVAH 534
Query: 789 NVQAISAADMVVVMDKGQVKWIGSSADL 816
+ I+ AD +VV++ G + G+ +L
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHREL 562
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 248 bits (636), Expect = 9e-71
Identities = 141/547 (25%), Positives = 237/547 (43%), Gaps = 90/547 (16%)
Query: 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 996
Y+++L S L ++ S ++ L K+ PV FFD+TP G I++
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 997 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIY 1048
R +D+ I++ L + + V L G +++ V V L +VP +
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 1049 SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1108
S+ + ++ R L +L+ + E ++G + I+ F E+ M KF +
Sbjct: 199 SQTRKYFYENQRVLGQLNGI--------IEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 1109 RTSYSELTASLWLSLRLQLLAAFI---ISFI-----ATMAVIGS----RGNLPATFSTPG 1156
+ + Q+ + + ++ + A ++ G + + T G
Sbjct: 251 KVGT-----------KAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDII-----TVG 294
Query: 1157 LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216
+ + Y+ L + F + + S ER+ E +D+ +E+ +
Sbjct: 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELR--EVR 352
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV Y P L DI F I+ G +V +VG TG+GK++I+N L R + GQ
Sbjct: 353 GEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMNDDLKIWSV 1328
ILVDG++I LR +V Q LF ++++NL D
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD------------- 458
Query: 1329 LEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSK 1373
EE++ G ET + ++G S GQRQL+ + RA L + K
Sbjct: 459 -------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511
Query: 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQG 1433
+L LDE T+NVD +T +Q A+ +G T I IAHR++T+ N D I++L G +VE G
Sbjct: 512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571
Query: 1434 NPQTLLQ 1440
L+Q
Sbjct: 572 KHDELIQ 578
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 4e-14
Identities = 118/599 (19%), Positives = 213/599 (35%), Gaps = 130/599 (21%)
Query: 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 331
+ + I + + V+ +G P L+ K I L + I + L S
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 332 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD---------------GEIQT 376
+ L+ IM + Q ++ RL R E + G+I +
Sbjct: 94 --FW----------LQGKIMLTLSQDVVF-RL--RKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 377 FMSVDTDRTVNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVN 431
+ D D N+ N ++ F G + + V + +T+ ++P+
Sbjct: 139 RVINDVD---NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL-----VTLSIVPLT 190
Query: 432 KWIANLIANATEKM-MKQKDERIRRTG---EILTHIRTLKMYGWEQIFSSWLMKTRSSEV 487
I ++++ T K + + + G E ++ + +K++ E+ + E
Sbjct: 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE---------KEMEK 241
Query: 488 KHLSTRKYLDAWC--VFFWATTP---TLFSLFTFGLFALMGHQLDAAMVFT--CLALF-- 538
F P + + F L + G L + T +A F
Sbjct: 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 539 --NSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFN 596
PLN N + A S R+ L + + E + G
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELREVRG----- 353
Query: 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 656
+ ++ S Y +++ VL ++ + G VA++G GSGK++++N +
Sbjct: 354 ----EIEFKNVWFS-Y----DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL--- 401
Query: 657 MM----LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQ-S 698
M + G I G SI V Q + S T+++N+ +G P +
Sbjct: 402 -MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN---PGAT 457
Query: 699 YSETLKACTL-DVD--ISLMVGG-DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754
E +A L D I + G + + + G +LS GQR LA+ RA I +LD
Sbjct: 458 DEEIKEAAKLTHSDHFIKHLPEGYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 755 DVLSAVDA------QVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
+ S VD Q A M M KT I+ H + I AD+++V+ G++
Sbjct: 517 EATSNVDTKTEKSIQAA--------MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-65
Identities = 117/433 (27%), Positives = 208/433 (48%), Gaps = 32/433 (7%)
Query: 1024 LGIAVVLSYVQVFFL-LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLN 1082
+ I V LS V +F + +++ F ++ K +R ++ V R E L
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLL 210
Query: 1083 GSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142
G +RAF+ E+Y F++ +R+ ++A + L L I + +AV+
Sbjct: 211 GVRVVRAFRREEYENENFRKANESLRRSI---ISAFSLIVFALPLF--IFIVNMGMIAVL 265
Query: 1143 --GSRGNLPATFSTPGLVGLALSYAAPI---VSLLGNFLSSFTETEKEMVSLERVLEYMD 1197
G ++ +Y I + ++GN L+ + S +RVLE ++
Sbjct: 266 WFGGVLVRNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIV---RASASAKRVLEVLN 321
Query: 1198 VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGA 1257
+L+ +G + F+NV RY + L +NF+++ G+ V ++G TG+
Sbjct: 322 EKPAIEEADNALALP-NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 1258 GKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--- 1314
GKS+++N + RL G++ VD L++ ++DLRG + VPQ LF G++++NL
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 1315 DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1372
DD +I + + + + ++ G ++ V+ G +FS GQ+Q + +ARAL+K
Sbjct: 441 RE-DATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQ 1432
KVL LD+CT++VD T + + + KG T I +I T L D+IL+L G +
Sbjct: 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGF 558
Query: 1433 GNPQTLLQDECSV 1445
G + LL+ C
Sbjct: 559 GTHKELLEH-CKP 570
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 7e-31
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
Y N + VL+ V+ + GSLVAV+GE GSGKS+L+N I + G +
Sbjct: 351 YFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 669 ----------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLK-----ACTLDVDIS 713
I+ VPQ + SGTI++N+ +G+ + + + A D I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR---EDATDDEIVEAAKIAQIHDF-II 463
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
+ G + + G N SGGQ+ RL++ARA+ + +LDD S+VD + IL
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG-- 521
Query: 774 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+ + T + T + AD ++V+ +G+V G+ +L
Sbjct: 522 LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 218 bits (558), Expect = 1e-64
Identities = 87/255 (34%), Positives = 130/255 (50%), Gaps = 33/255 (12%)
Query: 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1331
GQ+L+DG ++ LR + VV Q L S+ DN+ +P M+
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSV---------- 112
Query: 1332 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376
E+V G T V E G S GQRQ I +ARAL+ + K+L
Sbjct: 113 ----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1436
DE T+ +D ++ ++ + CKG TVI IAHR+STV N D I++++ G +VEQG +
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228
Query: 1437 TLLQDECSVFSSFVR 1451
LL + S++S +
Sbjct: 229 ELLSEPESLYSYLYQ 243
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGD 719
+ V Q +L+ +I DNI S + + A L IS + G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICK 193
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T I+ H + + AD ++VM+KG++ G +L
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 219 bits (561), Expect = 3e-64
Identities = 84/275 (30%), Positives = 137/275 (49%), Gaps = 11/275 (4%)
Query: 1172 LGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWPFQGLIEFQNVTMRYK 1229
+ + +E + + + E +L G L +G IEF+NV Y
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQ---KGRIEFENVHFSYA 64
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289
L D++FT+ G + +VG +GAGKS+IL LFR I G I +DG +I
Sbjct: 65 DGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1290 RDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVKEEVEAV--GLET 1345
LR VVPQ LF ++ DN+ +D ++ + + + + + A G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 1346 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1405
V E G+ S G++Q + +AR +LK+ ++ LDE T+ +D +Q +++ C T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 1406 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
I +AHR+STV+N D+IL++ G +VE+G + LL
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 40/305 (13%)
Query: 541 LISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSNFNSKD 599
+ ++ FI + + L + + E++ + G F +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
+ Y + L VS + G +A++G G+GKS++L + +
Sbjct: 61 FS----------Y----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC 706
+ G I G I VPQ + + TI DNI +G+ E A
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAA 164
Query: 707 ---TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
+ I G +GE+G+ LSGG++ R+A+AR + I +LD+ SA+D
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 764 VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLY 821
R I ++ + +T I+ H + + AD ++V+ G + G L +Y
Sbjct: 225 NERAIQAS--LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282
Query: 822 SGFWS 826
+ W
Sbjct: 283 ADMWQ 287
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 212 bits (543), Expect = 2e-62
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ ++V Y L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHV 1334
+DG I N + + R + V Q + G++R+NL D+ +W VL+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE-DLWQVLDLAFA 118
Query: 1335 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
+ VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1393 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
Q A+ S KG T + IAHR+ST+++ D+I ++ G + G L+
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMML--------TH 661
++ +L +S S++A G G GKS++ + + GE+ + +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 662 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGG 718
+ + I +V Q I++GTIR+N+ +G D + + + L + M
Sbjct: 72 ENWRSQ--IGFVSQDSAIMAGTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQ 128
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMG 775
+GE+GV +SGGQR RLA+ARA I MLD+ +++D++ + L +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--- 185
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS--LYSGFWS 826
M +T ++ H + I AD + ++KGQ+ G +L + LY+ + S
Sbjct: 186 --MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 9e-57
Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%)
Query: 1215 FQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
F IEF +V Y + + L INF I GT +VG TG+GKS+I L+R
Sbjct: 14 FGVNIEFSDVNFSYPKQTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEK 1331
G I + G N+ +R +VPQ LF +++ N+ ++ D ++ +
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 1332 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+ + +EA+ +T V G+ S G+RQ I +AR LLK K++ DE T+++D++T
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
+ Q A+ K T+I IAHR+ST+ + + I++L+ G +VE+G + LL+
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL------GEMM--------LT 660
++ + L ++ +P G+ A++G GSGKS++ + G++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 661 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC---TLDVDISLMVG 717
SI + I VPQ + + TI+ NIL+GK + E +KA L I +
Sbjct: 88 RNSIRSI--IGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPK 143
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+G KG+ LSGG+R R+A+AR + I + D+ S++D++ +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA--VEDL 201
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
+T I+ H + IS+A+ +++++KG++ G+ DL Y+ W+
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 2e-54
Identities = 80/258 (31%), Positives = 119/258 (46%), Gaps = 32/258 (12%)
Query: 1214 PFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1271
+GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++ L L
Sbjct: 12 NMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1272 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
GG++L+DG ++ L + A V Q P LF S R+N I L +
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------IAYGLTR 119
Query: 1332 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376
EE+ AV G +T V E+G S GQRQ + LARAL++ ++L
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1377 LDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGN 1434
LD T+ +DA +Q + S E TV+ I ++S IL L G + EQG
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1435 PQTLLQDECSVFSSFVRA 1452
L++ + S V A
Sbjct: 240 HLQLMERG-GCYRSMVEA 256
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 33/219 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMM--------LTHGSIHA 666
VL ++ L G + A++G GSGKS++ + G+++ H +H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH- 92
Query: 667 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYI 723
+A V Q P + + R+NI +G P + E IS G +
Sbjct: 93 -TQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA------QVARWILSNAIMGPH 777
GE G LSGGQR +ALARA+ + +LD+ SA+DA Q L + P
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYES---PE 204
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T +L T + A ++ + +G V G+ L
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-32
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 34/240 (14%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I+ +NV + K +L +IN + G V I+G G+GK+++L A+ L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLLP-YSG 58
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD------LKIWS 1327
I ++G+ + R +R P + + D LK
Sbjct: 59 NIFINGMEV-----RKIRNYIRYSTNLPEAY---------EIGVTVNDIVYLYEELKGLD 104
Query: 1328 VLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ E ++A+ L E ++ S GQ L+ + AL +++ LDE NVDA
Sbjct: 105 ---RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ-GNPQTLLQDECS 1444
++ I G I + H + + + G+ ++ + LL+
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIV 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668
+ + + L ++L + G V ++G GSGK++LL +I G ++ G+I +G
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 720
I Y +P + + T+ D + K D + E LK +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK----------ALKLGE 119
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
+ K LS GQ + + A+ +I LD+ VDA R ++S I
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-RHVISRYI---KEYG 175
Query: 781 KTRILCTHNVQ-AISAADMVVVMDKG 805
K IL TH + + G
Sbjct: 176 KEGILVTHELDMLNLYKEYKAYFLVG 201
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 3e-31
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 24/239 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
+++ + + Y A L IN I+ G I+G G GKS++ N + + +
Sbjct: 7 ILKVEELNYNYSDGTHA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---S 62
Query: 1275 GQILVDGLNIINTP--VRDLRGRFAVVPQSPF--LFEGSLRDNLD----PFHMNDDLKIW 1326
G+IL D I + + LR +V Q P LF S+ D +N L
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ--DVSFGA--VNMKLPED 118
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ ++ V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D
Sbjct: 119 EIRKR--VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 1387 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
S + + + G+T+I H I V D + ++ G ++ QGNP+ + ++
Sbjct: 177 MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-14
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 28/221 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ 675
+ L +++ + +G + A++G G GKS+L + G + + G I I Y +
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 676 VPW----------------ILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISL-MVG 717
+ S ++ ++ FG N E K VD +L G
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKR----VDNALKRTG 132
Query: 718 GDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ ++ +K LS GQ+ R+A+A + + +LD+ + +D I+ +
Sbjct: 133 --IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
L T I+ TH++ D V VM +G+V G+ ++
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-31
Identities = 51/241 (21%), Positives = 99/241 (41%), Gaps = 23/241 (9%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
LI+ + K L I++ I G + + G GAGK+++LN L P G
Sbjct: 21 LIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 1276 QILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-----NDDLKIWSV 1328
+ + G + +R V S ++ + + ++
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 1329 L---EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ + + ++ VG+ ++ S G++Q + +ARAL+ +VL LDE A +D
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 1386 AQT-ASILQ--NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQD 1441
S+L +++S + +I + H I + +IL+L G ++QG + +L
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253
Query: 1442 E 1442
E
Sbjct: 254 E 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 46/248 (18%)
Query: 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658
M + + + +L ++S + KG + G G+GK++LLN +
Sbjct: 19 HMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
Query: 659 LTHGSIHASG---------------SIAYVPQ---VPWILSGTIRDNILFGKN-----YD 695
T G+++ G I +V + + D ++ G Y
Sbjct: 73 ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ 132
Query: 696 PQSYSETLKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 753
+A L V +S A + LS G++ R+ +ARA+ + +L
Sbjct: 133 DIDDEIRNEAHQLLKLVGMS-------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185
Query: 754 DDVLSAVDAQVARWILSN----AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVK 808
D+ + +D +LS + P + I TH ++ + ++++ GQ
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTL---AMIYVTHFIEEITANFSKILLLKDGQSI 242
Query: 809 WIGSSADL 816
G+ D+
Sbjct: 243 QQGAVEDI 250
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-30
Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 35/242 (14%)
Query: 1219 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
IE NV+ + P AL +++ I G + + G TG+GKS++ + L + P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP- 59
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRD-------NLDPFHMNDDL 1323
G +L DG ++R + Q P F + D N P
Sbjct: 60 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------- 109
Query: 1324 KIWSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 110 ---DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1382 ANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLL 1439
+D + + L + + G TVI I+H I TV+N D +++L+ G V G L
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFL 226
Query: 1440 QD 1441
+
Sbjct: 227 EK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M + + + + + + L VSL + +G + V G GSGKS+LL + G +
Sbjct: 1 MRIEVVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 660 THGSIHASG----------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKAC 706
T G + G +I Q P + + D + F KN+ P + +
Sbjct: 60 TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPL- 116
Query: 707 TLDVDISL-MVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
V ++ VG D ++ LSGG++ R+A+A + H DI +LD+ L +D +
Sbjct: 117 ---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 765 ARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+L + L KT IL +H++ I+ D VVV++KG+ + G+ +
Sbjct: 174 KTDLL-RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 52/235 (22%), Positives = 102/235 (43%), Gaps = 28/235 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +++ R L I+F IE G G++G GAGK++ L + L G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCH 1333
V G N++ P ++R + +P+ + + L + +
Sbjct: 74 VFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------EEM 126
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V+ E GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A ++
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 1394 NAISSECK-GMTVITIAHRISTVLNMDE-------ILILDHGHLVEQGNPQTLLQ 1440
+ + G+T++ +H NM E I ++ +G +VE G + L +
Sbjct: 187 KILKQASQEGLTILVSSH------NMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 41/221 (18%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 669 SIAYVPQVP---WILSGTIRDNILF-GKNYD------PQSYSETLKACTLDVDISLMVGG 718
I+Y+P+ + G + + F Y + + L
Sbjct: 89 LISYLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIAGLG--------- 137
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
I ++ S G +L +ARA+ + +LD+ S +D AR + +
Sbjct: 138 --EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQ 194
Query: 779 LQKTRILCTHN---VQAISAADMVVVMDKGQVKWIGSSADL 816
T ++ +HN V+ + D + ++ G + G+ +L
Sbjct: 195 EGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 19/218 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +++++ Y L I TIE G V G G GK+++L + G+I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+G+ I ++G+ +P+ + S+ D L L V + + +
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLK-AVA--SLYGVKVNKN-EIMDA 118
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
+E+V + K+ G S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 119 LESVEVLDLKKKLG-ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 1398 SECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQG 1433
K G+ +I+ +S D L
Sbjct: 178 EILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 29/202 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 671
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 672 YVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
++P+ + ++ D + G + + L++ + D+ +G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DLKKKLG-------- 132
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
LS G R+ LA + ++IY+LDD + A+D +L +I+ + I+
Sbjct: 133 ---ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVII 188
Query: 786 CTHNVQAISAADMVVVMDKGQV 807
+ + D+ + K
Sbjct: 189 SSREELSY--CDVNENLHKYST 208
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 7e-27
Identities = 46/249 (18%), Positives = 89/249 (35%), Gaps = 52/249 (20%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 56
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE------- 1330
G + L A + Q PF V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTP----------PFAT-------PVWHYLTLHQH 99
Query: 1331 ----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL-------KSSKVLCLDE 1379
+ + A+ L+ + S S G+ Q + LA +L + ++L LDE
Sbjct: 100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159
Query: 1380 CTANVD-AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVEQG 1433
++D AQ +++ + + +G+ ++ +H LN +L G ++ G
Sbjct: 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHD----LNHTLRHAHRAWLLKGGKMLASG 215
Query: 1434 NPQTLLQDE 1442
+ +L
Sbjct: 216 RREEVLTPP 224
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 47/223 (21%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L +S + G ++ ++G G+GKS+LL + G GSI +G
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
AY+ Q + + ++ + ++ A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLG 121
Query: 726 KGVN-LSGGQRARLALARA-------VYHGSDIYMLDDVLSAVD----AQVARWILSNAI 773
+ N LSGG+ R+ LA + +LD+ ++++D + + + + + +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 774 MGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 815
G ++ +H++ + A ++ G++ G +
Sbjct: 182 QG-----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 47/240 (19%), Positives = 98/240 (40%), Gaps = 41/240 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +N+ Y + +NF + G + ++G+ G GKS++L+ L + G+I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------------HMNDDLKIW 1326
++ VPQ + + H+N
Sbjct: 63 ------------EVYQSIGFVPQFF--------SSPFAYSVLDIVLMGRSTHIN-TFAKP 101
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ + ++ + L + + S GQRQLI +ARA+ K++ LDE T+ +D
Sbjct: 102 KSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1386 AQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
I+ + + ++ + MTV+ H+ + V+ + ++ L+L+ + G + +L E
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ-NFKFGETRNILTSE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-21
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP- 677
+N + Q++ L KG ++AV+G+ G GKS+LL+ +LG G I SI +VPQ
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFS 76
Query: 678 WILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISL----MVGGDMAYIGEKGVN-LS 731
+ ++ D +L G++ + K+ D +++ + + ++ ++ LS
Sbjct: 77 SPFAYSVLDIVLMGRS--THINTFAKPKS--HDYQVAMQALDYLN--LTHLAKREFTSLS 130
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV- 790
GGQR + +ARA+ + +LD+ SA+D +LS I T + TH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 791 QAISAADMVVVMDKGQV 807
Q ++ A+ ++++K
Sbjct: 191 QVVAIANKTLLLNKQNF 207
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-22
Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 38/265 (14%)
Query: 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTG 1256
+ S D + +I+ N+T + AL++++ + G G++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 1257 AGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG---RFAVVPQSPFLFEG-SLRD 1312
AGKS+++ + L G +LVDG + +L + ++ Q L ++
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124
Query: 1313 NLD-PFHMNDDLKIWSVLE---KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLIC 1363
N+ P L++ + + K V E + VGL SG GQ+Q +
Sbjct: 125 NVALP------LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG-----GQKQRVA 173
Query: 1364 LARALLKSSKVLCLDECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-D 1419
+ARAL + KVL D+ T+ +D T SIL+ I+ G+T++ I H + V + D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICD 232
Query: 1420 EILILDHGHLVEQG-------NPQT 1437
+ ++ +G L+EQ +P+T
Sbjct: 233 CVAVISNGELIEQDTVSEVFSHPKT 257
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 7e-08
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 669 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 716
I + Q +LS T+ N+ K+ + +E L +V
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS----------LV 151
Query: 717 GGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 770
G +G+K NLSGGQ+ R+A+ARA+ + + D SA+D R IL
Sbjct: 152 G-----LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 771 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
N +G T +L TH + + D V V+ G++ + +++
Sbjct: 207 KDINRRLG-----LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-20
Identities = 39/232 (16%), Positives = 78/232 (33%), Gaps = 19/232 (8%)
Query: 1223 NVTMRYKPSLPAALHDINF-TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
V RYK + T + T +G++G+ G GK+++L L G +
Sbjct: 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NS 58
Query: 1282 LNIINTPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------- 1333
+ ++ RG + + L+ ++ K
Sbjct: 59 KVGKDEVLKRFRGKEIYNYFKELY--SNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 1334 --VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
E E + + + S G Q + +A +LL+ + V D+ ++ +D +
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
+ AI K VI + H + + + D I I+ V ++
Sbjct: 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARV 228
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-19
Identities = 37/210 (17%), Positives = 78/210 (37%), Gaps = 28/210 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L N + G +GI+G G GK++ L G + + +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---------- 332
Query: 1295 RFAVVPQSPFL-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKESGI 1352
+ PQ F ++G+++ L ++ ++ EEV + + L ++ +
Sbjct: 333 --SYKPQRIFPNYDGTVQQYL------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1408
S G+ Q + +A L K + + LD+ ++ +D A ++ + I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFII 442
Query: 1409 AHRISTVLNM-DEILILDHGHLVEQGNPQT 1437
H +S + D I++ G + G +
Sbjct: 443 DHDLSIHDYIADRIIVFK-GEPEKAGLATS 471
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 6e-15
Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 29/205 (14%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 677
+ L + +G ++ ++G G GK++ ++GE+ GS+ ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 678 WI-----LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLS 731
+ + + + + + E K L L+ E V +LS
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH---RLL---------ESNVNDLS 387
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILCT 787
GG+ +L +A + +D+Y+LD S +D VA+ I + +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIID 443
Query: 788 HNVQAISA-ADMVVVMDKGQVKWIG 811
H++ AD ++V KG+ + G
Sbjct: 444 HDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 39/213 (18%)
Query: 623 LNQVSLCLPK-GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGS- 669
L PK +++ V+G+ G GK+++L + GE++ G G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGG-----DM 720
I + + I+ K + S+ LK + +D +M
Sbjct: 74 IYNYFKEL----YSNELKIVH-KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNM 128
Query: 721 AYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ K LSGG RL +A ++ +D+Y+ D S +D + + AI L
Sbjct: 129 TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAI---REL 184
Query: 780 QKTR--ILCTHN---VQAISAADMVVVMDKGQV 807
K + I+ H+ + + D++ ++
Sbjct: 185 LKNKYVIVVDHDLIVLDYL--TDLIHIIYGESS 215
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 90.6 bits (226), Expect = 4e-20
Identities = 54/242 (22%), Positives = 106/242 (43%), Gaps = 33/242 (13%)
Query: 1218 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
++ +N+ + K AL ++ ++ G I+G G+GKS+++N +
Sbjct: 7 ILRTENIVKYFGEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61
Query: 1275 GQILVDGLNIINTPVRDL--RG--R-FAVVPQSPFLFEG-SLRDN-LDPFHMNDDLKIWS 1327
G++ + +I N +L G R F Q+P + ++ +N L + + S
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF----QTPQPLKEMTVLENLLIGEICPGESPLNS 117
Query: 1328 VLEKCHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+ K + +E E + L S GQ +L+ + RAL+ + K++ +
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177
Query: 1378 DECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGN 1434
DE A V A + N + KG+T + I HR+ VLN D + ++ +G ++ +G
Sbjct: 178 DEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
Query: 1435 PQ 1436
+
Sbjct: 237 GE 238
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 52/223 (23%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------- 674
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++ I
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 675 ------QVPWILSG-TIRDNILFGKNYDPQSYSETL--------------KACTL--DVD 711
Q P L T+ +N+L G+ +S +L KA + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+S K LSGGQ + + RA+ + ++D+ ++ V L++
Sbjct: 143 LS-------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG-----LAH 190
Query: 772 AIMGPHMLQKTR------ILCTHNVQAISA-ADMVVVMDKGQV 807
I + + + + ++ H + + D + VM GQ+
Sbjct: 191 DIF--NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 5e-20
Identities = 44/240 (18%), Positives = 80/240 (33%), Gaps = 26/240 (10%)
Query: 1214 PFQGL-------IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1266
PF + +VT RY + + T G +G+VG G GKS+ L L
Sbjct: 66 PFDAIQIINLPTNLEAHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123
Query: 1267 FRLTPICGGQILV-----------DGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL 1314
G+ G + N + L + + ++
Sbjct: 124 AGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183
Query: 1315 DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373
L++ E VK ++ + LE +K S G+ Q + + ++ +
Sbjct: 184 VQKVGELLKLRMEKSPED--VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241
Query: 1374 VLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVE 1431
V DE ++ +D + I S VI + H +S + + D + I+ V
Sbjct: 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 5e-19
Identities = 31/214 (14%), Positives = 70/214 (32%), Gaps = 31/214 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L+ + ++G G GK++++ L GQ + V
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQ 420
Query: 1295 RFAVVPQSPF--LFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1352
+ A LF +R D+ V+ + ++ + +
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV--------------VKPLRIDDIIDQEVQ 466
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1408
S G+ Q + + AL + + +DE +A +D + +++ I T +
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIV 524
Query: 1409 AHRISTVLNM-DEILILDHGHLVE--QGNPQTLL 1439
H + D++++ + P++LL
Sbjct: 525 EHDFIMATYLADKVIVFEGIPSKNAHARAPESLL 558
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-18
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW- 678
+ VLN ++ ++GE G+GK++L+ + G + G +++ PQ
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 679 --------ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 729
+ IR L +PQ ++ +K +D ++ ++ V +
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVVKPLRID---DII---------DQEVQH 467
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 788
LSGG+ R+A+ A+ +DIY++D+ + +D++ R I S I + +KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-RIICSKVIRRFILHNKKTAFIVEH 526
Query: 789 NVQAISA-ADMVVVMDKGQVK 808
+ + AD V+V + K
Sbjct: 527 DFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 58/230 (25%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------- 669
N G ++ ++G G GKS+ L + G+ G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 670 ----------------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 707
YV +P + G ++ + + E +K
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ-KVGELLKLRMEKSPEDVKRYI 206
Query: 708 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQ 763
+ + ++ I + LSGG+ R A+ + +D+YM D+ S +D
Sbjct: 207 KILQLENVLK---RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 764 VARWILSNAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVMDKGQV 807
A+ I S L K I H+ + + +D V ++
Sbjct: 260 AAQIIRS--------LLAPTKYVICVEHDLSVLDYL--SDFVCIIYGVPS 299
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 1e-18
Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 27/226 (11%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----GQ 1276
+ RY + L+ + ++ G VGIVG G GKS+ + L +L P
Sbjct: 26 DCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1277 ILVDGLNIINTPVRDLR---GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVL 1329
++ + G V + ++ +L P + + LK
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-------DLIPKAVKGKVIELLKKADET 136
Query: 1330 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
K ++E V+A+ LE ++ S G+ Q + +A ALL+++ DE ++ +D +
Sbjct: 137 GK--LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 1390 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
AI +G +V+ + H ++ + + D I ++ +G G
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 38/208 (18%), Positives = 76/208 (36%), Gaps = 34/208 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L I+ G +GIVG G GK++ + L + G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHVKEEV-EAVGLETFVKES 1350
V + ++ D +L S L K E+ + +G+
Sbjct: 348 --TVAYKPQYIK-------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1406
S G+ Q + +A LL+ + + LDE +A +D + +++ + T +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTAL 456
Query: 1407 TIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ H + + + D +++ + G + G
Sbjct: 457 VVEHDVLMIDYVSDRLMVFE-GEPGKYG 483
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-15
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 675
+ L + KG ++ ++G G GK++ + + G T G I ++AY PQ
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 676 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 729
V +LS + +E LK + L ++ V
Sbjct: 359 DYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGII---DLY---------DREVNE 401
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRIL 785
LSGG+ R+A+A + +DIY+LD+ + +D V+R + + + +KT ++
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEK---NEKTALV 457
Query: 786 CTHNVQAISA-ADMVVVMDKGQVK 808
H+V I +D ++V + K
Sbjct: 458 VEHDVLMIDYVSDRLMVFEGEPGK 481
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
N + + +G +V ++G G+GKS+ + + G+++ + S
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92
Query: 669 ------------SIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
I V + +P + G + + + K + E +K +
Sbjct: 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVK----AL 146
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
++ ++ I LSGG+ R+A+A A+ + Y D+ S +D +
Sbjct: 147 ELENVLE---REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA- 198
Query: 771 NAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVM 802
AI L K+ ++ H+ + + +D++ V+
Sbjct: 199 RAI---RRLSEEGKSVLVVEHDLAVLDYL--SDIIHVV 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 84.8 bits (211), Expect = 3e-18
Identities = 58/256 (22%), Positives = 114/256 (44%), Gaps = 62/256 (24%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1278 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ +G +I N P + A+VP+ +F ++ +NL + ++ +K +K
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL-------MMGAYNRKDKEGIK 116
Query: 1336 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1381
++E + F +KE SG G++Q++ + RAL+ K+L +DE +
Sbjct: 117 RDLEWI-FSLFPRLKERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDEPSLGL 170
Query: 1382 ------------ANVDAQTASIL---QNAISSECKGMTVITIAHRISTVLNMDEILILDH 1426
++ + +IL QNA+ + + +AH +L+
Sbjct: 171 APILVSEVFEVIQKINQEGTTILLVEQNALGA-------LKVAHY---------GYVLET 214
Query: 1427 GHLVEQGNPQTLLQDE 1442
G +V +G LL +E
Sbjct: 215 GQIVLEGKASELLDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 51/227 (22%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+ + L +P+G +V +IG G+GK++ L++I G + G I +G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 670 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY---- 722
IA VP+ I T+ +N++ G +Y+ K + D+ + +
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMG------AYNRKDKE-GIKRDL------EWIFSLFP 127
Query: 723 -----IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAI 773
+ + G LSGG++ LA+ RA+ + M+D+ L+ + ++V I
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 774 MGPHML---QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817
G +L Q A+ A V++ GQ+ G +++L
Sbjct: 188 EGTTILLVEQNAL-------GALKVAHYGYVLETGQIVLEGKASELL 227
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 5e-18
Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 27/227 (11%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----G 1275
++ RY + A + ++ G VGIVG G GK++ + L +L P
Sbjct: 95 EDCVHRYGVN--AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1276 QILVDGLNI--INTPVRDLR-GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSV 1328
++ + L+ G V + ++ +L P + + LK
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDE 205
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
+ K +E V+ + LE + S G+ Q + +A ALL+ + DE ++ +D +
Sbjct: 206 VGK--FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 1389 ASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+ I +G V+ + H ++ + + D I ++ +G G
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYG 309
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 37/225 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E+ + Y L I G +GIVG G GK++ + L + G++
Sbjct: 357 LVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHV 1334
D V + ++ + +L S L
Sbjct: 414 EWDL---------------TVAYKPQYI-------KAEYEGTVYELLSKIDSSKLNSNFY 451
Query: 1335 KEEV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1389
K E+ + +G+ + S G+ Q + +A LL+ + + LDE +A +D +
Sbjct: 452 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQG 1433
+++ + T + + H + + + D +++ + G G
Sbjct: 512 RAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 2e-15
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 675
+ L + KG ++ ++G G GK++ + + G T G + ++AY PQ
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428
Query: 676 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730
V +LS + +E LK + V +L
Sbjct: 429 EYEGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDLYDRNVE-----------DL 472
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILC 786
SGG+ R+A+A + +DIY+LD+ + +D V+R I +KT ++
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVV 528
Query: 787 THNVQAISA-ADMVVVMDKGQVKWIG 811
H+V I +D ++V + G+ G
Sbjct: 529 EHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----------- 667
N + + G +V ++G G+GK++ + + G+++ + S
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 668 -----------GSIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
G I V + +P + G +R+ L K + + E +K ++
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVK----EL 216
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754
++ ++ + + LSGG+ R+A+A A+ + Y D
Sbjct: 217 ELENVLD---RELHQ----LSGGELQRVAIAAALLRKAHFYFFD 253
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 57/231 (24%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
VLN +SL L G ++ +IG G GK++LL + G G I SG
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 669 ---SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG- 717
+ Y+ Q G T+ NI +G ++ + ++ L + G
Sbjct: 78 RERRLGYLVQ-----EGVLFPHLTVYRNIAYGLGNGKGRTAQERQR----IEAMLELTGI 128
Query: 718 GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSN 771
++A Y E LSGGQ+ R ALARA+ ++ +LD+ SA+D Q+ +++
Sbjct: 129 SELAGRYPHE----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA- 183
Query: 772 AIMGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 816
+ + + +H+ + A+ AD + VM +G++ S +L
Sbjct: 184 -------ALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 4e-13
Identities = 48/259 (18%), Positives = 98/259 (37%), Gaps = 74/259 (28%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ +++ ++ + L+DI+ +++ G + I+G +G GK+++L L G+I
Sbjct: 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1278 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1330
+ G I + +L R + Q LF P H+ +V
Sbjct: 62 SLSG-KTIFSKNTNLPVRERRLGYLVQEGVLF---------P-HL-------TVYRNIAY 103
Query: 1331 ------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSK 1373
+ ++ +E G+ SG GQ+Q LARAL +
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPDPE 158
Query: 1374 VLCLDECTANVDAQ--------TASILQNAISSECKGMTVITIAH------RISTVLNMD 1419
++ LDE + +D Q + L+ G + + ++H + + D
Sbjct: 159 LILLDEPFSALDEQLRRQIREDMIAALRAN------GKSAVFVSHDREEALQYA-----D 207
Query: 1420 EILILDHGHLVEQGNPQTL 1438
I ++ G +++ +P L
Sbjct: 208 RIAVMKQGRILQTASPHEL 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 53/229 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--- 674
+ VS + +G +V ++G GSGK+++L I G T G + G + +P
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 675 -QVPWILSG------------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GD 719
V G T+ DN+ FG E V L +
Sbjct: 87 RNV-----GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR----VRELLRFMRLES 137
Query: 720 MA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSNAI 773
A + E LSGGQ+ R+ALARA+ + + D+ +A+D Q+ ++
Sbjct: 138 YANRFPHE----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ--- 190
Query: 774 MGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 816
+ T + TH+ Q A+ AD V+V+ +G V+ G+ ++
Sbjct: 191 -----VHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-15
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 41/240 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF V Y + + ++F I G VG++G +G+GK++IL + L G +
Sbjct: 15 IEFVGVEKIYPGGARS-VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-------- 1330
+ G + + P + R +V Q+ LF HM V +
Sbjct: 74 IGGKRVTDLPPQK-RN-VGLVFQNYALF---------Q-HMT-------VYDNVSFGLRE 114
Query: 1331 --------KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
V+E + + LE++ S GQ+Q + LARAL +VL DE A
Sbjct: 115 KRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 1383 NVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQ-GNPQTL 1438
+D Q L+ + + G+T + + H L + D +L+L G+ VEQ G P+ +
Sbjct: 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGN-VEQFGTPEEV 233
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 58/241 (24%), Positives = 109/241 (45%), Gaps = 46/241 (19%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1278 LVDGLNIINTPV--RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1329
L+DG ++ + D+ A V Q+ LF P HMN + +++ +
Sbjct: 58 LLDGKDVTDLSPEKHDI----AFVYQNYSLF---------P-HMNVKKNLEFGMRMKKIK 103
Query: 1330 EKCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ V + + +E + SG G++Q + LARAL+ + K+L LDE + +
