Citrus Sinensis ID: 000519

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------145
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQHSDLLDNSIDYPRKIAACSDKSRKQQQSWLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHEPSS
cccHHHHHHHHHHHHHHHHHHcEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEEEEEEEccEEEEccccEEEcccEEEEcccccEEEEEEEEEcEEEcccEEEEEEEEEEEEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEEEcccccEEEEEEccccccccccccccccEEEcccccEEEEccccccccccccccccccccEEEEEEEEcEEEEEccEEEEEEEEEEEEEEccEEEEEcccccccccHHHHHHHHcccccEEEEEccEEEEEEEEEEcccEEEEEccccEEEEEEEEEEEEEEEEEcccEEEEcccEEEccccEEEEcccccEEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEEEcEEccccEEEEEEEEEEEcccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEcccccccccccccccEEEEEEEcccccccccccccccEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccHHHHccccEEEEEccccEEEEEEEEEccccccccHHHHHcccccEEEEEcccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHccccccccccEEEEEEEEEcccccccEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccEEEccccccHHHHccccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
cccHHHHHHHHHHEEEcEEEEEEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHccccccccEEEEEEEEEEEcccEEEEEccEEEEcccEEEEEccccEEEEEEEEcEEEEcccEEEEEEEEEEEEEEEEEccccEEEEccccccccccccccccccccccccccccccEEEcccccccccccEEEHHcccccccccccccccccEcccccccccEEEEEEEEEEEEcEEEEEcccccccccccccccEEEEEEEEEEccEEEEEccccccccccccEEEEEEEEcccccEEEEEccccccccccccccccEEcccccEEEEEcccccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEEEEEEEEcccEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEEEcEEEEEEcccEEEEcccccEccccEEEccccccHHHHHEEEEHHEEEEEEccccEEEcccccccccccccHHHcccccccHHHccccccccccccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEccccccccccccEEcccccccccccccccccEEcccEEcccccccccccccEccccccccccccccccccEEEEEcccccccccEEEEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccEEEEEEccccccccEEEEEEEEEEEEEccccccccccccccccEccccccccccEEEEEccccccEcccccccHHHcccccccccccccEEEEEcccccccccccEEccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHHcHHHHHcHccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHccEEcccccHEEEEHHHHcccccccccccHHHHccccEEEEEEccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHccEEEEEEEEEccccccEEEEEEEEEccccccccccccccccccccccccEcccccHHcccccccccccccHHHHcccccccEEEcccHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHEEEEcccc
MHPFLMRSYLWWCILLGYLYVStlsfssgqyLDRAIQSgnwlhdlgsdlkddfksttlNFVEISilpsqlndsvscgdlegvgslnttcllnsnlylnydlyiygtgnleilpkisivcpvegckitfnmsgninmGQYAAIVAGSVVVSAANLTMDLnssinttslgglppsptsgtpvgydgaggghggrgaschknnktsfwggDVYAWStlsepwsygskgggtsaeyqyggngggRIKLLVKDMLYlngsvtaeggdgglkggggsggSIYVLAVKLKGYgfisaaggrgwggggggrvsldcysiqedikvtvhggfsigcpenagaagtNFNAYLRSLRvsndnvttetetplldfptrpiwsnvfvENNAKVLVPLLWTRVQVRGQIslyrggsiifglseypvsefELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKIlidgggntiVTTSVLEVRNLVVLTENSvissnanlglygqgllqltgqgdaikgqrLSLSLFYNItvgtgsllqapldddasrnvVTESlckrqtcpidlinppddchvnytlSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASelgcsegmgkgiyshgagsgaghggrggsgffngrlingghkygnadlpcelgsgaegpnesyapaigggmivmgsiqwplfrldiygsvkadgesvgkktingnssligglgggsgGTILLFLQEltlednssvsvvggsggppggggggggrvhfhwskidsgveyvpvatisgsinssggaadntglfgevgtvtgkkcpkglygtfckecpigtykdmegsdeslctpcslellprranfiyvrggvsqpfcpyecisekyrmpkcytpleelmytfggpwPFVLLLSCILVLLALLLSTLRIKlvgsspsyrehsierhsrhhfpyllslsevrgtraeetqSHVHRmyfmgpntfrepwhlpysppnaIIEIVYEDAFNRFIDEINsvaaydwweGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVkseydhsclrsCRSRAlykgmkvgatPDLMVAYIDFFLGGDEKRLDIVSIIQKRfpmciifggngsymspynlhnDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIdwinshgnpqlefhgvkielgwfqptasgyyQLGILIVAgdyslqnmqhsdlldnsidyprkiaacsdksRKQQQSWLYTNQSLSLKKitggingglinhTTVKYLEFKRDFLFPVSlllhntrpvgrqDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLplsllspfpaglnalfskeprrsSLTRIYALWNATSLSNIVVAFISGIchygfwfaqpsekaNTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIAnleigdyslfcpdpdafwahepss
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTEtetplldfptrpIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSllqapldddaSRNVVTESLckrqtcpidlinppdDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSinssggaadntGLFGEVGTVtgkkcpkglygTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVrggvsqpfcPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGsspsyrehsierhsrhhfpylLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQeyvkseydhsclrSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQHSDLLDNSIDYPRKIAACSDKSRKQQQSWLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHEPSS
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSlnttcllnsnlylnydlyiyGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYaaivagsvvvsaaNLTMDLNSSINttslgglppsptsgtpVgydgaggghggrgASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEggdgglkggggsggSIYVLAVKLKGYGFISAAggrgwggggggrVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANlglygqgllqltgqgDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYShgagsgaghggrggsgffngrLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTingnssligglgggsggTILLFLQELTLEDNssvsvvggsggppggggggggRVHFHWSKIDSGVEYVPVATisgsinssggAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVlllscilvllalllstlriklVGSSPSYrehsierhsrhhFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQHSDLLDNSIDYPRKIAACSDKSRKQQQSWLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMlladlsitlltllEFYWIslgaflavllvlplsllspfpaglNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHEPSS
***FLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWL***************LNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLN***************************************NNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSV******************IYVLAVKLKGYGFISAA**************LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELG********SYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTL**************************HFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGS*************RHHFPYLLSLSEVR********SHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQHSDLLDNSIDYPRKIAAC*********SWLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWA*****
*HPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLK**********************SVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLP********************************FWGGDVYAWSTLSEPW*****************NGGGRIKLLVKDMLYLNGSVTA***************SIYVLAVKLKGYGFISAA*********GGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAP********VVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKG*******************FFNGRLINGGHKYGNADLP*******************GGMIVMGSIQWPLFRLDIYGSVK***********************GSGGTILLFLQELTLE********************GGGRVHFHWSKIDSGVEYVPVATISG***************GEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIK********************************TRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDY*********************************************************HTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQP*********RREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHE***
MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQHSDLLDNSIDYPRKIAAC**********WLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHEPSS
*HPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGS***********AIGGGMIVMGSIQWPLFRLDIYGSVKADGESVG****************GSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSP*YREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSL*****************KIA*CSD*******SWLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQ***KANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHE***
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MHPFLMRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISILPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCKITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGAGGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLLVKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEELLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANLGLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIASELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTILLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINSSGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQHSDLLDNSIDYPRKIAACSDKSRKQQQSWLYTNQSLSLKKITGGINGGLINHTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFWAHEPSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1448
2241388201442 predicted protein [Populus trichocarpa] 0.993 0.997 0.783 0.0
2241263831337 predicted protein [Populus trichocarpa] 0.921 0.998 0.791 0.0
3564955721452 PREDICTED: uncharacterized protein LOC10 0.997 0.995 0.755 0.0
3565405751443 PREDICTED: uncharacterized protein LOC10 0.994 0.997 0.760 0.0
3574822731458 hypothetical protein MTR_5g013800 [Medic 0.989 0.982 0.725 0.0
4494615851440 PREDICTED: uncharacterized protein LOC10 0.979 0.985 0.739 0.0
449510816 1575 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.979 0.900 0.738 0.0
2977421701294 unnamed protein product [Vitis vinifera] 0.890 0.996 0.813 0.0
3341882361421 uncharacterized protein [Arabidopsis tha 0.945 0.963 0.719 0.0
2977945311417 glycine-rich protein [Arabidopsis lyrata 0.975 0.996 0.697 0.0
>gi|224138820|ref|XP_002326698.1| predicted protein [Populus trichocarpa] gi|222834020|gb|EEE72497.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2050 bits (5310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1133/1446 (78%), Positives = 1263/1446 (87%), Gaps = 7/1446 (0%)