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG-----GEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 1385 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1437
D +T + +TV+ I H + M D I ++ G L++ G P+
Sbjct: 159 DPRTQENARE----MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEE 214
Query: 1438 L 1438
+
Sbjct: 215 I 215
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 9e-12
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPW 678
N L+ +SL + G ++G G+GK+ L I G + G I G + + P
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PE 70
Query: 679 ---ILSG------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVG-G 718
I ++ N+ FG K DP+ +T + +
Sbjct: 71 KHDI--AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR----------DLKIE 118
Query: 719 DMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + +
Sbjct: 119 HLLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLS-- 171
Query: 777 HMLQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
+L K T + TH+ +A AD + V+ G++ +G ++
Sbjct: 172 -VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 52/249 (20%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I+ + + L IN I G V ++G +G+GKS+ L L L G+I
Sbjct: 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1278 LVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC--- 1332
++DG+N+ T + +R +V Q F NL P HM +VL
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQR-F--------NLFP-HM-------TVLNNITLA 124
Query: 1333 --HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
V +E+ EA VGL+ S S GQ Q + +ARAL K++ D
Sbjct: 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 1379 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNM-------DEILILDHGHLV 1430
E T+ +D + +L +GMT++ + H M D +L +D G+++
Sbjct: 185 EPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE------MGFAREVGDRVLFMDGGYII 238
Query: 1431 EQGNPQTLL 1439
E+G P+ L
Sbjct: 239 EEGKPEDLF 247
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 4e-13
Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 29/227 (12%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQ-VGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
R +N E G ++G TGAGKS L + + G++ ++G
Sbjct: 6 RAEKRLGN------FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-KCHV 1334
+I P RG VPQ LF P H++ + L+ +E V
Sbjct: 60 ADITPLPPER-RG-IGFVPQDYALF---------P-HLSVYRNIAYGLRNVERVERDRRV 107
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E E +G+ + S G+RQ + LARAL+ ++L LDE + VD +T +L
Sbjct: 108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 1395 AISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTL 1438
+ + + ++ + H + + DE+ ++ +G +VE+G + L
Sbjct: 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------IAYVPQ---- 675
++G G+GKS L I G + G + +G+ I +VPQ
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 676 VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVG-GDMA--YIGEKGVNLS 731
P + ++ NI +G +N + ++ + +G + LS
Sbjct: 82 FPHL---SVYRNIAYGLRNVERVERDRRVRE-MAE-----KLGIAHLLDRKPAR----LS 128
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCT 787
GG+R R+ALARA+ + +LD+ LSAVD + + +L + +Q+ + T
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKT-KGVLMEELR---FVQREFDVPILHVT 184
Query: 788 HN-VQAISAADMVVVMDKGQVKWIGSSADL 816
H+ ++A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 58/249 (23%), Positives = 115/249 (46%), Gaps = 37/249 (14%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1279 VDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV 1328
D + + + R +V Q+ L+ P ++ ++ L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRK-IGMVFQTWALY---------P-NLTAFENIAFPLTNMKM 112
Query: 1329 ----LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ K V+E + + + + S Q+Q + LARAL+K +L LDE +N+
Sbjct: 113 SKEEIRK-RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1385 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQT 1437
DA+ ++++ + K G+T++ ++H + + + D + +L G LV+ G P+
Sbjct: 172 DAR----MRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPED 227
Query: 1438 LLQDECSVF 1446
L + S+
Sbjct: 228 LYDNPVSIQ 236
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 600 MA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658
M +I+++ + + V L+ V++ + G ++G G+GK++ + I G +
Sbjct: 1 MVRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
Query: 659 LTHGSIHASGS----------------IAYV-------PQVPWILSGTIRDNILFG---K 692
+ G ++ I V P + T +NI F
Sbjct: 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL------TAFENIAFPLTNM 110
Query: 693 NYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 750
+ + ++ A LD+ + LSG Q+ R+ALARA+ +
Sbjct: 111 KMSKEEIRKRVEEVAKILDIH---------HVLNHFPRELSGAQQQRVALARALVKDPSL 161
Query: 751 YMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHN-VQAISAADMVVVMDKGQVK 808
+LD+ S +DA++ R + L T ++ +H+ + AD V V+ KG++
Sbjct: 162 LLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
Query: 809 WIGSSADL 816
+G DL
Sbjct: 221 QVGKPEDL 228
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-11
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 21/291 (7%)
Query: 501 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 560
+ S + L+ + A + ++ + L A+
Sbjct: 333 AIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADL---IDERIIDQQAWF 389
Query: 561 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 620
+ + E K + + N N D +D + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
++ L L + + G G GKS+L+ +I + YV
Sbjct: 450 LLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANGQ-VDGFPTQEECRTVYVEHDIDGT 507
Query: 681 SG--TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738
++ D + ++ + L G I LSGG + +L
Sbjct: 508 HSDTSVLDFVFESGVGTKEAIKDKLIE----------FGFTDEMIAMPISALSGGWKMKL 557
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
ALARAV +DI +LD+ + +D W L N + T I +H+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAW-LVNYLNT---CGITSITISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 59/230 (25%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L+ ++ + GI G G GKS+++ A I GQ VDG R
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRA------IANGQ--VDGFPTQE------ECR 496
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH---------VKEEVEAVGL--E 1344
V SVL+ +K+++ G E
Sbjct: 497 TVYVEHDIDGTHSDT----------------SVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1345 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C T
Sbjct: 541 MIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGI-T 597
Query: 1405 VITIAHRISTVLN--MDEILILDHGHLVE-QGNPQTLLQDECSVFSSFVR 1451
ITI+H S L+ + I+ + L + +GN F+ FV+
Sbjct: 598 SITISH-DSVFLDNVCEYIINYEGLKLRKYKGN-----------FTEFVK 635
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1173 GNFLSSFTETEKEMVSLERV----LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY 1228
GN + F + + E + LE+ L G ++ + +++ N+ +Y
Sbjct: 628 GN-FTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ-----KAIVKVTNMEFQY 681
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ + DINF +++ ++G GAGKS+++N L G++
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 675
+ ++ S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR- 1411
S GQ+ + LA + ++ LDE T +D + L A+ +G VI I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EG-GVIIITHSA 958
Query: 1412 --ISTVLNMDEILILDHGHLVE-QGN 1434
+ +E+ + G + N
Sbjct: 959 EFTKNL--TEEVWAVKDGRMTPSGHN 982
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGGQ+ +L LA + + +LD+ + +D LS A+ + I+ TH
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA-LSKALKE---FEGGVIIITH 956
Query: 789 NVQAISA-ADMVVVMDKGQVK 808
+ + + V + G++
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMT 977
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 61/275 (22%), Positives = 98/275 (35%), Gaps = 92/275 (33%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1278 LVDGLNIINTP-------------VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1324
+V+G NI +R LR R +V Q F NL HM
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-F--------NLWS-HM----- 108
Query: 1325 IWSVLEKC-----HV----KEEVEA--------VGLETFVKE------SGISFSVGQRQL 1361
+VLE V K + VG++ + SG GQ+Q
Sbjct: 109 --TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG-----GQQQR 161
Query: 1362 ICLARALLKSSKVLCLDECTANVD--------------AQTASILQNAISSECKGMTVIT 1407
+ +ARAL VL DE T+ +D A+ G T++
Sbjct: 162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-------------GKTMVV 208
Query: 1408 IAHRIS---TVLNMDEILILDHGHLVEQGNPQTLL 1439
+ H + V ++ L G + E+G+P+ +
Sbjct: 209 VTHEMGFARHV--SSHVIFLHQGKIEEEGDPEQVF 241
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 48/247 (19%), Positives = 92/247 (37%), Gaps = 62/247 (25%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQ 1276
++ +N+ + L I+ +++ G V I+G +G+GKS++L L L P G+
Sbjct: 4 ILRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGK 60
Query: 1277 ILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1330
+ ++G + T ++L + V Q ++ +L + LE
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQF--------------HYLIPEL---TALENV 103
Query: 1331 --------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKS 1371
K + + +GL + SG G++Q + +ARAL
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG-----GEQQRVAIARALANE 158
Query: 1372 SKVLCLDECTANVDAQTA----SILQ--NAISSECKGMTVITIAHRISTVLNMDEILILD 1425
+L DE T N+D+ I N G +++ + H L +
Sbjct: 159 PILLFADEPTGNLDSANTKRVMDIFLKINE-----GGTSIVMVTHERELAELTHRTLEMK 213
Query: 1426 HGHLVEQ 1432
G +V +
Sbjct: 214 DGKVVGE 220
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+L +SL + KG V++IG GSGKS+LL ILG
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG 51
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 1218 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG 1274
+++ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L P
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TE 59
Query: 1275 GQILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKI 1325
G++ +D + + +L R + V Q P L + +N++ P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAM 116
Query: 1326 WSVLEKCHVKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDE 1379
+ E ++ LE SG GQ+Q + +ARAL + ++ D+
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSG-----GQQQRVAIARALANNPPIILADQ 171
Query: 1380 CTANVDAQTA----SILQNAISSECKGMTVITIAH 1410
T +D++T +L+ ++ E G TV+ + H
Sbjct: 172 PTWALDSKTGEKIMQLLKK-LNEE-DGKTVVVVTH 204
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
EE L V+L + +G V+++G GSGKS++LN I+G
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG 52
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-09
Identities = 87/581 (14%), Positives = 174/581 (29%), Gaps = 144/581 (24%)
Query: 568 FLGCSEYKHELEQ-AANSPSYIS--NGLSNFNS--KDMAVIMQDATCSWYCNNEEEQNVV 622
FL S K E Q + + YI + L N N V + + +
Sbjct: 93 FL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV------------SRLQPYLK 139
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 682
L Q L L V + G +GSGK+ + + L++ ++ W+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDF-----KIFWL--- 187
Query: 683 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742
N P++ E L+ +D + D + + ++ S R L
Sbjct: 188 ----N--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKS 240
Query: 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAI-MGPHMLQKTR------ILCTHNVQAISA 795
Y + +L +V +A NA + +L TR L IS
Sbjct: 241 KPYENCLL-VLLNVQNA-------KAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 796 ADMVVVMDKGQV-----KWIGSSAD-----------LAVSLYSGFWS--TNEFDTSLHMQ 837
+ + +V K++ +S+ + +D H+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 838 KQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 897
++ T ++ S + E E + + L+V+ A I
Sbjct: 352 CDKLTT---------------IIESSLNVLEPAEYRKMFD---RLSVFPPSAH-----IP 388
Query: 898 L-VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRA 956
++ L +W S +V L +
Sbjct: 389 TILLSL-------------IW----------FDVIKSDVMVVVNKLH----KYSLVEKQP 421
Query: 957 FSFAFGSLRAAVKVHN---TLLTKIVNAPVLFFDQTPGGRILNRFS-SDLYMIDDSLPFI 1012
+ + L K+ N L I++ ++ + DD +P
Sbjct: 422 KESTIS-------IPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 1013 LNILLANFVG--LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSR 1070
L+ + +G L I F ++ + F F+ K++ + + L+++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1071 SPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS 1111
Y + N R + F+ K +E+++ + T
Sbjct: 527 LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 68/403 (16%), Positives = 132/403 (32%), Gaps = 120/403 (29%)
Query: 192 VDGDVEEDCNTDSSYWDLM-----AF-KSID----SVMNRGVIKQLDFEDLLGLPTDMDP 241
+D + E Y D++ AF + D M + ++ + + + ++ +
Sbjct: 7 MDFETGE---HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 242 S-----TCHSK-------------------LLSCWQAQRSCNCTNPSLVRAICCAYGYPY 277
+ T SK L+S + + PS++ + Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTRM-------Y 112
Query: 278 I-CLGLLKVVNDSIGFAG-----PLLLNKLIKFLQQ-------------GSGHLDGYVLA 318
I ++ ND+ FA KL + L + GSG +A
Sbjct: 113 IEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVA 167
Query: 319 IALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII-YQKCLYVRL----AERSEFSDGE 373
+ + L+ ++ D F + L LK +S T++ + L ++ RS+ S
Sbjct: 168 LDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 374 IQTFMSVDTDRTVNLANSFH--------DAWSL----PFQIGVALYLLYTQVK--FAFVS 419
S+ + L + + + + F + + LL T+ K F+S
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLS 282
Query: 420 GLAITILLIPVNKWIANLIANATE----KMMKQKDERIRRTGEIL-THIRTLKMYG---- 470
T I ++ L + + K + + + + R E+L T+ R L +
Sbjct: 283 AATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIR 338
Query: 471 --------WEQIFSSWLMKTRSSEVKHLST---RKYLDAWCVF 502
W+ + L S + L RK D VF
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 4e-04
Identities = 88/552 (15%), Positives = 154/552 (27%), Gaps = 178/552 (32%)
Query: 745 YHGSDI--YMLDDVLSAVDAQ----VARWILSNA-----IMGPHMLQKTR----ILCTHN 789
Y DI D + D + + + ILS IM + T L +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 790 VQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN 849
+ + V + + K++ S T + S+ + + + +
Sbjct: 76 EEMV--QKFVEEVLRINYKFLMSP-----------IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 850 KQILLQEKDVVSVSDDAQEIIEV--EQRKEGRVELTVY--KNYAKFSGWFITLVICLSAI 905
Q+ K VS ++ + E R V + K ++ L +CLS
Sbjct: 123 NQVF--AKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGK---TWVALDVCLSYK 175
Query: 906 LMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 965
+ Q + WL+ +
Sbjct: 176 V-QCKMDFKIFWLN-----------------------------------------LKNCN 193
Query: 966 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLG 1025
+ T+L + L + P + SS++ + S+ L LL +
Sbjct: 194 SP----ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------ 240
Query: 1026 IAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1085
Y LLV L +V + + +F N S
Sbjct: 241 ----KPYENC----LLV----------------------LLNVQNAKAWNAF----NLSC 266
Query: 1086 TI----RAFKSEDYFMAKFKEHVVL--YQRTSYSELTASL---WLSLRLQLLAA------ 1130
I R + D+ A H+ L + T + SL +L R Q L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1131 -FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETE-KEM-V 1187
+S IA G AT+ + +++ + L+ E ++M
Sbjct: 327 PRRLSIIAESIRDG-----LATWDN-----WKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 1188 SL----------ERVLE-------YMDVPQ--EELCGYQSLSPDWPFQGLIEFQNVTMRY 1228
L +L DV +L Y SL P + I ++ +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLEL 435
Query: 1229 KPSLP--AALHD 1238
K L ALH
Sbjct: 436 KVKLENEYALHR 447
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 4e-09
Identities = 57/257 (22%), Positives = 113/257 (43%), Gaps = 60/257 (23%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ +N+ ++ + A L++IN I+ G + ++G +G+GKS++L + + G+I
Sbjct: 4 IKLENIVKKF-GNFTA-LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
D ++ P +D R +V Q+ P + ++ N + L++ + +
Sbjct: 62 FDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKN-----IAFPLEL-RKAPREEI 110
Query: 1335 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
++V V ++ + SG GQ+Q + +ARAL+K +VL LDE +N+D
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1386 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1429
A L+ + +E K G+T + +A R I ++ G +
Sbjct: 166 AL----LRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR---------IAVIREGEI 212
Query: 1430 VEQGNPQTLLQDECSVF 1446
++ G P + F
Sbjct: 213 LQVGTPDEVYYKPKYKF 229
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
LN ++L + G +A++G GSGKS+LL +I G T G I+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76
Query: 670 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
+ V P + T+ NI F + + + ++ A L +D
Sbjct: 77 VGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID------ 124
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 769
+ LSGGQ+ R+A+ARA+ ++ +LD+ LS +DA ++ R L
Sbjct: 125 ---KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--L 179
Query: 770 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T + TH+ +A++ AD + V+ +G++ +G+ ++
Sbjct: 180 Q------KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 62/258 (24%), Positives = 114/258 (44%), Gaps = 62/258 (24%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T R+ + A ++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 12 VKLENLTKRF-GNFTA-VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
++ P +D R ++V QS P + ++ +N + LKI K +
Sbjct: 70 FGDRDVTYLPPKD-RN-ISMVFQSYAVWPHM---TVYEN-----IAFPLKI-KKFPKDEI 118
Query: 1335 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ V +E + + SG GQRQ + +ARA++ VL +DE +N+D
Sbjct: 119 DKRVRWAAELLQIEELLNRYPAQLSG-----GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1386 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1429
A+ L+ A+ +E K +T I T+ R I +++ G
Sbjct: 174 AK----LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---------IAVMNRGQ- 219
Query: 1430 VEQ-GNPQTLLQDECSVF 1446
+ Q G+P + SVF
Sbjct: 220 LLQIGSPTEVYLRPNSVF 237
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 62/257 (24%)
Query: 593 SNFNSKDMA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 651
+N M V +++ T + +N+++L + G + ++G G GK++ L
Sbjct: 2 NNIEVIKMVEVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 55
Query: 652 SILGEMMLTHGSIHASGS-----------IAYV-------PQVPWILSGTIRDNILFG-- 691
I G T G I+ I+ V P + T+ +NI F
Sbjct: 56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM------TVYENIAFPLK 109
Query: 692 -KNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748
K + + ++ A L ++ + LSGGQR R+A+ARA+
Sbjct: 110 IKKFPKDEIDKRVRWAAELLQIE---------ELLNRYPAQLSGGQRQRVAVARAIVVEP 160
Query: 749 DIYMLDDVLSAVDA--------QVARWILSNAIMGPHMLQKTRILCTHN-VQAISAADMV 799
D+ ++D+ LS +DA ++ + L L+ T I TH+ V+A++ D +
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKK--LQ------QKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 800 VVMDKGQVKWIGSSADL 816
VM++GQ+ IGS ++
Sbjct: 213 AVMNRGQLLQIGSPTEV 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 62/258 (24%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I N+ + A+ ++F ++ G V ++G +G GK++ L L + G+I
Sbjct: 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
D + + + P + R +V Q+ P + ++ +N + L+ + K V
Sbjct: 62 FDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFEN-----IAFPLRA-RRISKDEV 110
Query: 1335 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
++ V + ++ + SG GQ+Q + LARAL+K KVL DE +N+D
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPTQLSG-----GQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 1386 AQTASILQNAISSECK------GMTVI----------TIAHRISTVLNMDEILILDHGHL 1429
A L+ + +E K G+T + T+A R I + + G
Sbjct: 166 AN----LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR---------IAVFNQGK- 211
Query: 1430 VEQ-GNPQTLLQDECSVF 1446
+ Q G P + ++F
Sbjct: 212 LVQYGTPDEVYDSPKNMF 229
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 55/228 (24%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
++ VS + G VA++G G GK++ L + G T G I+
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 670 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
+ V P + T+ +NI F + + + A L +D
Sbjct: 77 VGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLID------ 124
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 769
+ K LSGGQ+ R+ALARA+ + + D+ LS +DA ++ L
Sbjct: 125 ---NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--L 179
Query: 770 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T + TH+ +A++ A + V ++G++ G+ ++
Sbjct: 180 Q------QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +V + + A + +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 4 VRLVDVWKVF-GEVTA-VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD------N--LDPFHMN--DD----LK 1324
+ V D V P+ RD + L P HM D+ LK
Sbjct: 62 IGD-----KLVADPEKGIFVPPKD--------RDIAMVFQSYALYP-HMTVYDNIAFPLK 107
Query: 1325 IWSVLEKCHVKEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVL 1375
+ + + + + V V GL + +E SG GQRQ + L RA+++ +V
Sbjct: 108 L-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSG-----GQRQRVALGRAIVRKPQVF 161
Query: 1376 CLDECTANVDA 1386
+DE +N+DA
Sbjct: 162 LMDEPLSNLDA 172
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
+ ++SL + G + ++G G GK++ L I G + G I+ + P+ +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 681 SG------------------TIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
T+ DNI F + Q + ++ A L +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT------ 130
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 769
+ K LSGGQR R+AL RA+ ++++D+ LS +DA ++ + L
Sbjct: 131 ---ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--L 185
Query: 770 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T I TH+ V+A++ D + VM++G ++ +GS ++
Sbjct: 186 Q------RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 730 LSGGQRA------RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
LSGG+R RLA++ + + +LD+ +D + R ++ +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 307
Query: 784 ILCTHNVQAISAADMVVVMDKG 805
IL +H+ + AAD V+ +
Sbjct: 308 ILVSHDEELKDAADHVIRISLE 329
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 1207 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1266
SL +W G +F T + L + V ++G+ G GKSS +N+L
Sbjct: 2 GSLVREW--VGFQQFPAAT---QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
Query: 1267 -----FRLTPI-------CGGQILVDG--LNIINTP 1288
R++P + G +NII+TP
Sbjct: 57 IGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP 92
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 636 VAVIGEVGSGKSSLLNSILGE 656
V V+G+ G GKSS +NS++GE
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE 59
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
+ V+G++ GKS+ LN+++GE +L + + +
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVL 109
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667
VAV GE GSGKSS +N++ G G+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 19/97 (19%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWILSNAIMGPH-MLQ 780
LSGGQR R+A+ R + +++LD+ LS +DA +++R L H L
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--L-------HKRLG 184
Query: 781 KTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
+T I TH+ V+A++ AD +VV+D G+V +G +L
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ QNVT + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
+ + +TP + RG +V QS P L S+ +N M+ LK+ + +K +
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHL---SVAEN-----MSFGLKL-AGAKKEVI 110
Query: 1335 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ V V L + K SG GQRQ + + R L+ V LDE +N+D
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSG-----GQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1386 A 1386
A
Sbjct: 166 A 166
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 636 VAVIGEVGSGKSSLLNSILGE 656
+ V+G+ G GKSS +NSI+GE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGE 62
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1455 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-73 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-70 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-45 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-65 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-42 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-65 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-62 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-42 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-60 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-54 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-41 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-39 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-26 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-38 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-37 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-30 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-37 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-34 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-34 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-34 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-34 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-33 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-25 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-32 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 9e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-27 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 2e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.002 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 0.002 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 243 bits (621), Expect = 2e-73
Identities = 75/245 (30%), Positives = 132/245 (53%), Gaps = 4/245 (1%)
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
P QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-DPFHMNDDLKIWSVL 1329
+ GQIL+DG NI + LR + +V Q LF ++++N+ D ++
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFS 1447
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+VE G + L+ + +
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247
Query: 1448 SFVRA 1452
Sbjct: 248 HLYSI 252
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 174 bits (442), Expect = 2e-49
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ + +L ++L + KG VA +G G GKS+L+N I +T G I G
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I V Q + S T+++NIL G + E K I + G
Sbjct: 87 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
+GE+GV LSGGQ+ RL++AR + I +LD+ SA+D + I + +
Sbjct: 147 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ--EALDVLSKDR 204
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
T ++ H + I+ AD +VV++ G + G+ +L
Sbjct: 205 TTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 232 bits (593), Expect = 9e-70
Identities = 81/241 (33%), Positives = 131/241 (54%), Gaps = 5/241 (2%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
G +EF+NVT Y AL +IN I G V +VGR+G+GKS+I + + R I G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN--LDPFHMNDDLKIWSVLEKCH 1333
IL+DG ++ + LR + A+V Q+ LF ++ +N +I +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
+ + + GL+T + E+G+ S GQRQ I +ARALL+ S +L LDE T+ +D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
+Q A+ K T + IAHR+ST+ DEI++++ G +VE+G LL + V++ +
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QHGVYAQLHK 249
Query: 1452 A 1452
Sbjct: 250 M 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 161 bits (410), Expect = 3e-45
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 83
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDM 720
+A V Q + + T+ +NI + + Y + E + I+ M G
Sbjct: 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 143
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I A +
Sbjct: 144 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ--AALDELQKN 201
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
+T ++ H + I AD +VV++ G + G+ ++L +Y+
Sbjct: 202 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 219 bits (560), Expect = 2e-65
Identities = 84/239 (35%), Positives = 131/239 (54%), Gaps = 3/239 (1%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1337
+DG ++ LR + VV Q L S+ DN+ + K+ + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1338 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1396 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454
+ CKG TVI IAHR+STV N D I++++ G +VEQG + LL + S++S + +
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 3e-42
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
+ V Q +L+ +I DNI + K IS + G
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M +
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKGR 189
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 825
T I+ H + + AD ++VM+KG++ G +L SLYS +
Sbjct: 190 TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 218 bits (557), Expect = 6e-65
Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 9/252 (3%)
Query: 1208 SLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1266
L+P +GL++FQ+V+ Y L + FT+ G +VG G+GKS++ L
Sbjct: 2 LLTP-LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 1267 FRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLK 1324
L GGQ+L+DG + R L + A V Q P +F SL++N+ +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 1325 IWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
I + K + + G +T V E+G S GQRQ + LARAL++ VL LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 1383 NVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQ 1440
+DA + ++ + S E +V+ I +S V D IL L+ G + E G Q L++
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 240
Query: 1441 DECSVFSSFVRA 1452
+ + + V+A
Sbjct: 241 -KKGCYWAMVQA 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (410), Expect = 3e-45
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+VL ++ L G + A++G GSGKS++ + T G + G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVGGDM 720
+A V Q P + ++++NI +G P + + IS + G
Sbjct: 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
+ E G LSGGQR +ALARA+ + +LDD SA+DA + P
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
++ +L T ++ + AD ++ ++ G ++ G+ L
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 210 bits (537), Expect = 2e-62
Identities = 75/238 (31%), Positives = 127/238 (53%), Gaps = 6/238 (2%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ ++V Y S L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVK 1335
+DG I N + + R + V Q + G++R+NL D +W VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451
A+ S KG T + IAHR+ST+++ D+I ++ G + G L+ +++ +V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 154 bits (391), Expect = 1e-42
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+L +S S++A G G GKS++ + + T G I G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 669 SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I +V Q I++GTIR+N+ +G +Y + + L + M +GE+
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
GV +SGGQR RLA+ARA I MLD+ +++D++ + + M +T ++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA--LDSLMKGRTTLVI 194
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
H + I AD + ++KGQ+ G +L LY+ + S
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 206 bits (525), Expect = 3e-60
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 24/276 (8%)
Query: 1187 VSLERVLEYMDVPQEELCGYQSLSPD----WPFQGLIEFQNVTMRYKPSLPAALHDINFT 1242
+ +E V + + EL S + + F ++ + P L +IN
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1243 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302
IE G + I G TG+GK+S+L + G I GR + Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------GRVSFCSQF 105
Query: 1303 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1360
++ G++++N+ D+ + SV++ C +++++ T + E G++ S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1361 LICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNMD 1419
I LARA+ K + + LD +D T + ++ + T I + ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1420 EILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455
+ILIL G G L S + T
Sbjct: 226 KILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTF 261
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 188 bits (480), Expect = 3e-54
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 682 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
GTI++NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQRAR++LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RAVY +D+Y+LD +D + + + M KTRIL T ++ + AD +++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVF-ESCVCKLMANKTRILVTSKMEHLRKADKILI 229
Query: 802 MDKGQVKWIGSSADL---AVSLYSGFWSTNEFD 831
+ +G + G+ ++L S + FD
Sbjct: 230 LHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 148 bits (376), Expect = 6e-41
Identities = 45/234 (19%), Positives = 92/234 (39%), Gaps = 22/234 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 55
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
G + L A + Q + + H +D + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR------TELLNDV 109
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSS-------KVLCLDECTANVDAQTAS 1390
A+ L+ + S S G+ Q + LA +L+ + ++L LDE ++D S
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
L +S+ +G+ ++ +H ++ L +L G ++ G + +L
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (226), Expect = 5e-21
Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 37/219 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L +S + G ++ ++G G+GKS+LL + G M GSI +G
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
AY+ Q + + ++ + ++ A LD +G
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGR 121
Query: 726 KGVNLSGGQRARLALARAVYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
LSGG+ R+ LA V + +LD+ ++++D + +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQ 180
Query: 779 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
++ +H++ + A ++ G++ G ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 143 bits (361), Expect = 9e-39
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 11/233 (4%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1276 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEK 1331
+LVDG + + R + ++ Q L ++ N+ D+ V +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E + VGL + S GQ+Q + +ARAL + KVL DE T+ +D T
Sbjct: 121 --VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1392 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ + + G+T++ I H + V + D + ++ +G L+EQ +
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 4e-26
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG-GDMA-- 721
I + Q +L S T+ N+ D E + T ++ +VG GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLGDKHDS 136
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
Y LSGGQ+ R+A+ARA+ + + D+ SA+D R IL L
Sbjct: 137 YPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 782 TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T +L TH + D V V+ G++ + +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 139 bits (353), Expect = 7e-38
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 11/229 (4%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I+ +NVT YK AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1276 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1329
++ +D + + +L R + V Q L + +N++ P +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1330 EKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
+ E ++ L E F S GQ+Q + +ARAL + ++ D+ T +D++T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1389 ASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNP 1435
+ + + G TV+ + H I+ + I+ L G + +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (284), Expect = 1e-28
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668
EE L V+L + +G V+++G GSGKS++LN I T G ++
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 669 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
I +V Q ++ T +N+ + + + ++ M
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
+ + K LSGGQ+ R+A+ARA+ + I + D A+D++ I+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811
KT ++ TH++ + ++ + G+V+
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 138 bits (350), Expect = 2e-37
Identities = 50/227 (22%), Positives = 105/227 (46%), Gaps = 10/227 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+ T + ++V QS ++ ++ +N+ + ++ V+
Sbjct: 65 FGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWA 120
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
E + +E + S GQRQ + +ARA++ VL +DE +N+DA+ ++ I
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 1398 SECK--GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ +T I + H + M D I +++ G L++ G+P +
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (293), Expect = 9e-30
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669
+N+++L + G + ++G G GK++ L I G T G I+ +
Sbjct: 20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79
Query: 670 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
I+ V Q + T+ +NI F E K V + + +
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR----VRWAAELLQIEELLNRYPA 135
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGGQR R+A+ARA+ D+ ++D+ LS +DA++ + + L+ T I TH
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 789 NVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ A++ D + VM++GQ+ IGS ++
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 138 bits (350), Expect = 5e-37
Identities = 55/253 (21%), Positives = 108/253 (42%), Gaps = 21/253 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1279 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK 1324
V+G NI +D LR R +V Q L+ ++ +N+ + L
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLG 119
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ + + + VG++ + S GQ+Q + +ARAL VL DE T+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 1384 VDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+D + +L+ +G T++ + H + ++ ++ L G + E+G+P+ + +
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239
Query: 1442 ECSVFS-SFVRAS 1453
S F++ S
Sbjct: 240 PQSPRLQQFLKGS 252
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 4e-25
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 33/226 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
+ VL VSL G ++++IG GSGKS+ L I + G+I +G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 669 ---------------SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVD 711
+ V Q + S T+ +N++ S + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA---LK 131
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
VG D G+ V+LSGGQ+ R+++ARA+ D+ + D+ SA+D ++ +L
Sbjct: 132 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-R 190
Query: 772 AIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+ KT ++ TH + A + V+ + +G+++ G +
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 131 bits (330), Expect = 1e-34
Identities = 50/232 (21%), Positives = 101/232 (43%), Gaps = 12/232 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ +V + A+ +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1278 LVDGLNII----NTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1332
+ + V A+V QS L+ ++ DN+ + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR- 119
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
V+E E +GL + S GQRQ + L RA+++ +V +DE +N+DA+ +
Sbjct: 120 -VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 1393 QNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ + G+T I + H + M D I +++ G L + G+P +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (257), Expect = 6e-25
Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI-------A 671
+ + ++SL + G + ++G G GK++ L I G + G I+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 672 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISLMVGGDMAYI 723
+VP ++ + L+ + + LK + +++ ++G + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG--LTEL 132
Query: 724 GEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+ LSGGQR R+AL RA+ ++++D+ LS +DA++ + + L T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 783 RILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
I TH+ A++ D + VM++G ++ +GS ++
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (329), Expect = 1e-34
Identities = 53/231 (22%), Positives = 105/231 (45%), Gaps = 14/231 (6%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G + +++ R L I+F IE G G++G GAGK++ L + L G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ V G N++ P ++R + +P+ N+ + + ++E
Sbjct: 59 VTVFGKNVVEEP-HEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEE 112
Query: 1337 EVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
VE GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 1393 QNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ + + G+T++ +H + V + D I ++ +G +VE G + L +
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74
Query: 670 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I+Y+P+ + + F + S SE + V+ + + G I ++
Sbjct: 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM----VERATEIAGLGEKIKDR 130
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
S G +L +ARA+ + +LD+ S +D AR + + T ++
Sbjct: 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQEGLTILVS 189
Query: 787 THNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+HN+ D + ++ G + G+ +L
Sbjct: 190 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 131 bits (330), Expect = 1e-34
Identities = 49/239 (20%), Positives = 105/239 (43%), Gaps = 17/239 (7%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ +N+ + AL ++ ++ G I+G G+GKS+++N + G++
Sbjct: 4 ILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1278 LVDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNL-------DPFHMNDDLKIWSV 1328
+ +I N +L Q+P + ++ +NL +N +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1329 LEKCHVKEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
++ + E+ E + L S GQ +L+ + RAL+ + K++ +DE A V
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1385 DAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
A + N + KG+T + I HR+ VLN D + ++ +G ++ +G + +++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 3e-26
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 669 ---SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL---------KACTLDVDISLM 715
I Q P L T+ +N+L G+ +S +L + L
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
K LSGGQ + + RA+ + ++D+ ++ V +A I N ++
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLE 195
Query: 776 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLAVSLYS 822
T ++ H + ++ D + VM GQ+ G + ++ S
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 130 bits (327), Expect = 3e-34
Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1278 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ +G +I N P + A+VP+ +F ++ +NL N K +++
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEW 121
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
L+ +K+ G + S G++Q++ + RAL+ K+L +DE + + S +
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 1396 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQDE 1442
I + G T++ + L + +L+ G +V +G LL +E
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 102 bits (256), Expect = 7e-25
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------- 664
+ + L +P+G +V +IG G+GK++ L++I G + G I
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 665 HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+ G T+ +N++ G I + +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----EWIFSLFPRLKERLK 134
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
+ G LSGG++ LA+ RA+ + M+D+ + + + I + T +
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV-FEVIQKINQEGTTIL 193
Query: 785 LCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L N A+ A V++ GQ+ G +++L
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 127 bits (320), Expect = 2e-33