Query: 6    MRSYLWWCILLGYLYVSTLSFSSGQYLDRAIQSGNWLHDLGSDLKDDFKSTTLNFVEISI 65
            M+  L+ CILLG+   ST+SF+ GQY    I SGN LH  GS   +  +S T ++V+   
Sbjct: 1    MQWQLFCCILLGFFCASTISFAPGQYEGGGIWSGNGLHSSGSVSSNHSRSGTSSYVKTLK 60

Query: 66   LPSQLNDSVSCGDLEGVGSLNTTCLLNSNLYLNYDLYIYGTGNLEILPKISIVCPVEGCK 125
                LN SVSC +LEGVGSLNTTC++NSNLYLN DLYIYGTGNLEI+P +SIVCP+EGC 
Sbjct: 61   FSLPLNSSVSCEELEGVGSLNTTCVVNSNLYLNSDLYIYGTGNLEIIPHVSIVCPIEGCM 120

Query: 126  ITFNMSGNINMGQYAAIVAGSVVVSAANLTMDLNSSINTTSLGGLPPSPTSGTPVGYDGA 185
            +T NM+GN+N+GQ+AAI+AGSVV SAANLTMD +SSINTT+LGG PP  TSGTPVG DG 
Sbjct: 121  VTVNMTGNVNIGQHAAIIAGSVVFSAANLTMDSHSSINTTALGGSPPPQTSGTPVGDDGG 180

Query: 186  GGGHGGRGASCHKNNKTSFWGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGRIKLL 245
            GGGHGGRGASC K NKTS WGGDVYAWSTL+EPWSYGSKGGGTS++ + GGNGGGR+KL 
Sbjct: 181  GGGHGGRGASCLKRNKTSNWGGDVYAWSTLAEPWSYGSKGGGTSSQNKCGGNGGGRVKLQ 240

Query: 246  VKDMLYLNGSVTAEGGDGGLKGGGGSGGSIYVLAVKLKGYGFISAAGGRGWGGGGGGRVS 305
            VK++LYLNGSV AEGGDGGL GGGGSGGSI+V A    GYG ISAAGGRGWGGGGGGRVS
Sbjct: 241  VKEILYLNGSVAAEGGDGGLNGGGGSGGSIFVHA----GYGTISAAGGRGWGGGGGGRVS 296

Query: 306  LDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLLDFPT 365
            LDCYSIQED+KVTVHGG SIGCP NAGAAGT FNA L SLRVSND V TETETPLLDFPT
Sbjct: 297  LDCYSIQEDVKVTVHGGLSIGCPGNAGAAGTFFNADLLSLRVSNDYVMTETETPLLDFPT 356

Query: 366  RPIWSNVFVENNAKVLVPLLWTRVQV-RGQISLYRGGSIIFGLSEYPVSEFELVAEELLM 424
              +WSNVFVEN AKVLVPL+W+RVQV RGQISLYRGGSI+FGLSE+PVSEFELVAEELLM
Sbjct: 357  MTLWSNVFVENYAKVLVPLVWSRVQVVRGQISLYRGGSIVFGLSEFPVSEFELVAEELLM 416

Query: 425  SDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSNANL 484
            SDS+IKVFGAFRVAIKMLLMWNSKI IDGGGNT+VT SVLEVRNL+VL   SV+ SNANL
Sbjct: 417  SDSIIKVFGAFRVAIKMLLMWNSKIEIDGGGNTVVTASVLEVRNLIVLRAGSVLGSNANL 476

Query: 485  GLYGQGLLQLTGQGDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCKRQT 544
            GLYGQGLL+LTG GD I+GQRLSLSLFYNITVG GSLLQAPLDDDASR+VVT+SLC+  T
Sbjct: 477  GLYGQGLLKLTGHGDTIRGQRLSLSLFYNITVGPGSLLQAPLDDDASRSVVTKSLCESHT 536

Query: 545  CPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMIIAS 604
            CPIDLI PPDDCHVNYTLSFSLQICRVE ++V+G+IKGSI+HI RARTII+DT G+I AS
Sbjct: 537  CPIDLITPPDDCHVNYTLSFSLQICRVEGLLVNGIIKGSIIHIHRARTIIIDTDGLITAS 596

Query: 605  ELGCSEGMGKGIYSHGAGSGAGHGGRGGSGFFNGRLINGGHKYGNADLPCELGSGAEGPN 664
            ELGC++G+GKG YS GAGSGAGHGGRGGSG FNG + NGG+KYGNADLPCELGSG +GPN
Sbjct: 597  ELGCNDGIGKGNYSKGAGSGAGHGGRGGSGCFNGIVSNGGNKYGNADLPCELGSGTQGPN 656

Query: 665  ESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTINGNSSLIGGLGGGSGGTI 724
            +SY   IGGGMIVMGSIQWPL RL++YGS+  DG+S  K ++N N+SLIGGLGG SGGT+
Sbjct: 657  QSYGNVIGGGMIVMGSIQWPLLRLNLYGSLMVDGQSFDKASVNSNASLIGGLGGASGGTV 716

Query: 725  LLFLQELTLEDNSSVSVVGGSGGPPGGGGGGGGRVHFHWSKIDSGVEYVPVATISGSINS 784
            LLFLQEL L + SS+SV GG+G P GGGGGGGGRVHFHW KID+G EYVPVA+ISGSINS
Sbjct: 717  LLFLQELMLAEKSSLSVRGGNGSPLGGGGGGGGRVHFHWYKIDTGDEYVPVASISGSINS 776