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 10/227 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ QNVT + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+ + +TP +V QS L+ S+ +N+ K + ++ V +
Sbjct: 59 IGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--VNQV 114
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
E + L + + S GQRQ + + R L+ V LDE +N+DA ++ IS
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 1398 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ G T+I + H + + D+I++LD G + + G P L
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
+ VV ++L + +G V +G G GKS+LL I G +T G +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 669 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ V Q + ++ +N+ FG + ++ +
Sbjct: 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 130
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQR R+A+ R + +++LD+ LS +DA + + L +T I
Sbjct: 131 ---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 787 THNV-QAISAADMVVVMDKGQVKWIGSSADL 816
TH+ +A++ AD +VV+D G+V +G +L
Sbjct: 188 THDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 124 bits (311), Expect = 2e-32
Identities = 54/227 (23%), Positives = 110/227 (48%), Gaps = 12/227 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
L+DG T + + A V Q+ LF ++ +++ + + V +
Sbjct: 58 LLDG--KDVTDLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDT 111
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
+ +E + + ++ S G++Q + LARAL+ + K+L LDE + +D +T + +S
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 1398 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ +TV+ I H + M D I ++ G L++ G P+ + +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
N L+ +SL + G ++G G+GK+ L I G + G I G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 669 SIAYVPQVPWILSG-TIRDNILF----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
IA+V Q + ++ N+ F K DP+ +T + + +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLL 121
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + + T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 784 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ TH+ A AD + V+ G++ +G ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 119 bits (300), Expect = 1e-30
Identities = 54/231 (23%), Positives = 108/231 (46%), Gaps = 9/231 (3%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1278 LVDGLNIINTPVRDLRGRF---AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1333
D + + + +V Q+ L+ + +N+ N + + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-- 120
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V+E + + + + S Q+Q + LARAL+K +L LDE +N+DA+ +
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 1394 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVEQGNPQTLLQD 1441
+ G+T++ ++H + + + D + +L G LV+ G P+ L +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 95.9 bits (238), Expect = 2e-22
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
V L+ V++ + G ++G G+GK++ + I G + + G ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 669 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
I V Q + T +NI F S E K V+ + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR----VEEVAKILDIHHVL 134
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
LSG Q+ R+ALARA+ + +LD+ S +DA++ + L T
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 784 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
++ +H+ + AD V V+ KG++ +G DL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 115 bits (290), Expect = 9e-30
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1219 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+E +++++ Y KP L I TIE G V G G GK+++L + G+I
Sbjct: 3 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ +G P+ ++G+ +P+ + S+ D L +K+ K + +
Sbjct: 59 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMD 109
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+E+V + K+ S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 110 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 168
Query: 1397 SSECK--GMTVITIAHRISTVLNMDEILIL 1424
K G+ +I+ +S D L
Sbjct: 169 LEILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 87.7 bits (217), Expect = 4e-20
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 19/194 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 671
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 672 YVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730
++P+ + ++ D + + ++ L+ V + + +K L
Sbjct: 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE-----SVE--VLDLKKKLGEL 126
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790
S G R+ LA + ++IY+LDD + A+D +L + + I
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE- 185
Query: 791 QAISAADMVVVMDK 804
+S D+ + K
Sbjct: 186 --LSYCDVNENLHK 197
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 109 bits (274), Expect = 3e-27
Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
+++F + ++G TGAGKS L + + G++ ++G +I TP+ R
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1298 VVPQSPFLFE--GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1355
VPQ LF R+ + ++ V+E E +G+ + S
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERD-----RRVREMAEKLGIAHLLDRKPARLS 128
Query: 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRIS 1413
G+RQ + LARAL+ ++L LDE + VD +T +L + + ++ + H +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1414 TVLNM-DEILILDHGHLVEQGNPQTLLQDECSVFSSFVRASTM 1455
+ DE+ ++ +G +VE+G + L + + F+ A +
Sbjct: 189 EAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNL 231
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.1 bits (223), Expect = 2e-20
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 21/210 (10%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
N LN V + + ++G G+GKS L I G + G + +G
Sbjct: 13 NFRLN-VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
I +VPQ + ++ NI +G + + V G + K
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR------VREMAEKLGIAHLLDRKP 124
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
LSGG+R R+ALARA+ + +LD+ LSAVD + ++ + T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 788 HNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
H++ A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 77.7 bits (190), Expect = 8e-17
Identities = 18/185 (9%), Positives = 37/185 (20%), Gaps = 26/185 (14%)
Query: 1249 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1308
+ I G G GK++++ + + + T R +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1309 SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368
+++ + A
Sbjct: 63 FFTSKKLVGSYGVNVQYF--------------------------EELAIPILERAYREAK 96
Query: 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428
KV+ +DE + V+ + EI L
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
Query: 1429 LVEQG 1433
L+E
Sbjct: 157 LIELT 161
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 66.9 bits (162), Expect = 5e-13
Identities = 15/178 (8%), Positives = 40/178 (22%), Gaps = 17/178 (9%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYD 695
+ + GE G GK++L+ I+ + +RD +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTGF 47
Query: 696 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755
+E K + + + A A + ++D+
Sbjct: 48 RIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107
Query: 756 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 813
+ ++ H + + + + +
Sbjct: 108 I--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 16/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)
Query: 1249 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1308
V + G G GK+++++ + G + + R + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1309 SLRDNLDPFHMNDDLKIWSVLEK--------CHVKEEVEAVGLETFVKESGISFSVGQRQ 1360
+ + L + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
I R L + + L + ++++ + + + +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 45.7 bits (106), Expect = 2e-05
Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 3/300 (1%)
Query: 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSF 330
+ I G+ ++N + LL L+ F + L L + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 331 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN 390
+ + Y K+ + + + V ++ + + + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 391 SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKD 450
IG+ + + Y + + + + I+ I + + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 451 ERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL 510
+ H L G E + + ++ +
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 511 FSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 569
+ F + L A + + +L+ PL S V + + L L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 45.7 bits (106), Expect = 3e-05
Identities = 33/307 (10%), Positives = 84/307 (27%), Gaps = 10/307 (3%)
Query: 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 331
Y Y ++ ++ I PLL+ I + + D V + + + L F
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 332 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 391
+ + L +S + + + V + ++ +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 392 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 451
+ I + + + F + +T+ + + + + ++ K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 452 RIRRTGEILTHIR---------TLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502
R + E+ + + + T TR ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 503 FWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISI 562
T + G + + + + + L PL L +F S+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 563 RRLTRFL 569
R+ + +
Sbjct: 312 DRVFQLI 318
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1249 VGIVGRTGAGKSSILNALFR------------LTPICGGQILVDGLNIINTPVRDLRGRF 1296
VG+VG GKS++L+ + L P G DG + + DL G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVM---ADLPGLI 60
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
Q L LR + + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP 97
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667
VAV GE GSGKSS +N++ G G+
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 39.4 bits (91), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664
L LP+ + V+G SGKSS+L +I+G L GS
Sbjct: 22 LDLPQ---IVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667
L LP+ +AV+G +GKSS+L + +G L GS +
Sbjct: 24 LDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1249 VGIVGRTGAGKSSILNAL 1266
VG+VG AGKSS+L A+
Sbjct: 4 VGLVGYPNAGKSSLLAAM 21
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1455 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.91 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.6 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.59 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.45 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.29 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.13 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.06 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.8 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.66 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.57 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.38 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.14 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.54 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.46 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.42 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.26 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.19 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.16 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.87 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.68 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.49 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.19 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.04 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.93 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.87 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.79 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.77 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.67 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.5 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.42 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.34 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.25 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.2 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.16 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.01 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.92 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.86 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.83 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.82 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.73 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.67 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.55 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.44 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.35 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.31 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.23 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.11 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.08 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.05 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 92.98 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 92.9 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 92.83 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.82 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 92.82 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 92.74 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.7 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.68 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.65 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.6 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.58 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.55 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.55 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.55 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 92.53 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.5 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 92.42 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.36 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.27 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 92.27 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.2 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.18 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.08 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.06 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.95 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.9 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.85 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.66 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.63 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.46 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.37 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.28 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.16 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.14 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.1 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.08 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 91.02 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.94 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 90.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.85 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.82 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 90.81 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.78 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.78 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.7 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.59 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.56 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.53 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.5 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.39 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.35 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.35 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.31 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.21 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.11 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.09 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.98 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 89.89 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.81 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.71 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.66 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 89.64 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 89.63 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.52 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 89.48 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.41 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.4 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.29 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.27 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.26 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.19 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.18 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 89.17 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.15 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 88.88 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 88.79 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 88.78 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 88.77 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.74 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 88.62 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 88.61 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.58 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.58 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 88.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.49 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.35 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.31 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.26 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 88.06 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.98 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 87.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.93 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.92 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 87.9 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.84 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.82 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.71 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.69 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.68 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.6 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.6 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 87.52 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.37 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 87.36 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.31 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 87.3 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.16 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 87.14 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.02 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.99 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.94 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 86.92 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 86.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.77 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 86.7 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 86.67 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.62 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.47 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.39 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 86.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 86.39 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 86.28 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.23 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.21 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 86.16 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.05 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.02 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 86.02 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.93 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.89 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 85.8 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 85.79 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 85.79 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 85.74 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 85.74 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.68 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 85.64 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 85.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.31 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.22 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.18 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.11 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.09 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.91 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.89 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 84.85 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 84.82 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 84.53 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.51 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.49 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.47 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 84.41 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.2 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 84.2 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.12 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 84.07 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 83.86 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 83.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 83.84 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 83.81 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 83.79 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 83.78 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 83.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.74 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.71 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.68 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 83.67 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.67 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 83.56 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 83.41 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.13 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.12 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 82.99 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 82.98 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 82.93 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.92 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 82.82 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 82.79 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.74 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 82.73 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 82.44 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 82.41 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 82.38 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 82.34 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 82.33 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 82.32 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.32 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.29 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 82.2 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 82.17 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 82.13 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.1 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 82.09 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 81.99 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 81.87 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.86 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 81.83 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.77 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 81.76 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.69 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 81.67 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 81.66 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.59 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 81.54 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 81.47 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 81.36 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 81.36 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 81.35 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 81.34 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.31 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 81.28 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 81.26 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 81.23 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.22 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 81.21 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 81.12 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.11 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 81.1 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 80.97 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 80.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 80.94 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 80.94 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 80.9 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 80.9 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 80.81 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 80.8 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 80.74 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 80.67 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.66 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 80.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 80.61 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.6 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 80.6 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 80.57 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 80.52 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.43 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.4 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 80.34 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 80.31 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 80.3 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.16 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 80.15 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 80.14 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 80.12 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 80.1 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 80.1 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.1 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 80.1 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 80.06 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=484.64 Aligned_cols=237 Identities=35% Similarity=0.560 Sum_probs=228.4
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18999899996699885202235997589299998899971999999983378899766999897389999587714638
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1455)
.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.|||.|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9807777777758884285999-9927799999990099999968--994154169999993699999999988259988
Q 000511 1298 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1298 ~IpQdp~lf~gTIReNLdp~~~-~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~I 1374 (1455)
+|||+|++|++|||+|+.++.+ .++++++.+++.+++.+++..+ |+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHHC
Q ss_conf 99856576989998999999999825994799862681467410879899398598967945885029948999998508
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAST 1454 (1455)
Q Consensus 1375 LiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~~~~~ 1454 (1455)
+|||||||+||+.|++.|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|++|++++++.|++|++.+.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998299878999999813
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=484.64 Aligned_cols=241 Identities=31% Similarity=0.533 Sum_probs=230.3
Q ss_pred CCCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 98841899989999669988520223599758929999889997199999998337889976699989738999958771
Q 000511 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293 (1455)
Q Consensus 1214 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR 1293 (1455)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCCEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 4638980777777775888428599-99927799999990099999968--99415416999999369999999998825
Q 000511 1294 GRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1294 ~~i~~IpQdp~lf~gTIReNLdp~~-~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1455)
+++++|||+|.+|+||||||+..+. ..+|++++++++.+++.+++..+ |+|+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 99889985657698999899999999982599479986268146741087989939859896794588502994899999
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~ 1450 (1455)
+|+|+|||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+|+|.|+|+||++++ +.|++||
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~-~~y~~l~ 250 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLY 250 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTT-SHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998999837654479779999999999875388899996899999859999999899999988999998688-4999999
Q ss_pred HHHCC
Q ss_conf 85089
Q 000511 1451 RASTM 1455 (1455)
Q Consensus 1451 ~~~~~ 1455 (1455)
+.+.+
T Consensus 251 ~~Q~l 255 (255)
T d2hyda1 251 SIQNL 255 (255)
T ss_dssp TTTTC
T ss_pred HHCCC
T ss_conf 97479
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=473.90 Aligned_cols=238 Identities=34% Similarity=0.535 Sum_probs=227.6
Q ss_pred CCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 88418999899996699885202235997589299998899971999999983378899766999897389999587714
Q 000511 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294 (1455)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1294 (1455)
..|.|+|+||+|+|+.+..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|++.++...+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CCEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 63898077777777588842859--999927799999990099999968--99415416999999369999999998825
Q 000511 1295 RFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1295 ~i~~IpQdp~lf~gTIReNLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1455)
+++++||+|.+|++|+++|+..+ ...++++++++++.+++.++++.+ |||+.+++.|.+||||||||+|||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf 99889985657698999899999999982599479986268146741087989939859896794588502994899999
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFV 1450 (1455)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~ 1450 (1455)
+|+|+|||||||+||++|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|+||+++. +.|++||
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~-~~y~~l~ 248 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 248 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHT-SSHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CHHHHHH
T ss_conf 998899516444589889999999998752278899998879999859999999899999988999998689-3999999
Q ss_pred HHH
Q ss_conf 850
Q 000511 1451 RAS 1453 (1455)
Q Consensus 1451 ~~~ 1453 (1455)
+.+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHC
T ss_conf 972
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=464.43 Aligned_cols=239 Identities=31% Similarity=0.448 Sum_probs=223.3
Q ss_pred CCCCCCEEEEEEEEEECCC-CCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 9988418999899996699-885202235997589299998899971999999983378899766999897389999587
Q 000511 1213 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD 1291 (1455)
Q Consensus 1213 wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~ 1291 (1455)
++.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHCCCEEEECCCCCCCCCHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 714638980777777775888428599--99927799999990099999968--99415416999999369999999998
Q 000511 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1367 (1455)
Q Consensus 1292 lR~~i~~IpQdp~lf~gTIReNLdp~~--~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARA 1367 (1455)
+|+++++|||+|.+|++|+++|+..+. ..++++++++.+++++.++++.+ |+++.+++.|.+||||||||++||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf 8259988998565769899989999999998259--94799862681467410879899398598967945885029948
Q 000511 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSV 1445 (1455)
Q Consensus 1368 lL~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~--~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~ 1445 (1455)
++++|+|+|||||||+||+.|+..|++.|++..+ ++|+|+||||++.+..||+|+||++|+|+|.|+|+||++++ +.
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~-~~ 244 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GC 244 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT-SH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-CH
T ss_conf 45687078716757656853689999999997650698999995979999859999999899999988999998597-58
Q ss_pred HHHHHHH
Q ss_conf 9999985
Q 000511 1446 FSSFVRA 1452 (1455)
Q Consensus 1446 f~~l~~~ 1452 (1455)
|++|+++
T Consensus 245 y~~l~~A 251 (251)
T d1jj7a_ 245 YWAMVQA 251 (251)
T ss_dssp HHHHHCC
T ss_pred HHHHHCC
T ss_conf 8999629
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=468.71 Aligned_cols=233 Identities=32% Similarity=0.551 Sum_probs=221.5
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998852022359975892999988999719999999833788997669998973899995877146389
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++||+|+|+++ +++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCCC-CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 7999889987999-841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred EECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 8077777777588842859--999927799999990099999968--994154169999993699999999988259988
Q 000511 1299 VPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1455)
Q Consensus 1299 IpQdp~lf~gTIReNLdp~--~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~I 1374 (1455)
|||+|.+|++|+|||+..+ ...++++++++++.+++.+++..+ ++++.++++|.+||||||||+|||||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf 9985657698999899999999982599479986268146741087989939859896794588502994899999850
Q 000511 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRAS 1453 (1455)
Q Consensus 1375 LiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~~~~ 1453 (1455)
+|||||||+||++++..|++.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|+||++++ +.|++|++++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~-~~y~~l~~~Q 238 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSEQ 238 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHC-HHHHHHHHCC
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC-HHHHHHHHHH
T ss_conf 99658865569889999988788871799899997879999849999999899999999999998689-6999999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=405.61 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=201.0
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------ 668 (1455)
.|+++|++|+|+.+. .++ |+|+||++++|+.++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 1 eI~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEEESSTTS-CEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CEEEEEEEEEECCCC-CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHH
T ss_conf 929999999908999-603---7424899849999999999999899999999735788888999999994400246553
Q ss_pred -CEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf -1999848887888688888535999-99789999999823228784036997530257977666089999999998813
Q 000511 669 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 669 -~iayv~Q~pwL~n~TIreNIlfg~~-~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 746 (1455)
.++||+|+||++++||+|||.++.+ .+.+++..+++.|.+.+++..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 52889824465578400035223575543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99988871785320199999999994218466896599982683101018989999398699942977887400
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 820 (1455)
Q Consensus 747 ~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~ 820 (1455)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|+|||+++.+..||+|++|++|+|++.|+++++..+.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRN-MHK-ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHH-HHH-HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6513556477655598999999999-999-85899899997889999849999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=408.07 Aligned_cols=222 Identities=28% Similarity=0.401 Sum_probs=204.5
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------
Q ss_conf 98449998126860478863336540000147419969999968998478999998648668870899709---------
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g--------- 668 (1455)
.+..|+++|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||++.|+|.+++.+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCEEEEEEEEEEECCCC-CCC---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 788799998899959999-760---6443899839989999889998099999999712786300015399875307888
Q ss_pred ----CEEEECCCCCCCCCCHHHHHCCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----1999848887888688888535999-99789999999823228784036997530257977666089999999998
Q 000511 669 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1455)
Q Consensus 669 ----~iayv~Q~pwL~n~TIreNIlfg~~-~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARA 743 (1455)
.++||+|+|+++++||||||.||.+ .++++..++++.|++.+++..+|+|.+|.+|++|.+|||||||||+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 81399988871785320199999999994218466896599982683101018989999398699942977887400367
Q 000511 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSG 823 (1455)
Q Consensus 744 lY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~ 823 (1455)
+|.+|+|++||||+|+||+++++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++|+.+..+.+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~-l~~-l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEA-LDV-LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHH-HHH-HTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 8559989998376544797799999999-998-75388899996899999859999999899999988999998688499
Q ss_pred CC
Q ss_conf 65
Q 000511 824 FW 825 (1455)
Q Consensus 824 ~~ 825 (1455)
.+
T Consensus 247 ~~ 248 (255)
T d2hyda1 247 EH 248 (255)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=401.10 Aligned_cols=222 Identities=28% Similarity=0.396 Sum_probs=205.2
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------
Q ss_conf 98449998126860478863336540000147419969999968998478999998648668870899709---------
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g--------- 668 (1455)
....|+++|++|+|+..+ .++ |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCEEEEEEEEEEEECCCC-CCE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 830799998899929999-763---5332899859999999999998599999998621688846898788012111066
Q ss_pred ----CEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----199984888788868888853599--99978999999982322878403699753025797766608999999999
Q 000511 669 ----SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1455)
Q Consensus 669 ----~iayv~Q~pwL~n~TIreNIlfg~--~~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 742 (1455)
.++||+|+|+++++|+++|+.++. .++.+++.++++.|.+.++++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 88139998887178532019999999999421846689659998268310101898999939869994297788740036
Q 000511 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYS 822 (1455)
Q Consensus 743 AlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~ 822 (1455)
|++.+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+.++.+.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 243 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHH-HHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 99549988995164445898899999999-987-5227889999887999985999999989999998899999868939
Q ss_pred CCC
Q ss_conf 765
Q 000511 823 GFW 825 (1455)
Q Consensus 823 ~~~ 825 (1455)
+.+
T Consensus 244 y~~ 246 (253)
T d3b60a1 244 YAQ 246 (253)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=394.11 Aligned_cols=222 Identities=24% Similarity=0.321 Sum_probs=200.2
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------
Q ss_conf 98449998126860478863336540000147419969999968998478999998648668870899709---------
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g--------- 668 (1455)
-+..|+++|++|+|+...+.+ +|+|+||++++|++++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~---vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~ 84 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVL---VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHR 84 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCC---SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH
T ss_pred CCCEEEEEEEEEECCCCCCCE---EEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHH
T ss_conf 533699999899889999997---67443899849989999999998499999998614378768998899853110137
Q ss_pred ----CEEEECCCCCCCCCCHHHHHCCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----19998488878886888885359999--978999999982322878403699753025797766608999999999
Q 000511 669 ----SIAYVPQVPWILSGTIRDNILFGKNY--DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1455)
Q Consensus 669 ----~iayv~Q~pwL~n~TIreNIlfg~~~--d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 742 (1455)
.++||+|+|+++++||+|||.+|... +.++.....+.+++...++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 85 ~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 85 YLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp HHHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEE
T ss_conf 88877654045650027634655454210130278899999999899999856121113675167668954704899860
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 8813999888717853201999999999942184668--96599982683101018989999398699942977887400
Q 000511 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 820 (1455)
Q Consensus 743 AlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~ 820 (1455)
|++++|+|++||||+|+||+++++.|++. +.. +.+ ++|+|++||+++.+..||+|++|++|+|+++|+++|+.+..