Query: 785  SGGAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLELLPR 844
            SGGA +N GLFGE GTVTGKKCPKGLYGTFCKECP+GT+KD++GSDESLC PCSL+LLP 
Sbjct: 777  SGGAGENGGLFGEEGTVTGKKCPKGLYGTFCKECPLGTFKDVDGSDESLCIPCSLDLLPN 836

Query: 845  RANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVLLLSCILVLLAL 904
            RANFI+VRGGVSQP CPY+CIS+KYRMP CYTPLEEL+YTFGGPWPF L+LS +LVLLAL
Sbjct: 837  RANFIHVRGGVSQPSCPYKCISDKYRMPNCYTPLEELVYTFGGPWPFALILSVLLVLLAL 896

Query: 905  LLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRAEETQSHVHRMYFMGPNT 964
            LLST RIKLVGS   Y   S+E  S HHFP+LLSLSEVRGTRAEE+QSHV+RMYFMGPNT
Sbjct: 897  LLSTARIKLVGSGKCYDASSVEHQSHHHFPHLLSLSEVRGTRAEESQSHVYRMYFMGPNT 956

Query: 965  FREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAYPCAWSWK 1024
            FREPWHLPY  PNAIIEIVYEDAFNRFID+INSVAAYDWWEGS+HSIL+VLAYPCAWSWK
Sbjct: 957  FREPWHLPYFLPNAIIEIVYEDAFNRFIDDINSVAAYDWWEGSVHSILSVLAYPCAWSWK 1016

Query: 1025 QWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRL 1084
            QWR+RNKIHRLQEYVKSEYDH CLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRL
Sbjct: 1017 QWRQRNKIHRLQEYVKSEYDHLCLRSCRSRALYKGMKVGATPDLMVAYIDFFLGGDEKRL 1076

Query: 1085 DIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDGLNAQLRT 1144
            DIVSIIQKRFPMCIIFGG+GSYMSPYNLH+D ++TNLLGQHVPATVW+ LV GLNAQLR 
Sbjct: 1077 DIVSIIQKRFPMCIIFGGDGSYMSPYNLHSDTLLTNLLGQHVPATVWNHLVAGLNAQLRI 1136

Query: 1145 VRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQN 1204
            VR GSIRSAL+PVIDWI SHGNPQLEFHGVK+ELGWFQ TASGYYQLG+L++ GDYSL +
Sbjct: 1137 VRHGSIRSALLPVIDWICSHGNPQLEFHGVKMELGWFQATASGYYQLGVLVMVGDYSLHS 1196

Query: 1205 MQHSDLLDNSIDYP-RKIAACSDKSRKQ-QQSWLYTNQSLSLKKITGGINGGLINHTTVK 1262
            +  SD +D     P R  A+C+ +S KQ QQ   Y +QSLS K++TGGINGGL+N  T+K
Sbjct: 1197 IHQSDWVDKGNGEPTRNSASCASRSLKQLQQERPYLSQSLSRKRMTGGINGGLLNEATLK 1256

Query: 1263 YLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAFLA 1322
             L+FKRDFL P+SLLLHNTRPVGRQD +QL ITIMLLADLS+TLLTLL+FYWISLGAFLA
Sbjct: 1257 SLDFKRDFLSPLSLLLHNTRPVGRQDALQLFITIMLLADLSVTLLTLLQFYWISLGAFLA 1316

Query: 1323 VLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALWNATSLSNIVVAFISGICHYGFWF 1382
            VLLVLPLSLLSPFPAGLNALFS+EPRR+S  R+YALWNATSLSNI VAF  GI HYGF  
Sbjct: 1317 VLLVLPLSLLSPFPAGLNALFSREPRRASHARVYALWNATSLSNIAVAFTCGIFHYGFSS 1376

Query: 1383 AQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFCPDPDAFW 1442
             +P ++ NTW IRRE + WWLL TIL++FKS+QAR VDWHIANLEI D SLFCPDPDAFW
Sbjct: 1377 LRPPDEENTWNIRREDNKWWLLSTILLLFKSVQARLVDWHIANLEIQDISLFCPDPDAFW 1436

Query: 1443 AHEPSS 1448
            AHE SS
Sbjct: 1437 AHESSS 1442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126383|ref|XP_002329540.1| predicted protein [Populus trichocarpa] gi|222870249|gb|EEF07380.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495572|ref|XP_003516649.1| PREDICTED: uncharacterized protein LOC100784489 [Glycine max] Back     alignment and taxonomy information
>gi|356540575|ref|XP_003538763.1| PREDICTED: uncharacterized protein LOC100781159 [Glycine max] Back     alignment and taxonomy information
>gi|357482273|ref|XP_003611422.1| hypothetical protein MTR_5g013800 [Medicago truncatula] gi|355512757|gb|AES94380.1| hypothetical protein MTR_5g013800 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461585|ref|XP_004148522.1| PREDICTED: uncharacterized protein LOC101208985 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449510816|ref|XP_004163767.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208985 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297742170|emb|CBI33957.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|334188236|ref|NP_199513.2| uncharacterized protein [Arabidopsis thaliana] gi|332008075|gb|AED95458.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297794531|ref|XP_002865150.1| glycine-rich protein [Arabidopsis lyrata subsp. lyrata] gi|297310985|gb|EFH41409.1| glycine-rich protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1448
TAIR|locus:21237621432 AT4G32920 "AT4G32920" [Arabido 0.945 0.956 0.418 9.1e-290
TAIR|locus:2123762 AT4G32920 "AT4G32920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2783 (984.7 bits), Expect = 9.1e-290, P = 9.1e-290
 Identities = 580/1387 (41%), Positives = 786/1387 (56%)

Query:    67 PSQLNDSVSC-GDLEGVGSXXXXXXXXXXXXXXXXXXXXGTGNLEILPKISIVCPVEGCK 125
             P   + SVSC  DL GVGS                    G GNL +LP + +VC   GC 
Sbjct:    51 PDDDDSSVSCVDDLGGVGSLDSTCKLVADLNLTRDLNITGKGNLHVLPGVRLVCQFPGCS 110

Query:   126 ITFNMSGNINMGQYXXXXXXXXXXXXXNLTMDLNSSINXXXXXXXXXXXXXXXXVXXXXX 185
             I+ N+SGN ++ +              N    L+S+++                      
Sbjct:   111 ISVNISGNFSLAENSSVIAGTFRLAAENAEFGLSSAVDTTGLAGEPPPDTSGTPEGVEGA 170

Query:   186 XXXXXXXXASCHKNNKTSF----WGGDVYAWSTLSEPWSYGSKGGGTSAEYQYGGNGGGR 241
                     A C  +  T      +GGDVY WS+L +P  YGS+GG TS E  YGG GGG 
Sbjct:   171 GGGYGGRGACCLSDTTTKIPEDVFGGDVYGWSSLEKPEIYGSRGGSTSNEVDYGGGGGGT 230

Query:   242 IKLLVKDMLYLNGSVTAEXXXXXXXXXXXXXXSIYVLAVKLKGYGFISAAXXXXXXXXXX 301
             + + +   + LNGSV A+              SI+V+A K+ G G +SA+          
Sbjct:   231 VAIEILGYISLNGSVLADGASGGVKGGGGSGGSIFVMAHKMAGNGRLSASGGDGYAGGGG 290

Query:   302 XXVSLDCYSIQEDIKVTVHGGFSIGCPENAGAAGTNFNAYLRSLRVSNDNVTTETETPLL 361
               VS+D YS   D K+  +GG S GCPENAGAAGT ++    SL + N N TT T+T LL
Sbjct:   291 GRVSVDIYSRHSDPKIFFNGGRSFGCPENAGAAGTLYDVISESLTIDNHNKTTYTDTLLL 350

Query:   362 DFPTRPIWSNVFVENNAKVLVPLLWTRVQVRGQISLYRGGSIIFGLSEYPVSEFELVAEE 421
             +FP   +++N+++ N AKV VPL W+RVQV+G ISL  GG + FGL  Y  SEFEL AEE
Sbjct:   351 EFPNHRLFTNLYIRNMAKVAVPLRWSRVQVQGLISLSNGGELNFGLPRYASSEFELFAEE 410

Query:   422 LLMSDSVIKVFGAFRVAIKMLLMWNSKILIDGGGNTIVTTSVLEVRNLVVLTENSVISSN 481
             LLMS+S IKV+GA R+ +K+ LM  S++ IDGGG TI+ TS+LE+ NL+VL E+SVI SN
Sbjct:   411 LLMSNSAIKVYGALRMTVKVFLMLKSRMFIDGGGVTILGTSMLEISNLLVLKESSVIQSN 470

Query:   482 ANXXXXXXXXXXXXXXXDAIKGQRLSLSLFYNITVGTGSLLQAPLDDDASRNVVTESLCK 541
              N               D I+ QRL LSLFY+I VG G++L+ PL + ++  +  +  C+
Sbjct:   471 GNLGVHGQGLLNLTGTGDTIEAQRLILSLFYSIQVGAGAVLRGPLQNASTGGLTPKLYCQ 530

Query:   542 RQTCPIDLINPPDDCHVNYTLSFSLQICRVEDIVVSGLIKGSIVHIQRARTIIVDTYGMI 601
             RQ CP++L++PP+DC+VN +L F+LQICRVEDI V GLIKGS++    ART++V + G I
Sbjct:   531 RQDCPVELLHPPEDCNVNSSLPFTLQICRVEDITVEGLIKGSVIQFHLARTVLVRSSGTI 590