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~-l~~-l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQL-LYE-SPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHT-CGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 44568707871675765685368999999-999-7650698999995979999859999999899999988999998597
Q ss_pred CCCC
Q ss_conf 3676
Q 000511 821 YSGF 824 (1455)
Q Consensus 821 ~~~~ 824 (1455)
+.+.
T Consensus 243 ~~y~ 246 (251)
T d1jj7a_ 243 GCYW 246 (251)
T ss_dssp SHHH
T ss_pred CHHH
T ss_conf 5889
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=392.34 Aligned_cols=214 Identities=36% Similarity=0.635 Sum_probs=197.4
Q ss_pred CCEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCC
Q ss_conf 84499981268604788633365400001474199699999689984789999986486688708997091999848887
Q 000511 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678 (1455)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pw 678 (1455)
+..+.+++.+|. ..|+ |+|+||+|++|++++|+||+|||||||+++|+|.+++++|+|.++|+++|++|.||
T Consensus 36 ~~~i~~~~~~~~-----g~pv---L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~ 107 (281)
T d1r0wa_ 36 ENNVSFSHLCLV-----GNPV---LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSW 107 (281)
T ss_dssp ----CHHHHHHT-----TCEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCC
T ss_pred CCCEEEEECCCC-----CCEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCC
T ss_conf 896799976989-----9767---73759998599999999899982999999995797478828999999999816430
Q ss_pred CCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCC
Q ss_conf 88868888853599999789999999823228784036997530257977666089999999998813999888717853
Q 000511 679 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 758 (1455)
Q Consensus 679 L~n~TIreNIlfg~~~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~S 758 (1455)
++++||+|||.||..+++.+++.++++|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||+|
T Consensus 108 l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 108 IMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp CCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 26760321420333456057999999977699998461233235555423779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 201999999999942184668965999826831010189899993986999429778874003
Q 000511 759 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 821 (1455)
Q Consensus 759 aLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~ 821 (1455)
+||+.+.+.|++.++.. +.+++|+|++||+++.+..||+|++|++|++++.|+++|+.....
T Consensus 188 ~LD~~~~~~i~~~~~~~-~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~ 249 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 249 (281)
T ss_dssp SSCHHHHHHHHHHCCCC-CTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHH-HHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCC
T ss_conf 48989999999999988-628999999925289998599999998999999878999960594
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=391.46 Aligned_cols=218 Identities=26% Similarity=0.372 Sum_probs=197.3
Q ss_pred CCCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 84189998999966998852022359975892999988999719999999833788997669998973899995877146
Q 000511 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1455)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1295 (1455)
.+.|.|+|+++. ..|||+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 896799976989----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred CEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 3898077777777588842859999927799999990099999968--99415416999999369999999998825998
Q 000511 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1296 i~~IpQdp~lf~gTIReNLdp~~~~sd~ei~~aL~~~~L~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ 1373 (1455)
++++||+|.+|++|+|+|+.++...++.+++.+++.+++.+.+..+ ++++.+++.|.+||||||||++|||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHH
Q ss_conf 8998565769899989999999-99825994799862681467410879899398598967945885029948999998
Q 000511 1374 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1374 ILiLDEaTS~lD~~Te~~i~~~-i~~~f~~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~~ 1451 (1455)
|+|||||||+||+.++..+.+. +....+++|+|+|+||++.+..||||++|++|++++.|+|+||++.. +.|++.+.
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~-~~~~~~~~ 256 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLR-PDFSSKLM 256 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHC-HHHHHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCC-CHHHHHHC
T ss_conf 5133385544898999999999998862899999992528999859999999899999987899996059-48999872
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=394.64 Aligned_cols=216 Identities=27% Similarity=0.408 Sum_probs=199.3
Q ss_pred EEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 9998126860478863336540000147419969999968998478999998648668870899709-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------- 668 (1455)
++++|++|+|+.+ +++ |+|+||++++|+.++|+||+|||||||++.|+|.++|++|+|.++|
T Consensus 2 le~knvsf~Y~~~--~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp EEEEEEEECSSSS--SCS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEECCCC--CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH
T ss_conf 7999889987999--841---42258998599999999999997999999999960989877988998844246788874
Q ss_pred CEEEECCCCCCCCCCHHHHHCCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 199984888788868888853599--999789999999823228784036997530257977666089999999998813
Q 000511 669 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 669 ~iayv~Q~pwL~n~TIreNIlfg~--~~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 746 (1455)
.|+||+|+|+++++||||||.++. ..+++...++++.+.+...+..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36797566545785345430124455542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEECCEEEEECCHHHHHHCCCCCC
Q ss_conf 999888717853201999999999942184668965999826831010189899993986999429778874003676
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824 (1455)
Q Consensus 747 ~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~~ 824 (1455)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+.+..+.+.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~ 232 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKA-LDS-LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYA 232 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHH-HHH-HHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHH
T ss_conf 9989996588655698899999887-888-717998999978799998499999998999999999999986896999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=8.5e-43 Score=355.46 Aligned_cols=222 Identities=24% Similarity=0.346 Sum_probs=194.4
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18999899996699885202235997589299998899971999999983378899766999897389999587714638
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+. ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EEECCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 98077777777-58884285999---992779999999009999996899415416999999369999999998825998
Q 000511 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1298 ~IpQdp~lf~g-TIReNLdp~~~---~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ 1373 (1455)
+|||+|.+|+. |++||+..+.. .+.+++.+. ..+..+.+||+...+.....||||||||++|||||..+|+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 98003353422209999999998739999999999-----9999987598556609954699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCHHHH
Q ss_conf 899856576989998999999999825--99479986268146741-0879899398598967945885029948999
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSS 1448 (1455)
Q Consensus 1374 ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~f~~ 1448 (1455)
||+||||||+||+.+...+++.|++.. .++|+|+|||+++.+.. ||||++|++|+|++.|+|+++.++|...|-+
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~ 234 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
T ss_conf 243068866689899989999999998731980799948999999869999999899999985999998689998999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.6e-43 Score=355.06 Aligned_cols=214 Identities=25% Similarity=0.415 Sum_probs=188.3
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998852022359975892999988999719999999833788997669998973899995877146389
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++|++++|+. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+.+.+.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred EECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 8077777777-588842859----99992779999999009999996899415416999999369999999998825998
Q 000511 1299 VPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1455)
Q Consensus 1299 IpQdp~lf~g-TIReNLdp~----~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ 1373 (1455)
|||++.+|+. |++||+..+ +...++++.++++.++ ++.........||||||||++|||||+.+|+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLK---------IEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTT---------CTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC---------CHHHHHCCHHHCCHHHHCCHHHHHHHHCCCC
T ss_conf 5121111746657788888776405538999999999825---------6555758955479998401403043443677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 899856576989998999999999825--99479986268146741-08798993985989679458850299489
Q 000511 1374 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1374 ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~f 1446 (1455)
+|+||||||+||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|.+|++++.|+|++++++|...+
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 1443478767998999999999999986479689997499999999699999997999999869999986899879
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4e-43 Score=358.14 Aligned_cols=226 Identities=25% Similarity=0.355 Sum_probs=192.2
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 18999899996699885202235997589299998899971999999983378899766999897389999---587714
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1294 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~ 1294 (1455)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CCEEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 63898077777777-5888428599---9992779999999009999996899415416999999369999999998825
Q 000511 1295 RFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1295 ~i~~IpQdp~lf~g-TIReNLdp~~---~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1455)
++++|||+|.+|+. |++||+...- ..+.++..+. ..+..+.+||+.........||||||||++|||||..
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~ 157 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999-----9999866591766648954599999858998757760
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 998899856576989998999999999825--99479986268146741-087989939859896794588502994899
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~f~ 1447 (1455)
+|++|++|||||++|+.+...+++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+++.++|...|-
T Consensus 158 ~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf 46614544786679989988998999999863598799997999999996999999989999998699999868999799
Q ss_pred H
Q ss_conf 9
Q 000511 1448 S 1448 (1455)
Q Consensus 1448 ~ 1448 (1455)
+
T Consensus 238 ~ 238 (242)
T d1oxxk2 238 A 238 (242)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.9e-43 Score=355.32 Aligned_cols=217 Identities=27% Similarity=0.384 Sum_probs=188.1
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998852022359975892999988999719999999833788997669998973899995877146389
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1455)
|+++||+++|++ ..+|+|+||+|++||.+||+||||||||||++++.|+.+|++|+|.+||.|+++.+. .|+++++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEEE
T ss_conf 999999999899--999811177886998999998999829999999965878888889999997788864--4432223
Q ss_pred EECCCCCCCC-CHHHHCCCCCCC---CH----HHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8077777777-588842859999---92----779999999009999996899415416999999369999999998825
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFHMN---DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1455)
Q Consensus 1299 IpQdp~lf~g-TIReNLdp~~~~---sd----~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1455)
|||+|.+|+. |++||+..+... +. +++.++++.+++. .........||||||||++|||||+.
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~---------~~~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA---------HLLDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH---------HHHHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 433420264333788978999875998899999999999757886---------56648965699999999999999703
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf 998899856576989998999999999825--99479986268146741-087989939859896794588502994899
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFS 1447 (1455)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~f~ 1447 (1455)
+|++++|||||++||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|++++++|...|-
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHH
T ss_conf 99889975888788988998999999999874298799994899999996999999979999998089999738999799
Q ss_pred H
Q ss_conf 9
Q 000511 1448 S 1448 (1455)
Q Consensus 1448 ~ 1448 (1455)
+
T Consensus 228 ~ 228 (232)
T d2awna2 228 A 228 (232)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.5e-42 Score=353.56 Aligned_cols=223 Identities=22% Similarity=0.328 Sum_probs=188.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 18999899996699885202235997589299998899971999999983378899766999897389999587----71
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----LR 1293 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----lR 1293 (1455)
.|+++||+++|+. ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCCEEEECCCCCCCC-CHHHHCCCC---CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 463898077777777-588842859---9999277999999900999999689941541699999936999999999882
Q 000511 1294 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1455)
Q Consensus 1294 ~~i~~IpQdp~lf~g-TIReNLdp~---~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL 1369 (1455)
+++++|||+|.+|+. |++||+... ...+.+++.+.. .+.++.+|++.........||||||||++|||||.
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v-----~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~ 155 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-----REVAELLGLTELLNRKPRELSGGQRQRVALGRAIV 155 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHH-----HHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 5512002212223101166763306877299989999999-----99998759966762993349999999999999982
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf 5998899856576989998999999999825--99479986268146741-08798993985989679458850299489
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVF 1446 (1455)
Q Consensus 1370 ~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~f 1446 (1455)
.+|++|+|||||++||+.+...|++.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|+|++++|...|
T Consensus 156 ~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~ 235 (240)
T d1g2912 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235 (240)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHH
T ss_conf 69988982588765698999899999999986369889999599999999699999998999999859999982899989
Q ss_pred H
Q ss_conf 9
Q 000511 1447 S 1447 (1455)
Q Consensus 1447 ~ 1447 (1455)
-
T Consensus 236 ~ 236 (240)
T d1g2912 236 V 236 (240)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3e-42 Score=351.05 Aligned_cols=219 Identities=24% Similarity=0.380 Sum_probs=188.9
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899989999669988--5202235997589299998899971999999983378899766999897389999587---71
Q 000511 1219 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1293 (1455)
|+++|++.+|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCCEEEECCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 463898077777777-588842859---99992----7799999990099999968994154169999993699999999
Q 000511 1294 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1455)
Q Consensus 1294 ~~i~~IpQdp~lf~g-TIReNLdp~---~~~sd----~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LA 1365 (1455)
+++++|||+|-+|+. |++||+... ...+. +++.++|+.+ ||+.........||||||||++||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v---------gL~~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV---------GLGDKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH---------STTTTTSSCBSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCCHHHHCCHHHCCHHHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976---------990355489434999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 98825998899856576989998999999999825--99479986268146741-0879899398598967945885029
Q 000511 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1366 RAlL~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~ 1442 (1455)
|||..+|++|++||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|++++++|
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P 232 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSS
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 40105898687446556589888567999999998646978999838999999869999999799999987999997289
Q ss_pred CCHH
Q ss_conf 9489
Q 000511 1443 CSVF 1446 (1455)
Q Consensus 1443 ~s~f 1446 (1455)
...|
T Consensus 233 ~~~~ 236 (240)
T d3dhwc1 233 KTPL 236 (240)
T ss_dssp CCTT
T ss_pred CCHH
T ss_conf 9857
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-41 Score=346.07 Aligned_cols=227 Identities=23% Similarity=0.353 Sum_probs=188.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 189998999966998852022359975892999988999719999999833788997669998973899995--------
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-------- 1289 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-------- 1289 (1455)
.|+++|++++|+. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCCEEEECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHH-CCCCCCCHHH
Q ss_conf -----8771463898077777777-588842859----9999277999999900999999689941541-6999999369
Q 000511 1290 -----RDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQ 1358 (1455)
Q Consensus 1290 -----~~lR~~i~~IpQdp~lf~g-TIReNLdp~----~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~-e~G~~LS~GQ 1358 (1455)
...|+++++|+|+|-+|+. |+++|+..+ ...+..+..+. ..+..+.+|+..... .....|||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAKVGIDERAQGKYPVHLSGGQ 154 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCCHHHHCCCCCCCCHHH
T ss_conf 1767999745448998332314110102136565787629998999999-----99999982995244306822056778
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHH
Q ss_conf 999999998825998899856576989998999999999825-99479986268146741-0879899398598967945
Q 000511 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQ 1436 (1455)
Q Consensus 1359 rQll~LARAlL~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~ 1436 (1455)
+||++|||||..+|++|++||||++||+.+...|.+.|++.. ++.|+|+|+|+++.+.. ||||+||.+|+|+|.|+|+
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ 234 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 88989999984399878852455568878888998765541036883389948999999869999999799999984999
Q ss_pred HHHCCCCCHHHH-HHH
Q ss_conf 885029948999-998
Q 000511 1437 TLLQDECSVFSS-FVR 1451 (1455)
Q Consensus 1437 eLl~~~~s~f~~-l~~ 1451 (1455)
++++++...|-+ ++.
T Consensus 235 ev~~~P~~~~~~~ll~ 250 (258)
T d1b0ua_ 235 QVFGNPQSPRLQQFLK 250 (258)
T ss_dssp HHHHSCCSHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 9983899999999881
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.2e-41 Score=346.35 Aligned_cols=213 Identities=25% Similarity=0.340 Sum_probs=178.7
Q ss_pred EEEEEEEEEECCCCC--CCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899989999669988--52022359975892999988999719999999833788997669998973899995877----
Q 000511 1219 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL---- 1292 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l---- 1292 (1455)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+...+.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCCEEEECCCCCCCC-CHHHHCCC---C---CCCCHHHHHHHHHHHCHHHHHHHCCCCHHH-HCCCCCCCHHHHHHHHH
Q ss_conf 1463898077777777-58884285---9---999927799999990099999968994154-16999999369999999
Q 000511 1293 RGRFAVVPQSPFLFEG-SLRDNLDP---F---HMNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICL 1364 (1455)
Q Consensus 1293 R~~i~~IpQdp~lf~g-TIReNLdp---~---~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i-~e~G~~LS~GQrQll~L 1364 (1455)
|+++++|+|+|.+|+. |++||+.. . ...+.++..+. ..+..+..||.... ......||||||||++|
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaI 156 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMAELEERFANHKPNQLSGGQQQRVAI 156 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHH-----HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 5557788041241768668887757888722478999999999-----99988762423455348802389999999998
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHCEEEEEECCEEEEECCHH
Q ss_conf 998825998899856576989998999999999825--994799862681467410879899398598967945
Q 000511 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVEQGNPQ 1436 (1455)
Q Consensus 1365 ARAlL~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~~~D~I~vld~GrivE~g~p~ 1436 (1455)
||||..+|++|++|||||+||+.+...+++.|++.. .++|+|+|||+++.+.-||||++|++|+|+|.|+++
T Consensus 157 AraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~r 230 (230)
T d1l2ta_ 157 ARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (230)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCCC
T ss_conf 75652278889946876546989999999999999984399999987888999869989999899999952579
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-40 Score=337.49 Aligned_cols=219 Identities=24% Similarity=0.386 Sum_probs=192.0
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCC
Q ss_conf 41899989999669988520223599758929999889997199999998337889976699989738999958771463
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1455)
|.|+++|++.+|+. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 898077777777-5888428599---999277999999900999999689941541699999936999999999882599
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1455)
Q Consensus 1297 ~~IpQdp~lf~g-TIReNLdp~~---~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~ 1372 (1455)
+++||++.+|+. |++||+..+. ..++.++++.+++. .+.++++....+.-..||+|||||+++|||++.+|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 6750015468786677888989986179989999999999-----98679788885045337998989999999986599
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCC
Q ss_conf 8899856576989998999999999825-99479986268146741-08798993985989679458850299
Q 000511 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDEC 1443 (1455)
Q Consensus 1373 ~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~ 1443 (1455)
+|++|||||++||+.+...+++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|+++.++.+
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~ 225 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 225 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTT
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 9887337988979899999999999999659989999598999999699999998999999928999986528
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.1e-40 Score=336.24 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=185.6
Q ss_pred CCEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 418999899996699885202235997589299998899971999999983378899766999897389999587714-6
Q 000511 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG-R 1295 (1455)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~-~ 1295 (1455)
--++++|++++|+. ..+|+||||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.|+...+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred CEEEECCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHHCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 3898077777777-5888428599--99927799999990099999968-994154169999993699999999988259
Q 000511 1296 FAVVPQSPFLFEG-SLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1296 i~~IpQdp~lf~g-TIReNLdp~~--~~sd~ei~~aL~~~~L~~~i~~l-gLdt~i~e~G~~LS~GQrQll~LARAlL~~ 1371 (1455)
++++||++.+|+. |++||+..+. ....++..+.++.+ .+.+ +++.........||||||||++|||||+.+
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 3556765545776369999998887327888999999999-----98741768887585433899999999999999829
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf 98899856576989998999999999825-99479986268146741-0879899398598967945885029
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1372 ~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~ 1442 (1455)
|++|+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+.. ||||++|++||+++.|+|+++++++
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 230 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf 9874003988679999999999999999968998999958899999969999999899999984899984298
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-40 Score=337.73 Aligned_cols=217 Identities=22% Similarity=0.357 Sum_probs=184.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-C
Q ss_conf 189998999966998852022359975892999988999719999999833788997669998973899995877146-3
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR-F 1296 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~-i 1296 (1455)
-++++|++.+|+. ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+.+++ +
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEEECCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHH
Q ss_conf 898077777777-58884285999----------------9927799999990099999968994154169999993699
Q 000511 1297 AVVPQSPFLFEG-SLRDNLDPFHM----------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1359 (1455)
Q Consensus 1297 ~~IpQdp~lf~g-TIReNLdp~~~----------------~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQr 1359 (1455)
+++||+|.+|+. |++||+..+.. ..+++..+ ...+.++.+|++........+||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 725776424788742321430133303450456654213532899999-----999998761963020595356991888
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHH
Q ss_conf 9999999882599889985657698999899999999982-599479986268146741-08798993985989679458
Q 000511 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQT 1437 (1455)
Q Consensus 1360 Qll~LARAlL~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~-f~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~e 1437 (1455)
||++|||||..+|++|+|||||++||+.+...+++.|++. -+++|||+|+|+++.+.. ||||+||++|++++.|+|+|
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 89999999975927232439765699999999999999999789989999476999998699999996998999966899
Q ss_pred HHCC
Q ss_conf 8502
Q 000511 1438 LLQD 1441 (1455)
Q Consensus 1438 Ll~~ 1441 (1455)
+.++
T Consensus 237 ~~~~ 240 (254)
T d1g6ha_ 237 EIKN 240 (254)
T ss_dssp HHHH
T ss_pred HHHC
T ss_conf 8654
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=9.5e-39 Score=323.00 Aligned_cols=220 Identities=24% Similarity=0.374 Sum_probs=183.7
Q ss_pred EEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEE
Q ss_conf 89998999966998852022359975892999988999719999999833788997669998973899995877146389
Q 000511 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1455)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1455)
+++ ++..+|..- .+ |+||++. +|.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.. |++|++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred EECCCCCCCC-CHHHHCCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 8077777777-5888428599-9992779999999009999996899415416999999369999999998825998899
Q 000511 1299 VPQSPFLFEG-SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1455)
Q Consensus 1299 IpQdp~lf~g-TIReNLdp~~-~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILi 1376 (1455)
|||+|.+|+. |++||+...- ..+..+..+. ..+.++.+|++...+.....||||||||++||||++.+|++|+
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 52314435220155766653233677889999-----9999986383756657944489999899999877751677067
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHH
Q ss_conf 8565769899989999999998259--9479986268146741-0879899398598967945885029948999998
Q 000511 1377 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSVFSSFVR 1451 (1455)
Q Consensus 1377 LDEaTS~lD~~Te~~i~~~i~~~f~--~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~~ 1451 (1455)
||||||+||+.+...+++.|++..+ +.|+|+|+|+++.+.. ||||++|++|++++.|+|+++++.++...++++.
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl~ 227 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHHHHHHC
T ss_conf 528655588799999999999998743976999818999999969999999899999990699983299889999857
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-36 Score=302.89 Aligned_cols=199 Identities=28% Similarity=0.401 Sum_probs=169.6
Q ss_pred EEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------CE
Q ss_conf 9998126860478863336540000147419969999968998478999998648668870899709-----------19
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g-----------~i 670 (1455)
|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++| .|
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 74 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCE
T ss_pred CEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEE
T ss_conf 999999999899---999---81117788699899999899982999999996587888888999999778886444322
Q ss_pred EEECCCCCCCCC-CHHHHHCCCCCCC-------HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 998488878886-8888853599999-------78999999982322878403699753025797766608999999999
Q 000511 671 AYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1455)
Q Consensus 671 ayv~Q~pwL~n~-TIreNIlfg~~~d-------~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLAR 742 (1455)
+||+|+|-++.. |++|||.|+.... +++-+++++...|.+-.+. ....||||||||++|||
T Consensus 75 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGR 143 (232)
T ss_dssp EEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHC-----------CHHHCCHHHHHHHHHHH
T ss_conf 2343342026433378897899987599889999999999975788656648-----------96569999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCCCCC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 881399988871785320199999999994218466--89659998268310101-898999939869994297788740
Q 000511 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 743 AlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~~~~l~~~ 819 (1455)
|+..+|++++||||+|+||+.+.+.|++. +.. +. .++|+|++||+++.... ||+|++|++|++++.|+++++...
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 97039988997588878898899899999-999-9874298799994899999996999999979999998089999738
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.2e-36 Score=299.94 Aligned_cols=200 Identities=26% Similarity=0.354 Sum_probs=169.8
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------C
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709-----------1
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g-----------~ 669 (1455)
.|+++|.+++|+. ..+ |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++| .
T Consensus 6 ~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ 79 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79 (239)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCE
T ss_conf 4999879999999---999---8130678879989999999998299999999758999878799916413547700015
Q ss_pred EEEECCCCCCCC-CCHHHHHCCCCC---CCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 999848887888-688888535999---9978----99999998232287840369975302579776660899999999
Q 000511 670 IAYVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1455)
Q Consensus 670 iayv~Q~pwL~n-~TIreNIlfg~~---~d~~----~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLA 741 (1455)
|+||+|+|-++. .||+||+.|+.. ++++ +-+++++.+.|++-. ......||||||||++||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL-----------NRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGT-----------TSCTTTCCSSCHHHHHHH
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------CCCHHHCCHHHHHHHHHH
T ss_conf 899800335342220999999999873999999999999999875985566-----------099546999998899997
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 98813999888717853201999999999942184668--965999826831010-189899993986999429778874
Q 000511 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 742 RAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~ 818 (1455)
||+..+|++++||||+|+||+.+.+.+++. +.. +.+ ++|+|++||+++... .||+|++|++|+|++.|+++++..
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 664049982430688666898999899999-999-987319807999489999998699999998999999859999986
Q ss_pred C
Q ss_conf 0
Q 000511 819 S 819 (1455)
Q Consensus 819 ~ 819 (1455)
+
T Consensus 227 ~ 227 (239)
T d1v43a3 227 R 227 (239)
T ss_dssp C
T ss_pred C
T ss_conf 8
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.9e-36 Score=301.25 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=171.9
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------ 668 (1455)
.|+++|.+.+|+.++ ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECCCC-EEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 899975799988999-899---8040789879989999989998099999999758688874599999995137311153
Q ss_pred ----CEEEECCCCCCCCC-CHHHHHCCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ----19998488878886-88888535999---997----8999999982322878403699753025797766608999
Q 000511 669 ----SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1455)
Q Consensus 669 ----~iayv~Q~pwL~n~-TIreNIlfg~~---~d~----~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkq 736 (1455)
+|+|++|+|-++.. ||+|||.|+.. .++ ++.+++++.+.|++.....| ..|||||||
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQ 147 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQ 147 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHH
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHH
T ss_conf 120451477304334666657777665567613799999999999986659176664895-----------459999985
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCH
Q ss_conf 9999998813999888717853201999999999942184668--96599982683101-01898999939869994297
Q 000511 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSS 813 (1455)
Q Consensus 737 RIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l-~~aD~Ii~l~~G~i~~~G~~ 813 (1455)
|++||||+..+|+++++|||+|+||+.+.+.+++- +.. +.+ +.|+|++||+++.. ..||+|++|++|+|++.|++
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~-l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKE-VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHH-HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 89987577604661454478667998998899899-999-9863598799997999999996999999989999998699
Q ss_pred HHHHHC
Q ss_conf 788740
Q 000511 814 ADLAVS 819 (1455)
Q Consensus 814 ~~l~~~ 819 (1455)
+++...
T Consensus 226 ~el~~~ 231 (242)
T d1oxxk2 226 EDLYDN 231 (242)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.9e-36 Score=300.62 Aligned_cols=200 Identities=27% Similarity=0.343 Sum_probs=170.2
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------ 668 (1455)
.|+++|.+++|+. .+. |+|+||++++|++++|+||+|||||||+++|.|...+++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 1899869999899---999---8560668869989999999998099999999648788989899999980356644424
Q ss_pred -----CEEEECCCCCCCCC-CHHHHHCCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf -----19998488878886-8888853599---9997----899999998232287840369975302579776660899
Q 000511 669 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1455)
Q Consensus 669 -----~iayv~Q~pwL~n~-TIreNIlfg~---~~d~----~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQk 735 (1455)
.|+||+|+|-++.. ||+|||.|+. .+++ ++-+++++.+.|.+-.. .....||||||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqk 145 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQR 145 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHH
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHH
T ss_conf 5322551200221222310116676330687729998999999999998759966762-----------99334999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCC-CCCEEEEEECCEEEEECC
Q ss_conf 99999998813999888717853201999999999942184668--965999826831010-189899993986999429
Q 000511 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 736 qRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~ 812 (1455)
|||++|||+..+|++++||||+++||+.+...|++. +.. +.+ +.|+|++||+++... .||+|++|++|+|++.|+
T Consensus 146 QRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKK-LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 999999998269988982588765698999899999-999-986369889999599999999699999998999999859
Q ss_pred HHHHHHC
Q ss_conf 7788740
Q 000511 813 SADLAVS 819 (1455)
Q Consensus 813 ~~~l~~~ 819 (1455)
++|+..+
T Consensus 224 ~~el~~~ 230 (240)
T d1g2912 224 PDEVYDK 230 (240)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
T ss_conf 9999828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=6.1e-36 Score=300.51 Aligned_cols=198 Identities=25% Similarity=0.386 Sum_probs=170.6
Q ss_pred EEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------CE
Q ss_conf 9998126860478863336540000147419969999968998478999998648668870899709-----------19
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g-----------~i 670 (1455)
++++|.+++|+. .. |+|+||++++|++++|+||+|||||||++.|.|-+++++|+|.++| .+
T Consensus 2 i~v~nlsk~y~~----~a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~i 74 (229)
T d3d31a2 2 IEIESLSRKWKN----FS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (229)
T ss_dssp EEEEEEEEECSS----CE---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred EEEEEEEEEECC----EE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCC
T ss_conf 899989999499----78---84337898799899999899982999999996476888788999567346521657405
Q ss_pred EEECCCCCCCCC-CHHHHHCCCC----CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 998488878886-8888853599----99978999999982322878403699753025797766608999999999881
Q 000511 671 AYVPQVPWILSG-TIRDNILFGK----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1455)
Q Consensus 671 ayv~Q~pwL~n~-TIreNIlfg~----~~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY 745 (1455)
+|++|+|-++.. ||+||+.|+. .-++++..++++...+.+..+ .....|||||||||+||||+.
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHH
T ss_conf 615121111746657788888776405538999999999825655575-----------895547999840140304344
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 399988871785320199999999994218466--8965999826831010-1898999939869994297788740
Q 000511 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 746 ~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~~ 819 (1455)
.+|+++|||||+|+||+.+.+.+++. +.. +. .+.|+|++||+++... .||+|++|++|++++.|+++++..+
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREM-LSV-LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHH-HHH-HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 36771443478767998999999999-999-9864796899974999999996999999979999998699999868
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=8.2e-36 Score=299.47 Aligned_cols=198 Identities=24% Similarity=0.325 Sum_probs=161.6
Q ss_pred EEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 9998126860478863336540000147419969999968998478999998648668870899709-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------- 668 (1455)
++++|.+++|+... ....+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 89990799948998--2089871337788499799998899998216557506887777662699999857688555123
Q ss_pred ----CEEEECCCCCCCCC-CHHHHHCCCC------CCC-HHHHHHHHH---HHCCHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf ----19998488878886-8888853599------999-789999999---82322878403699753025797766608
Q 000511 669 ----SIAYVPQVPWILSG-TIRDNILFGK------NYD-PQSYSETLK---ACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1455)
Q Consensus 669 ----~iayv~Q~pwL~n~-TIreNIlfg~------~~d-~~~Y~~vi~---ac~L~~Dl~~lp~GD~T~iGe~G~~LSGG 733 (1455)
.|+||+|+|-++.. ||+||+.++. .++ +++-+++.+ ...|.+.+ ....-..||||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGG 149 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGG 149 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHH----------HCCCHHHCCHH
T ss_conf 12555778804124176866888775788872247899999999999988762423455----------34880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCCCCCCCEEEEEECCEEEEEC
Q ss_conf 999999999881399988871785320199999999994218466--896599982683101018989999398699942
Q 000511 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1455)
Q Consensus 734 QkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G 811 (1455)
|||||+||||+..+|++++||||+|+||+.+++.|++- +.. +. .++|+|++||+++....||+|++|++|+|+++|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKK-LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEEC
T ss_conf 99999987565227888994687654698999999999-999-9984399999987888999869989999899999952
Q ss_pred CH
Q ss_conf 97
Q 000511 812 SS 813 (1455)
Q Consensus 812 ~~ 813 (1455)
+.
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred CC
T ss_conf 57
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-35 Score=296.12 Aligned_cols=202 Identities=28% Similarity=0.351 Sum_probs=169.4
Q ss_pred EEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-------------
Q ss_conf 9998126860478863336540000147419969999968998478999998648668870899709-------------
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------- 668 (1455)
++++|.+++|+.+.. ...+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~--~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECSSC--EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEEEEEEECCCCE--EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHH
T ss_conf 799827999699981--489861505788699799998999898889999875886366773288676852087555115
Q ss_pred ---CEEEECCCCCCCCC-CHHHHHCCC-----CCCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ---19998488878886-888885359-----9999--789999999823228784036997530257977666089999
Q 000511 669 ---SIAYVPQVPWILSG-TIRDNILFG-----KNYD--PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1455)
Q Consensus 669 ---~iayv~Q~pwL~n~-TIreNIlfg-----~~~d--~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqR 737 (1455)
+++||+|+|-+++. ||+|||.++ .+-+ +++..+.++.+.|.+-. ......||||||||
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QR 148 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQR 148 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH-----------HCCHHHCCHHHHHH
T ss_conf 5416643022522279964999999999984999899999999999976990355-----------48943499999989
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHH
Q ss_conf 999998813999888717853201999999999942184668--965999826831010-18989999398699942977
Q 000511 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1455)
Q Consensus 738 IaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~ 814 (1455)
|+||||+..+|+++++|||+++||+.+++.|++. +.. +.+ +.|+|++||+++... .||+|++|++|+|++.|+++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKD-INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHH-HHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 9986401058986874465565898885679999-999-98646978999838999999869999999799999987999
Q ss_pred HHHH
Q ss_conf 8874
Q 000511 815 DLAV 818 (1455)
Q Consensus 815 ~l~~ 818 (1455)
++..
T Consensus 227 ei~~ 230 (240)
T d3dhwc1 227 EVFS 230 (240)
T ss_dssp TTTC
T ss_pred HHHH
T ss_conf 9972
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.3e-36 Score=299.02 Aligned_cols=214 Identities=21% Similarity=0.302 Sum_probs=180.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18999899996699885202235997589299998899971999999983378899766999897389999587714638
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1455)
-++++||+.+| +|+||||+|++||.+||+|++|||||||+++|.|+. |.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCC-CCCCCHHHHCCCCCCC-C-HHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC----
Q ss_conf 9807777-7777588842859999-9-2779999999009999996899415416999999369999999998825----
Q 000511 1298 VVPQSPF-LFEGSLRDNLDPFHMN-D-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---- 1370 (1455)
Q Consensus 1298 ~IpQdp~-lf~gTIReNLdp~~~~-s-d~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~---- 1370 (1455)
+++|+.. .|..++.+|+..+... . .+.+.++++ .++++..++....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~ 146 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAG---------ALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 146 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHH---------HTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH---------HCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 451213577442098876410014668999999998---------65987676768445699889999999999851713
Q ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHH-HCEEEEEECCEEEEECCHHHHHCCCCCH
Q ss_conf ---99889985657698999899999999982-599479986268146741-0879899398598967945885029948
Q 000511 1371 ---SSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVEQGNPQTLLQDECSV 1445 (1455)
Q Consensus 1371 ---~~~ILiLDEaTS~lD~~Te~~i~~~i~~~-f~~~TvI~IaHRl~ti~~-~D~I~vld~GrivE~g~p~eLl~~~~s~ 1445 (1455)
+|+|++|||||++||+.+...+.+.|++. -+++|||+++|+++.+.. ||||++|++|++++.|+|+|++.++ .
T Consensus 147 ~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~--~ 224 (231)
T d1l7vc_ 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP--N 224 (231)
T ss_dssp TCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH--H
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH--H
T ss_conf 38998899971877778989999999999999867999999967799999979999999799899988999981886--7
Q ss_pred HHHH
Q ss_conf 9999
Q 000511 1446 FSSF 1449 (1455)
Q Consensus 1446 f~~l 1449 (1455)
+.+.
T Consensus 225 l~~~ 228 (231)
T d1l7vc_ 225 LAQA 228 (231)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-34 Score=288.74 Aligned_cols=201 Identities=24% Similarity=0.307 Sum_probs=170.2
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------ 668 (1455)
.++++|.+++|+. .++ |+|+||++++|++++|+||+|||||||+++|.|-.++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 6999978999899---998---8150668869979999989998299999999747667899779999993367752000
Q ss_pred --------------CEEEECCCCCCCCC-CHHHHHCCC----CCCCH----HHHHHHHHHHCCHHHHH-HCCCCCCCCCC
Q ss_conf --------------19998488878886-888885359----99997----89999999823228784-03699753025
Q 000511 669 --------------SIAYVPQVPWILSG-TIRDNILFG----KNYDP----QSYSETLKACTLDVDIS-LMVGGDMAYIG 724 (1455)
Q Consensus 669 --------------~iayv~Q~pwL~n~-TIreNIlfg----~~~d~----~~Y~~vi~ac~L~~Dl~-~lp~GD~T~iG 724 (1455)
+++|++|+|-+++. |++|||.++ ..+++ ++..++++.+.|.+... ..|
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-------- 147 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-------- 147 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------
T ss_conf 023517679997454489983323141101021365657876299989999999999998299524430682--------
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-CCCEEEEEE
Q ss_conf 7977666089999999998813999888717853201999999999942184668965999826831010-189899993
Q 000511 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMD 803 (1455)
Q Consensus 725 e~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~-~aD~Ii~l~ 803 (1455)
..|||||||||+||||+..+|++++||||+++||+.+.+.|++- +..-.-+++|+|++||+++.+. .||+|++|+
T Consensus 148 ---~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~vm~ 223 (258)
T d1b0ua_ 148 ---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 223 (258)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEEEEE
T ss_conf ---20567788898999998439987885245556887888899876-55410368833899489999998699999997
Q ss_pred CCEEEEECCHHHHHHC
Q ss_conf 9869994297788740
Q 000511 804 KGQVKWIGSSADLAVS 819 (1455)
Q Consensus 804 ~G~i~~~G~~~~l~~~ 819 (1455)
+|+|++.|+++|+..+
T Consensus 224 ~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 224 QGKIEEEGDPEQVFGN 239 (258)
T ss_dssp TTEEEEEECHHHHHHS
T ss_pred CCEEEEECCHHHHHHC
T ss_conf 9999998499999838
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.4e-34 Score=287.68 Aligned_cols=207 Identities=23% Similarity=0.349 Sum_probs=167.2
Q ss_pred CCCEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC---------
Q ss_conf 98449998126860478863336540000147419969999968998478999998648668870899709---------
Q 000511 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1455)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g--------- 668 (1455)
++..++++|.+++|+. ..+ |+|+||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 3 sd~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCEEEEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 5607999618999899---888---8302578889979999999998599999999678888803898424434466088
Q ss_pred -----CEEEECCCCCCCCC-CHHHHHCCCCC--CCHHHHHH-HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -----19998488878886-88888535999--99789999-99982322878403699753025797766608999999
Q 000511 669 -----SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSE-TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 -----~iayv~Q~pwL~n~-TIreNIlfg~~--~d~~~Y~~-vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIa 739 (1455)
.++|++|++-++.. |++||+.++.. .+.+..++ +-++..+...+... ......+||||||||++
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHH
T ss_conf 88874235567655457763699999988873278889999999999874176888-------75854338999999999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CCCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 999881399988871785320199999999994218466896599982683101-0189899993986999429778874
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 LARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l-~~aD~Ii~l~~G~i~~~G~~~~l~~ 818 (1455)
+|||+..+|++++||||+++||+...+.+++- +..-..+++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEV-IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 99999829987400398867999999999999-99999689989999588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.3e-34 Score=285.69 Aligned_cols=200 Identities=24% Similarity=0.311 Sum_probs=163.6
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC------------
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709------------
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g------------ 668 (1455)
.++++|.+.+|+. .++ |+|+||++++|++++++||+|||||||+++|.|.+++++|+|.++|
T Consensus 4 iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77 (254)
T ss_dssp EEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHH
T ss_conf 6999778999799---688---7121799889979999999998499999999779768873799999966405699999
Q ss_pred --CEEEECCCCCCCC-CCHHHHHCCCCCC-----------------CHHHHHH---HHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf --1999848887888-6888885359999-----------------9789999---999823228784036997530257
Q 000511 669 --SIAYVPQVPWILS-GTIRDNILFGKNY-----------------DPQSYSE---TLKACTLDVDISLMVGGDMAYIGE 725 (1455)
Q Consensus 669 --~iayv~Q~pwL~n-~TIreNIlfg~~~-----------------d~~~Y~~---vi~ac~L~~Dl~~lp~GD~T~iGe 725 (1455)
.|+|++|+|-++. -|++|||.+|... +++..++ +++...+... ...
T Consensus 78 ~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 146 (254)
T d1g6ha_ 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDR 146 (254)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTS
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCC
T ss_conf 833872577642478874232143013330345045665421353289999999999876196302-----------059
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CCCCEEEEEEC
Q ss_conf 97766608999999999881399988871785320199999999994218466896599982683101-01898999939
Q 000511 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDK 804 (1455)
Q Consensus 726 ~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l-~~aD~Ii~l~~ 804 (1455)
...+|||||||||++|||+..+|++++||||+++||+...+.|++. +..-.-+++|+|++||+++.+ ..||+|++|++
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 5356991888899999999759272324397656999999999999-999997899899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 86999429778874
Q 000511 805 GQVKWIGSSADLAV 818 (1455)
Q Consensus 805 G~i~~~G~~~~l~~ 818 (1455)
|+++..|+++|+.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-33 Score=281.80 Aligned_cols=202 Identities=20% Similarity=0.268 Sum_probs=167.6
Q ss_pred CEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
Q ss_conf 449998126860478863336540000147419969999968998478999998648668870899709-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g----------- 668 (1455)
.+|+++|.+.+|.. .++ |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++|
T Consensus 1 gaI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred CCEEEEEEEEEECC---EEE---ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 97899958999999---999---806256884897999999999999999999966988788879998672446839887
Q ss_pred -CEEEECCCCCCCCC-CHHHHHCCCC---CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf -19998488878886-8888853599---99978----999999982322878403699753025797766608999999
Q 000511 669 -SIAYVPQVPWILSG-TIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1455)
Q Consensus 669 -~iayv~Q~pwL~n~-TIreNIlfg~---~~d~~----~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIa 739 (1455)
.++||||++.++.. |++||+.|.. ..+.+ ..+++++.+.|.+.. .....+||||||||++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLL 143 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHCCHHHHHHHH
T ss_conf 21867500154687866778889899861799899999999999867978888-----------5045337998989999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998813999888717853201999999999942184668965999826831010-189899993986999429778874
Q 000511 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1455)
Q Consensus 740 LARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~ 818 (1455)
+|||+.++|++++||||+++||+...+.|++- +..-.-.++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~-i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKI-LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998659998873379889798999999999-99999659989999598999999699999998999999928999986
Q ss_pred C
Q ss_conf 0
Q 000511 819 S 819 (1455)
Q Consensus 819 ~ 819 (1455)
.
T Consensus 223 ~ 223 (238)
T d1vpla_ 223 R 223 (238)
T ss_dssp H
T ss_pred C
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.6e-33 Score=281.10 Aligned_cols=182 Identities=27% Similarity=0.381 Sum_probs=153.1
Q ss_pred CEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------CEEEECCCCCCCCC-CHHHHHCC
Q ss_conf 0000147419969999968998478999998648668870899709-----------19998488878886-88888535
Q 000511 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIAYVPQVPWILSG-TIRDNILF 690 (1455)
Q Consensus 623 L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g-----------~iayv~Q~pwL~n~-TIreNIlf 690 (1455)
+ |+||++. +++++++||+|||||||++.|.|..++++|+|.++| +|+||+|+|-++.. ||+|||.|
T Consensus 16 ~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 16 L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred E-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9-9999749-9799999799980999999997399989628999999988699899285225231443522015576665
Q ss_pred CCC-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHH
Q ss_conf 999-997----899999998232287840369975302579776660899999999988139998887178532019999
Q 000511 691 GKN-YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 765 (1455)
Q Consensus 691 g~~-~d~----~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~ 765 (1455)
|.. +++ ++-+++++.+.|.+.. ......|||||||||+||||+..+|++++||||+|+||+.+.
T Consensus 94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~-----------~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~ 162 (240)
T d2onka1 94 GLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHH
T ss_conf 323367788999999999863837566-----------579444899998999998777516770675286555887999
Q ss_pred HHHHHHHHCCCCCC--CCEEEEECCCCCCCC-CCCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 99999942184668--965999826831010-1898999939869994297788740
Q 000511 766 RWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1455)
Q Consensus 766 ~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~~ 819 (1455)
+.+++. +.. +.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 163 ~~i~~~-i~~-l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 163 GVLMEE-LRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHH-HHH-HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 999999-999-9874397699981899999996999999989999999069998329
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.3e-33 Score=277.69 Aligned_cols=190 Identities=23% Similarity=0.355 Sum_probs=157.6
Q ss_pred CEEEEEEEEEECCCCCCCEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCE
Q ss_conf 18999899996699885202235997589299998899971999999983378899766999897389999587714638
Q 000511 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1455)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1455)
.|+++|++++|+ .++|+|+||+|++||.+||+||+|||||||++++.|+++|++|+|.+||.++.. .|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939---928842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EEECCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 98077777777-58884285----9-999927799999990099999968994154169999993699999999988259
Q 000511 1298 VVPQSPFLFEG-SLRDNLDP----F-HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1455)
Q Consensus 1298 ~IpQdp~lf~g-TIReNLdp----~-~~~sd~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~ 1371 (1455)
++||++.++.. |+++|+.. + ...+++++.++++..++. +++..++ .||+|||||+++|||++++
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~LSgG~~qrv~ia~al~~~ 143 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL------DLKKKLG----ELSQGTIRRVQLASTLLVN 143 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC------CTTSBGG----GSCHHHHHHHHHHHHTTSC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC------CCCCCCC----CCCCCHHHHHHHHHHHHCC
T ss_conf 99501357888289999999997548863799999999874885------6301268----6897188889999988649
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCEEEEEEC
Q ss_conf 9889985657698999899999999982599479986268146741087989939
Q 000511 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1426 (1455)
Q Consensus 1372 ~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vld~ 1426 (1455)
|+++||||||++||+++...+++.|++..++.++++|+|+- .+.-||++.+|.+
T Consensus 144 ~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 98999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.7e-30 Score=254.18 Aligned_cols=196 Identities=20% Similarity=0.319 Sum_probs=160.6
Q ss_pred CEEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC-----------
Q ss_conf 449998126860478863336540000147419969999968998478999998648668870899709-----------
Q 000511 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1455)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g----------- 668 (1455)
..++++|++.+ ++|+++||+|++|++++|+||+|||||||+++|.|.. +.+|+|.++|
T Consensus 2 ~il~~~dv~~~----------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~ 70 (231)
T d1l7vc_ 2 IVMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKL 70 (231)
T ss_dssp EEEEEEEECCT----------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHH
T ss_pred EEEEEECCCCC----------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHH
T ss_conf 59999874157----------1555888899489899999899980999999994887-995599999999986998999
Q ss_pred --CEEEECCCCCC-CCCCHHHHHCCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf --19998488878-88688888535999--99789999999823228784036997530257977666089999999998
Q 000511 669 --SIAYVPQVPWI-LSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1455)
Q Consensus 669 --~iayv~Q~pwL-~n~TIreNIlfg~~--~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARA 743 (1455)
..+|.+|+.-. +..++.+++.++.. ...++.+++++.+.|+.. .+.+..+||||||||+++|||
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~a 139 (231)
T d1l7vc_ 71 ALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAV 139 (231)
T ss_dssp HHHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHH
T ss_pred HHHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHH
T ss_conf 864024512135774420988764100146689999999986598767-----------676844569988999999999
Q ss_pred HCC-------CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCCCCEEEEEECCEEEEECCHHH
Q ss_conf 813-------9998887178532019999999999421846689659998268310-10189899993986999429778
Q 000511 744 VYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSAD 815 (1455)
Q Consensus 744 lY~-------~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~-l~~aD~Ii~l~~G~i~~~G~~~~ 815 (1455)
+.+ +|++++||||+++||+...+.+++- +..-..+++|+|++||+++. ...||+|++|++|++++.|+.+|
T Consensus 140 l~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~-i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~e 218 (231)
T d1l7vc_ 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI-LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 218 (231)
T ss_dssp HHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH-HHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHH
T ss_pred HHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 98517133899889997187777898999999999-99998679999999677999999799999997998999889999
Q ss_pred HHH
Q ss_conf 874
Q 000511 816 LAV 818 (1455)
Q Consensus 816 l~~ 818 (1455)
+..
T Consensus 219 v~~ 221 (231)
T d1l7vc_ 219 VLT 221 (231)
T ss_dssp HSC
T ss_pred HHC
T ss_conf 818
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=4.1e-29 Score=245.77 Aligned_cols=182 Identities=23% Similarity=0.376 Sum_probs=146.1
Q ss_pred EEEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC--------CEEE
Q ss_conf 49998126860478863336540000147419969999968998478999998648668870899709--------1999
Q 000511 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 672 (1455)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g--------~iay 672 (1455)
.++++|.+++|+ .++ |+|+||++++|++++|+||+|||||||++.|.|.++|++|+|.++| +++|
T Consensus 2 ~lev~~ls~~y~----~~v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS----SEE---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred EEEEEEEEEEEC----CEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEE
T ss_conf 599998999939----928---8420889859989999999997199999999662056778899998962673670899
Q ss_pred ECCCCCCCCC-CHHHHHCC-----CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 8488878886-88888535-----99999789999999823228784036997530257977666089999999998813
Q 000511 673 VPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1455)
Q Consensus 673 v~Q~pwL~n~-TIreNIlf-----g~~~d~~~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~ 746 (1455)
+||++.++.. |++||+.+ +.+.+++...+.++...+. |+ .++-.+||||||||+++|||+..
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------~~~~~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-----------KKKLGELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-CC-----------CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9501357888289999999997548863799999999874885-63-----------01268689718888999998864
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEEEEC
Q ss_conf 9998887178532019999999999421846689659998268310101898999939
Q 000511 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804 (1455)
Q Consensus 747 ~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~ 804 (1455)
+|++++||||+++||+.+.+.+++. +.. +.+++++++++|+ +.+..||.+.+|.+
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~-l~~-~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKS-ILE-ILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHH-HHH-HHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 9989998686201699999999999-999-9867999999991-62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=2.5e-20 Score=175.38 Aligned_cols=304 Identities=10% Similarity=0.056 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99975969999999999999999999999999998336887246999999999999999999999999999999999999
Q 000511 270 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 349 (1455)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~ 349 (1455)
.+.+++.++...+..++..++....|++++.+++.+-.+.+...-+.+++.++.+.++..++.....+...+.+.++...
T Consensus 11 ~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 90 (319)
T d3b60a2 11 IAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMT 90 (319)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999999999999999999999998744687789999999999999976453354665443431000110
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999982499432477985599999996599999999999-999989999999999999886799999999999999
Q 000511 350 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSF-HDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 428 (1455)
Q Consensus 350 L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~~~-~~~w~~pi~i~i~~~lL~~~lG~a~l~g~~v~~~~~ 428 (1455)
+...+|+|.++.+....++.+.|++.+.++.|++.+.+..... .......+.++.+++.++..-...+++.++++++..
T Consensus 91 l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~ 170 (319)
T d3b60a2 91 MRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVS 170 (319)
T ss_dssp HHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 00477776501011110233322111112121210000111112001123344566888887652002102566899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999646999981815999999999999999999999999999999998987
Q 000511 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 508 (1455)
Q Consensus 429 ~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~~we~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 508 (1455)
.+..+..++..+.+++..+..++..+...|.++|++.||.+++|+.+.++.++..++..+...+.....+..........
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (319)
T d3b60a2 171 IAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIA 250 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 98876666877878988764456778877762487235311101024566666531356778888877774064010000
Q ss_pred HHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999--9999999881998777589999999999999999999999999999999999999718998
Q 000511 509 TLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 573 (1455)
Q Consensus 509 ~~~~--~~tf~~~~~~~~~L~~~~~Ft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 573 (1455)
.+.. +..++.|....+.++++..++.+.+...+..|+..++..++.+.++.+|.+||.++|+.|+
T Consensus 251 ~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 251 SLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0023799999999998099789999999999999999999999999999999999999999966998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.92 E-value=1.7e-19 Score=168.76 Aligned_cols=313 Identities=15% Similarity=0.162 Sum_probs=237.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89886314489999999999999999841344433210245787887650368999999999999999999999999999
Q 000511 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSL 964 (1455)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 964 (1455)
++.|.+...+.... .+++.++..+.....++.++..+|.............+.+++.++.++..++..++.+.....+.
T Consensus 7 l~~~~~~~k~~l~~-~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (319)
T d3b60a2 7 LWPTIAPFKAGLIV-AGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSG 85 (319)
T ss_dssp HHHHHGGGHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999-99999999999999999999999987446877899999999999999764533546654434310
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999988448643324678226999997026431000269999999999877786646987878999999999
Q 000511 965 RAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044 (1455)
Q Consensus 965 ~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~~~~~pl 1044 (1455)
+...++++++++++++.|+++|++.++|++++|+++|++.+...+...+...+..++..++.++.+.+..|.++++.+..
T Consensus 86 ~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~ 165 (319)
T d3b60a2 86 KVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 165 (319)
T ss_dssp HHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 00110004777765010111102333221111121212100001111120011233445668888876520021025668
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999998730514767987314648987529289999999999999999999999999999999
Q 000511 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLR 1124 (1455)
Q Consensus 1045 ~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~ 1124 (1455)
.+++..+...+.+..+...+...+..+...+...|.++|+.+||+|++|+.+.+++.+..+...+..........+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (319)
T d3b60a2 166 APIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPI 245 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999988766668778789887644567788777624872353111010245666665313567788888777740640
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999997505877777631999999999999999999999999999999989999999740377211
Q 000511 1125 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202 (1455)
Q Consensus 1125 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~~~~~E~ 1202 (1455)
..++..+...++... +.. ....+.++.|.+...+.+...+..++..+...+.+++++..|.+|+.++.|.|+|+
T Consensus 246 ~~~~~~~~~~~~l~~---g~~-~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E~ 319 (319)
T d3b60a2 246 IQLIASLALAFVLYA---ASF-PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK 319 (319)
T ss_dssp HHHHHHHHHHHHHHH---HHS-SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 100000023799999---999-99809978999999999999999999999999999999999999999996699899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.91 E-value=2.2e-19 Score=167.82 Aligned_cols=306 Identities=13% Similarity=0.121 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999975969999999999999999999999999998336887--24-6----999999999999999999999999999
Q 000511 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HL-D----GYVLAIALGLTSILKSFFDTQYSFHLS 340 (1455)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~l~~~~~--~~-~----g~~l~~~l~~~~~~~~~~~~~~~~~~~ 340 (1455)
...+.|++.++...+..++..++....|++++.+++.+.++.. .. . .+.++.++++..+...++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999824994324779855999999965999999999-99999989999999999999886799999
Q 000511 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVS 419 (1455)
Q Consensus 341 r~~~~ir~~L~~~Iy~K~L~l~~~~~~~~~~g~i~nLms~D~~~i~~~~~-~~~~~w~~pi~i~i~~~lL~~~lG~a~l~ 419 (1455)
+.+.+++..+...+|+|.++++....++.+.|++.+.++.|++.+.+... .+...+...+.+++++..+...-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999646999981815999999999999999999999999999
Q 000511 420 GLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499 (1455)
Q Consensus 420 g~~v~~~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~~we~~~~~~i~~~R~~El~~~~~~~~~~~~ 499 (1455)
.++++.+...+...+.++..+..++..+..++..+.+.|.++|++.||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999898799999--999999881998777589999999999999999999999999999999999999718998
Q 000511 500 CVFFWATTPTLFSL--FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 573 (1455)
Q Consensus 500 ~~~~~~~~~~~~~~--~tf~~~~~~~~~L~~~~~Ft~l~l~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 573 (1455)
..........+... ..++.+....+.++++.+++.+.++..+..|+..++..++.+.++.+|++||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=9.2e-20 Score=170.79 Aligned_cols=313 Identities=15% Similarity=0.207 Sum_probs=227.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_conf 78988631448999999999999999984134443321024578788765--03689-----999999999999999999
Q 000511 884 VYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS--TSFYL-----VVLCIFCMFNSFLTLVRA 956 (1455)
Q Consensus 884 ~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~--~~~~l-----~~~~~l~~~~~~~~~~~~ 956 (1455)
.+..|++...+.....+ ++.++..+.....++.++..+|.....+.... ...+. ..+.++.++..++...+.
T Consensus 4 rl~~~~k~~k~~~~~~~-~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 82 (323)
T d2hyda2 4 RYLQFVKPYKYRIFATI-IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQ 82 (323)
T ss_dssp HHHHHHGGGHHHHHHHH-HHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999-99999999999999999999999862677421556899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999884486433246782269999970264310002699999999998777866469878789
Q 000511 957 FSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVF 1036 (1455)
Q Consensus 957 ~~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~ 1036 (1455)
+.....+.+...++++++++++++.|++||++.++|++++|+++|+..+++.+...+...+..++..++.++.+.+..|.
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (323)
T d2hyda2 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998556778888766540233210001222110001111332100111345420111466533465440000146
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999987305147679873146489875292899999999999999999999999
Q 000511 1037 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116 (1455)
Q Consensus 1037 ~~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~ 1116 (1455)
++++.++..+++..+...+.+..++..+...+..+.+.+++.|+++|+.+||+|++|+.+.+++.+..+...+.......
T Consensus 163 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~ 242 (323)
T d2hyda2 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (323)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHH
T ss_conf 88899998877777776412333202677898999999787887559702346764111002330223111101567765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999997505877777631999999999999999999999999999999989999999740
Q 000511 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1455)
Q Consensus 1117 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~li~~~~~~e~~~~sv~Ri~~~~ 1196 (1455)
...+.......+..+...++....... ...+..+.|.+...+.+...+..++..+...+.++.....|.+|+.++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elL 318 (323)
T d2hyda2 243 WNAYSFAAINTVTDIGPIIVIGVGAYL----AISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHH----HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 200001111101205589999999999----9849988999999999999999999999999999999999999999997
Q ss_pred CCCCC
Q ss_conf 37721
Q 000511 1197 DVPQE 1201 (1455)
Q Consensus 1197 ~~~~E 1201 (1455)
|.++|
T Consensus 319 d~e~e 323 (323)
T d2hyda2 319 DEDYD 323 (323)
T ss_dssp TCCCS
T ss_pred CCCCC
T ss_conf 79998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.45 E-value=6.4e-15 Score=131.99 Aligned_cols=172 Identities=11% Similarity=0.036 Sum_probs=118.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998899971999999983378899766999897389999587714638980777777775888428599999277999
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIReNLdp~~~~sd~ei~~ 1327 (1455)
||+|+|++|||||||++.+.+.+++..|.+.+++.+....+.+.........++.+.++..+...+....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC--CHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999900999999689941541699999936999999999882599889985657698--999899999999982599479
Q 000511 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV--DAQTASILQNAISSECKGMTV 1405 (1455)
Q Consensus 1328 aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~l--D~~Te~~i~~~i~~~f~~~Tv 1405 (1455)
+.+...- .+++|++|+.++++++.++|+++++||++... +.+....+.+.+++ .++|+
T Consensus 74 --------------~~~~~~~----~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~i 133 (178)
T d1ye8a1 74 --------------GVNVQYF----EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNV 133 (178)
T ss_dssp --------------EECHHHH----HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEE
T ss_pred --------------HCCCCHH----HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEE
T ss_conf --------------0376256----653201378999999740997423027773100457999999987505--79789
Q ss_pred EEECCCHHHHHHHCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHH
Q ss_conf 98626814674108798993985989679458850299489999985
Q 000511 1406 ITIAHRISTVLNMDEILILDHGHLVEQGNPQTLLQDECSVFSSFVRA 1452 (1455)
Q Consensus 1406 I~IaHRl~ti~~~D~I~vld~GrivE~g~p~eLl~~~~s~f~~l~~~ 1452 (1455)
|.++|+.+....+|++..+++|++++.++. +.+..+.+.++.
T Consensus 134 l~~~h~~~~~~~~~~i~~~~~~~i~~v~~~-----nrd~~~~~i~~~ 175 (178)
T d1ye8a1 134 VATIPIRDVHPLVKEIRRLPGAVLIELTPE-----NRDVILEDILSL 175 (178)
T ss_dssp EEECCSSCCSHHHHHHHTCTTCEEEECCTT-----TTTTHHHHHHHH
T ss_pred EEEECCHHHHHHHCEEEEEECCEEEEECCC-----CHHHHHHHHHHH
T ss_conf 999744778986365998719999998996-----478899999999
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.13 E-value=7.7e-12 Score=107.29 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=97.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC--EEEECC-----------CCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 99999689984789999986486688708997091--999848-----------88788868888853599999789999
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQ-----------VPWILSGTIRDNILFGKNYDPQSYSE 701 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~--iayv~Q-----------~pwL~n~TIreNIlfg~~~d~~~Y~~ 701 (1455)
-++|+||+|||||||++.++|++++..|.+...+. ..+..| .+.+.+.+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC--HHHHHHHHHHHHCCCCCC
Q ss_conf 999823228784036997530257977666089999999998813999888717853201--999999999942184668
Q 000511 702 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAIMGPHML 779 (1455)
Q Consensus 702 vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD--~~t~~~I~~~~i~g~ll~ 779 (1455)
..+...-..+++|+++|.+++++...+++++++|||-...+ ......+.+. + .-.
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~-l---~~~ 129 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-M---HDP 129 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-H---TCT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-H---CCC
T ss_conf -------------------30376256653201378999999740997423027773100457999999987-5---057
Q ss_pred CCEEEEECCCCCCCCCCCEEEEEECCEEEEECC
Q ss_conf 965999826831010189899993986999429
Q 000511 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1455)
Q Consensus 780 ~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~ 812 (1455)
++|+|+++|+....+.+|++..+++|++.+.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=4.4e-10 Score=93.22 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHCEEEEE
Q ss_conf 9993699999999988----25998899856576989998999999999825-994799862681467410879899
Q 000511 1353 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1424 (1455)
Q Consensus 1353 ~LS~GQrQll~LARAl----L~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f-~~~TvI~IaHRl~ti~~~D~I~vl 1424 (1455)
.+|||||.++++|-.+ ..++++++||||++++|+.+...+.+.|++.. .++-+|+|||+...+..+|+++..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=1.4e-07 Score=73.06 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCEEEE--EEC
Q ss_conf 9993699999999988----2599889985657698999899999999982599479986268146741087989--939
Q 000511 1353 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI--LDH 1426 (1455)
Q Consensus 1353 ~LS~GQrQll~LARAl----L~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~v--ld~ 1426 (1455)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C
Q ss_conf 8
Q 000511 1427 G 1427 (1455)
Q Consensus 1427 G 1427 (1455)
|
T Consensus 299 g 299 (308)
T d1e69a_ 299 G 299 (308)
T ss_dssp S
T ss_pred C
T ss_conf 9
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=7.6e-07 Score=67.23 Aligned_cols=76 Identities=32% Similarity=0.338 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHC----CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCEEEE--
Q ss_conf 766608999999999881----39998887178532019999999999421846689659998268310101898999--
Q 000511 728 VNLSGGQRARLALARAVY----HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV-- 801 (1455)
Q Consensus 728 ~~LSGGQkqRIaLARAlY----~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~-- 801 (1455)
..+|+|||+...++.... ..+.++++|||=++|++.-.+.+.+. +.. ..++.-+|++||+..++..+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~-l~~-~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-LKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-HHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCCEEEEE
T ss_conf 102577766777776655654226744554320335797899999999-998-554887999989889997324289999
Q ss_pred EECC
Q ss_conf 9398
Q 000511 802 MDKG 805 (1455)
Q Consensus 802 l~~G 805 (1455)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EECC
T ss_conf 9699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.14 E-value=5.3e-06 Score=60.48 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHH--H--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCCCCEEEEE
Q ss_conf 7666089999999998--8--1399988871785320199999999994218466-896599982683101018989999
Q 000511 728 VNLSGGQRARLALARA--V--YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVM 802 (1455)
Q Consensus 728 ~~LSGGQkqRIaLARA--l--Y~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll-~~kTvIlvTh~~~~l~~aD~Ii~l 802 (1455)
..||||||.+++||=. + +..+++++||||.++||+.....+.+. +.. +. ++.-+|++||+++.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~-~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRR-HRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHH-HCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999-728998899995878999736617999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.60 E-value=0.0017 Score=40.43 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=18.0
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 1996999996899847899999864866887
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 661 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~~~~ 661 (1455)
..+.-+.|+|++||||||+++++++++++..
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8378889994035662578999865301456
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.54 E-value=0.0027 Score=38.74 Aligned_cols=134 Identities=19% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCEEEECCCCCCCCC-CHHHHHCCCCCCCHHH
Q ss_conf 54000014741996999996899847899999864-866887089970919998488878886-8888853599999789
Q 000511 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG-EMMLTHGSIHASGSIAYVPQVPWILSG-TIRDNILFGKNYDPQS 698 (1455)
Q Consensus 621 ~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allG-e~~~~~G~v~~~g~iayv~Q~pwL~n~-TIreNIlfg~~~d~~~ 698 (1455)
++=.|+++ . +++++|+||+.|||||+|+++.= .+-...|.. +...-+-++.-..|+.. -..|++.-|.
T Consensus 26 ~VpNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~-vpA~~~~i~~~d~I~~~~~~~d~~~~~~------ 95 (224)
T d1ewqa2 26 FVPNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSF-VPAEEAHLPLFDGIYTRIGASDDLAGGK------ 95 (224)
T ss_dssp CCCEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCSEEEEECCC------CC------
T ss_pred EECCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE-EECCCEEEEECCEEEEEECCCCCCCCCC------
T ss_conf 54555884--7-867999788734532345565899999852504-6137519940116999987776023783------
Q ss_pred HHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999982322878403699753025797766608999999999881399988871785320199999999994218466
Q 000511 699 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778 (1455)
Q Consensus 699 Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll 778 (1455)
+.=...-+|++-.----.+..++|+||++++=|+.-+..+....+.. +.
T Consensus 96 ------------------------------StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~-L~ 144 (224)
T d1ewqa2 96 ------------------------------STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEA-LH 144 (224)
T ss_dssp ------------------------------SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHH-HH
T ss_pred ------------------------------CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHH-HH
T ss_conf ------------------------------07898678898775028977278554545686233200258888888-86
Q ss_pred C-CCEEEEECCCCCCCCC
Q ss_conf 8-9659998268310101
Q 000511 779 L-QKTRILCTHNVQAISA 795 (1455)
Q Consensus 779 ~-~kTvIlvTh~~~~l~~ 795 (1455)
+ +.+++++||..+....
T Consensus 145 ~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 145 ERRAYTLFATHYFELTAL 162 (224)
T ss_dssp HHTCEEEEECCCHHHHTC
T ss_pred HCCCCEEEEEECHHHHHH
T ss_conf 237613786520233322
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.46 E-value=0.0084 Score=34.81 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=68.5
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 199699999689984789999986486688708-9970919998488878886888885359999978999999982322
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~-v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~~vi~ac~L~ 709 (1455)
.++-++.|.||+||||||.+.+++.+++....+ +.+..++-|. -|+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~--~~~------------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD--IDG------------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC--CSS-------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CCC-------------------------------
T ss_conf 41054898767877744779998666257874699962674345--678-------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 87840369975302579776660899999999988139998887178532019999999999421846689659998268
Q 000511 710 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789 (1455)
Q Consensus 710 ~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~ 789 (1455)
--++.+.+ ..|+.---+|..++=++|||++.+|+- |+.+++..++.+..| +.|+-.-|.
T Consensus 203 --------~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~tG-----hlV~tTlHa 261 (401)
T d1p9ra_ 203 --------IGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASLTG-----HLVMSTLHT 261 (401)
T ss_dssp --------SEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHTT-----CEEEEEECC
T ss_pred --------CCEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHHHCC-----CEEEEEECC
T ss_conf --------87026558-----767799999999984138889845768---759999999997249-----858998336
Q ss_pred CCCC
Q ss_conf 3101
Q 000511 790 VQAI 793 (1455)
Q Consensus 790 ~~~l 793 (1455)
-+-.
T Consensus 262 ~~a~ 265 (401)
T d1p9ra_ 262 NTAV 265 (401)
T ss_dssp SSSH
T ss_pred CCHH
T ss_conf 7667
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.42 E-value=0.017 Score=32.43 Aligned_cols=154 Identities=10% Similarity=0.116 Sum_probs=75.2
Q ss_pred CEECEEE--ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHH
Q ss_conf 0000147--41996999996899847899999864866887089970919998488878886888885359999978999
Q 000511 623 LNQVSLC--LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYS 700 (1455)
Q Consensus 623 L~~isl~--i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~ 700 (1455)
|+.+ +. +++|+++.|.|+.|||||+|+.-++-+.....+ .+.|.+-+ ...+.+.
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----------------~~~~~~~ 70 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----------------ESRAQLL 70 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----------------SCHHHHH
T ss_pred HHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----------------CCHHHHH
T ss_conf 9884-5689869849999918999999999999999987232------44112126-----------------7999999
Q ss_pred HHHHHHCCHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCEEEECCCCCCC---CHHHHHHHHHHHHCC
Q ss_conf 99998232287840-36997530257977666089999999998813-99988871785320---199999999994218
Q 000511 701 ETLKACTLDVDISL-MVGGDMAYIGEKGVNLSGGQRARLALARAVYH-GSDIYMLDDVLSAV---DAQVARWILSNAIMG 775 (1455)
Q Consensus 701 ~vi~ac~L~~Dl~~-lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~-~~~i~lLDD~~SaL---D~~t~~~I~~~~i~g 775 (1455)
+ .++.+..|... ...|....+........ .+...-.+.+++.. ++++++.|...... +..-....... +..
T Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~-l~~ 146 (242)
T d1tf7a2 71 R--NAYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG-VTG 146 (242)
T ss_dssp H--HHHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH-HHH
T ss_pred H--HHHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH-HHH
T ss_conf 9--99982998699854586179973000101-7999999999998408853322043143048999999999999-999
Q ss_pred CCC-CCCEEEEECCCCC-----------CCCCCCEEEEEEC
Q ss_conf 466-8965999826831-----------0101898999939
Q 000511 776 PHM-LQKTRILCTHNVQ-----------AISAADMVVVMDK 804 (1455)
Q Consensus 776 ~ll-~~kTvIlvTh~~~-----------~l~~aD~Ii~l~~ 804 (1455)
-+. .+.|++++.|... .-..||-|+.++.
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99986983999985675125544577640464216999998
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.26 E-value=0.0079 Score=35.03 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=32.7
Q ss_pred CEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECC
Q ss_conf 00001474199699999689984789999986486688708997091999848
Q 000511 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 675 (1455)
Q Consensus 623 L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q 675 (1455)
|++..--+.+|++++|.|++|+|||+|+.-++-.+....| .++.|.+=
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~ 72 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAML 72 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEES
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEE
T ss_conf 8887469789808999947999799999999972655336-----63457640
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0069 Score=35.48 Aligned_cols=133 Identities=13% Similarity=0.120 Sum_probs=65.8
Q ss_pred CCCEECEEEECCCCEEEEECCCCCCHHHHHHHHH--CCCCCCCCEEEECCCEEEECCCCCCCC-CCHHHHHCCCCCCCHH
Q ss_conf 5400001474199699999689984789999986--486688708997091999848887888-6888885359999978
Q 000511 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL--GEMMLTHGSIHASGSIAYVPQVPWILS-GTIRDNILFGKNYDPQ 697 (1455)
Q Consensus 621 ~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~all--Ge~~~~~G~v~~~g~iayv~Q~pwL~n-~TIreNIlfg~~~d~~ 697 (1455)
++=.|+++. +.+...+|+||+.|||||+|+++. --|.. .|.. +...-+-.+--..|+. -...|++.-|.
T Consensus 30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq-~G~~-VpA~~a~~~~~d~I~~~~~~~d~~~~~~----- 101 (234)
T d1wb9a2 30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGSY-VPAQKVEIGPIDRIFTRVGAADDLASGR----- 101 (234)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTCC-BSSSEEEECCCCEEEEEEC--------------
T ss_pred CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCE-EECCCEECCCCHHHEEEECCCCCCCCCH-----
T ss_conf 264057988-9953999954673136899998799999987-2976-7417666134420234874675343653-----
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999998232287840369975302579776660899999999988139998887178532019999999999421846
Q 000511 698 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777 (1455)
Q Consensus 698 ~Y~~vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~~t~~~I~~~~i~g~l 777 (1455)
+-=...-+|++-.----.+..++|+||++++=++.-+..+....+.. +
T Consensus 102 -------------------------------S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~-l 149 (234)
T d1wb9a2 102 -------------------------------STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAEN-L 149 (234)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHH-H
T ss_pred -------------------------------HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-H
T ss_conf -------------------------------18999999999999745466088532223587745666789876454-3
Q ss_pred -CCC-CEEEEECCCCCCC
Q ss_conf -689-6599982683101
Q 000511 778 -MLQ-KTRILCTHNVQAI 793 (1455)
Q Consensus 778 -l~~-kTvIlvTh~~~~l 793 (1455)
.+. ..++++||..+..
T Consensus 150 ~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 150 ANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHTTCCEEEEECSCGGGG
T ss_pred HCCCCCEEEEECCHHHHH
T ss_conf 204544289852468776
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.16 E-value=0.024 Score=31.15 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC----CCCCCEEEECCCEEEECCCCCCCCCCHHHHHC-CCCCCCHHHHHHHHHH
Q ss_conf 199699999689984789999986486----68870899709199984888788868888853-5999997899999998
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEM----MLTHGSIHASGSIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKA 705 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~----~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIl-fg~~~d~~~Y~~vi~a 705 (1455)
.+|+++.|.|+.|+|||+|+..+.-.+ +...+...-.+++.|++-+.- ...+++.+. .+..++...+......
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~~ 104 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVADG 104 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 5895899992899989999999999997699721112357873689851234--99999999998623686665312333
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHHHHHCCCCCC-
Q ss_conf 2322878403699753025797766608999999999881399988871785320-----1999999999942184668-
Q 000511 706 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV-----DAQVARWILSNAIMGPHML- 779 (1455)
Q Consensus 706 c~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaL-----D~~t~~~I~~~~i~g~ll~- 779 (1455)
+...+. .+...... -....-.+.+ -..+++++++|-..... |....+.+++. +.. +.+
T Consensus 105 ------~~~~~~-----~~~~~~~~--~~~~~~~~~~-~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~-la~~ 168 (274)
T d1nlfa_ 105 ------LLIQPL-----IGSLPNIM--APEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEA-IAAD 168 (274)
T ss_dssp ------EEECCC-----TTSCCCTT--SHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHH-HHHH
T ss_pred ------CEECCC-----CCCCCHHH--HHHHHHHHHH-HCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHH-HHHC
T ss_conf ------232145-----67420357--8999999887-526765896281354226652322568999988-777-7644
Q ss_pred -CCEEEEECCC
Q ss_conf -9659998268
Q 000511 780 -QKTRILCTHN 789 (1455)
Q Consensus 780 -~kTvIlvTh~ 789 (1455)
+.|+|++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.87 E-value=0.0039 Score=37.49 Aligned_cols=34 Identities=38% Similarity=0.529 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9969999968998478999998648668870899
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~ 665 (1455)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.053 Score=28.38 Aligned_cols=121 Identities=19% Similarity=0.171 Sum_probs=60.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 96999996899847899999864866887089970919998488878886888885359999978999999982322878
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDI 712 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~~vi~ac~L~~Dl 712 (1455)
|=-++++|++|+|||||+++++|+-.. .++..| ++.++.+.....+. +
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~------------~~~~~~----~~~~~~~~~~~~~~---------------~- 48 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAA------------IVTDIA----GTTRDVLREHIHID---------------G- 48 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCS------------CCCSST----TCCCSCEEEEEEET---------------T-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCE------------EEECCC----CCCCCEEEEEEECC---------------C-
T ss_conf 989999899999899999999688866------------751246----64220476532026---------------8-
Q ss_pred HHCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCC----CCHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 403699753025797--76660899999999988139998887178532----019999999999421846689659998
Q 000511 713 SLMVGGDMAYIGEKG--VNLSGGQRARLALARAVYHGSDIYMLDDVLSA----VDAQVARWILSNAIMGPHMLQKTRILC 786 (1455)
Q Consensus 713 ~~lp~GD~T~iGe~G--~~LSGGQkqRIaLARAlY~~~~i~lLDD~~Sa----LD~~t~~~I~~~~i~g~ll~~kTvIlv 786 (1455)
.....+...| ..-.+.++..+..+...|.++++++++-..+. -+.+....+... ...++.+|+|
T Consensus 49 -----~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~iilv 118 (161)
T d2gj8a1 49 -----MPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR-----LPAKLPITVV 118 (161)
T ss_dssp -----EEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH-----SCTTCCEEEE
T ss_pred -----CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-----CCCCCCEEEC
T ss_conf -----235413653212246520247899999998741332011025654203455544455542-----0141010204
Q ss_pred CCCCCCCCC
Q ss_conf 268310101
Q 000511 787 THNVQAISA 795 (1455)
Q Consensus 787 Th~~~~l~~ 795 (1455)
-+..+..+.
T Consensus 119 ~NK~Dl~~~ 127 (161)
T d2gj8a1 119 RNKADITGE 127 (161)
T ss_dssp EECHHHHCC
T ss_pred CCHHHHHHH
T ss_conf 654443355
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.062 Score=27.86 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.9
Q ss_pred EECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 75892999988999719999999833
Q 000511 1243 IEGGTQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1243 I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
+.||+.+-|+|++|+||||++..+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.19 E-value=0.012 Score=33.52 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++|+|++|+|||||+++++|+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.04 E-value=0.012 Score=33.71 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8929999889997199999998337889976699
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1455)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.93 E-value=0.0031 Score=38.23 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9969999968998478999998648668870899
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~ 665 (1455)
+|+.++++|++|.|||||+++|+|+.....|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 3564999877873487898751517676403555
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.87 E-value=0.06 Score=27.96 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996899847899999864
Q 000511 635 LVAVIGEVGSGKSSLLNSILG 655 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allG 655 (1455)
+++++|++||||||+.+.|..
T Consensus 4 lIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.0099 Score=34.26 Aligned_cols=28 Identities=50% Similarity=0.617 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999968998478999998648668870
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G 662 (1455)
-++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.045 Score=28.93 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=46.3
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 41996999996899847899999864866887089970919998488878886888885359999978999999982322
Q 000511 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709 (1455)
Q Consensus 630 i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~~vi~ac~L~ 709 (1455)
-++-++++++|+.||||||+.+.++.+. |.+.+ +++. +. .++++.+.+
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i-------~~D~----------~~--------~~~~~~~~~--- 58 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHV-------NRDT----------LG--------SWQRCVSSC--- 58 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEE-------EHHH----------HC--------SHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC----CCEEE-------CHHH----------HH--------HHHHHHHHH---
T ss_conf 9999899998999998999999999765----97897-------6077----------77--------888999999---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHCCCCCEEEEC
Q ss_conf 8784036997530257977666089999-99999881399988871
Q 000511 710 VDISLMVGGDMAYIGEKGVNLSGGQRAR-LALARAVYHGSDIYMLD 754 (1455)
Q Consensus 710 ~Dl~~lp~GD~T~iGe~G~~LSGGQkqR-IaLARAlY~~~~i~lLD 754 (1455)
-..+..|....+. +.+++-.||.+ +.+|+..-.+..++.+|
T Consensus 59 --~~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 59 --QAALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp --HHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred --HHHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf --9999779995551--76799999999999998558887999948
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.67 E-value=0.02 Score=31.76 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.7
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4199699999689984789999986486
Q 000511 630 LPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 630 i~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
+|+|+++.|.|+.|||||+|..-++-..
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5588799998589898899999999986
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.54 E-value=0.02 Score=31.82 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=22.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 2999988999719999999833788997669998
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1455)
+.|.|+|++||||||+.+.|.+-. .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEEC
T ss_conf 799998999999999999999957---9979960
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.50 E-value=0.013 Score=33.22 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=32.1
Q ss_pred EEEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 997589299998899971999999983378899766999
Q 000511 1241 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279 (1455)
Q Consensus 1241 l~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1279 (1455)
..++.+..+-|+|+|||||||++++|++.+++..=-|+|
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 999837888999403566257899986530145623311
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.42 E-value=0.011 Score=33.91 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999968998478999998648668
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
|.+++|+||+||||||+.+.+..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.12 Score=25.66 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998478999998648668
Q 000511 636 VAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
..+.||.|+||||+..+++-++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899999889999999976227
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.015 Score=32.70 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCC
Q ss_conf 9999968998478999998648668870899709199984888788868
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGT 683 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~T 683 (1455)
+++|.|++||||||+.+.|-..+....+ +.++..++++.+.....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~~ 126 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPNQ 126 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCCH
T ss_conf 9999689999876899999999730468----99659995215689845
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.20 E-value=0.013 Score=33.29 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+|++|+|||||+++|+|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.16 E-value=0.015 Score=32.87 Aligned_cols=24 Identities=50% Similarity=0.753 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
-++++|.+|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.01 E-value=0.12 Score=25.41 Aligned_cols=173 Identities=15% Similarity=0.224 Sum_probs=80.2
Q ss_pred CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHC-CCCCCCCEEEECCEECCCCCHHHHHCCC-EEEECCCCCCCCCHHH
Q ss_conf 2022359975892999988999719999999833-7889976699989738999958771463-8980777777775888
Q 000511 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-LTPICGGQILVDGLNIINTPVRDLRGRF-AVVPQSPFLFEGSLRD 1312 (1455)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r-l~~~~~G~I~IDG~di~~i~~~~lR~~i-~~IpQdp~lf~gTIRe 1312 (1455)
.|+++.--+.|||.+-|.|++|+||||++.-+.. +..-..-.+.+-. -..+.+.+..++ +...+-+.--
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~~~~~~~~~~------ 94 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIGLHNRVRLRQ------ 94 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHHHHTTCCGGG------
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHHHHHCCCCHH------
T ss_conf 688874697898089999479997999999999726553366345764---01111357769999864587101------
Q ss_pred HCCCCCCCCHHHHHHHHHHHCHHHHHHHC-CCCHH-HHCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCC-----C
Q ss_conf 42859999927799999990099999968-99415-4169999993699999999988--25998899856576-----9
Q 000511 1313 NLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF-VKESGISFSVGQRQLICLARAL--LKSSKVLCLDECTA-----N 1383 (1455)
Q Consensus 1313 NLdp~~~~sd~ei~~aL~~~~L~~~i~~l-gLdt~-i~e~G~~LS~GQrQll~LARAl--L~~~~ILiLDEaTS-----~ 1383 (1455)
.+..-...++...+.+..+.. +-+.. ..+........ ..+...+.. -.+++++++|=.+- +
T Consensus 95 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~ 164 (277)
T d1cr2a_ 95 --------SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASG 164 (277)
T ss_dssp --------CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC------
T ss_pred --------HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCC
T ss_conf --------012222214567788898874035214662143310689--9999865432136762599705421203465
Q ss_pred CCHH--HHHHHHHHHHHHC--CCCEEEEECCCH----------------HHH-------HHHCEEEEEEC
Q ss_conf 8999--8999999999825--994799862681----------------467-------41087989939
Q 000511 1384 VDAQ--TASILQNAISSEC--KGMTVITIAHRI----------------STV-------LNMDEILILDH 1426 (1455)
Q Consensus 1384 lD~~--Te~~i~~~i~~~f--~~~TvI~IaHRl----------------~ti-------~~~D~I~vld~ 1426 (1455)
-+.. .-..+.+.++... .+|+|++++|=- +.+ ..+|.++.+..
T Consensus 165 ~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 4430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.054 Score=28.31 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=34.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 19969999968998478999998648668870899709199984888788868888853599999789999
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 701 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~~ 701 (1455)
..+.+.++.|+.||||||+.+.|...+.. ..++ ..++...........+.++..+....
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFLD--------GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEEE--------GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEC--------HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----8310--------36645998853002476300113477
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.00033 Score=46.11 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=25.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 999988999719999999833788997669998973
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d 1283 (1455)
.|.|+|+.|+|||||+..+.+.+....+.+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~ 38 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTE 38 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf 999988999719999999999999779979999845
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.86 E-value=0.016 Score=32.55 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
+|+|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.83 E-value=0.14 Score=24.90 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=62.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCH
Q ss_conf 41996999996899847899999864866887089970919998488878886888885359999978999999982322
Q 000511 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709 (1455)
Q Consensus 630 i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~~vi~ac~L~ 709 (1455)
+++..-+.+.||.|+|||++.+++.+++.. .+-+++ +
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~------------------------------~---- 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK------------------------------G---- 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC------------------------------H----
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE------------------------------H----
T ss_conf 998875788789987630477887877189---------479988------------------------------7----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCH---------HHHHHHHHH---HHCCCC
Q ss_conf 87840369975302579776660899999999988139998887178532019---------999999999---421846
Q 000511 710 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA---------QVARWILSN---AIMGPH 777 (1455)
Q Consensus 710 ~Dl~~lp~GD~T~iGe~G~~LSGGQkqRIaLARAlY~~~~i~lLDD~~SaLD~---------~t~~~I~~~---~i~g~l 777 (1455)
.|+.. +..| .+.++-|-.+.+|--..|-|+++||.=+.... ...+.+... .+.+ .
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~ 141 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-M 141 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
T ss_conf 99525------3165------158999999999986398435687546324557876788737999999999999628-6
Q ss_pred CC-C-CEEEEECCCCCCCCC
Q ss_conf 68-9-659998268310101
Q 000511 778 ML-Q-KTRILCTHNVQAISA 795 (1455)
Q Consensus 778 l~-~-kTvIlvTh~~~~l~~ 795 (1455)
.. . --+|.+||+.+.++.
T Consensus 142 ~~~~~v~vi~ttn~~~~ld~ 161 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIIDP 161 (265)
T ss_dssp ----CCEEEECCBSCTTTSC
T ss_pred CCCCCEEEEEECCCCHHCCH
T ss_conf 77799899991799222799
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.015 Score=32.81 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689984789999986486688
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~ 660 (1455)
+++|+|+.|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.028 Score=30.61 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=39.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCC---CHHHHHHHHHHHCC
Q ss_conf 996999996899847899999864866887089970919998488878886888885359999---97899999998232
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTL 708 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~---d~~~Y~~vi~ac~L 708 (1455)
+|.+++|+||+|+||+||.+.++-+.+...-.. .+.|..-.| |++=.-|..| +++.+++-+++=.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g~f 69 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRDAF 69 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------865543212334328999987542111
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.67 E-value=0.0093 Score=34.47 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 929999889997199999998337889
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLTPI 1272 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~ 1272 (1455)
|..+.|+||+|||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.58 E-value=0.16 Score=24.59 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=48.6
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 58929999889997199999998337889976699989738999958771463898077777777588842859999927
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1323 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIReNLdp~~~~sd~ 1323 (1455)
+.-+.|-++|..||||||+...++.- .|.+.|+ .++++. -.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~--------~D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVN--------RDTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEE--------HHHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEEC--------HHHHHH---------------------------HH
T ss_conf 99989999899999899999999976----5978976--------077778---------------------------88
Q ss_pred HHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 79999999009999996899415416999999369999-99999882599889985
Q 000511 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL-ICLARALLKSSKVLCLD 1378 (1455)
Q Consensus 1324 ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQl-l~LARAlL~~~~ILiLD 1378 (1455)
.+.+.++. ... .|.+..++. .|.+..+|+. +.+|+..=-+..++.+|
T Consensus 53 ~~~~~~~~-----~l~-~g~~vIiD~--t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA-----ALR-QGKRVVIDN--TNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH-----HHH-TTCCEEEES--CCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH-----HHH-CCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999-----997-799955517--6799999999999998558887999948
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.014 Score=33.13 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99998899971999999983378899
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPIC 1273 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~ 1273 (1455)
.++|+|++|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.016 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 9999968998478999998648668870899
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~ 665 (1455)
.+.|+||.|+|||||++.+..++....+.+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9999889997199999999999997799799
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.35 E-value=0.016 Score=32.56 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986486
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.|++++++|+.||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.31 E-value=0.034 Score=29.90 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=27.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8929999889997199999998337889976699989
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1455)
.|+.|.|+|++||||||+.+.|.+-+... -+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.23 E-value=0.013 Score=33.41 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=37.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCC
Q ss_conf 8929999889997199999998337889976699989738999958771463898077777
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1305 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~l 1305 (1455)
+|....++|.||.|||||+++|.+-.....|.|.-. ..-+.|+-|.+--+-+...++
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~----~~rGrHTTt~~~l~~~~gg~i 152 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEH----LGRGKHTTRHVELIHTSGGLV 152 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCC----CCCCCEEEEEEEEEECCCCEE
T ss_conf 356499987787348789875151767640355533----589712443478886279789
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.11 E-value=0.14 Score=24.93 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9758929999889997199999998337
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
-+++|..+-|.|++|+|||++..-+..-
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9869849999918999999999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.08 E-value=0.028 Score=30.59 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.05 E-value=0.19 Score=23.98 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
-+.+.||.|||||++.+++..++.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 799889699988999999862010
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.98 E-value=0.025 Score=31.08 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=34.2
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE------------EECCEECCCCCHHHHHCCC
Q ss_conf 892999988999719999999833788997669------------9989738999958771463
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------------LVDGLNIINTPVRDLRGRF 1296 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I------------~IDG~di~~i~~~~lR~~i 1296 (1455)
.|..+.|+||||+||+||.+.|+.-.+...-.. .+||+|.--++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655432123343289999875
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=92.90 E-value=0.024 Score=31.11 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++|+|+.++|||||+++|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.86 E-value=0.051 Score=28.56 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=24.4
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 474199699999689984789999986486
Q 000511 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 628 l~i~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
+.-++|.++.++|.+||||||+.+.|.-.+
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 858998699998999999899999999887
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.84 E-value=0.025 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689984789999986486688
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~ 660 (1455)
.+.|+|..|||||||+..++.++...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99998099998999999999999867
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=92.83 E-value=0.036 Score=29.78 Aligned_cols=24 Identities=58% Similarity=0.717 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 929999889997199999998337
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
|=||+++|++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.82 E-value=0.032 Score=30.14 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCC
Q ss_conf 9999968998478999998648668870899709199984888788
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~ 680 (1455)
+++|.|++||||||+.+.|.-.+...... .....+..++|+.|-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCC
T ss_conf 99998999787999999999996410134-5788439993465322
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=92.82 E-value=0.041 Score=29.26 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.74 E-value=0.21 Score=23.67 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 8929999889997199999998337
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.70 E-value=0.03 Score=30.41 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=22.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 299998899971999999983378899
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTPIC 1273 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~ 1273 (1455)
..+||+|++|||||||+..|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.68 E-value=0.033 Score=30.07 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.65 E-value=0.21 Score=23.58 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
-+.+.||.|+|||++.+++..|+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.60 E-value=0.045 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.++++|+.|+|||||+++|+|+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.58 E-value=0.22 Score=23.52 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++|+|++|+|||||..+||...
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~ 26 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKT 26 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999488980999999999970
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.55 E-value=0.22 Score=23.49 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=25.3
Q ss_pred CEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 000014741996999996899847899999864866
Q 000511 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 623 L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
++++....+ .-+.+.||.|||||++.+++..|+.
T Consensus 37 ~~~~g~~~~--~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 37 FQKLGGKIP--KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp C-----CCC--CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHCCCCCC--CEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 998699988--8678668998882289999999829
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.054 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=17.7
Q ss_pred HCCCCCEEEEC--CCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 81399988871--7853201999999999942184668965999826831
Q 000511 744 VYHGSDIYMLD--DVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 791 (1455)
Q Consensus 744 lY~~~~i~lLD--D~~SaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~ 791 (1455)
-..+.+++++| +.++.-|.. +.+. +. ..++-+++|-+..+
T Consensus 132 ~~~~~d~~l~~~~~~~~~~d~~----l~~~-l~---~~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 132 KFYEYDFFIIISATRFKKNDID----IAKA-IS---MMKKEFYFVRTKVD 173 (400)
T ss_dssp TGGGCSEEEEEESSCCCHHHHH----HHHH-HH---HTTCEEEEEECCHH
T ss_pred HHHCCEEEEEECCCCCCHHHHH----HHHH-HH---HCCCCEEEEEECCC
T ss_conf 3322659999658888788999----9999-99---76998799970863
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.55 E-value=0.046 Score=28.85 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=26.2
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 589299998899971999999983378899766
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1455)
.++-.|-+.|||||||||.+.++++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=92.53 E-value=0.046 Score=28.91 Aligned_cols=23 Identities=48% Similarity=0.807 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++++|++|+|||||+++++|+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.50 E-value=0.046 Score=28.88 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=19.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689984789999986486
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
..++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=92.42 E-value=0.029 Score=30.49 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|..|+|||||+++|.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.36 E-value=0.052 Score=28.47 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=23.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199699999689984789999986486
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
|+|..++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.27 E-value=0.048 Score=28.75 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
+|.++|+||+||||++++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.05 Score=28.58 Aligned_cols=22 Identities=45% Similarity=0.890 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
.++++|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.20 E-value=0.026 Score=30.89 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=24.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19969999968998478999998648668
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
.+.-.++|+|+.|+|||||+..+...+..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98328974389999899999999999975
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.14 Score=25.07 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=34.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHH
Q ss_conf 99998899971999999983378899766999897389999587714638980777777775888
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1312 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIRe 1312 (1455)
.|||.|++||||||+.+.|..++.-..+. .++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCCHHHH
T ss_conf 99996899998768999999997304689-----------------9659995215689845888
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.08 E-value=0.16 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=20.3
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199699999689984789999986486
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++-..++|+||.||||||+...|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.075 Score=27.18 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.5
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7419969999968998478999998648668
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
-+++|+++.|.|+.|||||+|+..++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.95 E-value=0.053 Score=28.39 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.1
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199699999689984789999986486
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++|.++.++|+.||||||+.++|.-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.90 E-value=0.026 Score=30.82 Aligned_cols=21 Identities=52% Similarity=0.733 Sum_probs=11.4
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
+|+|+|++++|||||+++|.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899988999989999999858
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.85 E-value=0.071 Score=27.39 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 5892999988999719999999833788
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.66 E-value=0.089 Score=26.59 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=31.1
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCC
Q ss_conf 741996999996899847899999864866887089970919998488
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~ 676 (1455)
=+|+|+++.|.|+.|||||+|..-++-........-...+.+.|...+
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~ 77 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 77 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 986996999983899988999999999863124312689639999402
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.63 E-value=0.094 Score=26.39 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89299998899971999999983378899766999897389999587714638980777777775888428599999277
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1324 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIReNLdp~~~~sd~e 1324 (1455)
+-..|.|+|+.||||||+...|..-+ |-+.|+.- +-+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~g-------dl~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAG-------DLLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHH-------HHHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----99088535-------8999886---2010178899887640000232036
Q ss_pred HHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999990099999968994154169999993699999999988259988998565
Q 000511 1325 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1455)
Q Consensus 1325 i~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1380 (1455)
....+...-...... .-+..+-++ +.....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~~--~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVKA--NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCC--CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 789999998864003--777535404---313689999999861545543125798
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.46 E-value=0.075 Score=27.20 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999864866
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
...++.|.|++||||||+.++|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.0033 Score=38.08 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.7
Q ss_pred CEECEEEECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 00001474199699999689984789999986
Q 000511 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 623 L~~isl~i~~G~l~~IvG~vGsGKSTLL~all 654 (1455)
+++.++.+.+| +++|+|++||||||+|.||.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.28 E-value=0.072 Score=27.34 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 9999889997199999998337889
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPI 1272 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~ 1272 (1455)
.|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.22 Score=23.44 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|..|+|||||++.+++.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.16 E-value=0.075 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999996899847899999864866
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
..+++|+||+|+||+||.+.|+.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.14 E-value=0.093 Score=26.45 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 5892999988999719999999833788
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
+.|..|.++|.+||||||+...|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.10 E-value=0.28 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899847899999864866
Q 000511 636 VAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
..+.||.|+||||+..++..|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.08 Score=26.95 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=32.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCC
Q ss_conf 7419969999968998478999998648668870899709199984888
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~p 677 (1455)
=+|+|+++.|.|+.|||||+|...++.+.............+.|.....
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 81 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
T ss_conf 9768979999889988788999999999974443166662488740177
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.02 E-value=0.055 Score=28.27 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1996999996899847899999864866
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
++.--++++|+.|+|||||++.+.|+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7777899999999898999999967887
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.94 E-value=0.1 Score=26.20 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.94 E-value=0.078 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.92 E-value=0.077 Score=27.09 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.|+|+|++|+|||||++.|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.85 E-value=0.086 Score=26.71 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.82 E-value=0.078 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++|+|++.+|||||+++|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=90.81 E-value=0.092 Score=26.47 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 92999988999719999999833788
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
...|.|+|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.78 E-value=0.079 Score=27.01 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999864866
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.+++|+|+.||||||+.+.|..++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.78 E-value=0.082 Score=26.86 Aligned_cols=151 Identities=17% Similarity=0.146 Sum_probs=68.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEEC--CCEEEECCCCCCCCCCHHH------HHCCCCCCCHHHHHHHHHH
Q ss_conf 99999689984789999986486688708-9970--9199984888788868888------8535999997899999998
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHAS--GSIAYVPQVPWILSGTIRD------NILFGKNYDPQSYSETLKA 705 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~-v~~~--g~iayv~Q~pwL~n~TIre------NIlfg~~~d~~~Y~~vi~a 705 (1455)
-++|+|..+||||||+++|+|+=-.-.|. .... -.+-|-. ++....+.-.. ..-....+|.......+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTH-LPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEE-CCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 5999818989799999999689978878975406888999945-776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHHC-----CCCCCCCCCCCCCCCCC-------HHHHHHHHHHHHCCCCC--EEEECCCCCCCCH
Q ss_conf 23---------22878403-----69975302579776660-------89999999998813999--8887178532019
Q 000511 706 CT---------LDVDISLM-----VGGDMAYIGEKGVNLSG-------GQRARLALARAVYHGSD--IYMLDDVLSAVDA 762 (1455)
Q Consensus 706 c~---------L~~Dl~~l-----p~GD~T~iGe~G~~LSG-------GQkqRIaLARAlY~~~~--i~lLDD~~SaLD~ 762 (1455)
.. ...+.... -..+.+.|.--|.+-+. .+.+--.+++...++++ ++...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 999999999421846689659998268
Q 000511 763 QVARWILSNAIMGPHMLQKTRILCTHN 789 (1455)
Q Consensus 763 ~t~~~I~~~~i~g~ll~~kTvIlvTh~ 789 (1455)
.....+.+. +.+ . ..+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-E-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-S-CSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-C-CCEEEEEEECC
T ss_conf 499999997-386-7-88589998204
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.70 E-value=0.085 Score=26.75 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++|+|+.|+|||||++++.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.59 E-value=0.33 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.7
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 975892999988999719999999833788
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.+++...+-+.|++|+|||++++++.+-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.56 E-value=0.086 Score=26.71 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 589299998899971999999983378
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
+.+..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.53 E-value=0.1 Score=26.05 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=31.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCC
Q ss_conf 999988999719999999833788997669998973899995877146389807777777
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1307 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~ 1307 (1455)
.|||.|++||||||+.+.|...+..... . .-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--~------------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--D------------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGS--C------------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCC--C------------CCCCCEEEEECCCCCCC
T ss_conf 9999899978799999999999641013--4------------57884399934653224
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.50 E-value=0.091 Score=26.53 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.|+|||||++.+.++-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.39 E-value=0.35 Score=21.86 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=14.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9969999968998478999998648
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe 656 (1455)
+...++++||+|+||||.+.-|.-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.35 E-value=0.08 Score=26.97 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699999689984789999986486688
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~~~~ 660 (1455)
+.+++|.|+.||||||+.+.|.-.+...
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9889998999989899999999999876
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.35 E-value=0.096 Score=26.32 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.34 E-value=0.096 Score=26.34 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.31 E-value=0.092 Score=26.47 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 2999988999719999999833788
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.+|+|+|++|||||||.+.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.21 E-value=0.12 Score=25.50 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
.|||+|++.+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.11 E-value=0.11 Score=25.75 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999988999719999999833788
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.09 E-value=0.11 Score=25.85 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9299998899971999999983378
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
...+.|+||||+||+||.+.|.+-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.98 E-value=0.21 Score=23.65 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=24.4
Q ss_pred CEECEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 000014741996999996899847899999864
Q 000511 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1455)
Q Consensus 623 L~~isl~i~~G~l~~IvG~vGsGKSTLL~allG 655 (1455)
++.--+.+ .|.=+.+.|++|+||||+...++.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.97 E-value=0.027 Score=30.76 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.|+|||||++++.|+-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.076 Score=27.14 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986486
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
+|..+.++|+.||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.81 E-value=0.38 Score=21.52 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=11.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
.+.+||+||+||||.+.=|...+
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.71 E-value=0.11 Score=25.74 Aligned_cols=148 Identities=17% Similarity=0.052 Sum_probs=63.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEEC--CCEEEECCCCCCCCCCHHHHHCCC-CCCCHHHHHH-HHHH----
Q ss_conf 99999689984789999986486688708-9970--919998488878886888885359-9999789999-9998----
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHAS--GSIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSE-TLKA---- 705 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~-v~~~--g~iayv~Q~pwL~n~TIreNIlfg-~~~d~~~Y~~-vi~a---- 705 (1455)
-++|+|...||||||+++|+|.=-.-.|. .... -.+.|........... ...+ ...|.+.+.. ..++
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 103 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFL----HCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEET----TSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE----ECCCCEECCHHHHHHHHHHHHHHH
T ss_conf 6999768989799999999689868878974035788999723565226898----689971478899999999999885
Q ss_pred HCCH----HHH-----HHCCCCCCCCCCCCCCC------CCCHHHH-HHHHHHHHCCCCC--EEEECCCCCCCCHHHHHH
Q ss_conf 2322----878-----40369975302579776------6608999-9999998813999--888717853201999999
Q 000511 706 CTLD----VDI-----SLMVGGDMAYIGEKGVN------LSGGQRA-RLALARAVYHGSD--IYMLDDVLSAVDAQVARW 767 (1455)
Q Consensus 706 c~L~----~Dl-----~~lp~GD~T~iGe~G~~------LSGGQkq-RIaLARAlY~~~~--i~lLDD~~SaLD~~t~~~ 767 (1455)
+.-. .+. ..--..+.+.|..-|.. -+..+.+ -.++++....+++ +++.++....+-......
T Consensus 104 ~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~ 183 (299)
T d2akab1 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred HCCCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 07776767760799974799887257716874334667763147999999999986275603566403454211259999
Q ss_pred HHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9999421846689659998268
Q 000511 768 ILSNAIMGPHMLQKTRILCTHN 789 (1455)
Q Consensus 768 I~~~~i~g~ll~~kTvIlvTh~ 789 (1455)
+.+. + . -...+|++++|+-
T Consensus 184 ~~~~-~-~-~~~~r~i~Vltk~ 202 (299)
T d2akab1 184 IAKE-V-D-PQGQRTIGVITKL 202 (299)
T ss_dssp HHHH-H-C-TTCSSEEEEEECG
T ss_pred HHHH-H-C-CCCCCEEEEEECC
T ss_conf 9997-3-8-6778136677026
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.66 E-value=0.094 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.64 E-value=0.093 Score=26.44 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=24.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf 2999988999719999999833788997669
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I 1277 (1455)
..|+|.|+.||||||+.+.|...+......+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8899989999898999999999998769986
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=89.63 E-value=0.085 Score=26.73 Aligned_cols=34 Identities=35% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 9299998899971999999983378899766999
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1279 (1455)
.-+|||.|+.|||||||+..|.+.+....-+|-+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vav 87 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 87 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 3289743899998999999999999756983322
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.61 E-value=0.1 Score=26.06 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998648668
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.52 E-value=0.15 Score=24.85 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=22.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199699999689984789999986486
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
|+|--++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.4 Score=21.34 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=27.1
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEE
Q ss_conf 975892999988999719999999833788997669998973
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283 (1455)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d 1283 (1455)
.+++...+-+.||.|+|||++++++.+.+... -+.+++-+
T Consensus 41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~ 80 (256)
T d1lv7a_ 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (256)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHH
T ss_conf 99988867866899888228999999982998--79988699
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.41 E-value=0.17 Score=24.37 Aligned_cols=163 Identities=18% Similarity=0.174 Sum_probs=70.5
Q ss_pred CEECEE-EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHH
Q ss_conf 000014-7419969999968998478999998648668870899709199984888788868888853599999789999
Q 000511 623 LNQVSL-CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 701 (1455)
Q Consensus 623 L~~isl-~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL~n~TIreNIlfg~~~d~~~Y~~ 701 (1455)
|+++-- -+++|+++.|.|++|+|||+|..-++....... ...+.|++-+.- ...++....- ..++.+.+..
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~-----~~~~~~~s~e~~--~~~~~~~~~~-~~~~~~~~~~ 86 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----DEPGVFVTFEET--PQDIIKNARS-FGWDLAKLVD 86 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----CCCEEEEESSSC--HHHHHHHHGG-GTCCHHHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-----CCCCCCCCCCCC--HHHHHHHHHH-CCCCHHHHHH
T ss_conf 9885568996983999994799999999999999999856-----887420126679--9999999998-4998489887
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHH-HH-HHHHHC-CCCCEEEECCCCCCC----CHHHHHHHHHHHHC
Q ss_conf 999823228784036997530257977666089999-99-999881-399988871785320----19999999999421
Q 000511 702 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR-LA-LARAVY-HGSDIYMLDDVLSAV----DAQVARWILSNAIM 774 (1455)
Q Consensus 702 vi~ac~L~~Dl~~lp~GD~T~iGe~G~~LSGGQkqR-Ia-LARAlY-~~~~i~lLDD~~SaL----D~~t~~~I~~~~i~ 774 (1455)
.-. ... -+.....+.-...+...... +. +.+++. .+++++++|...+-. +......++..++.
T Consensus 87 ---~~~----~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~ 156 (242)
T d1tf7a1 87 ---EGK----LFI---LDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 156 (242)
T ss_dssp ---TTS----EEE---EECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred ---HCC----HHH---HHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---143----024---4421033544443024589999999999886312220020788998760572678999999999
Q ss_pred CCCCCCCEEEEECCCCCCC----------CCCCEEEEEE
Q ss_conf 8466896599982683101----------0189899993
Q 000511 775 GPHMLQKTRILCTHNVQAI----------SAADMVVVMD 803 (1455)
Q Consensus 775 g~ll~~kTvIlvTh~~~~l----------~~aD~Ii~l~ 803 (1455)
-....+.|++++.|...-. ..+|.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 157 RLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 998639716884210255422246762335362999988
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.40 E-value=0.12 Score=25.59 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999968998478999998648668
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
...+.+.||.||||||+.+++.+|+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.29 E-value=0.11 Score=25.93 Aligned_cols=24 Identities=42% Similarity=0.708 Sum_probs=20.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999988999719999999833788
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.|.|+|||||||+||.+.|..-.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.27 E-value=0.42 Score=21.23 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 929999889997199999998337889976699989738
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1284 (1455)
+..+.+||+||+||||.+.=|...+.-..-+|.+=..|.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 779999899999889999999999997799079998136
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.26 E-value=0.18 Score=24.09 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.3
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 5892999988999719999999833788997669998
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1455)
|+|-++.|+|+.||||||+.+.|..-+ |-..|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~ 33 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA 33 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf 996389998999998899999999986----985775
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.19 E-value=0.13 Score=25.38 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999864866
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
+.-+++|.|+.||||||+++.|..++.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.18 E-value=0.12 Score=25.67 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999889997199999998337889976699989
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1455)
..|.|+|++||||||+.+.|.+-+. +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.42 Score=21.17 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.17 Score=24.44 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.|+|+|++|+|||||+++|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.88 E-value=0.087 Score=26.68 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=25.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCC
Q ss_conf 99999689984789999986486688708997091999848887
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pw 678 (1455)
+++|.|+.|||||||...|.-.+....|. .-.++.+|.+.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCC
T ss_conf 99837998788999999999999987277---860676356777
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=88.79 E-value=0.17 Score=24.28 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCC--CCCCHHHHHCCCC
Q ss_conf 996999996899847899999864866887089970919998488878--8868888853599
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI--LSGTIRDNILFGK 692 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL--~n~TIreNIlfg~ 692 (1455)
+|.+++|-|+.||||||+...|...+... |. ...+..++|+= ...-+|+....+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~-g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~ 57 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GI-----RDMVFTREPGGTQLAEKLRSLLLDIK 57 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TC-----CCEEEEESSCSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CC-----CEEEEECCCCCCCCHHHHHHHHHCCC
T ss_conf 98789998998887999999999999967-99-----73998329899611445589884621
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=88.78 E-value=0.15 Score=24.70 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.5
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 299998899971999999983378
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.23 Score=23.36 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=25.0
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 97589299998899971999999983378
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
-+++|+.+-|.|++|||||++..-+..-.
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.74 E-value=0.18 Score=24.13 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.8
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 41996999996899847899999864866
Q 000511 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 630 i~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
+++|+++.|.|+.|+|||+|..-++-...
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 62885999991799998999999999998
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.62 E-value=0.15 Score=24.72 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.++|+||+||||+|+.+.++-+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.61 E-value=0.14 Score=24.98 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999864866
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.58 E-value=0.16 Score=24.47 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+|++.+|||||+++|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.58 E-value=0.18 Score=24.16 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986486
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.54 E-value=0.11 Score=25.92 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.49 E-value=0.11 Score=25.96 Aligned_cols=21 Identities=57% Similarity=0.811 Sum_probs=19.5
Q ss_pred EEEECCCCCHHHHHHHHHHCC
Q ss_conf 999889997199999998337
Q 000511 1249 VGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1249 vgIvGrTGSGKSTLl~~L~rl 1269 (1455)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.35 E-value=0.35 Score=21.80 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.31 E-value=0.18 Score=24.12 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
-++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.26 E-value=0.2 Score=23.73 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 19969999968998478999998648668
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
++|.+++|.|+-||||||+.+.|...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=88.06 E-value=0.49 Score=20.64 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
.++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.98 E-value=0.13 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999864866
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.97 E-value=0.11 Score=26.01 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 892999988999719999999833788
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.93 E-value=0.5 Score=20.58 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=14.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 299998899971999999983378
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
..+.++|++|+||||.+.-|...+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=87.92 E-value=0.18 Score=24.08 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.2
Q ss_pred CEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 29999889997199999998337
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=87.90 E-value=0.5 Score=20.57 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=9.6
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 699999689984789999986
Q 000511 634 SLVAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~all 654 (1455)
..++++||.|+||||.+.-|.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998999998899999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.84 E-value=0.17 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 699999689984789999986
Q 000511 634 SLVAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~all 654 (1455)
-+++|+|++||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.82 E-value=0.2 Score=23.80 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++|+|.+.+|||||+++|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.71 E-value=0.18 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999689984789999986486
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
+.--++++|..|||||||++.+.|.-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 85799999999989899999996688
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.69 E-value=0.2 Score=23.85 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=19.0
Q ss_pred EEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9998899971999999983378
Q 000511 1249 VGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1249 vgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
|.|+|||||||+||.+.|..-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.68 E-value=0.43 Score=21.15 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|..|+|||||++.++++-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.60 E-value=0.2 Score=23.74 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000511 635 LVAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~all 654 (1455)
+++|+|+.||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.60 E-value=0.42 Score=21.18 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=23.2
Q ss_pred CEECEEEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 000014741996999996899847899999864
Q 000511 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1455)
Q Consensus 623 L~~isl~i~~G~l~~IvG~vGsGKSTLL~allG 655 (1455)
++.--+ .-.|.=+.+.|++|+||||+...++.
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=87.52 E-value=0.19 Score=23.97 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.37 E-value=0.19 Score=24.01 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 89299998899971999999983378
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
..-||.++|++|+|||||++.|.+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 77789999999989899999996788
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.36 E-value=0.24 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999996899847899999864866
Q 000511 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 632 ~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
+|.+++|-|+-||||||+.+.|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.31 E-value=0.2 Score=23.84 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.30 E-value=0.21 Score=23.64 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++|+.|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.16 E-value=0.22 Score=23.46 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++|+|+.|+|||||++.+++.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=87.14 E-value=0.21 Score=23.53 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.|||+|+..+|||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.02 E-value=0.27 Score=22.68 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998648668
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
-++|+|.+.+|||||+.+|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.99 E-value=0.31 Score=22.28 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
||.++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.94 E-value=0.23 Score=23.31 Aligned_cols=21 Identities=38% Similarity=0.784 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++|..|+|||||++.+++.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=86.92 E-value=0.18 Score=24.19 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=29.6
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 74199699999689984789999986486688708
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 663 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~ 663 (1455)
-+++|.++.+.|+.||||||++..+..+.....|.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~ 84 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 84 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 96673589980577747899999999998708987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.86 E-value=0.23 Score=23.25 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.|+|||||++.+.+.-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=86.77 E-value=0.24 Score=23.17 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.1
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 2999988999719999999833788
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
..|-++|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.70 E-value=0.24 Score=23.18 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHC
Q ss_conf 2999988999719999999833
Q 000511 1247 TQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.67 E-value=0.58 Score=20.06 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCHHHHH
Q ss_conf 5998899856576989998999999999825--9947998626814674
Q 000511 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1416 (1455)
Q Consensus 1370 ~~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f--~~~TvI~IaHRl~ti~ 1416 (1455)
.+..++++||.-.+-|++--..+-..+-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.62 E-value=0.26 Score=22.85 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.4
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.47 E-value=0.59 Score=19.99 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|+.|+|||||++.+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.39 E-value=0.24 Score=23.20 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999968998478999998648
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe 656 (1455)
--++|||-..+|||||++++.+-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.39 E-value=0.2 Score=23.82 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=21.2
Q ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4199699999689984789999986486
Q 000511 630 LPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 630 i~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++.++.|.||.||||||..+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=86.39 E-value=0.016 Score=32.53 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.1
Q ss_pred CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 20223599758929999889997199999998337
Q 000511 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
..++.++...+| ...|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=86.28 E-value=0.089 Score=26.59 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=29.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCCCC
Q ss_conf 6999996899847899999864866887089970919998488878
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 679 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~pwL 679 (1455)
-+++|.|++||||||+.+++...+... +-+++.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~------~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE------GVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH------TCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC------CCCEEEEECCCCC
T ss_conf 899998999780999999999997156------9976999477787
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.23 E-value=0.34 Score=21.92 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 69999999998825998--89985657698999899999999982599479986268
Q 000511 1357 GQRQLICLARALLKSSK--VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411 (1455)
Q Consensus 1357 GQrQll~LARAlL~~~~--ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHR 1411 (1455)
.+.+...+++..++++. |++...++.....+....+.+.+... ..+|++++++-
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL 208 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC
T ss_conf 899999999999827775168763256310034999999973867-88589998204
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.21 E-value=0.26 Score=22.81 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=21.5
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 5892999988999719999999833
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
++.-||.+||+.|+|||||++.|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHC
T ss_conf 9857999999999898999999966
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.16 E-value=0.25 Score=22.95 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=24.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 92999988999719999999833788997669998
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1455)
...|.|+|+.||||||+...|..-+ |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 9489998999998899999999997----992672
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.05 E-value=0.29 Score=22.50 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.9
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1996999996899847899999864866
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
..+..++|.||.|+|||||+..++-+..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.02 E-value=0.13 Score=25.37 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999864866
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
--++++|++++|||||+++|+|+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.02 E-value=0.27 Score=22.73 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHCC
Q ss_conf 29999889997199999998337
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
-|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.93 E-value=0.32 Score=22.17 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999968998478999998648668
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
....+.||.|+||||+..++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.89 E-value=0.34 Score=21.96 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.80 E-value=0.32 Score=22.15 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999988999719999999833788
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.|.++|++||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.79 E-value=0.24 Score=23.09 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 2999988999719999999833788
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
-.|+|-|..||||||+++.|.+-+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=85.79 E-value=0.24 Score=23.18 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.4
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 7419969999968998478999998648668
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
..++|.++.+.|+.|||||||.++++..+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.74 E-value=0.28 Score=22.59 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++|+.|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.74 E-value=0.27 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|...+|||||++++.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.68 E-value=0.25 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.|+|||||++.+.+.-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.64 E-value=0.23 Score=23.36 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 892999988999719999999833788
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.+..|+|-|..||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=85.46 E-value=0.29 Score=22.49 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
.|||+|..||||||+...|-.+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.31 E-value=0.48 Score=20.70 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=19.7
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4741996999996899847899999864
Q 000511 628 LCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1455)
Q Consensus 628 l~i~~G~l~~IvG~vGsGKSTLL~allG 655 (1455)
+-.-.|.=+.+.|++|+||||+...++.
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999980899999999999998
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.22 E-value=0.22 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000511 635 LVAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~all 654 (1455)
-++|+|++|||||||..+|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.18 E-value=0.25 Score=23.00 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 199699999689984789999986486
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.+.-.++|+|+.|+|||||+..+...+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 981598611799888999999999987
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.11 E-value=0.28 Score=22.57 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=26.8
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 741996999996899847899999864866
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.+|++...++.||.|+|||++.+++.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.09 E-value=0.32 Score=22.15 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.|+|||||++.+++.-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.91 E-value=0.31 Score=22.27 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++|+|++++|||||+.+|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.89 E-value=0.33 Score=22.06 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999968998478999998648668870
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G 662 (1455)
-..+.||.|+||||+.+++..|+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=84.85 E-value=0.35 Score=21.83 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689984789999986
Q 000511 635 LVAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~all 654 (1455)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.82 E-value=0.38 Score=21.55 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.|+|||||++.+++.-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.75 E-value=0.66 Score=19.62 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=84.53 E-value=0.43 Score=21.11 Aligned_cols=41 Identities=24% Similarity=0.236 Sum_probs=30.2
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
Q ss_conf 58929999889997199999998337889--976699989738
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1284 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di 1284 (1455)
+.|..|-+.|.+||||||+.+.|...+.. .--.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.51 E-value=0.38 Score=21.54 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
+++|.|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.49 E-value=0.62 Score=19.83 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=33.5
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHCCCCCCCC-EEEECCEE
Q ss_conf 9758929999889997199999998337889976-69998973
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-QILVDGLN 1283 (1455)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G-~I~IDG~d 1283 (1455)
-+++|..+-|.|++||||||+..-+..-..-..| -++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.47 E-value=0.36 Score=21.75 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=84.41 E-value=0.4 Score=21.32 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCC
Q ss_conf 19969999968998478999998648668870899709199984888
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~p 677 (1455)
+++..++++||.|+||||.+.-|.-.+. ..|. +++.+.=+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g~-----kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGK-----KVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TTTC-----CEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCCC-----CEEEEEECC
T ss_conf 9977999989999988999999999999-7799-----079998136
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.20 E-value=0.38 Score=21.53 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999864866
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
-.++|-||.||||||..+.|.-++.
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 5999789998798999999999969
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.20 E-value=0.41 Score=21.25 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|..|+|||||++.+.+.-
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.12 E-value=0.5 Score=20.60 Aligned_cols=25 Identities=44% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998648668
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
.++++|..|+|||||++.+.+.-..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=84.07 E-value=0.37 Score=21.61 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.86 E-value=0.49 Score=20.65 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.85 E-value=0.26 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.84 E-value=0.34 Score=21.91 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=50.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH-HCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 999988999719999999833788997669998973899995877-1463898077777777588842859999927799
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~~IpQdp~lf~gTIReNLdp~~~~sd~ei~ 1326 (1455)
+|.|.|+.||||||+.+.|..-+ |-..|+ ..++ |..+ +...-....+.+.++.+....++...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~----~~~~is--------~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~ 68 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY----QLAHIS--------AGDLLRAEI----AAGSENGKRAKEFMEKGQLVPDEIVV 68 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH----CCEECC--------HHHHHHHHH----HHTCHHHHHHHHHHHTTCCCCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEEE--------HHHHHHHHH----HCCCHHHHHHHHHHHCCCCCCCEEEH
T ss_conf 99998899999899999999987----991785--------007888764----11337899999998668854321210
Q ss_pred HHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999990099999968994154169999993699999999988259988998565
Q 000511 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1455)
Q Consensus 1327 ~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1380 (1455)
..+...-.......-|+ +-++ +..-..|...+.+...+...+++||-+
T Consensus 69 ~~~~~~~~~~~~~~~~~---vid~---~~~~~~q~~~l~~~~~~p~~~i~L~~~ 116 (189)
T d1zaka1 69 NMVKERLRQPDAQENGW---LLDG---YPRSYSQAMALETLEIRPDTFILLDVP 116 (189)
T ss_dssp HHHHHHHHSHHHHHTCE---EEES---CCCSHHHHHHHHTTTCCCSEEEEEECC
T ss_pred HHHHHHHHHCCCCCCCE---EEEC---CCHHHHHHHHHHHCCCCCCHHEEECHH
T ss_conf 35666765301446737---9606---212467775443013451121011100
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=83.81 E-value=0.35 Score=21.84 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=25.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999996899847899999864866887089970
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~ 667 (1455)
.+.|-|+.|+||||+++.|..++....+.+.+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~ 40 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYFP 40 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 999988866789999999999865699769982
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.79 E-value=0.39 Score=21.46 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+|..|+|||||++.+++.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=83.78 E-value=0.18 Score=24.11 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9299998899971999999983378
Q 000511 1246 GTQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
.-+|||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.76 E-value=0.39 Score=21.40 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.|+|||||++.+++.-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.74 E-value=0.33 Score=22.02 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.|+|||||++.+++.-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=0.4 Score=21.34 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++|+.|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.68 E-value=0.41 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+||.||||||+...|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.67 E-value=0.45 Score=20.93 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
.|||.|..|||||||...|...+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.67 E-value=0.41 Score=21.24 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+||.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=83.56 E-value=0.44 Score=21.06 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.6
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
.|||+|..||||||..+.|-.
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.53 E-value=0.39 Score=21.49 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.41 E-value=0.51 Score=20.52 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
|+.++|..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.13 E-value=0.38 Score=21.52 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 1996999996899847899999864866
Q 000511 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 631 ~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
|++.+ .++||+|||||.|.+++..++.
T Consensus 48 ~~~~i-Ll~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNI-LMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCE-EEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHCCC
T ss_conf 98669-9989999888899999862132
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.12 E-value=0.43 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.99 E-value=0.37 Score=21.63 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|..|+|||||++.++++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.98 E-value=0.29 Score=22.42 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968998478999998648668
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
...+.||.|+||||+.+++..++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.93 E-value=0.55 Score=20.27 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=25.7
Q ss_pred CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 2022359975892999988999719999999833
Q 000511 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
+|.+ -+++|+.+-|.|++||||||+..-+..
T Consensus 26 ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 26 LLGG---GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp HHTS---SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3179---986996999983899988999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.92 E-value=0.45 Score=20.93 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHH-CCC
Q ss_conf 9999689984789999986-486
Q 000511 636 VAVIGEVGSGKSSLLNSIL-GEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~all-Ge~ 657 (1455)
++++|..|+|||||++.++ |+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999298999999973999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=82.82 E-value=0.4 Score=21.37 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEECCCCCHHHHHHHHHHC
Q ss_conf 2999988999719999999833
Q 000511 1247 TQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
=||.++|+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=82.79 E-value=0.39 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
-++++|+.||||||+.+.+.-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.74 E-value=0.81 Score=18.92 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=22.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999988999719999999833-----78899766
Q 000511 1248 QVGIVGRTGAGKSSILNALFR-----LTPICGGQ 1276 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r-----l~~~~~G~ 1276 (1455)
||.++|..|+|||||++.+.. -+.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=82.73 E-value=0.42 Score=21.16 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.7
Q ss_pred ECEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0014741996999996899847899999864866
Q 000511 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 625 ~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
|.=+.+-+|+-.+|.|+.|+|||+|+..+.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.44 E-value=0.48 Score=20.69 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.41 E-value=0.39 Score=21.40 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689984789999986486
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
+-.++|+|...+|||||++++.+.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.38 E-value=0.42 Score=21.16 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=32.9
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCCC
Q ss_conf 7419969999968998478999998648668870899709199984888
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~p 677 (1455)
-+|.|.++.+.|+.|||||+++.-+..+.....|. +.|+.=+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~------~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV------AAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE------EEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE------EEEEECCC
T ss_conf 86663369996488748899999999987548988------99998976
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=82.34 E-value=0.44 Score=21.00 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999864866
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.+++|.|+.||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=0.41 Score=21.30 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
.++++|+.|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.32 E-value=0.87 Score=18.67 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=30.0
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEECCCHHHH
Q ss_conf 259988998565769899989999-9999982--5994799862681467
Q 000511 1369 LKSSKVLCLDECTANVDAQTASIL-QNAISSE--CKGMTVITIAHRISTV 1415 (1455)
Q Consensus 1369 L~~~~ILiLDEaTS~lD~~Te~~i-~~~i~~~--f~~~TvI~IaHRl~ti 1415 (1455)
..+..++++||.-.+=|++--..+ ...++.. ..++.+++.+|..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.32 E-value=0.5 Score=20.59 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
+|.|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.29 E-value=0.55 Score=20.23 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=61.0
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99998899971999999983378899766999897389999587714638980777777775888428599999277999
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIReNLdp~~~~sd~ei~~ 1327 (1455)
+|.|.|+.||||||..+.|..-+ |-..|+- -+-+|..+ .++...+.-.+.+.+.-+....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHHCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC--C-EEEEECC
Q ss_conf 99990099999968-9941541699999936999999999882599--8-8998565
Q 000511 1328 VLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSS--K-VLCLDEC 1380 (1455)
Q Consensus 1328 aL~~~~L~~~i~~l-gLdt~i~e~G~~LS~GQrQll~LARAlL~~~--~-ILiLDEa 1380 (1455)
.+... +....... .-+..+-++ +...+.|.-.+.+.+-... . ++++|.+
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~g---~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAANAQKNKFLIDG---FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHCTTCCEEEEES---CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHHHCCCCEEECC---CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-412100011245111011---030489999986442105543389962476
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.20 E-value=0.095 Score=26.37 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.17 E-value=0.49 Score=20.66 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.0
Q ss_pred ECCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 5892999988999719999999833788
Q 000511 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
+.|-.|+|.|.-||||||++..|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=82.13 E-value=0.35 Score=21.81 Aligned_cols=42 Identities=21% Similarity=0.474 Sum_probs=34.0
Q ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCC
Q ss_conf 741996999996899847899999864866887089970919998488
Q 000511 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1455)
Q Consensus 629 ~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~ 676 (1455)
-+|.|.++-|.|+.|||||+|...+..+..... +.++|..-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC------CEEEEEECC
T ss_conf 866754789805876522799999999997079------989999887
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=82.10 E-value=0.55 Score=20.26 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
.|||+|...+|||||++.|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.09 E-value=0.37 Score=21.59 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=31.4
Q ss_pred EEEECCEEEECCCCCCCCCCCCEECEEEECCCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99981268604788633365400001474199699999689984789999986486
Q 000511 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~isl~i~~G~l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
|+=+++.+....+ .-..|+.++ .|=.++.|+|+-++|||+||+.++|..
T Consensus 8 i~~~~~~l~~~~e----~l~~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 8 IENTNGRLMANPE----ALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEETTEEEECHH----HHHHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EECCCCEEEECHH----HHHHHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9769994998999----999997079---987999988999997999999980998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.03 E-value=0.56 Score=20.19 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=19.2
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899798999999970
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=0.65 Score=19.66 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.87 E-value=0.25 Score=22.98 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.2
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCC
Q ss_conf 9999889997199999998337889976699989738999958771463898077777
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1305 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~l 1305 (1455)
.|||+|.|||||||+.+.|...+... | -..++|+||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.86 E-value=0.51 Score=20.50 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|..|+|||||++.+++.-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.83 E-value=0.6 Score=19.94 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.77 E-value=0.52 Score=20.46 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.76 E-value=0.72 Score=19.30 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++.|.|.-|||||||++-++.+-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.69 E-value=0.66 Score=19.63 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=71.7
Q ss_pred CEEEEEE-EEECCCEEEEECCCCCHHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCCCCCCHHH
Q ss_conf 2022359-97589299998899971999999983-378899766999897389999587714638980777777775888
Q 000511 1235 ALHDINF-TIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1312 (1455)
Q Consensus 1235 vL~~isl-~I~~GekvgIvGrTGSGKSTLl~~L~-rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~lf~gTIRe 1312 (1455)
-|+++-- -+++|+.+-|.|++|+|||++..-+. .........+.+.. ...+...++..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~~~----------------- 73 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDIIKN----------------- 73 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHHHH-----------------
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHHH-----------------
T ss_conf 7988556899698399999479999999999999999985688742012---66799999999-----------------
Q ss_pred HCCCCCCCCHHHHHHHHHHHCHHHHHHHC---CCCH-HHHCCCCCCCH-HHHHHHHHHHHHCC--CCCEEEEECCCCCCC
Q ss_conf 42859999927799999990099999968---9941-54169999993-69999999998825--998899856576989
Q 000511 1313 NLDPFHMNDDLKIWSVLEKCHVKEEVEAV---GLET-FVKESGISFSV-GQRQLICLARALLK--SSKVLCLDECTANVD 1385 (1455)
Q Consensus 1313 NLdp~~~~sd~ei~~aL~~~~L~~~i~~l---gLdt-~i~e~G~~LS~-GQrQll~LARAlL~--~~~ILiLDEaTS~lD 1385 (1455)
..-++. . ..+.+... ..+. ...+.-..+.. -...++.-.+..++ +++++++|--++-.+
T Consensus 74 -~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~ 139 (242)
T d1tf7a1 74 -ARSFGW-D------------LAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQ 139 (242)
T ss_dssp -HGGGTC-C------------HHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTST
T ss_pred -HHHCCC-C------------HHHHHHHCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -998499-8------------48988714302444210335444430245899999999998863122200207889987
Q ss_pred H-----HHHHHHHHHHHHH-CCCCEEEEECCCHHH---------HH-HHCEEEEEE
Q ss_conf 9-----9899999999982-599479986268146---------74-108798993
Q 000511 1386 A-----QTASILQNAISSE-CKGMTVITIAHRIST---------VL-NMDEILILD 1425 (1455)
Q Consensus 1386 ~-----~Te~~i~~~i~~~-f~~~TvI~IaHRl~t---------i~-~~D~I~vld 1425 (1455)
. ...+.+.+.++.. ..++|++.++|.... .. .+|.++.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 140 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 60572678999999999998639716884210255422246762335362999988
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=81.67 E-value=0.53 Score=20.39 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996899847899999864866
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
+++|.||.||||||..+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.66 E-value=0.53 Score=20.36 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.4
Q ss_pred EEEEECCCCCHHHHHHHHHHCC
Q ss_conf 9999889997199999998337
Q 000511 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1455)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.59 E-value=0.49 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996899847899999864866
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
.+++|-|..||||||+++.|--.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.54 E-value=0.46 Score=20.86 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|..|+|||||++.+++.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.47 E-value=0.58 Score=20.06 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|..|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=81.36 E-value=0.76 Score=19.14 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 969999968998478999998648668870
Q 000511 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1455)
Q Consensus 633 G~l~~IvG~vGsGKSTLL~allGe~~~~~G 662 (1455)
..-+.|.||.|+|||++++.++.++....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.36 E-value=0.52 Score=20.44 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++|+|++++|||||+.+|++.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999958898099999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.36 E-value=0.49 Score=20.62 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=81.35 E-value=0.53 Score=20.36 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=22.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 999988999719999999833788997669998
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1455)
.|.++|.+||||||+.+.|..-+ |--.+|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf 39998999998899999999983----998783
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=81.34 E-value=0.34 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999968998478999998648
Q 000511 634 SLVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 634 ~l~~IvG~vGsGKSTLL~allGe 656 (1455)
=-++++|+.|+|||||++.+.++
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 89999999999889999887338
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.31 E-value=0.51 Score=20.51 Aligned_cols=177 Identities=12% Similarity=0.175 Sum_probs=85.1
Q ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCCEEEECCCCC-CCCCHHHHC--CCCCCCC
Q ss_conf 99998899971999999983---37889976699989738999958771463898077777-777588842--8599999
Q 000511 1248 QVGIVGRTGAGKSSILNALF---RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL--DPFHMND 1321 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~---rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~l-f~gTIReNL--dp~~~~s 1321 (1455)
.|||+|..|||||||+.+|+ |..+ ..|++. ||-.+.+...++..+.+++-+.-..+ +.+ -+-|+ .|+...=
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~-~~~n~iDtPG~~dF 84 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKD-HRINIIDAPGHVDF 84 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETT-EEEEEECCCSSSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCC-EEEEEECCCCHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598-38999527860226
Q ss_pred HHHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 27799999990099999968994154169999993699999999988259988998---565769899989999999998
Q 000511 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISS 1398 (1455)
Q Consensus 1322 d~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiL---DEaTS~lD~~Te~~i~~~i~~ 1398 (1455)
-.+...++..+.. --.|-+.....-.+-++..-.|+. .+-|+|+.+ |-+-+.. ..+.+.|++
T Consensus 85 ~~e~~~~l~~~D~---------avlVvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~ei~~ 149 (276)
T d2bv3a2 85 TIEVERSMRVLDG---------AIVVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRTMQE 149 (276)
T ss_dssp STTHHHHHHHCCE---------EEEEEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------EEEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCC-----CHHHHHHHH
T ss_conf 9999999996300---------577322567744669999999998-5999799986445654312-----126899999
Q ss_pred HCC-CCEEEEECCC----HHHHHH--HCEEEEEEC---CEEEEECCHHHHHCCC
Q ss_conf 259-9479986268----146741--087989939---8598967945885029
Q 000511 1399 ECK-GMTVITIAHR----ISTVLN--MDEILILDH---GHLVEQGNPQTLLQDE 1442 (1455)
Q Consensus 1399 ~f~-~~TvI~IaHR----l~ti~~--~D~I~vld~---GrivE~g~p~eLl~~~ 1442 (1455)
.+. ++..+.+-=. ...+.| -.+.+.-++ ++..+..-|+++.+..
T Consensus 150 ~l~~~~vp~~~Pig~~~~f~GvvDl~~~~a~~~~~~~g~~~~~~~ip~~~~~~~ 203 (276)
T d2bv3a2 150 RLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQA 203 (276)
T ss_dssp TTCCCEEECEEEESCGGGCCEEEETTTTEEEEESSSSSCCEEEECCCGGGHHHH
T ss_pred HHCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCEECCCCHHHHHHH
T ss_conf 859971789833457875138850561089985588886540025856777777
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.28 E-value=0.6 Score=19.97 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|..|+|||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=81.26 E-value=0.42 Score=21.20 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC---CCCCCEE
Q ss_conf 299998899971999999983378---8997669
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLT---PICGGQI 1277 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~---~~~~G~I 1277 (1455)
-+|+|-||.||||||+.+.|..-+ ..+.|.+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 5999789998798999999999969947877999
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.23 E-value=0.56 Score=20.21 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++++|..|+|||||++.+.+.-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989908899999997199
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.22 E-value=0.41 Score=21.29 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=14.0
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 299998899971999999983378
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
.-+.++||||+|||.|.++|.+.+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 669998999988889999986213
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=81.21 E-value=0.63 Score=19.75 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8929999889997199999998337889976699989738
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1284 (1455)
+...+.+||+||+||||.+.=|...+.-..-+|.+=..|.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt 49 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 49 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9989999899999889999999999997799069996013
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=81.12 E-value=0.72 Score=19.32 Aligned_cols=32 Identities=34% Similarity=0.599 Sum_probs=24.8
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999889997199999998337889976699989
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1455)
-+-+.|++|+||||+.++|.+-+. .+-+.+++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEEC
T ss_conf 999889799889999999999865--15489832
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.11 E-value=0.69 Score=19.46 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=26.1
Q ss_pred CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 2022359975892999988999719999999833
Q 000511 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
.|.+ -+++|+.+-|.|++|+|||++..-+..
T Consensus 29 ~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 29 LLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3169---976897999988998878899999999
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.10 E-value=0.76 Score=19.12 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf 89299998899971999999983378899766
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1455)
+|..|+|-|.-||||||++..|...++. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.97 E-value=0.49 Score=20.68 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689984789999986486
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~ 657 (1455)
.++|+|+.|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.96 E-value=0.51 Score=20.52 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++||.||||||..+.|.-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999879999989999999998
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.94 E-value=0.49 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
.++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.94 E-value=0.58 Score=20.08 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.9
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=80.90 E-value=0.62 Score=19.83 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996899847899999864
Q 000511 635 LVAVIGEVGSGKSSLLNSILG 655 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allG 655 (1455)
+++|+|+.||||||..+.+..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=80.90 E-value=0.57 Score=20.15 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=22.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999889997199999998337889976699989
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1455)
+.|-++|..||||||+.+.|..-+. --.+|+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg----~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALG----YEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT----CEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHC----CCEEEH
T ss_conf 9889988999988999999999949----987865
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=80.81 E-value=0.61 Score=19.90 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
+|.|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.80 E-value=0.72 Score=19.31 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=24.9
Q ss_pred CEEEEEEEEECCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 202235997589299998899971999999983
Q 000511 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1267 (1455)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~ 1267 (1455)
.|.+ -+++|+.+-|.|++||||||+..-+.
T Consensus 28 ll~G---Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 28 LLGG---GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp HHTS---SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 4269---95588799998589898899999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=80.74 E-value=0.47 Score=20.81 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+|.+|||||+..||.+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~ 33 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDS 33 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999378989899999999986
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.67 E-value=0.6 Score=19.97 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++|+.|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992999999999719
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.66 E-value=0.51 Score=20.54 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999968998478999998648
Q 000511 636 VAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe 656 (1455)
++++|..|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.64 E-value=0.71 Score=19.37 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=26.4
Q ss_pred CEEEEECCCCCHHHHHHHHHHCC-----CCCCCCE-----EEECCEEC
Q ss_conf 29999889997199999998337-----8899766-----99989738
Q 000511 1247 TQVGIVGRTGAGKSSILNALFRL-----TPICGGQ-----ILVDGLNI 1284 (1455)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl-----~~~~~G~-----I~IDG~di 1284 (1455)
-||.++|..|+|||||++.+..- +.|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=80.61 E-value=0.61 Score=19.90 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.60 E-value=0.44 Score=20.99 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999968998478999998648668
Q 000511 636 VAVIGEVGSGKSSLLNSILGEMML 659 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~~~ 659 (1455)
+.+.||.|+||||+.+++.+|+..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898897998788899999998498
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=80.60 E-value=0.54 Score=20.30 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999988999719999999833788
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.+.|.|..||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=80.57 E-value=0.57 Score=20.12 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=28.4
Q ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCEEEECCC
Q ss_conf 4741996999996899847899999864866887089970919998488
Q 000511 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1455)
Q Consensus 628 l~i~~G~l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~g~iayv~Q~ 676 (1455)
++-++-..++++||.|+||||.+.-|.-.+. .+| .+|+.++=+
T Consensus 4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~D 46 (211)
T d2qy9a2 4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQG-----KSVMLAAGD 46 (211)
T ss_dssp CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH-TTT-----CCEEEECCC
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEECC
T ss_conf 7899997999989999998999999999999-779-----947998232
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.52 E-value=0.69 Score=19.45 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEECCCCCHHHHHHHHHHC
Q ss_conf 999988999719999999833
Q 000511 1248 QVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1455)
||.++|..|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.43 E-value=0.99 Score=18.19 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=35.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 9988998565769899989999999998259947998626814674
Q 000511 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1416 (1455)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~Te~~i~~~i~~~f~~~TvI~IaHRl~ti~ 1416 (1455)
+.+++++||+-. +..+....+.+.+.+...++.+|+++++.+.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-454311122100221356643000102111002
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.40 E-value=0.58 Score=20.08 Aligned_cols=176 Identities=19% Similarity=0.215 Sum_probs=94.6
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCCEEEECCCC-CCCCCHHHHC--CCCCCCCH
Q ss_conf 99998899971999999983378--8997669998973899995877146389807777-7777588842--85999992
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNL--DPFHMNDD 1322 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR~~i~~IpQdp~-lf~gTIReNL--dp~~~~sd 1322 (1455)
.|+|+|..|+|||||+.+|+..- ....|++. +|....+...++-.+.+++-+.-.. .+.| .+-|+ .|++..=-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHHCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7799999990099999968994154169999993699999999988259988998---5657698999899999999982
Q 000511 1323 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISSE 1399 (1455)
Q Consensus 1323 ~ei~~aL~~~~L~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiL---DEaTS~lD~~Te~~i~~~i~~~ 1399 (1455)
.+...++..+... -.+-+.-.....+-++.+-.|+. .+.|.++++ |.+ + |.. +.+ +.+++.
T Consensus 82 ~e~~~al~~~D~a---------vlvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~~l-~~~~~~ 145 (267)
T d2dy1a2 82 GEIRGALEAADAA---------LVAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--ALL-EDLRST 145 (267)
T ss_dssp HHHHHHHHHCSEE---------EEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--HHH-HHHHHH
T ss_pred HHHHHHHCCCCCE---------EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--HHH-HHHHHH
T ss_conf 5565431246733---------89842357742115788776554-044310133320222-2--101--234-468887
Q ss_pred CCCCEEEEECCC----HHHHHH--HCEEEEEECCEEEEECCHHHHHCC
Q ss_conf 599479986268----146741--087989939859896794588502
Q 000511 1400 CKGMTVITIAHR----ISTVLN--MDEILILDHGHLVEQGNPQTLLQD 1441 (1455)
Q Consensus 1400 f~~~TvI~IaHR----l~ti~~--~D~I~vld~GrivE~g~p~eLl~~ 1441 (1455)
+..+.-+.+-.. ...+.+ ..+.+..++|.-.+..-|.++.+.
T Consensus 146 lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~~ 193 (267)
T d2dy1a2 146 LGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERER 193 (267)
T ss_dssp HCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHH
T ss_pred HCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHHH
T ss_conf 465867686002588326876247654899618987454077778999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.34 E-value=0.42 Score=21.17 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996899847899999864866
Q 000511 636 VAVIGEVGSGKSSLLNSILGEMM 658 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~~ 658 (1455)
..+.||.|+||||+.+++..++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.31 E-value=0.37 Score=21.62 Aligned_cols=22 Identities=23% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968998478999998648
Q 000511 635 LVAVIGEVGSGKSSLLNSILGE 656 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe 656 (1455)
-++++|+.|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=80.30 E-value=0.37 Score=21.66 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 999996899847899999864866887089
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v 664 (1455)
-+.|+|++|||||+++..++-+.-...+.+
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 589990799968999999999998479988
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.16 E-value=0.69 Score=19.47 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=23.3
Q ss_pred EEEEECCCCCHHHHHHHHHH---CCCCCCCCEE
Q ss_conf 99998899971999999983---3788997669
Q 000511 1248 QVGIVGRTGAGKSSILNALF---RLTPICGGQI 1277 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~---rl~~~~~G~I 1277 (1455)
.|+|-||.||||+|+.+.|. ++...+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 899779998898999999999969908988899
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.15 E-value=0.46 Score=20.86 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|+.||||||+.+.+...+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=80.14 E-value=0.78 Score=19.03 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCHHHHHHHHHHC
Q ss_conf 975892999988999719999999833
Q 000511 1242 TIEGGTQVGIVGRTGAGKSSILNALFR 1268 (1455)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1455)
-+++|+.+-|.|++|+|||++..-+.-
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 862885999991799998999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.12 E-value=0.66 Score=19.60 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 892999988999719999999833788
Q 000511 1245 GGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=0.72 Score=19.33 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.3
Q ss_pred EEEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99998899971999999983378
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1455)
||.++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.10 E-value=0.63 Score=19.79 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 999988999719999999833788
Q 000511 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1455)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1455)
+|.++|..||||||+.+.|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 489988999988999999999849
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.10 E-value=0.6 Score=19.96 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=28.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC----CCEEEECCC
Q ss_conf 999996899847899999864866887089970----919998488
Q 000511 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----GSIAYVPQV 676 (1455)
Q Consensus 635 l~~IvG~vGsGKSTLL~allGe~~~~~G~v~~~----g~iayv~Q~ 676 (1455)
=+.++||+|||||-|.+.|.+++.. --+.++ ..++|+..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEEECCEEECC
T ss_conf 4799899998899999999987389--8898625511411111044
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.10 E-value=0.65 Score=19.66 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689984789999986486
Q 000511 636 VAVIGEVGSGKSSLLNSILGEM 657 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~allGe~ 657 (1455)
++++|..|+|||||++.+++.-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999939899999998299
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.06 E-value=0.69 Score=19.47 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999689984789999986
Q 000511 636 VAVIGEVGSGKSSLLNSIL 654 (1455)
Q Consensus 636 ~~IvG~vGsGKSTLL~all 654 (1455)
++|.||.||||||+.+.|.
T Consensus 3 I~i~G~pGsGKsT~a~~La 21 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLA 21 (181)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998899999799999999
|