Query:   602 IASELGCSEGMGKGIYSXXXXXXXXXXXXXXXXX-XXXXLINGGHKYGNADLPCELGSGA 660
              A  +GC  G+G G +                        I GG  YGNADLPCELGSG+
Sbjct:   591 SADGMGCKGGVGTGRFLRSGIGSGGGHGGKGGSGCYNHTCIEGGESYGNADLPCELGSGS 650

Query:   661 EGPNESYAPAIGGGMIVMGSIQWPLFRLDIYGSVKADGESVGKKTXXXXXXXXXXXXXXX 720
              G  ES     GGG+IV+GS++ PL  L + GS+  DGES  +KT               
Sbjct:   651 -GNEESTDSVAGGGIIVLGSLEHPLSSLSLEGSITTDGESP-RKTLKGLSNSSLGPGGGS 708

Query:   721 XXTILLFLQELTLEDNXXXXXXXXXXXXXXXXXXXXXRVHFHWSKIDSGVEYVPVATXXX 780
               T+LLFL+ L +  +                     R+HFHWS I +G  Y PVA    
Sbjct:   709 GGTVLLFLRTLEIGRSAILSSIGGNGSLKGGGGGSGGRIHFHWSDIPTGDVYHPVAIVKG 768

Query:   781 XXXXXXXAADNTGLFGEVGTVTGKKCPKGLYGTFCKECPIGTYKDMEGSDESLCTPCSLE 840
                            G  GT+TGK CP+GLYG FC+ECP GTYK++ GSD++LC  C   
Sbjct:   769 RVYVRGGMGIIEDNIGGNGTLTGKACPEGLYGLFCEECPSGTYKNVTGSDKALCHLCPAN 828

Query:   841 LLPRRANFIYVRGGVSQPFCPYECISEKYRMPKCYTPLEELMYTFGGPWPFVXXXXXXXX 900
              +P RA ++ VRGGV++  CPY+CIS++Y MP CYT LEEL+YTFGGPW F         
Sbjct:   829 DIPHRAVYVTVRGGVAETPCPYKCISDRYHMPHCYTTLEELIYTFGGPWLFGVLLVVVLL 888

Query:   901 XXXXXXXXXXXXXVGSSPSYXXXXXXXXXXX--XFPYLLSLSEVRGT-RAEETQSHVHRM 957
                          V     +              FP+L SL+EV  T R EE+Q H+HR+
Sbjct:   889 LLALVFSVARMKFVSGDELHGSAPTQHGSQIDHSFPFLESLNEVMETSRVEESQGHMHRI 948

Query:   958 YFMGPNTFREPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAYDWWEGSIHSILTVLAY 1017
             YF+GPNTF EPWHL ++PP  I EIVYE AFN F+DE+N +AAY WWEG+I+ +L+VL Y
Sbjct:   949 YFLGPNTFSEPWHLSHTPPEEIKEIVYEAAFNGFVDEVNVIAAYQWWEGAIYIMLSVLVY 1008

Query:  1018 PCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGMKVGATPDLMVAYIDFFL 1077
             P AWSW+Q RRR K  +L+++V+SEYDHSCLRSCRSRALY+G+KV ATPDLM+A++DFFL
Sbjct:  1009 PLAWSWQQSRRRLKFQKLRDFVRSEYDHSCLRSCRSRALYEGLKVAATPDLMLAHLDFFL 1068

Query:  1078 GGDEKRLDIVSIIQKRFPMCIIFGGNGSYMSPYNLHNDAMMTNLLGQHVPATVWSRLVDG 1137
             GGDEKR D+   + +R PM +IFGG+GSYM+ Y+L +D ++T+LL Q VP T W R V G
Sbjct:  1069 GGDEKRSDLPPQVHQRLPMPLIFGGDGSYMAYYSLQSDDILTSLLSQLVPPTTWYRFVAG 1128

Query:  1138 LNAQLRTVRQGSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVA 1197
             LNAQLR V+QG +RS    V+ WI +HGNP L+ HGV+++L  FQ  +S   Q GIL+  
Sbjct:  1129 LNAQLRLVQQGKLRSTFRSVMRWIETHGNPALKRHGVRVDLARFQALSSSSCQYGILVHT 1188

Query:  1198 GDYSLQNMQHSDLLDNSIDYPRKIAACSDKSRKQQQSWLYTNQSLSLKKITGGINGGLIN 1257
                 + + +  D  +    +  +I   S   R+  Q      +S  +  +     G +I+
Sbjct:  1189 IADEVASTRSDDETEQQHPWGTQIENHSGDFRENFQPL----RS-EINHVRHQECGEIID 1243

Query:  1258 HTTVKYLEFKRDFLFPVSLLLHNTRPVGRQDTIQLLITIMXXXXXXXXXXXXXEFYWIXX 1317
               ++++L+ ++D L  +S L+HNT+PVG QD + L+I+++             + Y I  
Sbjct:  1244 IGSLQFLKEEKDVLSLISFLIHNTKPVGHQDLVGLVISVLLLGDLTLTLLTLLQLYSISL 1303

Query:  1318 XXXXXXXXXXXXXXXXXXXXXXNALFSKEPRRS-SLTRIYALWNATSLSNIVVAFISGIC 1376
                                   +ALFS  PRRS S TR+YALWN TSL N+VVAF+ G  
Sbjct:  1304 LEVFLAMFILPLSIIFPFPAGVSALFSHGPRRSASRTRVYALWNVTSLVNVVVAFVCGYV 1363

Query:  1377 HY-GFWFAQPSEKANTWFIRREGDNWWLLPTILVIFKSIQARFVDWHIANLEIGDYSLFC 1435
             HY G    +       W I  + + WW+ P  L + K +Q++ V+WH+ANLEI DYSL+ 
Sbjct:  1364 HYHGSSSGKKIPYLQPWNISMDENEWWIFPVALFLCKVLQSQLVNWHVANLEIQDYSLYS 1423

Query:  1436 PDPDAFW 1442
              D + FW
Sbjct:  1424 DDSELFW 1430


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1448      1206   0.00097  123 3  11 22  0.38    34
                                                     39  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  637 (68 KB)
  Total size of DFA:  603 KB (2267 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  85.35u 0.12s 85.47t   Elapsed:  00:00:05
  Total cpu time:  85.35u 0.12s 85.47t   Elapsed:  00:00:05
  Start:  Tue May 21 13:35:57 2013   End:  Tue May 21 13:36:02 2013
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015837001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (1443 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1448
KOG0196996 consensus Tyrosine kinase, EPH (ephrin) receptor f 96.13
PF0769948 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot 95.99
PF10256118 Erf4: Golgin subfamily A member 7/ERF4 family; Int 94.19
PF0756254 NCD3G: Nine Cysteines Domain of family 3 GPCR; Int 90.77
cd0018598 TNFR Tumor necrosis factor receptor (TNFR) domain; 90.62
PHA02637127 TNF-alpha-receptor-like protein; Provisional 89.34
PHA02637127 TNF-alpha-receptor-like protein; Provisional 84.73
PF0769948 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Prot 82.87
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms] Back     alignment and domain information 
Probab=96.13  E-value=0.0054  Score=77.44  Aligned_cols=61  Identities=36%  Similarity=0.790  Sum_probs=44.0

Q ss_pred             cCCCCCcc----CccceeCCCCccccCCCCCCCCCccCCCCCCCCccceEEeeCCccCCCCCcccccCcccC------Cc
Q 000519          804 KKCPKGLY----GTFCKECPIGTYKDMEGSDESLCTPCSLELLPRRANFIYVRGGVSQPFCPYECISEKYRM------PK  873 (1448)
Q Consensus       804 k~CP~G~y----G~fC~eCP~GtYK~~sGs~~~~C~pCp~~~~p~ra~~iyv~~G~~~~~CpY~C~sdk~~~------p~  873 (1448)
                      =-|-+||.    +.-|+.||.||||...+  ..+|.+||.+....       ..  ..++|.  |..++|+.      --
T Consensus       261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~-------~e--ga~~C~--C~~gyyRA~~Dp~~mp  327 (996)
T KOG0196|consen  261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS-------SE--GATSCT--CENGYYRADSDPPSMP  327 (996)
T ss_pred             eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC-------CC--CCCccc--ccCCcccCCCCCCCCC
Confidence            46899983    66799999999998764  47899999855322       12  236776  88888865      24


Q ss_pred             CCch
Q 000519          874 CYTP  877 (1448)
Q Consensus       874 ClTp  877 (1448)
                      |.+|
T Consensus       328 CT~P  331 (996)
T KOG0196|consen  328 CTRP  331 (996)
T ss_pred             CCCC
Confidence            7665

>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4 Back     alignment and domain information
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains Back     alignment and domain information
>PHA02637 TNF-alpha-receptor-like protein; Provisional Back     alignment and domain information
>PHA02637 TNF-alpha-receptor-like protein; Provisional Back     alignment and domain information
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1448
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.6 bits (151), Expect = 1e-09
 Identities = 78/593 (13%), Positives = 167/593 (28%), Gaps = 179/593 (30%)

Query: 890  PFVLLLSC--ILVLLALLLSTLRIKLVGSSPSYREHSIERHSRHHFPYLLSLSEVRGTRA 947
             FV    C  +  +   +LS   I  +  S      ++    R     L      +    
Sbjct: 28   AFVDNFDCKDVQDMPKSILSKEEIDHIIMSK----DAVSGTLR-----LFWTLLSKQEEM 78

Query: 948  EETQSHVHRMYFMG----PN-TF-REPWHLPYSPPNAIIEIVYEDAFNRFIDEINSVAAY 1001
                  V +  F+      N  F   P       P +++  +Y +  +R  ++    A Y
Sbjct: 79   ------VQK--FVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 1002 DWWEGSIHSILTVLAYPCAWSWKQWRRRNKIHRLQEYVKSEYDHSCLRSCRSRALYKGM- 1060
            +                         R     +L++ +        LR  ++  +  G+ 
Sbjct: 130  NVS-----------------------RLQPYLKLRQALLE------LRPAKNVLID-GVL 159

Query: 1061 ---------------KVGATPDLMVAYIDFFLGGDEKRLDIVSIIQKRFPMCIIFGGN-- 1103
                           KV    D  + +++           ++ ++QK   +      N  
Sbjct: 160  GSGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQK---LLYQIDPNWT 214

Query: 1104 ----GSYMSPYNLHN-DAMMTNLLGQHVPAT-------VWS-RLVDGLNAQ---LRTVRQ 1147
                 S      +H+  A +  LL              V + +  +  N     L T R 
Sbjct: 215  SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 1148 GSIRSALVPVIDWINSHGNPQLEFHGVKIELGWFQPTASGYYQLGILIVAGDYSLQNMQH 1207
                     V D+++               +    P         +L+   D   Q++  
Sbjct: 275  KQ-------VTDFLS--AATTTHISLDHHSMT-LTPDEV----KSLLLKYLDCRPQDLPR 320

Query: 1208 SDLLDNSIDYPRKIAACSDKSRKQQQSWLYTNQSLSLKKITGGINGGLINHTTVKYL--- 1264
              L  N    PR+++  ++  R    +W      ++  K+T  I       +++  L   
Sbjct: 321  EVLTTN----PRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIE------SSLNVLEPA 369

Query: 1265 EFKRDF----LFPVSLLLHNTRPVGRQDTIQLLITIMLLADLSITLLTLLEFYWISLGAF 1320
            E+++ F    +FP                              I    LL   W  +   
Sbjct: 370  EYRKMFDRLSVFP--------------------------PSAHIPT-ILLSLIWFDVIKS 402

Query: 1321 LAVLLVLPLSLLSPFPAGLNALFSKEPRRSSLTRIYALW--------NATSLSNIVVAFI 1372
              +++V  L   S        L  K+P+ S++  I +++        N  +L   +V   
Sbjct: 403  DVMVVVNKLHKYS--------LVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 1373 SGICHYGFWFAQPSEKANTWF--------IRREGDNWWLLPTILVIFKSIQAR 1417
            +    +      P      ++             +   L   + + F+ ++ +
Sbjct: 454  NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1448
d1jmab156 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (H 0.003
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Cellular receptor HveA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 10/43 (23%)

Query: 804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLCTPC 837
            KC  G           GT C+ CP GTY          C  C
Sbjct: 14  PKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSK-CLQC 55

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1448
d1sg1x342 Low affinity neurotrophin receptor p75NTR {Rat (Ra 92.67
d1exta159 Tumor necrosis factor (TNF) receptor {Human (Homo 89.37
d1jmab156 Cellular receptor HveA {Human (Homo sapiens) [TaxI 88.38
d1jmab156 Cellular receptor HveA {Human (Homo sapiens) [TaxI 88.22
d2heyr354 Tumor necrosis factor receptor superfamily member 81.45
>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Low affinity neurotrophin receptor p75NTR
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.67  E-value=0.024  Score=30.37  Aligned_cols=30  Identities=40%  Similarity=0.808  Sum_probs=23.8

Q ss_pred             CCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             68999866---------85430189994236779999877
Q 000519          804 KKCPKGLY---------GTFCKECPIGTYKDMEGSDESLC  834 (1448)
Q Consensus       804 k~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC  834 (1448)
                      +.||+|+.         ...|++||.|||.+++ |+.+.|
T Consensus         3 s~CppG~GV~~~gt~~~DT~C~~C~~GtFSd~~-Ss~~~C   41 (42)
T d1sg1x3           3 SVCEVGSGLVFSCQDKQNTVCEECPEGTYSDEA-NHVDPC   41 (42)
T ss_dssp             CCBCTTEEEEECCBTTBCCEEEECCTTEECCSC-BSSCCC
T ss_pred             CCCCCCCCEEECCCCCCCCEEEECCCCCCCCCC-CCCCCC
T ss_conf             638898585243868889344389398644867-775756
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure