Citrus Sinensis ID: 000521
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1446 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SKX0 | 1410 | ABC transporter C family | yes | no | 0.940 | 0.964 | 0.648 | 0.0 | |
| Q5T3U5 | 1492 | Multidrug resistance-asso | yes | no | 0.837 | 0.811 | 0.392 | 0.0 | |
| Q8R4P9 | 1501 | Multidrug resistance-asso | yes | no | 0.864 | 0.832 | 0.377 | 0.0 | |
| Q63120 | 1541 | Canalicular multispecific | no | no | 0.774 | 0.726 | 0.362 | 0.0 | |
| B2RX12 | 1523 | Canalicular multispecific | no | no | 0.789 | 0.749 | 0.353 | 0.0 | |
| Q92887 | 1545 | Canalicular multispecific | no | no | 0.773 | 0.724 | 0.364 | 0.0 | |
| O15438 | 1527 | Canalicular multispecific | no | no | 0.789 | 0.747 | 0.354 | 0.0 | |
| O35379 | 1528 | Multidrug resistance-asso | no | no | 0.791 | 0.749 | 0.351 | 0.0 | |
| Q5F364 | 1525 | Multidrug resistance-asso | no | no | 0.790 | 0.749 | 0.351 | 0.0 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | no | no | 0.792 | 0.748 | 0.352 | 0.0 |
| >sp|Q9SKX0|AB13C_ARATH ABC transporter C family member 13 OS=Arabidopsis thaliana GN=ABCC13 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 1801 bits (4665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1421 (64%), Positives = 1114/1421 (78%), Gaps = 61/1421 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDC-----NTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 252
+ S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 253 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 312
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 313 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 372
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 373 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 432
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 433 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 492
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 493 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 552
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 553 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 612
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 613 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 672
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 673 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 792
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 793 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 850
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 851 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 910
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 911 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 971 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1030
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1031 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1090
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1091 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1150
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1151 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1210
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1331 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LV
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILV 1386
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q5T3U5|MRP7_HUMAN Multidrug resistance-associated protein 7 OS=Homo sapiens GN=ABCC10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/1308 (39%), Positives = 734/1308 (56%), Gaps = 97/1308 (7%)
Query: 178 ASSRRSSIEESLLSVDGDVEEDCNTDSSYW-DLMAFKSIDSVMNRGVIKQL-DFEDLLGL 235
R +E LL D E + D W ++ + ++ RG +L +D+ L
Sbjct: 193 GGPREPWAQEPLLPED--QEPEVAEDGESWLSRFSYAWLAPLLARGACGELRQPQDICRL 250
Query: 236 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 295
P + P+ + WQ L RA+ A+G Y+ LGLLK+V +GF+GP
Sbjct: 251 PHRLQPTYLARVFQAHWQ-------EGARLWRALYGAFGRCYLALGLLKLVGTMLGFSGP 303
Query: 296 LLLNKLIKFLQQGSGHLD-GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII 354
LLL+ L+ FL++G L G + A+ L ++L + QY + + K+ L+ R +++ I+
Sbjct: 304 LLLSLLVGFLEEGQEPLSHGLLYALGLAGGAVLGAVLQNQYGYEVYKVTLQARGAVLNIL 363
Query: 355 YQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVK 414
Y K L + S GE + D++R +N A SFH+AW LP Q+ + LYLLY QV
Sbjct: 364 YCKALQL---GPSRPPTGEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVG 420
Query: 415 FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQI 474
AFV GL + +LL+PVNK IA I + ++M++ KD R++ E+L+ IR +K GWEQ
Sbjct: 421 VAFVGGLILALLLVPVNKVIATRIMASNQEMLQHKDARVKLVTELLSGIRVIKFCGWEQA 480
Query: 475 FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTC 534
+ + R+ E+ L KYLDA CV+ WA P + S+ F + LMGHQL A VFT
Sbjct: 481 LGARVEACRARELGRLRVIKYLDAACVYLWAALPVVISIVIFITYVLMGHQLTATKVFTA 540
Query: 535 LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 594
LAL LI PLN+FPWVINGL++A +S+ R+ FL + + + + P+ S L
Sbjct: 541 LALVRMLILPLNNFPWVINGLLEAKVSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTVLE- 599
Query: 595 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 654
+ A SW + + + L + KG LV ++G+VG GKSSLL +I
Sbjct: 600 ---------LHGALFSWDPVGTSLETFISH---LEVKKGMLVGIVGKVGCGKSSLLAAIA 647
Query: 655 GEMMLTHGSIHASG---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 711
GE+ G + G Q PWI TIRDNILFGK +D Q Y E L+AC L+ D
Sbjct: 648 GELHRLRGHVAVRGLSKGFGLATQEPWIQFATIRDNILFGKTFDAQLYKEVLEACALNDD 707
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+S++ GD +GEKGV LSGGQRAR+ALARAVY ++Y+LDD L+AVDA VA +L
Sbjct: 708 LSILPAGDQTEVGEKGVTLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHLLHR 767
Query: 772 AIMGPHMLQ-KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTN 828
I+G ML TR+LCTH + + AD V++M+ G++ G +++ V W+ N
Sbjct: 768 CILG--MLSYTTRLLCTHRTEYLERADAVLLMEAGRLIRAGPPSEILPLVQAVPKAWAEN 825
Query: 829 --EFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYK 886
E D++ Q K+ L +E+ + +++ E +KEG V L VY+
Sbjct: 826 GQESDSATAQSVQN-----PEKTKEGLEEEQST------SGRLLQEESKKEGAVALHVYQ 874
Query: 887 NYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT----TGSSQTKYSTS------- 935
Y K G + L I S +LMQA+RN D WLS+W+ S + + STS
Sbjct: 875 AYWKAVGQGLALAILFSLLLMQATRNAADWWLSHWISQLKAENSSQEAQPSTSPASMGLF 934
Query: 936 -------------------------------FYLVVLCIFCMFNSFLTLVRAFSFAFGSL 964
FYL V NS TL+RA FA G+L
Sbjct: 935 SPQLLLFSPGNLYIPVFPLPKAAPNGSSDIRFYLTVYATIAGVNSLCTLLRAVLFAAGTL 994
Query: 965 RAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLL 1024
+AA +H LL +++ APV FF+ TP GRILNRFSSD+ DDSLPFILNILLAN GLL
Sbjct: 995 QAAATLHRRLLHRVLMAPVTFFNATPTGRILNRFSSDVACADDSLPFILNILLANAAGLL 1054
Query: 1025 GIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGS 1084
G+ VL + LLLL P +Y +Q YR++SRELRRL S++ SP+Y+ +TL G
Sbjct: 1055 GLLAVLGSGLPWLLLLLPPLSIMYYHVQRHYRASSRELRRLGSLTLSPLYSHLADTLAGL 1114
Query: 1085 STIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS 1144
S +RA + F + + L QR ++ WL +RLQL+ A ++S IA +A++
Sbjct: 1115 SVLRATGATYRFEEENLRLLELNQRCQFATSATMQWLDIRLQLMGAAVVSAIAGIALVQH 1174
Query: 1145 RGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQEEL 1203
+ L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+PQE
Sbjct: 1175 QQGL----ANPGLVGLSLSYALSLTGLLSGLVSSFTQTEAMLVSVERLEEYTCDLPQEPQ 1230
Query: 1204 CGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL 1263
L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GKSS+L
Sbjct: 1231 GQPLQLGTGWLTQGGVEFQDVVLAYRPGLPNALDGVTFCVQPGEKLGIVGRTGSGKSSLL 1290
Query: 1264 NALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1323
LFRL G++L+DG++ + LR + A++PQ PFLF G++R+NLDP ++ D
Sbjct: 1291 LVLFRLLEPSSGRVLLDGVDTSQLELAQLRSQLAIIPQEPFLFSGTVRENLDPQGLHKDR 1350
Query: 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+W L++CH+ E + ++G G S S+GQRQL+CLARALL +K+LC+DE TA
Sbjct: 1351 ALWQALKQCHLSEVITSMGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCIDEATA 1410
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+VD +T +LQ I TV+TIAHR++T+LN D +L+L G +V
Sbjct: 1411 SVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVV 1458
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Homo sapiens (taxid: 9606) |
| >sp|Q8R4P9|MRP7_MOUSE Multidrug resistance-associated protein 7 OS=Mus musculus GN=Abcc10 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 793 bits (2048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/1352 (37%), Positives = 756/1352 (55%), Gaps = 102/1352 (7%)
Query: 141 QLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDC 200
Q TF + L +CL++L + ++ + + + LS + E
Sbjct: 156 QRGTFLPPLLPGPLGRVCLLILQLAAVLAYGLGWAAPGGPQEPWTHDPFLSSESQETEVA 215
Query: 201 NTDSSYWDLMAFKSIDSVMNRGVIKQLD-FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCN 259
S+ ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 216 EDGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWK------ 269
Query: 260 CTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG---YV 316
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L YV
Sbjct: 270 -EGAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSHGLLYV 328
Query: 317 LAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQT 376
L +A G +++ + QY + + K+ L+ R ++++ +Y+K L + S GE+
Sbjct: 329 LGLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKALKL---GPSRPPTGEVLN 383
Query: 377 FMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 436
+ D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVNK IA
Sbjct: 384 LLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVNKVIAT 443
Query: 437 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYL 496
I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L KYL
Sbjct: 444 RIMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLRVIKYL 503
Query: 497 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLI 556
DA CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWVINGL+
Sbjct: 504 DAACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWVINGLL 563
Query: 557 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 616
++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 564 ESKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSWDPIGA 613
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGSIAYV 673
++ + + L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 614 SQKTFISH---LQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSKGFGLA 670
Query: 674 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV LSGG
Sbjct: 671 TQEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGVTLSGG 730
Query: 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 793
QRAR+ALARAVY +Y+LDD L+AVDA VA +L I+G + TR+LCTH + +
Sbjct: 731 QRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILG-VLSHTTRLLCTHRTEYL 789
Query: 794 SAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN-- 849
AD+V++M+ GQ+ G +++ V W+ +K+++ T+ S +
Sbjct: 790 ERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWA----------EKEQVATSGQSPSVC 839
Query: 850 KQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQA 909
E+++ +++ E + EG V L VY+ Y + G + I +S +LMQA
Sbjct: 840 DLERTTEEELEVEQSTCGCLVQEESKSEGAVALHVYRAYWRAMGSGLAAAILVSLLLMQA 899
Query: 910 SRNGNDLWLSYWVDT-----TGSSQTKYSTS----------------------------- 935
+RNG D WL++W+ GS + S S
Sbjct: 900 TRNGADWWLAHWLSQLKAGRNGSREDPASCSPGSTALFSPRLLLFSPGNLYTPLLSTPLH 959
Query: 936 -----------FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984
FYL+V NS TL+RA FA G+L+AA +H+ LL +++ APV
Sbjct: 960 KAASNGTADVHFYLIVYATIAGVNSLCTLLRAVLFAAGALQAAASLHHRLLHRLLMAPVT 1019
Query: 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044
F+D TP GR+LNRFSSD+ +DDSLPF+LNILLAN VGLLG+ VL + LLLL P
Sbjct: 1020 FYDSTPSGRVLNRFSSDVACVDDSLPFLLNILLANSVGLLGLLAVLGSGLPWLLLLLPPL 1079
Query: 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1104
F+Y +Q +YR++ RELRRL S++ SP+Y+ +TL G +RA + F + + +
Sbjct: 1080 SFVYYSVQGYYRASFRELRRLGSLTWSPLYSHLADTLAGLPVLRAAGATYRFEEENQRLL 1139
Query: 1105 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1164
L QR ++ WL +RLQL+ A ++S IA +A++ + L + PGLVGL LSY
Sbjct: 1140 ELNQRCQFASYATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLVLSY 1195
Query: 1165 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVPQE----ELCGYQSLSPDWPFQGLI 1219
A + LL +SSFT+TE MVS+ER+ EY DVPQE L W QG +
Sbjct: 1196 ALSLTGLLSGLVSSFTQTEAMMVSVERLEEYSCDVPQEPHSQPLQSPHQQRISWLTQGSV 1255
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
EFQ+V + Y+P LP AL + F +E G ++GIVGRTG+GKSS+ LFRL G++L+
Sbjct: 1256 EFQDVVLVYRPGLPNALDGVTFRVEPGEKLGIVGRTGSGKSSLFLVLFRLLEPNAGRVLL 1315
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
D ++ + +LR + AV+PQ PFLF G++R+NLDP +++D +W LE+CH+ E
Sbjct: 1316 DNVDTSQLELAELRSQLAVIPQEPFLFSGTIRENLDPQGLHEDRALWQALEQCHLSEVAV 1375
Query: 1340 AV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
A+ GL+ + E G + S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I
Sbjct: 1376 AMGGLDGELGERGQNLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICK 1435
Query: 1399 ECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
TV+TIAHR++T+LN D +L+L G +V
Sbjct: 1436 RFANKTVLTIAHRLNTILNSDRVLVLQAGRVV 1467
|
ATP-dependent transporter probably involved in cellular detoxification through lipophilic anion extrusion. Mus musculus (taxid: 10090) |
| >sp|Q63120|MRP2_RAT Canalicular multispecific organic anion transporter 1 OS=Rattus norvegicus GN=Abcc2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 735 bits (1898), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/1216 (36%), Positives = 683/1216 (56%), Gaps = 96/1216 (7%)
Query: 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 340
+LK+++D + F P LL LI F++ + ++ GY+ AI + ++++SF Y H
Sbjct: 323 ILKLIHDLLVFLNPQLLKLLIGFVKSSNSYVWFGYICAILMFAVTLIQSFCLQSYFQHCF 382
Query: 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 400
L + +R+++M+ IY+K L + R +++ GE MSVD+ + ++ N WS
Sbjct: 383 VLGMCVRTTVMSSIYKKALTLSNLARKQYTIGETVNLMSVDSQKLMDATNYMQLVWSSVI 442
Query: 401 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 460
QI ++++ L+ ++ + ++G+ + +LLIPVN +A I N + MK KD+R++ EIL
Sbjct: 443 QITLSIFFLWRELGPSILAGVGVMVLLIPVNGVLATKIRNIQVQNMKNKDKRLKIMNEIL 502
Query: 461 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 520
+ I+ LK + WE F + R E+K+L L + +F TP L S+ TF ++
Sbjct: 503 SGIKILKYFAWEPSFQEQVQGIRKKELKNLLRFGQLQSLLIFILQITPILVSVVTFSVYV 562
Query: 521 LM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 578
L+ + L+A FT + LFN L PL+ P V + ++ A +S+ RL R+LG + L
Sbjct: 563 LVDSANVLNAEKAFTSITLFNILRFPLSMLPMVTSSILQASVSVDRLERYLGGDD----L 618
Query: 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638
+ +A +SNF D AV +A+ +W + + + V+L + G LVAV
Sbjct: 619 DTSA------IRRVSNF---DKAVKFSEASFTW----DPDLEATIQDVNLDIKPGQLVAV 665
Query: 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 698
+G VGSGKSSL++++LGEM HG I GS AYVPQ WI +GTI+DNILFG Y+ +
Sbjct: 666 VGTVGSGKSSLVSAMLGEMENVHGHITIQGSTAYVPQQSWIQNGTIKDNILFGSEYNEKK 725
Query: 699 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 758
Y + LKAC L D+ ++ GGDMA IGEKG+NLSGGQ+ R++LARA Y +DIY+LDD LS
Sbjct: 726 YQQVLKACALLPDLEILPGGDMAEIGEKGINLSGGQKQRVSLARAAYQDADIYILDDPLS 785
Query: 759 AVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
AVDA V + I N ++GP+ L KTRI TH + + D +VV+ KG + GS DL
Sbjct: 786 AVDAHVGKHIF-NKVVGPNGLLAGKTRIFVTHGIHFLPQVDEIVVLGKGTILEKGSYRDL 844
Query: 817 --AVSLYSGFWST-------------------NEFDTSLHMQKQEMRTNASS-------- 847
+++ W T + D L +E+ +A+S
Sbjct: 845 LDKKGVFARNWKTFMKHSGPEGEATVNNDSEAEDDDDGLIPTMEEIPEDAASLAMRRENS 904
Query: 848 -------------------------ANKQILLQ-EKDVVSVSDDAQEIIEVEQRKEGRVE 881
N +L + EK+V + Q++I+ E + G+V+
Sbjct: 905 LRRTLSRSSRSSSRRGKSLKNSLKIKNVNVLKEKEKEV-----EGQKLIKKEFVETGKVK 959
Query: 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTSFYLVV 940
++Y Y + GW+ L I L L + G++LWLS W D+ + T S+S +
Sbjct: 960 FSIYLKYLQAVGWWSILFIILFYGLNNVAFIGSNLWLSAWTSDSDNLNGTNNSSSHRDMR 1019
Query: 941 LCIFC---MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 997
+ +F + L+ + A+ +H LLT I+ AP+ FFD TP GRI+NR
Sbjct: 1020 IGVFGALGLAQGICLLISTLWSIYACRNASKALHGQLLTNILRAPMRFFDTTPTGRIVNR 1079
Query: 998 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057
FS D+ +DD LP L + F G+ G V++ F ++++P +Y +Q FY +
Sbjct: 1080 FSGDISTVDDLLPQTLRSWMMCFFGIAGTLVMICMATPVFAIIIIPLSILYISVQVFYVA 1139
Query: 1058 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1117
TSR+LRRLDSV++SPIY+ F+ET+ G IRAF+ + F+A ++ + + Q+ +S +T+
Sbjct: 1140 TSRQLRRLDSVTKSPIYSHFSETVTGLPIIRAFEHQQRFLAWNEKQIDINQKCVFSWITS 1199
Query: 1118 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1177
+ WL++RL+L+ ++ F + + ++ R L T +VG LS A I L +
Sbjct: 1200 NRWLAIRLELVGNLVV-FCSALLLVIYRKTL-----TGDVVGFVLSNALNITQTLNWLVR 1253
Query: 1178 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYKPSLPAAL 1236
+E E +V++ER+ EY++V E P DWP G I+F N +RY+P L L
Sbjct: 1254 MTSEAETNIVAVERISEYINVENEAPWVTDKRPPADWPRHGEIQFNNYQVRYRPELDLVL 1313
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
I I+ G +VG+VGRTGAGKSS+ N LFR+ GGQI++DG+++ + + DLR R
Sbjct: 1314 KGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIIDGIDVASIGLHDLRERL 1373
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGISF 1354
++PQ P LF GSLR NLDPF+ D ++W LE H++ V +GL + V E G +
Sbjct: 1374 TIIPQDPILFSGSLRMNLDPFNKYSDEEVWRALELAHLRSFVSGLQLGLLSEVTEGGDNL 1433
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1414
S+GQRQL+CL RA+L+ SK+L LDE TA VD +T S++Q I E TVITIAHR+ T
Sbjct: 1434 SIGQRQLLCLGRAVLRKSKILVLDEATAAVDLETDSLIQTTIRKEFSQCTVITIAHRLHT 1493
Query: 1415 VLNMDEILILDHGHLV 1430
+++ D+I++LD+G +V
Sbjct: 1494 IMDSDKIMVLDNGKIV 1509
|
Mediates hepatobiliary excretion of numerous organic anions. Rattus norvegicus (taxid: 10116) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 732 bits (1889), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1226 (35%), Positives = 695/1226 (56%), Gaps = 85/1226 (6%)
Query: 262 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIA 320
PS +RA+ + + ++ + +GF P LL+ LI+F+ + G++LA
Sbjct: 295 QPSFLRALVRTFTSSLLMSACFNLIQNLLGFVNPQLLSILIRFISDPTAPTWWGFLLAGL 354
Query: 321 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 380
+ L+S +++ QY + + L+LR++I+ +IY+K L + + + E + GE+ MSV
Sbjct: 355 MFLSSTMQTLILHQYYHCIFVMALRLRTAIIGVIYRKALVITNSVKRESTVGEMVNLMSV 414
Query: 381 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 440
D R ++++ + WS P Q+ +A+Y L+ + + ++G+A+ +LLIP+N ++ +
Sbjct: 415 DAQRFMDVSPFINLLWSAPLQVILAIYFLWQILGPSALAGVAVIVLLIPLNGAVSMKMKT 474
Query: 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500
K MK KD RI+ EIL I+ LK+Y WE F + R SE++ L YL A
Sbjct: 475 YQVKQMKFKDSRIKLMSEILNGIKVLKLYAWEPSFLEQVKGIRQSELQLLRKGAYLQAIS 534
Query: 501 VFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 558
F W TP L +L T G++ + LDA F L+LFN L PLN P +I+GL A
Sbjct: 535 TFIWICTPFLVTLITLGVYVYVDESNVLDAEKAFVSLSLFNILKIPLNMLPQLISGLTQA 594
Query: 559 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
+S++R+ FL +E + +E+ SP Y A+ + + T +W +
Sbjct: 595 SVSLKRIQDFLNQNELDPQCVERKTISPGY-------------AITIHNGTFTW----AQ 637
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ L+ +++ +PKG+LVAV+G VG GKSSL++++LGEM G + GS+AYVPQ
Sbjct: 638 DLPPTLHSLNIQIPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGVVSVKGSVAYVPQQA 697
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
WI + T+++N+LFG+ +P+ Y + L+ C L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 698 WIQNCTLQENVLFGQPMNPKRYQQALETCALLADLDVLPGGDQTEIGEKGINLSGGQRQR 757
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 795
++LARAVY ++I++LDD LSAVD+ VA+ I + ++GP + KTR+L TH + +
Sbjct: 758 VSLARAVYSDANIFLLDDPLSAVDSHVAKHIF-DQVIGPEGVLAGKTRVLVTHGISFLPQ 816
Query: 796 ADMVVVMDKGQVKWIG--------------------------------SSADLAVSLYSG 823
D ++V+ GQV +G +A+ V L
Sbjct: 817 TDFIIVLAGGQVSEMGHYSALLQHDGSFANFLRNYAPDEDQEDHEAALQNANEEVLLLED 876
Query: 824 FWSTNEFDTS-----LHMQKQEMRTNASSANKQIL------------LQEKDVVSVSDDA 866
ST+ T ++KQ MR +S +++ + L+++ +V+ + +
Sbjct: 877 TLSTHTDLTDNEPAIYEVRKQFMREMSSLSSEGEVQNRTMPKKHTNSLEKEALVTKTKET 936
Query: 867 QEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG 926
+I+ E + G V+L+VY +YAK G TL ICL A+ G ++WLS W +
Sbjct: 937 GALIKEEIAETGNVKLSVYWDYAKSMGLCTTLSICLLYGGQSAAAIGANVWLSAWSNDAE 996
Query: 927 SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFF 986
+ TS L V + L ++ AF+ G+++AA +H LL + +P FF
Sbjct: 997 EHGQQNKTSVRLGVYAALGILQGLLVMLSAFTMVVGAIQAARLLHEALLHNKIRSPQSFF 1056
Query: 987 DQTPGGRILNRFSSDLYMIDDSL-PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1045
D TP GRILNRFS D+Y+ID+ L P IL +L + F + I V+++ +F +++L P
Sbjct: 1057 DTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFFTSISTIMVIVASTPLFMVVVL-PLA 1115
Query: 1046 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVV 1105
+Y +Q FY +TSR+L+RL+S+SRSPI++ F+ET+ G+S IRA+ F V
Sbjct: 1116 VLYGFVQRFYVATSRQLKRLESISRSPIFSHFSETVTGTSVIRAYGRIQDFKVLSDTKVD 1175
Query: 1106 LYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1165
Q++SY + ++ WL + ++ + ++ F A AVIG R +L PGLVGL++SYA
Sbjct: 1176 NNQKSSYPYIASNRWLGVHVEFVGNCVVLFAALFAVIG-RNSL-----NPGLVGLSVSYA 1229
Query: 1166 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS-LSPD-WPFQGLIEFQN 1223
+ L + ++ E ++++ERV EY E +S +P+ WP +G++EF+N
Sbjct: 1230 LQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAPWVVESNRAPEGWPTRGMVEFRN 1289
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283
++RY+P L L ++ ++GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLN
Sbjct: 1290 YSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSSMTLCLFRILEAAEGEIVIDGLN 1349
Query: 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAV 1341
+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1350 VAHIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGRYSEEDIWRALELSHLNTFVSSQPA 1409
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
GL+ E G + SVGQRQL+CLARALL+ S+VL LDE TA +D +T ++Q I ++ +
Sbjct: 1410 GLDFQCAEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFE 1469
Query: 1402 GMTVITIAHRISTVLNMDEILILDHG 1427
TV+TIAHR++T+++ + +L+LD G
Sbjct: 1470 DCTVLTIAHRLNTIMDYNRVLVLDKG 1495
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/1217 (36%), Positives = 676/1217 (55%), Gaps = 98/1217 (8%)
Query: 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL-DGYVLAIALGLTSILKSFFDTQYSFHLS 340
LLK+VND F P LL LI F +L GY+ AI L ++++SF Y
Sbjct: 327 LLKLVNDIFTFVSPQLLKLLISFASDRDTYLWIGYLCAILLFTAALIQSFCLQCYFQLCF 386
Query: 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPF 400
KL +K+R++IM +Y+K L + R E++ GE MSVD + +++ N H WS
Sbjct: 387 KLGVKVRTAIMASVYKKALTLSNLARKEYTVGETVNLMSVDAQKLMDVTNFMHMLWSSVL 446
Query: 401 QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEIL 460
QI ++++ L+ ++ + ++G+ + +L+IP+N ++ K MK KD+R++ EIL
Sbjct: 447 QIVLSIFFLWRELGPSVLAGVGVMVLVIPINAILSTKSKTIQVKNMKNKDKRLKIMNEIL 506
Query: 461 THIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 520
+ I+ LK + WE F + R E+K+L L +F + TP L S+ TF ++
Sbjct: 507 SGIKILKYFAWEPSFRDQVQNLRKKELKNLLAFSQLQCVVIFVFQLTPVLVSVVTFSVYV 566
Query: 521 LMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLG-----CSE 573
L+ LDA FT + LFN L PL+ P +I+ ++ A +S RL ++LG S
Sbjct: 567 LVDSNNILDAQKAFTSITLFNILRFPLSMLPMMISSMLQASVSTERLEKYLGGDDLDTSA 626
Query: 574 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 633
+H+ NF D A+ +A+ +W E + + V+L + G
Sbjct: 627 IRHD---------------CNF---DKAMQFSEASFTW----EHDSEATVRDVNLDIMAG 664
Query: 634 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKN 693
LVAVIG VGSGKSSL++++LGEM HG I G+ AYVPQ WI +GTI+DNILFG
Sbjct: 665 QLVAVIGPVGSGKSSLISAMLGEMENVHGHITIKGTTAYVPQQSWIQNGTIKDNILFGTE 724
Query: 694 YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 753
++ + Y + L+AC L D+ ++ GGD+A IGEKG+NLSGGQ+ R++LARA Y DIY+L
Sbjct: 725 FNEKRYQQVLEACALLPDLEMLPGGDLAEIGEKGINLSGGQKQRISLARATYQNLDIYLL 784
Query: 754 DDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811
DD LSAVDA V + I N ++GP+ L KTR+L TH++ + D +VV+ G + G
Sbjct: 785 DDPLSAVDAHVGKHIF-NKVLGPNGLLKGKTRLLVTHSMHFLPQVDEIVVLGNGTIVEKG 843
Query: 812 S-SADLA---------------------VSLYSGFWSTNEFDTSLHMQKQEMRTNASS-- 847
S SA LA +++ G ++ D L +E+ +A+S
Sbjct: 844 SYSALLAKKGEFAKNLKTFLRHTGPEEEATVHDGSEEEDD-DYGLISSVEEIPEDAASIT 902
Query: 848 ----------------ANKQIL------LQEKDVVSVSDD-----AQEIIEVEQRKEGRV 880
+N + L L+ ++V S+ +D Q++I+ E + G+V
Sbjct: 903 MRRENSFRRTLSRSSRSNGRHLKSLRNSLKTRNVNSLKEDEELVKGQKLIKKEFIETGKV 962
Query: 881 ELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWV-DTTGSSQTKYSTS---F 936
+ ++Y Y + G F I L+ ++ + G++LWLS W D+ + T Y S
Sbjct: 963 KFSIYLEYLQAIGLFSIFFIILAFVMNSVAFIGSNLWLSAWTSDSKIFNSTDYPASQRDM 1022
Query: 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 996
+ V + + F AFG + A+ +H LL I+ AP+ FFD TP GRI+N
Sbjct: 1023 RVGVYGALGLAQGIFVFIAHFWSAFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVN 1082
Query: 997 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYR 1056
RF+ D+ +DD+LP L + F+G++ V++ F ++++P IY +Q FY
Sbjct: 1083 RFAGDISTVDDTLPQSLRSWITCFLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYV 1142
Query: 1057 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116
STSR+LRRLDSV+RSPIY+ F+ET++G IRAF+ + F+ + + Q+ +S +T
Sbjct: 1143 STSRQLRRLDSVTRSPIYSHFSETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWIT 1202
Query: 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1176
++ WL++RL+L+ + F A M VI R L VG LS A I L +
Sbjct: 1203 SNRWLAIRLELVGNLTVFFSALMMVI-YRDTLSG-----DTVGFVLSNALNITQTLNWLV 1256
Query: 1177 SSFTETEKEMVSLERVLEYMDVPQE-ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1235
+E E +V++ER+ EY V E + PDWP +G I+F N +RY+P L
Sbjct: 1257 RMTSEIETNIVAVERITEYTKVENEAPWVTDKRPPPDWPSKGKIQFNNYQVRYRPELDLV 1316
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L I I ++G+VGRTGAGKSS+ N LFR+ GGQI++DG++I + + DLR +
Sbjct: 1317 LRGITCDIGSMEKIGVVGRTGAGKSSLTNCLFRILEAAGGQIIIDGVDIASIGLHDLREK 1376
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA--VGLETFVKESGIS 1353
++PQ P LF GSLR NLDPF+ D +IW LE H+K V + +GL V E+G +
Sbjct: 1377 LTIIPQDPILFSGSLRMNLDPFNNYSDEEIWKALELAHLKSFVASLQLGLSHEVTEAGGN 1436
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S+GQRQL+CL RALL+ SK+L LDE TA VD +T +++Q I +E TVITIAHR+
Sbjct: 1437 LSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIAHRLH 1496
Query: 1414 TVLNMDEILILDHGHLV 1430
T+++ D++++LD+G ++
Sbjct: 1497 TIMDSDKVMVLDNGKII 1513
|
Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1228 (35%), Positives = 678/1228 (55%), Gaps = 86/1228 (7%)
Query: 262 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIA 320
PS ++A+ +G ++ K++ D + F P LL+ LI+F+ + G+++A
Sbjct: 296 KPSFLKALLATFGSSFLISACFKLIQDLLSFINPQLLSILIRFISNPMAPSWWGFLVAGL 355
Query: 321 LGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSV 380
+ L S+++S Y ++ +K R+ IM +IY+K L + + + + GEI MSV
Sbjct: 356 MFLCSMMQSLILQHYYHYIFVTGVKFRTGIMGVIYRKALVITNSVKRASTVGEIVNLMSV 415
Query: 381 DTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 440
D R ++LA + WS P QI +A+Y L+ + + ++G+A +LLIP+N +A +
Sbjct: 416 DAQRFMDLAPFLNLLWSAPLQIILAIYFLWQNLGPSVLAGVAFMVLLIPLNGAVAVKMRA 475
Query: 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500
K MK KD RI+ EIL I+ LK+Y WE F + R E++ L T YL
Sbjct: 476 FQVKQMKLKDSRIKLMSEILNGIKVLKLYAWEPSFLKQVEGIRQGELQLLRTAAYLHTTT 535
Query: 501 VFFWATTPTLFSLFTFGLFALM--GHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDA 558
F W +P L +L T ++ + + LDA F ++LFN L PLN P +I+ L A
Sbjct: 536 TFTWMCSPFLVTLITLWVYVYVDPNNVLDAEKAFVSVSLFNILRLPLNMLPQLISNLTQA 595
Query: 559 FISIRRLTRFLGCSEYKHE-LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
+S++R+ +FL E + +E+ SP Y A+ + T +W +
Sbjct: 596 SVSLKRIQQFLSQEELDPQSVERKTISPGY-------------AITIHSGTFTW----AQ 638
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ L+ + + +PKG+LVAV+G VG GKSSL++++LGEM G +H GS+AYVPQ
Sbjct: 639 DLPPTLHSLDIQVPKGALVAVVGPVGCGKSSLVSALLGEMEKLEGKVHMKGSVAYVPQQA 698
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
WI + T+++N+LFGK +P+ Y +TL+AC L D+ ++ GGD IGEKG+NLSGGQR R
Sbjct: 699 WIQNCTLQENVLFGKALNPKRYQQTLEACALLADLEMLPGGDQTEIGEKGINLSGGQRQR 758
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILCTHNVQAISA 795
++LARAVY +DI++LDD LSAVD+ VA+ I + I GP + KTR+L TH + +
Sbjct: 759 VSLARAVYSDADIFLLDDPLSAVDSHVAKHIFDHVI-GPEGVLAGKTRVLVTHGISFLPQ 817
Query: 796 ADMVVVMDKGQVKWIGS------------------SADLAVSLYSGFWS----------- 826
D ++V+ GQV +G + D W+
Sbjct: 818 TDFIIVLADGQVSEMGPYPALLQRNGSFANFLCNYAPDEDQGHLEDSWTALEGAEDKEAL 877
Query: 827 ------------TNEFDTSLHMQKQEMRT-NASSAN----------KQILLQEKDVVSVS 863
T+ + +QKQ MR +A S++ + + EK V+ +
Sbjct: 878 LIEDTLSNHTDLTDNDPVTYVVQKQFMRQLSALSSDGEGQGRPVPRRHLGPSEKVQVTEA 937
Query: 864 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 923
+ + E+ G VEL+V+ +YAK G TL ICL + A+ G ++WLS W +
Sbjct: 938 KADGALTQEEKAAIGTVELSVFWDYAKAVGLCTTLAICLLYVGQSAAAIGANVWLSAWTN 997
Query: 924 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 983
+ + +TS L V + FL ++ A + A G ++AA +H LL + +P
Sbjct: 998 DAMADSRQNNTSLRLGVYAALGILQGFLVMLAAMAMAAGGIQAARVLHQALLHNKIRSPQ 1057
Query: 984 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043
FFD TP GRILN FS D+Y++D+ L ++ +LL +F + VV+ F ++++P
Sbjct: 1058 SFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNAISTLVVIMASTPLFTVVILP 1117
Query: 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1103
+Y+ +Q FY +TSR+L+RL+SVSRSPIY+ F+ET+ G+S IRA+ F
Sbjct: 1118 LAVLYTLVQRFYAATSRQLKRLESVSRSPIYSHFSETVTGASVIRAYNRSRDFEIISDTK 1177
Query: 1104 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1163
V QR+ Y + ++ WLS+ ++ + ++ F A AVIG R +L PGLVGL++S
Sbjct: 1178 VDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVIG-RSSL-----NPGLVGLSVS 1231
Query: 1164 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEF 1221
Y+ + L + ++ E +V++ERV EY E + P WP +G +EF
Sbjct: 1232 YSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEGSRPPEGWPPRGEVEF 1291
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+N ++RY+P L L D++ + GG +VGIVGRTGAGKSS+ LFR+ G+I +DG
Sbjct: 1292 RNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCLFRILEAAKGEIRIDG 1351
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--E 1339
LN+ + + DLR + ++PQ P LF G+LR NLDPF + IW LE H+ V +
Sbjct: 1352 LNVADIGLHDLRSQLTIIPQDPILFSGTLRMNLDPFGSYSEEDIWWALELSHLHTFVSSQ 1411
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
GL+ E G + SVGQRQL+CLARALL+ S++L LDE TA +D +T +++Q I ++
Sbjct: 1412 PAGLDFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQ 1471
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHG 1427
TV+TIAHR++T+++ +L+LD G
Sbjct: 1472 FDTCTVLTIAHRLNTIMDYTRVLVLDKG 1499
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Homo sapiens (taxid: 9606) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/1215 (35%), Positives = 678/1215 (55%), Gaps = 70/1215 (5%)
Query: 262 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 319
PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY
Sbjct: 311 EPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPKILELIINFVNDREAPDWQGYFYTA 369
Query: 320 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 378
L +++ L++ QY FH+ + ++++++++ +Y+K L + A R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVSGMRIKTAVVGAVYRKALLITNAARKSSTVGEIVNLM 428
Query: 379 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 438
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P+N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVILALYFLWLSLGPSVLAGVAVMILMVPLNAVMAMKT 488
Query: 439 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 498
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMSIRQEELKVLKKSAYLAA 548
Query: 499 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 556
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDERNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 557 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 616
A +S++RL FL ELE + I +G N ++ +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERRSIKSGEGN------SITVKNATFTW----A 654
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 655 RGEPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 714
Query: 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736
WI + ++R+NILFG Y ++AC L D+ ++ GD IGEKGVNLSGGQ+
Sbjct: 715 AWIQNDSLRENILFGHPLQENYYKAVMEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 774
Query: 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 794
R++LARAVY SDIY+ DD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 775 RVSLARAVYSNSDIYLFDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 833
Query: 795 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD------------------ 831
D+++VM G++ +GS +L A + + ++ E D
Sbjct: 834 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFLRTYANAEQDLASEDDSVSGSGKESKPV 893
Query: 832 ---------TSLHMQKQEMRTNASSAN---KQILLQEKDVVSVSDDAQEIIEVEQRKEGR 879
H+Q+ +++ S + + + E ++ +++E ++ + G+
Sbjct: 894 ENGMLVTDTVGKHLQRHLSNSSSHSGDTSQQHSSIAELQKAGAKEETWKLMEADKAQTGQ 953
Query: 880 VELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYL 938
V+L+VY NY K G FIT + + S ++ WLS W D + T+ + +F L
Sbjct: 954 VQLSVYWNYMKAIGLFITFLSIFLFLCNHVSALASNYWLSLWTDDPPVVNGTQANRNFRL 1013
Query: 939 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 998
V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++NRF
Sbjct: 1014 SVYGALGILQGAAIFGYSMAVSIGGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRF 1073
Query: 999 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058
S +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY ++
Sbjct: 1074 SKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFYVAS 1133
Query: 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118
SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A+
Sbjct: 1134 SRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1193
Query: 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L +
Sbjct: 1194 RWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWLVRM 1247
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAAL 1236
+E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L L
Sbjct: 1248 SSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVL 1307
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR +
Sbjct: 1308 KHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKI 1367
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1354
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G +
Sbjct: 1368 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1427
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1414
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++T
Sbjct: 1428 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1487
Query: 1415 VLNMDEILILDHGHL 1429
+++ +++LD G +
Sbjct: 1488 IMDYTRVIVLDKGEV 1502
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|Q5F364|MRP1_CHICK Multidrug resistance-associated protein 1 OS=Gallus gallus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1231 (35%), Positives = 674/1231 (54%), Gaps = 88/1231 (7%)
Query: 254 AQRSCNCTNPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQQGSG-H 311
+QRS + SL + + +G PY + L K +D + F GP +L LI F+ S +
Sbjct: 304 SQRS---SEASLSKVLYKTFG-PYFLMSFLFKAAHDLLMFTGPEILKLLINFVNNKSAPN 359
Query: 312 LDGYVLAIALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFS 370
GY L + + L++ QY FH+ + ++L+++I+ +IY+K L + + R +
Sbjct: 360 WQGYFYTGLLFVCACLQTLILHQY-FHICFVTGMRLKTAIVGVIYRKALVITNSARKTST 418
Query: 371 DGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPV 430
GEI MSVD R ++LA + WS P Q+ +ALYLL+ + + ++G+A+ ILL+P+
Sbjct: 419 VGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYLLWRNLGPSVLAGVAVMILLVPI 478
Query: 431 NKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHL 490
N +A MK KD RI+ EIL I+ LK+Y WE F +++ R E+K L
Sbjct: 479 NAVMAMKTKTYQVAQMKSKDNRIKLMNEILNGIKVLKLYAWELAFREKVLEIRQKELKVL 538
Query: 491 STRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSF 548
YL A F W P L +L TF ++ + LDA F LALFN L PLN
Sbjct: 539 KKSAYLAAMGTFTWVCAPFLVALSTFAVYVKVNKNNILDAQKAFVSLALFNILRFPLNIL 598
Query: 549 PWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDAT 608
P VI+ +++A +S++RL FL E + S I ++N + ++++++AT
Sbjct: 599 PMVISSIVEASVSLKRLRVFLSHEELDPD--------SIIRGPITN---AEGSIVVKNAT 647
Query: 609 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 668
SW + LN ++ +P+GSL+AV+G+VG GKSSLL+++LGEM G + G
Sbjct: 648 FSWSKTDPPS----LNSINFTVPEGSLIAVVGQVGCGKSSLLSALLGEMDKKEGYVVVKG 703
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
SIAYVPQ WI + T+ DNI+FG+ + Y ++AC L D+ ++ GD IGEKGV
Sbjct: 704 SIAYVPQQAWIQNATLEDNIIFGREMNESRYKRVIEACALLPDLEILPMGDRTEIGEKGV 763
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH--MLQKTRILC 786
NLSGGQ+ R++LARAVY +D Y+ DD LSAVDA V + I I GP + KTR+L
Sbjct: 764 NLSGGQKQRVSLARAVYCNADTYLFDDPLSAVDAHVGKHIFEKVI-GPKGILKNKTRVLV 822
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL------------------------------ 816
TH V + D ++VM G++ +GS +L
Sbjct: 823 THAVNYLPQMDTILVMTDGEISEMGSYQELLKQDGAFAEFLRTYANAEQSMESSDASSPS 882
Query: 817 ---AVSLYSGFWSTNEFDTSLHMQKQEMRT----------NASSANKQILLQEKDVVSVS 863
+ +G + +H Q T +S+A Q L EK+
Sbjct: 883 GKEGKPVENGVLVNDATGKLMHRQLSNSSTYSRETGKSQHQSSTAELQKPLAEKN----- 937
Query: 864 DDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVD 923
+ ++ E + K GRV+ TVY Y K G +I+ + + + ++ WLS W D
Sbjct: 938 --SWKLTEADTAKTGRVKATVYWEYMKAIGLYISFLSVFLFMCNHIASLASNYWLSLWTD 995
Query: 924 TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 983
+ T+ T+ L V + + + + G + A+ +H LL ++ +P+
Sbjct: 996 DPVVNGTQQYTNVRLGVYGALGISQGIAVFGYSMAVSIGGIFASRHLHLDLLHNVLRSPM 1055
Query: 984 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043
FF++TP G +++RFS ++ ID ++P I+ + + + ++G +++ +++ P
Sbjct: 1056 SFFERTPSGNLVSRFSKEIDTIDSTIPPIIKMFMGSTFNVIGACIIILLATPIAAVVIPP 1115
Query: 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEH 1103
+Y +Q FY +TSR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ + F+ +
Sbjct: 1116 LGLVYLLVQRFYVATSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQKRFIKQNDMK 1175
Query: 1104 VVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALS 1163
V Q+ Y + A+ WL++RL+ + I+ F A AVI +R L +PGL+GL++S
Sbjct: 1176 VDENQKAYYPSIVANRWLAVRLEFVGNCIVLFAALFAVI-ARNKL-----SPGLIGLSVS 1229
Query: 1164 YAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEF 1221
Y+ I + L + ++ E +V++ERV EY ++ +E + +P WP +G +EF
Sbjct: 1230 YSLQITAYLNWLVRMTSDLETNIVAVERVKEYAEMEKEAEWSIEETAPASTWPQEGKVEF 1289
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+ +RY+ L L +IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DG
Sbjct: 1290 RGFGLRYREDLDLVLKNINITINGGEKVGIVGRTGAGKSSLTLGLFRINEAAEGEIIIDG 1349
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV 1341
+NI + DLR + ++PQ P LF GSLR NLDPF + D IW LE H+K V ++
Sbjct: 1350 INIAKIGLHDLRFKITIIPQDPILFSGSLRMNLDPFDQHSDEDIWRSLELAHLKNFVSSL 1409
Query: 1342 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
L E G + SVGQRQL+CLARALL+ SK+L LDE TA VD +T +++Q+ I S+
Sbjct: 1410 PDKLNHECSEGGENLSVGQRQLVCLARALLRKSKILVLDEATAAVDLETDNLIQSTIKSQ 1469
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ TV+TIAHR++T+++ +L+LD G +V
Sbjct: 1470 FEECTVLTIAHRLNTIMDYTRVLVLDRGEVV 1500
|
Mediates ATP-dependent export of organic anions and drugs from the cytoplasm. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Gallus gallus (taxid: 9031) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/1218 (35%), Positives = 685/1218 (56%), Gaps = 72/1218 (5%)
Query: 262 NPSLVRAICCAYGYPYICLGLL-KVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAI 319
+PSL + + +G PY + L K ++D + FAGP +L +I F+ + + GY+
Sbjct: 311 DPSLFKVLYKTFG-PYFLMSFLYKALHDLMMFAGPEILELIINFVNDREAPDWQGYLYTA 369
Query: 320 ALGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFM 378
L +++ L++ QY FH+ + ++++++++ +Y+K L + + R + GEI M
Sbjct: 370 LLFVSACLQTLALHQY-FHICFVTGMRIKTAVVGAVYRKALVITNSARKSSTVGEIVNLM 428
Query: 379 SVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLI 438
SVD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ IL++P N +A
Sbjct: 429 SVDAQRFMDLATYINMIWSAPLQVTLALYFLWLNLGPSVLAGVAVMILMVPFNAVMAMKT 488
Query: 439 ANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDA 498
MK KD RI+ EIL I+ LK+Y WE F +M R E+K L YL A
Sbjct: 489 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFQDKVMNIRQEELKVLKKSAYLAA 548
Query: 499 WCVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLI 556
F W TP L +L TF +F + + LDA F LALFN L PLN P VI+ ++
Sbjct: 549 VGTFTWVCTPFLVALSTFAVFVTVDEKNILDAKKAFVSLALFNILRFPLNILPMVISSIV 608
Query: 557 DAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNE 616
A +S++RL FL ELE + I +G NS + +++AT +W
Sbjct: 609 QASVSLKRLRIFLS----HEELEPDSIERWSIKDG-GGMNS----ITVKNATFTW----A 655
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676
++ LN ++ +P G+LVAV+G+VG GKSSLL+++L EM G + GS+AYVPQ
Sbjct: 656 RDEPPTLNGITFAIPDGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVTLKGSVAYVPQQ 715
Query: 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736
WI + ++R+NILFG+ Y ++AC L D+ ++ GD+ IGEKGVNLSGGQ+
Sbjct: 716 AWIQNDSLRENILFGRPLQEHCYKAVMEACALLPDLEILPSGDLTEIGEKGVNLSGGQKQ 775
Query: 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS 794
R++LARAVY SDIY+LDD LSAVDA V + I ++GP L KTRIL TH + +
Sbjct: 776 RVSLARAVYCNSDIYLLDDPLSAVDAHVGKHIFEK-VVGPMGLLKNKTRILVTHGISYLP 834
Query: 795 AADMVVVMDKGQVKWIGSSADL-----AVSLYSGFWSTNEFD----------------TS 833
D+++VM G++ +GS +L A + + ++ E D S
Sbjct: 835 QVDVIIVMSGGKISEMGSYQELLDRDGAFAEFVRTYANTEQDLASEDDSKNGVSGLGKES 894
Query: 834 LHMQKQEMRTNA-----------SSANKQILLQEKDVVS------VSDDAQEIIEVEQRK 876
++ + T+A SS++ + Q+ + V ++ +++E ++ +
Sbjct: 895 KPVENGILVTDAVGKPLQRHLSNSSSHSVVTNQQHSSTAELQKSGVKEETWKLMEADKAQ 954
Query: 877 EGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTS 935
G+V+L+VY NY K G I+ + + S ++ WLS W D + + T+ + +
Sbjct: 955 TGQVKLSVYWNYMKAIGLCISFLSIFLFLCNHVSALASNYWLSLWTDDRPAVNGTQENRN 1014
Query: 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
F L V + + + + G + A+ ++H LL ++ +P+ FF++TP G ++
Sbjct: 1015 FRLSVYGALGILQGVAVFGYSMAVSIGGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLV 1074
Query: 996 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1055
NRFS +L +D +P ++ + + + ++G +++ +++ P +Y +Q FY
Sbjct: 1075 NRFSKELDTVDSMIPQVIKMFMGSLFSVIGAVIIILLATPIAAVIIPPLGLVYFFVQRFY 1134
Query: 1056 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1115
++SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y +
Sbjct: 1135 VASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSI 1194
Query: 1116 TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1175
A+ WL++RL+ + I+ F A AVI SR +L A GLVGL++SY+ I + L
Sbjct: 1195 VANRWLAVRLECVGNCIVLFAALFAVI-SRHSLSA-----GLVGLSVSYSLQITAYLNWL 1248
Query: 1176 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLP 1233
+ +E E +V++ER+ EY + +E Q +P WP G +EF++ +RY+ L
Sbjct: 1249 VRMSSEMETNIVAVERLKEYSETEKEASWQIQETAPPSTWPHSGRVEFRDYCLRYREDLD 1308
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
L IN TIEGG +VGIVGRTGAGKSS+ LFR+ G+I++DG+NI + +LR
Sbjct: 1309 LVLKHINVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLR 1368
Query: 1294 GRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1351
+ ++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L E G
Sbjct: 1369 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGG 1428
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
+ SVGQRQL+CLARALL+ +K+L LDE TA VD +T ++Q+ I ++ + TV+TIAHR
Sbjct: 1429 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTVLTIAHR 1488
Query: 1412 ISTVLNMDEILILDHGHL 1429
++T+++ +++LD G +
Sbjct: 1489 LNTIMDYTRVIVLDKGEI 1506
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1446 | ||||||
| 358346459 | 1539 | ABC transporter C family member [Medicag | 0.984 | 0.924 | 0.666 | 0.0 | |
| 255543321 | 1395 | multidrug resistance-associated protein, | 0.883 | 0.916 | 0.761 | 0.0 | |
| 356547472 | 1384 | PREDICTED: ABC transporter C family memb | 0.932 | 0.973 | 0.702 | 0.0 | |
| 225443168 | 1305 | PREDICTED: ABC transporter C family memb | 0.860 | 0.953 | 0.770 | 0.0 | |
| 156556172 | 1457 | Multidrug Resistance associated Protein | 0.983 | 0.975 | 0.674 | 0.0 | |
| 334184186 | 1404 | multidrug resistance-associated protein | 0.939 | 0.967 | 0.651 | 0.0 | |
| 298286923 | 1410 | RecName: Full=ABC transporter C family m | 0.940 | 0.964 | 0.648 | 0.0 | |
| 297831764 | 1193 | ATMRP11 [Arabidopsis lyrata subsp. lyrat | 0.807 | 0.979 | 0.700 | 0.0 | |
| 298204674 | 1205 | unnamed protein product [Vitis vinifera] | 0.725 | 0.870 | 0.746 | 0.0 | |
| 5001458 | 1146 | putative ABC transporter [Arabidopsis th | 0.742 | 0.936 | 0.706 | 0.0 |
| >gi|358346459|ref|XP_003637285.1| ABC transporter C family member [Medicago truncatula] gi|355503220|gb|AES84423.1| ABC transporter C family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 2006 bits (5197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1003/1504 (66%), Positives = 1186/1504 (78%), Gaps = 81/1504 (5%)
Query: 4 ICPNSPFVWDG--STFSKCFDDMIL----DFATNMVTIFIILIIGITQR-----SPRQNQ 52
ICPNSP V + ++L FA N+VTI +IL++GI Q+ + R +
Sbjct: 13 ICPNSPSVPFKIIKVLYEFHISLVLVYFTGFAVNVVTIAMILVLGIKQKISGRGTQRSDA 72
Query: 53 RINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLS 112
+++L+EK L+ +P +GAC S ++++ LLK++ G FV YH WL SCSE VW I+L +
Sbjct: 73 QMSLLEKFVLYFVPAIGACCSVLEIMFLLKKEHDGHFVGYHRWLHSCSELLVWANIILFT 132
Query: 113 RCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINI 172
+CA HC+ +R+LCFWWI+ P++GI H + F S EV C+ E +VL+++ FG+ IN+
Sbjct: 133 KCASIHCIVFNRVLCFWWILNPILGIFHLITNFPSLEVSACIMESLVVLMNLSFGVVINV 192
Query: 173 IRVKRASSRRSSIEESLLSVDGDVEEDCNTD----SSYWDLMAFKSIDSVMNRGVIKQLD 228
IR+KR SS+ S +E+ LLS GD+EE N D ++WD M FK I VMN+GV+KQLD
Sbjct: 193 IRLKRLSSKSSLLEDPLLSNGGDLEEGGNHDLENNCNFWDFMTFKFISPVMNQGVLKQLD 252
Query: 229 FEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVND 288
+DLL L DM PS CH +L+ W+AQ S N NPSL A+C AYG+PY+CLGLLKV+ND
Sbjct: 253 SDDLLPLLPDMGPSFCHDIILNSWRAQVSNNSLNPSLFSALCNAYGWPYLCLGLLKVIND 312
Query: 289 SIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348
IGFAGPLLLNKLIKFLQQGS DGY+LA++LGLTSI+KSF DTQY+F LSKLKLKLRS
Sbjct: 313 GIGFAGPLLLNKLIKFLQQGSASWDGYLLALSLGLTSIIKSFLDTQYTFRLSKLKLKLRS 372
Query: 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL 408
SIMT+IY+KCLYV LAERS+F++GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYL
Sbjct: 373 SIMTLIYEKCLYVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYL 432
Query: 409 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKM 468
LYTQVKFAFVSGLAI ILLIPVNKWI+ LIA ATE+MMK+KDERIRRTGE+LT+IRTLKM
Sbjct: 433 LYTQVKFAFVSGLAIAILLIPVNKWISTLIARATEQMMKEKDERIRRTGELLTYIRTLKM 492
Query: 469 YGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDA 528
YGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP+LFSL TFGLFALMGHQLDA
Sbjct: 493 YGWELLFSSWLMATRSLEVKHLATRKYLDAWCVFFWATTPSLFSLSTFGLFALMGHQLDA 552
Query: 529 AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 588
A VFTC+ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL C E++ E+ + NS
Sbjct: 553 ATVFTCIALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHRREVGE--NSSCSS 610
Query: 589 SNGLSNFNS-KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647
S +S +D+AV +QDA CSW +EE +N+VLN V+L L KGS VAVIGEVGSGKS
Sbjct: 611 SFLSKQPDSLQDLAVFIQDACCSWSSGDEEAKNLVLNHVTLSLSKGSFVAVIGEVGSGKS 670
Query: 648 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 707
SL+ SILGEM L HGSI++ GS+AYVPQVPW++SGT+RDNILFGK+Y+P+ Y++T+ AC
Sbjct: 671 SLIYSILGEMRLDHGSIYSHGSVAYVPQVPWVISGTVRDNILFGKSYNPERYADTINACA 730
Query: 708 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767
LDVDIS MVGGDMAYIGEKGVNLSGGQRARLALAR +YH SD+ MLDD+LSAVD QVA+W
Sbjct: 731 LDVDISSMVGGDMAYIGEKGVNLSGGQRARLALARVLYHDSDVIMLDDILSAVDVQVAQW 790
Query: 768 ILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 827
IL NAI+GP + KTR+LCTHN+QAIS+ADM +V+DKG VKW+G S+D SLY+ F
Sbjct: 791 ILHNAILGPLLKGKTRLLCTHNIQAISSADMTIVLDKGCVKWMGISSDFPTSLYTEFSPL 850
Query: 828 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 887
NE D++ H +Q N+S + +Q L ++ V+ + +++IEVE RKEG+VEL VYKN
Sbjct: 851 NEMDSTPHNHQQSCSINSSISEEQS-LPDRIVMDTLEGEEDVIEVELRKEGKVELGVYKN 909
Query: 888 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCM 946
YA F+GWFI ++ICLSA+LMQASRN NDLWLSYWVDTT QT YS SFYL +LC+FC+
Sbjct: 910 YAAFTGWFIAVIICLSALLMQASRNANDLWLSYWVDTTTEDGQTSYSMSFYLAILCLFCI 969
Query: 947 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN-------RFS 999
NS TLVRAFSFAFG L+AA KVHN LL+K++NAPV FFDQTPGGRILN R S
Sbjct: 970 MNSIFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLEYDVFRLS 1029
Query: 1000 SDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQ------------------VFFLLLL 1041
SDLY IDDSLPFILNILLANFVGLLGIA++LSYVQ VFFL+LL
Sbjct: 1030 SDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVFMIFLSFFFLCTAILKFVFFLVLL 1089
Query: 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFK 1101
+PFW+IYS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFKSED+F +KF
Sbjct: 1090 LPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFSKFT 1149
Query: 1102 EHVVLYQRTSYSELTASLWLSLRL-----------------------------------Q 1126
+H+ LYQ+TSY+E+ ASLWLSLRL Q
Sbjct: 1150 DHITLYQKTSYTEIVASLWLSLRLQVSLHFAKLVVRYYIRFELTKYGISTVLLLIMTFFQ 1209
Query: 1127 LLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEM 1186
LLAAFIISFIA MAV GS G+LP F TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEM
Sbjct: 1210 LLAAFIISFIALMAVAGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEM 1269
Query: 1187 VSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGG 1246
VS+ER L+YMD+PQEE G Q L+PDWP QG+IEFQ+VT++Y PSLPAAL +I+F IEGG
Sbjct: 1270 VSIERALQYMDIPQEEQAGCQYLNPDWPNQGVIEFQHVTLKYMPSLPAALCNISFKIEGG 1329
Query: 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1306
TQVGI+GRTGAGKSS+L ALFRLTPIC G I VDG++I N PVR+LR A+VPQSPFLF
Sbjct: 1330 TQVGIIGRTGAGKSSVLTALFRLTPICAGSITVDGMDIQNIPVRELRTHLAIVPQSPFLF 1389
Query: 1307 EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLA 1365
EGSLRDNLDPF NDD KIW LEKCHVKEEVEA GL VKE G+SFSVGQRQL+CLA
Sbjct: 1390 EGSLRDNLDPFKTNDDSKIWDALEKCHVKEEVEAAGGLNVLVKEGGMSFSVGQRQLLCLA 1449
Query: 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1425
RALLKSSKVLCLDECTA+VD QTAS+LQ+ ISSECKGMTVITIAHRISTV+N+D ILILD
Sbjct: 1450 RALLKSSKVLCLDECTASVDIQTASLLQSTISSECKGMTVITIAHRISTVINLDNILILD 1509
Query: 1426 HGHL 1429
HG+L
Sbjct: 1510 HGNL 1513
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543321|ref|XP_002512723.1| multidrug resistance-associated protein, putative [Ricinus communis] gi|223547734|gb|EEF49226.1| multidrug resistance-associated protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1991 bits (5159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 980/1287 (76%), Positives = 1117/1287 (86%), Gaps = 9/1287 (0%)
Query: 149 EVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEEDCNTDS---- 204
+VL+CLKE ++LLD++F ISINIIR++ AS + SSIE+ LLS D D+E+ DS
Sbjct: 88 QVLECLKESSVILLDVLFSISINIIRIRAASPKNSSIEDPLLSADIDIEQAYPVDSGNIQ 147
Query: 205 SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPS 264
S W+LM FKSI VM RG+IKQLDFEDLLGLP DM+P +CH +L CWQAQ++ +NP
Sbjct: 148 SCWNLMTFKSITPVMKRGIIKQLDFEDLLGLPDDMEPLSCHDRLSCCWQAQQTS--SNPL 205
Query: 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLT 324
L++AICCAYG+PY +GLLKV ND IGFAGPLLLNKLI+FLQ+GS H DGY+LA++LGLT
Sbjct: 206 LLKAICCAYGWPYFRIGLLKVFNDCIGFAGPLLLNKLIRFLQRGSAHWDGYLLALSLGLT 265
Query: 325 SILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDR 384
S+LKSF DTQYSFHL+KLKLKLR+SIMT+IYQKCL V LAERS+FS+GEIQTFMSVD DR
Sbjct: 266 SVLKSFLDTQYSFHLAKLKLKLRASIMTVIYQKCLCVTLAERSKFSEGEIQTFMSVDADR 325
Query: 385 TVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEK 444
TVNL NSFHD WSLP QIGVALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEK
Sbjct: 326 TVNLCNSFHDVWSLPLQIGVALYLLYTQVKFAFLSGLAITILLIPVNKWISELIASATEK 385
Query: 445 MMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504
MMKQKDERIR+TGEILT+IRTLKMYGWE +FSS LM+TRS+EVKHL+TRKYLDAWCVFFW
Sbjct: 386 MMKQKDERIRKTGEILTYIRTLKMYGWEHLFSSRLMETRSTEVKHLATRKYLDAWCVFFW 445
Query: 505 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 564
ATTPTLFSLFTFGLF LMGHQL+AA VFTCLALFN+LISPLNSFPWVINGLIDAFIS RR
Sbjct: 446 ATTPTLFSLFTFGLFTLMGHQLEAATVFTCLALFNNLISPLNSFPWVINGLIDAFISTRR 505
Query: 565 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 624
L++FLGC E KH+LEQ S S N SNF S DMAV+M D C+W +E++QN+VLN
Sbjct: 506 LSKFLGCPENKHKLEQRTESLS--PNYQSNFVSDDMAVMMHDVCCAWSSGDEQQQNLVLN 563
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTI 684
V++ LPKGS +A++GEVGSGKSSLL +ILGEM GS+H+SGS AYVPQVPWILSGT+
Sbjct: 564 NVTVTLPKGSFIAIVGEVGSGKSSLLGAILGEMRFIRGSVHSSGSRAYVPQVPWILSGTV 623
Query: 685 RDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744
R+NILFGKNYD + Y +T+KAC LDVDIS+M GGDMAYIGEKGVNLSGGQRAR+ALARA+
Sbjct: 624 RENILFGKNYDSERYLDTIKACALDVDISMMAGGDMAYIGEKGVNLSGGQRARIALARAI 683
Query: 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804
Y GSD+YMLDDVLSAVDA+VAR IL NAI+GP + QKTR+LCTHNVQAIS+AD +VVM++
Sbjct: 684 YQGSDVYMLDDVLSAVDAEVARCILQNAILGPLLDQKTRVLCTHNVQAISSADRIVVMER 743
Query: 805 GQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD 864
G VKW+G+S DLAVS YS F NEFDT ++Q Q +R N S+ + + +K+ + VS+
Sbjct: 744 GHVKWVGNSTDLAVSSYSAFSLQNEFDTLSYVQGQGLRINTSTESIKSPSVDKESICVSE 803
Query: 865 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 924
+AQEI EVE RK GRVEL VYKNY FSG FI +VI LSAILMQASRNGNDLWLSYWVDT
Sbjct: 804 EAQEIFEVELRKAGRVELAVYKNYVAFSGCFIIVVIGLSAILMQASRNGNDLWLSYWVDT 863
Query: 925 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984
TGSS +STSFYL VLCIFC+ NS LTLVRAFSFAFG LRAA++VHNTLL K+++AP+
Sbjct: 864 TGSSHGGFSTSFYLAVLCIFCIVNSSLTLVRAFSFAFGGLRAAIQVHNTLLKKLIDAPIQ 923
Query: 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGIA++LSYVQV FLLLL+PF
Sbjct: 924 FFDQTPAGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIAIILSYVQVAFLLLLLPF 983
Query: 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1104
WFIYSKLQFFYRSTSRELRRLDSVSRSPIYA+FTETL+G+STIRAFKSED F+AKF EHV
Sbjct: 984 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYATFTETLDGTSTIRAFKSEDCFLAKFTEHV 1043
Query: 1105 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1164
LYQRTSYSE ASLWLSLRLQL+AAFIISF+A MAV+GSRG LP + TPGLVGLALSY
Sbjct: 1044 GLYQRTSYSETIASLWLSLRLQLIAAFIISFVAVMAVVGSRGYLPISSGTPGLVGLALSY 1103
Query: 1165 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1224
AAPIVSLLG+FL+SFTETEKEMVS+ER L+YMD+ QEEL G QSL PDWPFQGLIEFQNV
Sbjct: 1104 AAPIVSLLGSFLTSFTETEKEMVSVERALQYMDISQEELEGSQSLGPDWPFQGLIEFQNV 1163
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
TMRYKPSLP AL + FT+ GGTQVGIVGRTGAGKSSILNALFRL+PI GG ILVDGLNI
Sbjct: 1164 TMRYKPSLPPALDGVTFTVAGGTQVGIVGRTGAGKSSILNALFRLSPISGGCILVDGLNI 1223
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGL 1343
I+ PVRDLR F+VVPQ+PFLFEGSLRDNLDP + DLKIWS LE+CH+KEEVE A GL
Sbjct: 1224 IDVPVRDLRAHFSVVPQTPFLFEGSLRDNLDPLQTSSDLKIWSTLEQCHIKEEVEMAGGL 1283
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
+ VK SG SFSVGQRQL+CLARALLKSS+VLCLDECTANVD QTASILQNAIS+EC+GM
Sbjct: 1284 DALVKGSGSSFSVGQRQLLCLARALLKSSRVLCLDECTANVDTQTASILQNAISTECEGM 1343
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLV 1430
TVITIAHRISTV+NMD IL+LD G+++
Sbjct: 1344 TVITIAHRISTVMNMDHILVLDRGNVI 1370
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547472|ref|XP_003542136.1| PREDICTED: ABC transporter C family member 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1972 bits (5109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 985/1403 (70%), Positives = 1152/1403 (82%), Gaps = 55/1403 (3%)
Query: 37 IILIIGITQRSPR----QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFVSY 92
+I+++G Q+ R + ++ L EK L+++P VGACLS VD+I L K+ + FV Y
Sbjct: 1 MIVVLGFNQKIGRGFRLSDSQMTLPEKFVLNLIPAVGACLSIVDLIFLWKKDHNSHFVGY 60
Query: 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLK 152
H+W +SCSE +W +
Sbjct: 61 HKWFNSCSELILWVSV-------------------------------------------- 76
Query: 153 CLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVEE----DCNTDSSYWD 208
C+ E +VLL+I F I+IN+IR+K S + S +E+ LLS D+EE D + ++WD
Sbjct: 77 CIMESLVVLLNISFSIAINVIRIKIPSFKSSLLEDPLLSNGVDLEEGGYNDLGNNGNFWD 136
Query: 209 LMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRA 268
LM FK I VMN GVIKQLD EDLL LPTD+ PS+CH +LSCWQAQ S N +NPSL RA
Sbjct: 137 LMTFKFITPVMNHGVIKQLDPEDLLPLPTDIGPSSCHDVILSCWQAQLSNNDSNPSLFRA 196
Query: 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILK 328
+C AYG+PY+CLGLLKV+ND IGFAGPLLLNKLI+FLQQGS +LDGY+LA++LGLTSI+K
Sbjct: 197 LCSAYGWPYLCLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIK 256
Query: 329 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNL 388
SF DTQY+FHLSKLKLKLRSSIMT+IY+KCL V LAERS+F++GEIQTFMSVD DRTVNL
Sbjct: 257 SFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLRVNLAERSKFTNGEIQTFMSVDADRTVNL 316
Query: 389 ANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 448
NSFHD WSLP QIGVALYLLYTQVKFAFVSGLAITILLIPVNKWI+ LIA ATE+MMK+
Sbjct: 317 CNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISQLIARATEQMMKE 376
Query: 449 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 508
KDERIRRTGE+LT+IRTLKMYGWE +FSSWLM TRS EVKHL+TRKYLDAWCVFFWATTP
Sbjct: 377 KDERIRRTGELLTYIRTLKMYGWELLFSSWLMDTRSLEVKHLATRKYLDAWCVFFWATTP 436
Query: 509 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRF 568
TLFSLFTFGLFALMGH+LDAAMVFTCLALFN+LISPLNSFPWVINGLIDA IS RRL+RF
Sbjct: 437 TLFSLFTFGLFALMGHELDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRF 496
Query: 569 LGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSL 628
L C E K ++ +SPS + + + + + V +QDA C+W + E+ N+VLN V+L
Sbjct: 497 LSCPERKFKVGDTNSSPSSFLSKQPD-SVQGLGVFIQDACCTWSSSEEQALNLVLNHVTL 555
Query: 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNI 688
+ +GS VAVIGEVGSGKSSLL SILGEM L GS++++ SIAYVPQVPWILSGT+RDNI
Sbjct: 556 SVSQGSFVAVIGEVGSGKSSLLYSILGEMQLARGSVYSNESIAYVPQVPWILSGTVRDNI 615
Query: 689 LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748
LFGK+YDP+ Y++TL+AC LDVD+S+MV GDMAYIGEKGVNLSGGQRARLALARA+YH S
Sbjct: 616 LFGKSYDPERYTDTLQACALDVDVSMMVRGDMAYIGEKGVNLSGGQRARLALARAMYHDS 675
Query: 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
D+ MLDDVLSAVD QVA+ IL NAI+GP M +KTR+LCTHN+QAIS+ADM+VVMDKG++K
Sbjct: 676 DVVMLDDVLSAVDVQVAQRILHNAILGPLMQRKTRLLCTHNIQAISSADMIVVMDKGRIK 735
Query: 809 WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQE 868
W+G+SAD +S Y+ F NE D++LH +Q TN SS +K+ L D+V V + A+E
Sbjct: 736 WMGNSADFPISSYTEFSPLNEIDSALHNHRQSCSTNLSSKSKEQSLPNSDIVHVLEGAEE 795
Query: 869 IIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG-S 927
I+EVE RKEG+VEL VYK+YA F+GWF+T++ICLSAILMQASRNGNDLWLS+WVDTT S
Sbjct: 796 IVEVELRKEGKVELGVYKSYAVFTGWFMTVIICLSAILMQASRNGNDLWLSFWVDTTTES 855
Query: 928 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 987
SQT+YS SFYL +LC+FC+ NS TLVRAFSFAFG L+AA KVHN LL K+VNAPV FFD
Sbjct: 856 SQTRYSVSFYLAILCLFCIMNSLFTLVRAFSFAFGGLQAATKVHNKLLNKLVNAPVQFFD 915
Query: 988 QTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1047
QTPGGRILNR SSDLY IDDSLPFI+NILLANFVGLLGI ++L YVQVFFLLLL+PFW+I
Sbjct: 916 QTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGITIILCYVQVFFLLLLLPFWYI 975
Query: 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1107
YS+LQFFYRSTSRELRRLDSVSRSPIY SFTETL+GSSTIRAFK+ED+F AKF EH+ LY
Sbjct: 976 YSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKAEDFFFAKFIEHITLY 1035
Query: 1108 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAP 1167
Q+TSY+E+ ASLWLSLRLQLL AFI+SFIA MAV+GS G+LP F TPGLVGLALSYAAP
Sbjct: 1036 QKTSYTEIVASLWLSLRLQLLGAFIVSFIAVMAVVGSHGSLPINFGTPGLVGLALSYAAP 1095
Query: 1168 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1227
IVSLLG+FLSSFTETEKEMVS+ER L+YMD+PQEE G LSPDWP QG+IEFQ+VT++
Sbjct: 1096 IVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQSVTLK 1155
Query: 1228 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1287
Y PSLPAAL +++F I GGTQVGI+GRTGAGKSS+LNALFRLTPIC G I +DG++I N
Sbjct: 1156 YMPSLPAALCNLSFRIVGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGVDIKNI 1215
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1346
PVR+LR A+VPQSPFLFEGSLRDNLDP MNDDLKIW+VLEKCHVKEEVEA GL+
Sbjct: 1216 PVRELRTHLAIVPQSPFLFEGSLRDNLDPLKMNDDLKIWNVLEKCHVKEEVEAAGGLDVL 1275
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406
VKE+G+SFSVGQRQL+CLARALLKSSKVLCLDECTANVD QTAS+LQN ISSECKGMTVI
Sbjct: 1276 VKEAGMSFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECKGMTVI 1335
Query: 1407 TIAHRISTVLNMDEILILDHGHL 1429
TIAHRISTV+NMD ILILDHG L
Sbjct: 1336 TIAHRISTVINMDSILILDHGKL 1358
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443168|ref|XP_002264313.1| PREDICTED: ABC transporter C family member 13-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1939 bits (5023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 970/1259 (77%), Positives = 1086/1259 (86%), Gaps = 15/1259 (1%)
Query: 186 EESLLSVDGDVEEDCNTDS----------SYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 235
+E L S ++E + N D+ SYW L+ FK+I SVMN GV+KQLDFEDLL L
Sbjct: 23 KELLFSKTYNLEVEANMDTLTGQLKGKTQSYWHLLTFKAITSVMNHGVVKQLDFEDLLQL 82
Query: 236 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 295
P DMDPS+CH+ LLSCW AQ+ NC+NPSL RAICCAYG+PY LGLLKVVND IGF GP
Sbjct: 83 PIDMDPSSCHATLLSCWHAQQRHNCSNPSLFRAICCAYGWPYFRLGLLKVVNDCIGFVGP 142
Query: 296 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355
+LLN LI+FLQQGSG+LDGY+LA+A+GL I KSF DTQY+FHLSKLKLKLRSSIMT+IY
Sbjct: 143 VLLNNLIRFLQQGSGNLDGYILAVAMGLIPIFKSFLDTQYTFHLSKLKLKLRSSIMTVIY 202
Query: 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 415
KCL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKF
Sbjct: 203 HKCLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKF 262
Query: 416 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 475
AFVSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F
Sbjct: 263 AFVSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLF 322
Query: 476 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 535
SWLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCL
Sbjct: 323 MSWLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCL 382
Query: 536 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS- 593
ALFN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S
Sbjct: 383 ALFNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQF 442
Query: 594 NFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI 653
NF +DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSI
Sbjct: 443 NFKLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSI 502
Query: 654 LGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 713
L EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DIS
Sbjct: 503 LKEMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDIS 562
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
LMVGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI
Sbjct: 563 LMVGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAI 622
Query: 774 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTS 833
+GP M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+GSS D +VS YS F S NEF S
Sbjct: 623 LGPLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVGSSTDFSVSSYSTFCSLNEFTVS 682
Query: 834 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 893
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SG
Sbjct: 683 -QVRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSG 741
Query: 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTT-GSSQTKYSTSFYLVVLCIFCMFNSFLT 952
WFIT+VICLSAILMQASRNGNDLWLSYWVDTT GSS T+YSTSFYLVVLCIFC+ NSFLT
Sbjct: 742 WFITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVVLCIFCVINSFLT 801
Query: 953 LVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1012
LVRAFSFAFG LRAAV+VHNTLL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFI
Sbjct: 802 LVRAFSFAFGGLRAAVQVHNTLLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFI 861
Query: 1013 LNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSP 1072
LNILLAN VGLLGIA+VLSYVQV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSP
Sbjct: 862 LNILLANIVGLLGIAIVLSYVQVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSP 921
Query: 1073 IYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1132
I+ASFTETL+GSSTIRAFK ED F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +
Sbjct: 922 IFASFTETLDGSSTIRAFKCEDLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALV 981
Query: 1133 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1192
ISF+A MAVIGSR +LP + TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERV
Sbjct: 982 ISFVAMMAVIGSRDSLPISLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERV 1041
Query: 1193 LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1252
L+YMD+PQEEL G QSLSP+WP +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+
Sbjct: 1042 LQYMDIPQEELNGCQSLSPNWPSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGII 1101
Query: 1253 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1312
GRTGAGKSSILNALFRLTPIC G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRD
Sbjct: 1102 GRTGAGKSSILNALFRLTPICKGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRD 1161
Query: 1313 NLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKS 1371
NLDPF ++DDLKIW LE+CHVKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKS
Sbjct: 1162 NLDPFRVSDDLKIWKTLERCHVKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKS 1221
Query: 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
SKVLCLDECTAN+DAQT+S+LQNAI +EC+GMTVITIAHRISTVL+MD ILILD G LV
Sbjct: 1222 SKVLCLDECTANIDAQTSSVLQNAILTECRGMTVITIAHRISTVLSMDNILILDRGILV 1280
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|156556172|emb|CAO94660.1| Multidrug Resistance associated Protein 1 [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 1924 bits (4983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 969/1437 (67%), Positives = 1169/1437 (81%), Gaps = 15/1437 (1%)
Query: 1 MDFICPNSPFVWDGSTFSKCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKV 60
+ ICP+SP+VW+G+ S+CF +++L F NM T+ +I+++G+T+RS R+++RI+L K+
Sbjct: 4 LKHICPDSPYVWNGNGVSRCFSNIVLGFGANMATLIVIVLVGVTRRSGRRSRRIHLSAKI 63
Query: 61 FLHILPLVGACLSSVDVILLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHCL 120
L +P +GA +S ++++LL++ + G ++ E+L S F VW ++L+S C + +
Sbjct: 64 LLFTVPALGAFVSFFEIVVLLRKIVGGYPFAFQEYLFPGSLFGVWVTVLLVSICDYWFVI 123
Query: 121 FCHRILCFWWIIKPVMGILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASS 180
FC+R+LC WWIIKP + I H V F+S E+L CL E L LD FGI INII+ K AS
Sbjct: 124 FCNRLLCLWWIIKPFLWIPHLQVVFTSQELLPCLGESFLAFLDFTFGILINIIKSKWASH 183
Query: 181 RRS--SIEESLLSVDGDVEEDCNT---DSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGL 235
R S SIEE LL D + C ++ W ++ FKSIDSVM GV +QLDF DLL L
Sbjct: 184 RSSCDSIEEPLLPCKVDAKGHCGILGLANNLWRIITFKSIDSVMENGVKRQLDFNDLLQL 243
Query: 236 PTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGP 295
P DMD S C++ L CW+AQ+ N +NPSL++A+CCAYG+PY +GLLKV+ND + F GP
Sbjct: 244 PEDMDSSCCYNLLQHCWEAQQRNNNSNPSLLKAVCCAYGWPYFRIGLLKVINDCLSFVGP 303
Query: 296 LLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355
+LLNKLIKFLQQGS H DGY+ AI+LGL+S+LKSF DTQYSFHL+++KLKLRSSIMTI+Y
Sbjct: 304 VLLNKLIKFLQQGSNHYDGYIFAISLGLSSVLKSFLDTQYSFHLARIKLKLRSSIMTIVY 363
Query: 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKF 415
KCL VRLAERS+FS+GEIQTFMSVD DRTVNL NSFHD WSLP QIGVALYLLY QVKF
Sbjct: 364 CKCLSVRLAERSKFSEGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYVQVKF 423
Query: 416 AFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIF 475
AF+SG+AITILLIPVNKWIA LIA AT+ MM+QKDERIRRT E+LT+IRTLKMYGWE +F
Sbjct: 424 AFLSGIAITILLIPVNKWIAQLIAKATKSMMEQKDERIRRTAELLTYIRTLKMYGWELLF 483
Query: 476 SSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCL 535
+SWLMKTRS EVKHLSTRKYLDAWCVFFWATTPTLFSL TFGL+ LMGHQLDAA VFTCL
Sbjct: 484 ASWLMKTRSLEVKHLSTRKYLDAWCVFFWATTPTLFSLCTFGLYTLMGHQLDAATVFTCL 543
Query: 536 ALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSN 594
ALFN+LISPLNSFPWVINGLIDAFIS RL+ +L C E+K LE+ N P+ SN L N
Sbjct: 544 ALFNNLISPLNSFPWVINGLIDAFISSGRLSNYLSCCEHKVALEKTGNYPTPSCSNNLEN 603
Query: 595 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 654
MAV + DA C+W ++++E +++L++++L +PKG LVAV+GEVGSGKS+LLN IL
Sbjct: 604 -----MAVTICDACCTWSSSDKKEFDLLLHKITLQVPKGCLVAVVGEVGSGKSALLNLIL 658
Query: 655 GEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
E+ L GS+ +GS+ YVPQVPWILSGTIRDNILFG ++P+ YS+ LKAC LD DISL
Sbjct: 659 EEVRLVSGSLSLTGSVTYVPQVPWILSGTIRDNILFGTEFNPRRYSDVLKACALDFDISL 718
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
M+GGDMA IGEKG+NLSGGQRARLALARA+Y GS+IYMLDDVLSAVDA VA IL+NAI+
Sbjct: 719 MMGGDMACIGEKGLNLSGGQRARLALARAIYCGSEIYMLDDVLSAVDAHVASSILNNAIL 778
Query: 775 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL 834
GP M Q+TRILCTHN+QAI AAD+VV MDKG+VKW+GS ++L VS Y S + + S
Sbjct: 779 GPLMNQQTRILCTHNIQAIYAADVVVEMDKGRVKWVGSPSNLTVSSYLALPSIDNLNGSS 838
Query: 835 HMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 894
+ K+ +R+ +S + +QE+D +++ + QE IE E RKEG+VEL VYKNYA F+GW
Sbjct: 839 EVHKKVIRSAVASETIE-EVQEQDHLNLLEAVQETIEAETRKEGKVELIVYKNYAAFAGW 897
Query: 895 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLV 954
FIT+ C SAI MQASRNGNDLWLSYWVDTTGSSQ +ST+FYLV+LC+FC NS LTLV
Sbjct: 898 FITIATCFSAIFMQASRNGNDLWLSYWVDTTGSSQKNFSTTFYLVILCLFCFVNSSLTLV 957
Query: 955 RAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1014
RAFSFA+G LRAA VH+ +L +++NA V F+DQTP GRILNRFSSDLY IDDSLPFILN
Sbjct: 958 RAFSFAYGGLRAAKVVHDQMLNRLINATVSFYDQTPTGRILNRFSSDLYTIDDSLPFILN 1017
Query: 1015 ILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIY 1074
ILLANFVGLLGIA+VLSYVQV FLLLL+PFW+IYSK+QF+YRSTSRELRRLDSVSRSPIY
Sbjct: 1018 ILLANFVGLLGIAIVLSYVQVLFLLLLLPFWYIYSKIQFYYRSTSRELRRLDSVSRSPIY 1077
Query: 1075 ASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS 1134
ASFTETL+G+STIRAFKSED+F+ +F +H+ LYQRTSYSE+TASLWLSLRLQLLAAFI+S
Sbjct: 1078 ASFTETLDGASTIRAFKSEDFFLFRFIQHITLYQRTSYSEVTASLWLSLRLQLLAAFIVS 1137
Query: 1135 FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLE 1194
F+A MAVIG+ +LP TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+
Sbjct: 1138 FVAVMAVIGAHKHLPINLGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQ 1197
Query: 1195 YMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGR 1254
YMD+PQEE+ + +WP G I+FQNVT+RY PSLPAALHD++FTI GGTQVG++GR
Sbjct: 1198 YMDIPQEEVG--MLIEHNWPSHGEIQFQNVTLRYMPSLPAALHDVSFTISGGTQVGVIGR 1255
Query: 1255 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL 1314
TGAGKSSILNALFRL I GG+ILVD ++I +R LR + AVVPQSPFLF+ SLR NL
Sbjct: 1256 TGAGKSSILNALFRLNSITGGRILVDDVDISIVSLRHLRSQLAVVPQSPFLFKASLRANL 1315
Query: 1315 DPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1373
DPF DD IW+VL+KCHVKEEVEA+ GL+ VKESG SFSVGQRQL+CLARALLKSSK
Sbjct: 1316 DPFKEKDDADIWNVLKKCHVKEEVEALGGLDIEVKESGTSFSVGQRQLLCLARALLKSSK 1375
Query: 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
VLCLDECTAN+D QTAS LQNAI++EC+G TVITIAHRISTVLNMD ILILD G LV
Sbjct: 1376 VLCLDECTANIDTQTASKLQNAIANECRGTTVITIAHRISTVLNMDNILILDQGILV 1432
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184186|ref|NP_178811.7| multidrug resistance-associated protein 11 [Arabidopsis thaliana] gi|330251033|gb|AEC06127.1| multidrug resistance-associated protein 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1805 bits (4675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1416 (65%), Positives = 1115/1416 (78%), Gaps = 57/1416 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDD-Q 189
Query: 198 EDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRS 257
+ + S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CWQ Q
Sbjct: 190 KRIEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCWQLQEC 249
Query: 258 CNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVL 317
N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 250 NNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK-------------- 295
Query: 318 AIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTF 377
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTF
Sbjct: 296 -----------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTF 344
Query: 378 MSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANL 437
MSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ L
Sbjct: 345 MSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVL 404
Query: 438 IANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 497
IA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLD
Sbjct: 405 IASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLD 464
Query: 498 AWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLID 557
AWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLID
Sbjct: 465 AWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLID 524
Query: 558 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
AFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W N EE
Sbjct: 525 AFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEE 573
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVP
Sbjct: 574 DYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVP 633
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
W+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR
Sbjct: 634 WLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRAR 693
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAAD 797
ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QAIS AD
Sbjct: 694 FALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCAD 753
Query: 798 MVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQ 855
M+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ + + ++
Sbjct: 754 MIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIK 804
Query: 856 EKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGND 915
E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGND
Sbjct: 805 EDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGND 864
Query: 916 LWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLL 975
LWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L+
Sbjct: 865 LWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALI 924
Query: 976 TKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV 1035
+K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV
Sbjct: 925 SKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQV 984
Query: 1036 FFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1095
FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++
Sbjct: 985 LFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEH 1044
Query: 1096 FMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTP 1155
F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +F TP
Sbjct: 1045 FVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTP 1104
Query: 1156 GLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPF 1215
GLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP
Sbjct: 1105 GLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPV 1164
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G
Sbjct: 1165 HGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSG 1224
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK
Sbjct: 1225 EILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVK 1284
Query: 1336 EEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N
Sbjct: 1285 AAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHN 1344
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
ISSECKG+TVITIAHRISTV+++D ILILD G LV
Sbjct: 1345 TISSECKGVTVITIAHRISTVVDLDSILILDRGILV 1380
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298286923|sp|Q9SKX0.3|AB13C_ARATH RecName: Full=ABC transporter C family member 13; Short=ABC transporter ABCC.13; Short=AtABCC13; AltName: Full=ATP-energized glutathione S-conjugate pump 11; AltName: Full=Glutathione S-conjugate-transporting ATPase 11; AltName: Full=Multidrug resistance-associated protein 11 | Back alignment and taxonomy information |
|---|
Score = 1801 bits (4665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 922/1421 (64%), Positives = 1114/1421 (78%), Gaps = 61/1421 (4%)
Query: 19 KCFDDMILDFATNMVTIFIILIIGITQRSPRQNQRINLMEKVFLHILPLVGACLSSVDVI 78
K D++L F N+VT+ +ILI+ IT+R+ R N+R + +EK L++ P +GACLS VD++
Sbjct: 18 KRLGDIVLGFGANVVTLLLILILTITRRNGRCNRRKSYIEKCLLYVTPALGACLSCVDLV 77
Query: 79 LLLKEKLHGEFVSYHEWLSSCSEFTVWTIIVLLSRCACFHC-LFCHRILCFWWIIKPVMG 137
LL++ E + LS F +W ++L + AC C +F +ILCFWWI + +
Sbjct: 78 LLVRTNRRREVILCFVPLSG---FVMWIAVILSLKFACCACHVFTSQILCFWWIFRFLTD 134
Query: 138 ILHQLVTFSSFEVLKCLKEICLVLLDIMFGISINIIRVKRASSRRSSIEESLLSVDGDVE 197
LH + F+ L+ ++EICL++LDI FGISIN++R+K+A + +E+ L+ D D +
Sbjct: 135 ALHLNMIFT----LQRVQEICLIMLDIAFGISINVLRIKQAHPKIIPLEDPLIEDDDDQK 190
Query: 198 EDC-----NTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW 252
+ S+WDL F I S+M G +KQL+ E+LL LP +MDP TC LL CW
Sbjct: 191 RIVRRLFLEKNGSWWDLFTFGYIGSIMKHGSVKQLELENLLTLPPEMDPFTCCENLLRCW 250
Query: 253 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 312
Q Q N + PSL+ +I YG+PY LGLLKV ND IGFAGPLLLN+LIK
Sbjct: 251 QLQECNNYSTPSLIWSIYGVYGWPYFRLGLLKVFNDCIGFAGPLLLNRLIK--------- 301
Query: 313 DGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDG 372
SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+G
Sbjct: 302 ----------------SFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEG 345
Query: 373 EIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNK 432
EIQTFMSVD DR VNL NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNK
Sbjct: 346 EIQTFMSVDADRIVNLCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNK 405
Query: 433 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLST 492
WI+ LIA+ATEKMMK KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+T
Sbjct: 406 WISVLIASATEKMMKLKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLAT 465
Query: 493 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 552
RKYLDAWCVFFWATTPTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVI
Sbjct: 466 RKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVI 525
Query: 553 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWY 612
NGLIDAFIS RR+++FL C E+ + I +G F S+D+AV ++DA+C+W
Sbjct: 526 NGLIDAFISTRRVSKFLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWS 574
Query: 613 CNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY 672
N EE+ N+ + QVSL +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AY
Sbjct: 575 SNVEEDYNLTIKQVSLRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAY 634
Query: 673 VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732
VPQVPW+LSGT+R+NILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSG
Sbjct: 635 VPQVPWLLSGTVRENILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSG 694
Query: 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 792
GQRAR ALARAVYHGSD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+QA
Sbjct: 695 GQRARFALARAVYHGSDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQA 754
Query: 793 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANK 850
IS ADM+VVMDKG+V W GS D+ S+ F TNEFD S H+ K++ +
Sbjct: 755 ISCADMIVVMDKGKVNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------E 805
Query: 851 QILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQAS 910
+ ++E V +S+ A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ S
Sbjct: 806 TLSIKEDGVDEISEAAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGS 865
Query: 911 RNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970
RNGNDLWLSYWVD TG + YSTSFYL+VLCIFC+ NS LTLVRAFSFAFG L+AAV V
Sbjct: 866 RNGNDLWLSYWVDKTGKGVSHYSTSFYLMVLCIFCIINSILTLVRAFSFAFGGLKAAVHV 925
Query: 971 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVL 1030
HN L++K++NAP FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVL
Sbjct: 926 HNALISKLINAPTQFFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVL 985
Query: 1031 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1090
SYVQV FLLLL+PFW+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAF
Sbjct: 986 SYVQVLFLLLLLPFWYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAF 1045
Query: 1091 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPA 1150
KSE++F+ +F EH+ LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P
Sbjct: 1046 KSEEHFVGRFIEHLTLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPI 1105
Query: 1151 TFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1210
+F TPGLVGLALSYAAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS
Sbjct: 1106 SFGTPGLVGLALSYAAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLS 1165
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
WP GL+EF NVTMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLT
Sbjct: 1166 DKWPVHGLVEFHNVTMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLT 1225
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
P+C G+ILVDG NI + P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+
Sbjct: 1226 PVCSGEILVDGKNISHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILD 1285
Query: 1331 KCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
KC VK VE+V GL+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TA
Sbjct: 1286 KCKVKAAVESVGGLDSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTA 1345
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
S+L N ISSECKG+TVITIAHRISTV+++D ILILD G LV
Sbjct: 1346 SLLHNTISSECKGVTVITIAHRISTVVDLDSILILDRGILV 1386
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831764|ref|XP_002883764.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] gi|297329604|gb|EFH60023.1| ATMRP11 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1695 bits (4390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 850/1213 (70%), Positives = 991/1213 (81%), Gaps = 45/1213 (3%)
Query: 219 MNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 278
M G +KQL+FE+LL LP DMDP TC LL CWQ Q N + PSL+ +I YG+PY
Sbjct: 1 MKHGSVKQLEFENLLPLPPDMDPFTCCENLLRCWQLQECNNYSTPSLIWSISGVYGWPYF 60
Query: 279 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFH 338
LGLLKV ND IGFAGPL LN+LIK SF DTQY+F
Sbjct: 61 RLGLLKVFNDCIGFAGPLFLNRLIK-------------------------SFLDTQYTFR 95
Query: 339 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 398
LSK KLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VNL NS HD WSL
Sbjct: 96 LSKFKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVNLCNSLHDMWSL 155
Query: 399 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGE 458
P QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK KDERIR+TGE
Sbjct: 156 PLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMKLKDERIRKTGE 215
Query: 459 ILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGL 518
+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATTPTLFSL TFGL
Sbjct: 216 LLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATTPTLFSLCTFGL 275
Query: 519 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 578
FALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++FL C E+ +
Sbjct: 276 FALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSKFLCCLEHSRDF 335
Query: 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638
I +GL+ S+D+AV ++DA+ +W N EE+ N+ + VSL +PKGS VAV
Sbjct: 336 S--------IDSGLT---SEDLAVFVEDASSTWSSNLEEDYNLTIKHVSLRVPKGSFVAV 384
Query: 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQS 698
IGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPWILSGTIR+NILFGK +D +S
Sbjct: 385 IGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWILSGTIRENILFGKPFDSKS 444
Query: 699 YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 758
Y ETL AC LDVDISLM GGDMA IG+KGVNLSGGQRARLALARAVYHGSD+Y+LDDVLS
Sbjct: 445 YFETLSACALDVDISLMAGGDMACIGDKGVNLSGGQRARLALARAVYHGSDMYLLDDVLS 504
Query: 759 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818
AVD+QV WIL A++GP + +KTR++CTHN+QAIS ADM+VVMDKG+VKW G+ D+
Sbjct: 505 AVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQAISCADMIVVMDKGKVKWSGTVTDMPK 564
Query: 819 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 878
S+ F +N+FD N + K+ L +KD + +A +I+++E+RKEG
Sbjct: 565 SISPTFSLSNDFDMP--------SPNHLTKRKEPLSIKKDDLDEISEAADIVKLEERKEG 616
Query: 879 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYL 938
RVE+TVY+NYA FSGWFI +VI +SA+LMQASRNGNDLWLSYWVD TG + YSTSFYL
Sbjct: 617 RVEVTVYRNYAAFSGWFIAIVILVSAVLMQASRNGNDLWLSYWVDKTGRGVSHYSTSFYL 676
Query: 939 VVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRF 998
+VLCIFC+ NS LTLVRAFSFAFG L+AAV VH+ L++K++NAP FFDQTP GRILNRF
Sbjct: 677 MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHSALISKLINAPTQFFDQTPSGRILNRF 736
Query: 999 SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058
SSDLY IDDSLPFILNILLANFVGLLGI VLSYVQV FLLLL+PFW+IYSKLQFFYRST
Sbjct: 737 SSDLYTIDDSLPFILNILLANFVGLLGIIAVLSYVQVLFLLLLLPFWYIYSKLQFFYRST 796
Query: 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118
SRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+A+F EH+ LYQRTSYSE+ AS
Sbjct: 797 SRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVARFIEHLTLYQRTSYSEIIAS 856
Query: 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
LWLSLRLQLL A I+ F+A MAV+GSRGN P +F TPGLVGLALSYAAP+VSLLG+FL+S
Sbjct: 857 LWLSLRLQLLGAMIVLFVAVMAVLGSRGNFPISFGTPGLVGLALSYAAPLVSLLGSFLTS 916
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1238
FTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP QGL+EF NVTMRY +LP AL+
Sbjct: 917 FTETEKEMVSIERVLQYMDVPQEEVSGRQSLSGKWPVQGLVEFHNVTMRYISTLPPALNH 976
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298
I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG+NI + P+R LR AV
Sbjct: 977 ISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCNGEILVDGININHLPIRKLRSHLAV 1036
Query: 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE-AVGLETFVKESGISFSVG 1357
VPQSPFLF+GSLRDNLDP +++D +IW +LEKC VK EVE A GL++ VKESG S+SVG
Sbjct: 1037 VPQSPFLFQGSLRDNLDPLGLSEDWRIWEILEKCKVKAEVESAGGLDSNVKESGCSYSVG 1096
Query: 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417
QRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N IS+ECKG+TVITIAHRISTVL+
Sbjct: 1097 QRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISTECKGVTVITIAHRISTVLD 1156
Query: 1418 MDEILILDHGHLV 1430
+D ILILD G LV
Sbjct: 1157 LDSILILDRGILV 1169
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298204674|emb|CBI25172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1637 bits (4240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1118 (74%), Positives = 929/1118 (83%), Gaps = 69/1118 (6%)
Query: 358 CLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAF 417
CL V LAERS+FS+GEIQTFMSVD DR VNL NSFHD WSLP QIG+ALYLLYTQVKFAF
Sbjct: 87 CLCVNLAERSKFSEGEIQTFMSVDADRIVNLCNSFHDMWSLPLQIGLALYLLYTQVKFAF 146
Query: 418 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSS 477
VSG+AITILLIPVNKWI+ IA ATEKMMK+KDERI +T EIL +IRTLKMYGWE +F S
Sbjct: 147 VSGIAITILLIPVNKWISKFIARATEKMMKKKDERISKTAEILAYIRTLKMYGWELLFMS 206
Query: 478 WLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLAL 537
WLM+ RSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF LMG+QLDAAMVFTCLAL
Sbjct: 207 WLMEIRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFTLMGYQLDAAMVFTCLAL 266
Query: 538 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK-HELEQAANSPSYISNGLS-NF 595
FN+LISPLNSFPWVINGLIDA IS RRL+RFL CSE+K ELEQ A SPS S NF
Sbjct: 267 FNTLISPLNSFPWVINGLIDAIISTRRLSRFLSCSEHKPAELEQTAGSPSSPSFSGQFNF 326
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+DMAV M DA+C+W + E E+++VL+ V+L LP+GSLVA+IGEVGSGKSSLLNSIL
Sbjct: 327 KLEDMAVAMYDASCAWSSSEEVEKDLVLHHVTLGLPRGSLVAIIGEVGSGKSSLLNSILK 386
Query: 656 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
EM L HGSI++ GSI YVPQVPWILSGTIR+NILFGK YDP YS+ L+AC LD+DISLM
Sbjct: 387 EMRLIHGSIYSDGSITYVPQVPWILSGTIRENILFGKAYDPTRYSDVLEACALDIDISLM 446
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
VGGDMAYIG+KGVNLSGGQRARLALARA+YHGSDI+MLDDVLSAVD QVAR IL NAI+G
Sbjct: 447 VGGDMAYIGDKGVNLSGGQRARLALARAIYHGSDIFMLDDVLSAVDTQVARCILHNAILG 506
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLH 835
P M Q TR+LCTHN+QA+S+ADM+VVMDKG VKW+G
Sbjct: 507 PLMNQHTRVLCTHNIQAMSSADMIVVMDKGHVKWVG------------------------ 542
Query: 836 MQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWF 895
++ E TN S+ KQ E+D + V +AQEIIEVE RKEGRVELTVYK+YA +SGWF
Sbjct: 543 IRSLECSTNTSTETKQDCKPERDSICVPGEAQEIIEVELRKEGRVELTVYKSYATYSGWF 602
Query: 896 ITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFY----------------- 937
IT+VICLSAILMQASRNGNDLWLSYWVD TTGSS T+YSTSFY
Sbjct: 603 ITVVICLSAILMQASRNGNDLWLSYWVDTTTGSSHTEYSTSFYLVLLVLIKEEFVKSMVE 662
Query: 938 ------------------------LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973
LVVLCIFC+ NSFLTLVRAFSFAFG LRAAV+VHNT
Sbjct: 663 HEQFYVNVQCFLNEFEANGVSFFLLVVLCIFCVINSFLTLVRAFSFAFGGLRAAVQVHNT 722
Query: 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYV 1033
LL+K++NAPV FFD+TPGGRILNR SSDLY IDDSLPFILNILLAN VGLLGIA+VLSYV
Sbjct: 723 LLSKLINAPVHFFDKTPGGRILNRMSSDLYTIDDSLPFILNILLANIVGLLGIAIVLSYV 782
Query: 1034 QVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE 1093
QV FLLLL+PFW++YSK+QF+YRSTSRELRRLDSVSRSPI+ASFTETL+GSSTIRAFK E
Sbjct: 783 QVVFLLLLLPFWYVYSKIQFYYRSTSRELRRLDSVSRSPIFASFTETLDGSSTIRAFKCE 842
Query: 1094 DYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFS 1153
D F +F EHV LYQ+TSYSEL ASLWLSLRLQLLAA +ISF+A MAVIGSR +LP +
Sbjct: 843 DLFFTRFSEHVALYQQTSYSELIASLWLSLRLQLLAALVISFVAMMAVIGSRDSLPISLG 902
Query: 1154 TPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213
TPGLVGLALSYAAPIVSLLG+FL+SFTETEKEMVS+ERVL+YMD+PQEEL G QSLSP+W
Sbjct: 903 TPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERVLQYMDIPQEELNGCQSLSPNW 962
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P +G I FQNV++RY PSLP ALHDI FTI GGTQVGI+GRTGAGKSSILNALFRLTPIC
Sbjct: 963 PSEGYIMFQNVSLRYLPSLPDALHDITFTISGGTQVGIIGRTGAGKSSILNALFRLTPIC 1022
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
G ILVDGL+I + PVRDLR FAVVPQSPFLFEGSLRDNLDPF ++DDLKIW LE+CH
Sbjct: 1023 KGCILVDGLDIADVPVRDLRSHFAVVPQSPFLFEGSLRDNLDPFRVSDDLKIWKTLERCH 1082
Query: 1334 VKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
VKEEVE A GL+ VKESG SFSVGQRQL+CLARALLKSSKVLCLDECTAN+DAQT+S+L
Sbjct: 1083 VKEEVEVAGGLDIHVKESGTSFSVGQRQLLCLARALLKSSKVLCLDECTANIDAQTSSVL 1142
Query: 1393 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
QNAI +EC+GMTVITIAHRISTVL+MD ILILD G LV
Sbjct: 1143 QNAILTECRGMTVITIAHRISTVLSMDNILILDRGILV 1180
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5001458|gb|AAD37023.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1568 bits (4059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 782/1107 (70%), Positives = 921/1107 (83%), Gaps = 34/1107 (3%)
Query: 328 KSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN 387
+SF DTQY+F LSKLKLKLRSSIM++IY+KCL+V A RS FS+GEIQTFMSVD DR VN
Sbjct: 46 RSFLDTQYTFRLSKLKLKLRSSIMSVIYRKCLWVNTANRSGFSEGEIQTFMSVDADRIVN 105
Query: 388 LANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMK 447
L NS HD WSLP QIG+ALYLLYTQVKFAF+SGLAITILLIPVNKWI+ LIA+ATEKMMK
Sbjct: 106 LCNSLHDLWSLPLQIGIALYLLYTQVKFAFLSGLAITILLIPVNKWISVLIASATEKMMK 165
Query: 448 QKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 507
KDERIR+TGE+LT+IRTLKMYGW+ F+ WL +TR++EV HL+TRKYLDAWCVFFWATT
Sbjct: 166 LKDERIRKTGELLTNIRTLKMYGWDNWFADWLKETRATEVTHLATRKYLDAWCVFFWATT 225
Query: 508 PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567
PTLFSL TFGLFALMGHQLDAA VFTCLALFNSLISPLNSFPWVINGLIDAFIS RR+++
Sbjct: 226 PTLFSLCTFGLFALMGHQLDAATVFTCLALFNSLISPLNSFPWVINGLIDAFISTRRVSK 285
Query: 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 627
FL C E+ + I +G F S+D+AV ++DA+C+W N EE+ N+ + QVS
Sbjct: 286 FLCCLEHSRDFS--------IDSG---FTSEDLAVCVEDASCTWSSNVEEDYNLTIKQVS 334
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDN 687
L +PKGS VAVIGEVGSGK+SLLNS+LGEM HGSI +GS+AYVPQVPW+LSGT+R+N
Sbjct: 335 LRVPKGSFVAVIGEVGSGKTSLLNSLLGEMRCVHGSILLNGSVAYVPQVPWLLSGTVREN 394
Query: 688 ILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747
ILFGK +D + Y ETL AC LDVDISLMVGGDMA IG+KG+NLSGGQRAR ALARAVYHG
Sbjct: 395 ILFGKPFDSKRYFETLSACALDVDISLMVGGDMACIGDKGLNLSGGQRARFALARAVYHG 454
Query: 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 806
SD+Y+LDDVLSAVD+QV WIL A++GP + +KTR++CTHN+Q + + M+VVMDKG+
Sbjct: 455 SDMYLLDDVLSAVDSQVGCWILQRALLGPLLNKKTRVMCTHNIQVSNLSTHMIVVMDKGK 514
Query: 807 VKWIGSSADLAVSLYSGFWSTNEFDTSL--HMQKQEMRTNASSANKQILLQEKDVVSVSD 864
V W GS D+ S+ F TNEFD S H+ K++ + + ++E V +S+
Sbjct: 515 VNWSGSVTDMPKSISPTFSLTNEFDMSSPNHLTKRK---------ETLSIKEDGVDEISE 565
Query: 865 DAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDT 924
A +I+++E+RKEGRVE+ VY+NYA FSGWFIT+VI +SA+LMQ SRNGNDLWLSYWVD
Sbjct: 566 AAADIVKLEERKEGRVEMMVYRNYAVFSGWFITIVILVSAVLMQGSRNGNDLWLSYWVDK 625
Query: 925 TGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984
TG +VLCIFC+ NS LTLVRAFSFAFG L+AAV VHN L++K++NAP
Sbjct: 626 TGKG----------MVLCIFCIINSILTLVRAFSFAFGGLKAAVHVHNALISKLINAPTQ 675
Query: 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPF 1044
FFDQTP GRILNRFSSDLY IDDSLPFILNILLANFVGLLGI VVLSYVQV FLLLL+PF
Sbjct: 676 FFDQTPSGRILNRFSSDLYTIDDSLPFILNILLANFVGLLGIIVVLSYVQVLFLLLLLPF 735
Query: 1045 WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHV 1104
W+IYSKLQ FYRSTSRELRRLDSVSRSPIYASFTETL+GSSTIRAFKSE++F+ +F EH+
Sbjct: 736 WYIYSKLQVFYRSTSRELRRLDSVSRSPIYASFTETLDGSSTIRAFKSEEHFVGRFIEHL 795
Query: 1105 VLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSY 1164
LYQRTSYSE+ ASLWLSLRLQLL + I+ F+A MAV+GS GN P +F TPGLVGLALSY
Sbjct: 796 TLYQRTSYSEIIASLWLSLRLQLLGSMIVLFVAVMAVLGSGGNFPISFGTPGLVGLALSY 855
Query: 1165 AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNV 1224
AAP+VSLLG+ L+SFTETEKEMVS+ERVL+YMDVPQEE+ G QSLS WP GL+EF NV
Sbjct: 856 AAPLVSLLGSLLTSFTETEKEMVSVERVLQYMDVPQEEVSGPQSLSDKWPVHGLVEFHNV 915
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
TMRY +LP AL I+FTI+GG VG++GRTGAGKSSILNALFRLTP+C G+ILVDG NI
Sbjct: 916 TMRYISTLPPALTQISFTIQGGMHVGVIGRTGAGKSSILNALFRLTPVCSGEILVDGKNI 975
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GL 1343
+ P+R+LR AVVPQSPFLF+GSLRDNLDP +++D +IW +L+KC VK VE+V GL
Sbjct: 976 SHLPIRELRSCLAVVPQSPFLFQGSLRDNLDPLGLSEDWRIWEILDKCKVKAAVESVGGL 1035
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
+++VKESG SFSVGQRQL+CLARALLKSSK+LCLDECTAN+D TAS+L N ISSECKG+
Sbjct: 1036 DSYVKESGCSFSVGQRQLLCLARALLKSSKILCLDECTANIDVHTASLLHNTISSECKGV 1095
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLV 1430
TVITIAHRISTV+++D ILILD G LV
Sbjct: 1096 TVITIAHRISTVVDLDSILILDRGILV 1122
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1446 | ||||||
| UNIPROTKB|E1C368 | 1515 | ABCC10 "Uncharacterized protei | 0.526 | 0.502 | 0.356 | 1e-235 | |
| UNIPROTKB|E1BNL1 | 1490 | ABCC10 "Uncharacterized protei | 0.338 | 0.328 | 0.439 | 1.7e-212 | |
| UNIPROTKB|F1PF73 | 1490 | ABCC10 "Uncharacterized protei | 0.360 | 0.350 | 0.417 | 4.7e-210 | |
| RGD|1306696 | 1499 | Abcc10 "ATP-binding cassette, | 0.410 | 0.396 | 0.371 | 1.9e-209 | |
| UNIPROTKB|Q5T3U5 | 1492 | ABCC10 "Multidrug resistance-a | 0.440 | 0.426 | 0.364 | 3.4e-209 | |
| MGI|MGI:2386976 | 1501 | Abcc10 "ATP-binding cassette, | 0.419 | 0.404 | 0.365 | 4.5e-209 | |
| FB|FBgn0032018 | 1487 | CG7806 [Drosophila melanogaste | 0.818 | 0.796 | 0.352 | 3.1e-186 | |
| FB|FBgn0032456 | 1549 | MRP "Multidrug-Resistance like | 0.384 | 0.358 | 0.386 | 2.5e-181 | |
| UNIPROTKB|F1RRK8 | 1479 | LOC100736948 "Uncharacterized | 0.338 | 0.331 | 0.434 | 7.3e-181 | |
| UNIPROTKB|F1RTA1 | 1537 | ABCC3 "Uncharacterized protein | 0.390 | 0.366 | 0.381 | 1.6e-178 |
| UNIPROTKB|E1C368 ABCC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1184 (421.8 bits), Expect = 1.0e-235, Sum P(3) = 1.0e-235
Identities = 280/786 (35%), Positives = 423/786 (53%)
Query: 203 DSSYWDLMAFKS-IDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQAQRSCNC 260
D W F + ++ +M RG +L+ +D+ LP + + + +CWQ
Sbjct: 228 DGESWLSRFFYAWMNPLMKRGYQWKLNQPQDVCLLPRKLQAARVCDRFYACWQKSHHAQE 287
Query: 261 TNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAI 319
T L+ + A+G + LGLLK+ +GF+GPLLLN L+ F++ L G + A+
Sbjct: 288 T-VRLLSVLHAAFGLRFYSLGLLKLAGSLLGFSGPLLLNLLVNFMESRQEPLSHGVLYAL 346
Query: 320 ALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 379
L S + + Q+S+ +++ IY+K L V S F+ GEI FMS
Sbjct: 347 GLFAGSFVGALLRNQFSYEVQKVTLMVRAAVISAIYRKALRVGSTSLSCFTVGEIVNFMS 406
Query: 380 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 439
DT R VN SFH+ WSLPFQ + LYLLY QV AF+ GLA+ +LL+P+NK IAN I
Sbjct: 407 TDTSRLVNFCLSFHEVWSLPFQFAITLYLLYQQVGVAFLGGLALALLLVPINKVIANRIM 466
Query: 440 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499
+ +M++ KD R++ E L+ IR +K Y WE+ FS+ + R+ E++ L KYLDA
Sbjct: 467 ESNAEMLEHKDARVKLMTEFLSGIRVIKFYAWEKHFSTRINTCRAKELQKLRAIKYLDAV 526
Query: 500 CVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAF 559
CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLNSFPWV+NG ++A
Sbjct: 527 CVYLWAALPVVVSIVIFITYVLMGHQLTATKVFTALALVGMLILPLNSFPWVLNGTLEAK 586
Query: 560 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMA-VIMQDATCSWYCXXXXX 618
+S+ R+ RFL + E A SPS + + + D + V +++ + S
Sbjct: 587 VSLDRIQRFLELVDQDLEAYYALGSPSGTATAI-DIRGADFSWVPVKEESTS---QPLST 642
Query: 619 XXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---SIAYVPQ 675
+L + KG L+ V+G+VGSGKSSLL +I GE++ G ++ Q
Sbjct: 643 GSLQLHIENLSVRKGMLLGVVGKVGSGKSSLLAAITGELIKQGGQVYICDLEQGFGLATQ 702
Query: 676 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQX 735
PWI T+R+NILFG+ YD + Y E ++AC L D++++ GD +GE GV LSGGQ
Sbjct: 703 EPWIQFTTVRENILFGRQYDARLYEEVVEACALSEDLNILPAGDQTEVGENGVTLSGGQK 762
Query: 736 XXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAIS 794
VY ++Y+LDD L+AVDA VA ++ I+G +LQ KTRILCTH + +
Sbjct: 763 ARIALARAVYQEKELYLLDDPLAAVDADVANHLMQKCILG--ILQHKTRILCTHRTEFLE 820
Query: 795 AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 854
AD +++MD G++ G AD+ + L + + + K + ++ ++ ++
Sbjct: 821 KADALLLMDNGRIIKTGPPADI-LPLVESVPKFKDMNKRRN-DKASVPADSDEQGQEEVI 878
Query: 855 QEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGN 914
+ + S+ D + + E++KEG ++ VYK Y G + L I S +LMQASRN +
Sbjct: 879 ETEAEESLQDKCL-LHKEEEKKEGALDFQVYKAYWLAMGSCLALSILFSLLLMQASRNIS 937
Query: 915 DLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970
D WLS+W+ T +S STS L +F + ++ ++A A A+V V
Sbjct: 938 DWWLSHWISSISQTANTSVMASSTSLPSTKLLLFSIVG-LVSPIQALDTAPVPSNASVDV 996
Query: 971 HNTLLT 976
N LT
Sbjct: 997 -NFYLT 1001
|
|
| UNIPROTKB|E1BNL1 ABCC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 1.7e-212, Sum P(3) = 1.7e-212
Identities = 218/496 (43%), Positives = 305/496 (61%)
Query: 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
FYL V NS TL+RA FA G+L+AA +H LL +++ APV FFD TP GR+L
Sbjct: 967 FYLTVYATIAGVNSLCTLLRAVLFAAGTLQAAATLHRRLLGRVLMAPVTFFDSTPTGRVL 1026
Query: 996 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1055
NRFSSD+ DDSLPFILNILLAN GLLG+ IY ++Q Y
Sbjct: 1027 NRFSSDVACADDSLPFILNILLANAAGLLGLLAVLGFSLPWLLLLLPPLSIIYYRVQSHY 1086
Query: 1056 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1115
R++SRELRRL S+S SP+Y +TL G +RA + F + + + L QR ++
Sbjct: 1087 RASSRELRRLGSLSLSPLYTHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFAAS 1146
Query: 1116 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1175
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1147 ATMQWLDIRLQLMGAAVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1202
Query: 1176 LSSFTETEKEMVSLERVLEYM-DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA 1234
+SSFT+TE +VS+ER+ EY D+PQE L W QG +EFQNV + Y+P LP
Sbjct: 1203 VSSFTQTEAMLVSVERLEEYSCDLPQEPRGQRPQLGISWLSQGSVEFQNVVLVYRPGLPN 1262
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ + +LR
Sbjct: 1263 ALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGMDTSQLELAELRS 1322
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGIS 1353
+ A++PQ PFLF G++R+NLDP + +D +W LE+CH+ E +E++G L+ + E G
Sbjct: 1323 QLAIIPQEPFLFSGTVRENLDPRGLYEDGALWQALEQCHLSEAIESMGGLDGELGEGGRR 1382
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ IS TV+TIAHR++
Sbjct: 1383 LSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTISKRFANKTVLTIAHRLN 1442
Query: 1414 TVLNMDEILILDHGHL 1429
T+LN D +L+L G +
Sbjct: 1443 TILNSDRVLVLHAGRV 1458
|
|
| UNIPROTKB|F1PF73 ABCC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 4.7e-210, Sum P(3) = 4.7e-210
Identities = 222/532 (41%), Positives = 319/532 (59%)
Query: 902 LSA-ILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 960
LSA +L+ + RN L+ S + +S FYL V NS T +RA FA
Sbjct: 935 LSAQLLLFSPRN---LYTSVFPLPKTASNGSSDIRFYLTVYATIAGVNSLCTFLRAVLFA 991
Query: 961 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1020
G+L+AA +H LL +++ APV FFD TP GR+LNRFSSD+ DDSLPF LNILLAN
Sbjct: 992 AGTLQAAATLHRRLLCRVLMAPVTFFDSTPAGRVLNRFSSDVACADDSLPFTLNILLANA 1051
Query: 1021 VGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1080
GLLG+ +Y ++Q YR++SRELRRL S++ SP+Y +T
Sbjct: 1052 AGLLGLLAVLGSGLPWLLLLLPVLSVLYYRVQRHYRASSRELRRLSSLTLSPLYTHLADT 1111
Query: 1081 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMA 1140
L G +RA + F + + + L QR ++ ++S IA +A
Sbjct: 1112 LAGLPVLRAAGATSRFEEENQRLLELNQRCQFAASATIQWLDIRLQLMGATVVSAIAGIA 1171
Query: 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM-DVP 1199
++ + L + PGLVGL+LSYA + LL +SSFT+TE +VS+ER+ EY D+P
Sbjct: 1172 LVQHQQGL----TNPGLVGLSLSYALSLTGLLSGLVSSFTQTETMLVSVERLEEYSCDLP 1227
Query: 1200 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259
QE L W QG +EFQ+V + Y+P LP AL + F ++ G ++GIVGRTG+GK
Sbjct: 1228 QEPQGQLPRLGVGWLTQGSVEFQDVVLVYRPGLPNALDGVTFRVQPGEKLGIVGRTGSGK 1287
Query: 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1319
SS+L LFRL G++L+DG++ + +LR + A++PQ PFLF G++R+NLDP +
Sbjct: 1288 SSLLLVLFRLLEPSSGRVLLDGVDTSQLELAELRSQLAIIPQEPFLFSGTVRENLDPQGL 1347
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVG-LETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
++D +W LE+CH+ E + ++G L+ + E G S S+GQRQL+CLARALL +K+LC+D
Sbjct: 1348 HEDRALWQALEQCHLSEVIVSLGGLDGELGEGGRSLSLGQRQLLCLARALLTDAKILCID 1407
Query: 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
E TA+VD +T +LQ I TV+TIAHR++T+LN D +L+L G +V
Sbjct: 1408 EATASVDQKTDQLLQQTICKRFANKTVLTIAHRLNTILNSDRVLVLQAGRVV 1459
|
|
| RGD|1306696 Abcc10 "ATP-binding cassette, subfamily C (CFTR/MRP), member 10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1017 (363.1 bits), Expect = 1.9e-209, Sum P(3) = 1.9e-209
Identities = 233/628 (37%), Positives = 341/628 (54%)
Query: 197 EEDCNTDSSYW-DLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCWQA 254
E + D W ++ + ++ RGV +L +D LP + P+ + W+
Sbjct: 211 EREVAEDGESWLSRFSYAWLAPLLARGVRGELRQPQDTCRLPRRLHPAYLARAFQAHWKE 270
Query: 255 QRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD- 313
L RA+ A+G YI LGLLK+V +GF+GPLLL+ L+ FL++G L
Sbjct: 271 -------GAQLWRALYGAFGCCYIALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSH 323
Query: 314 G--YVLAIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSD 371
G YVL +A G S++ + QY + +++I+Y+K L +L S
Sbjct: 324 GLLYVLGLASG--SVISAVLQNQYGYEVRKVTLQARVAVLSILYRKTL--KLGP-SRPPT 378
Query: 372 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVN 431
GE+ + D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVN
Sbjct: 379 GEVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYEQVGVAFLAGLVLALLLVPVN 438
Query: 432 KWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLS 491
K IA I ++M++ KD R++ E+L+ IR LK + WEQ + R+ E+ L
Sbjct: 439 KVIATRIMANNQEMLRHKDARVKLMTELLSGIRVLKFFRWEQALGDRVKACRTQELGRLR 498
Query: 492 TRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWV 551
KYLDA CV+ WA P + + F + L+GHQL A VFT LAL + LI PLN+FPWV
Sbjct: 499 VIKYLDAACVYLWAALPVVICIVIFITYVLLGHQLTATKVFTALALVHMLILPLNNFPWV 558
Query: 552 INGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 611
INGL+++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 559 INGLLESKVSLDRIQRFLDLPSYSPEAYYSPDPPTEPSTVLE----------LHEALFSW 608
Query: 612 YCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 609 ---DPTGTSQKTFISHLQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSDLSK 665
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
Q PWI TIRDN+LFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV
Sbjct: 666 GFGLATQEPWIQCATIRDNVLFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGV 725
Query: 729 NLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGGQ VY +Y+LDD L+AVDA VA +L I+G + TR+LCTH
Sbjct: 726 TLSGGQRARIALARAVYQEKTLYLLDDPLAAVDADVANHLLHRCILGV-LGHTTRLLCTH 784
Query: 789 NVQAISAADMVVVMDKGQVKWIGSSADL 816
+ + AD+V++M+ G++ G +++
Sbjct: 785 RTEYLERADLVLLMEAGRLVRAGPPSEI 812
|
|
| UNIPROTKB|Q5T3U5 ABCC10 "Multidrug resistance-associated protein 7" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1016 (362.7 bits), Expect = 3.4e-209, Sum P(3) = 3.4e-209
Identities = 248/680 (36%), Positives = 357/680 (52%)
Query: 195 DVEEDCNTDSSYW-DLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKLLSCW 252
D E + D W ++ + ++ RG +L +D+ LP + P+ + W
Sbjct: 208 DQEPEVAEDGESWLSRFSYAWLAPLLARGACGELRQPQDICRLPHRLQPTYLARVFQAHW 267
Query: 253 QAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHL 312
Q L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L
Sbjct: 268 QE-------GARLWRALYGAFGRCYLALGLLKLVGTMLGFSGPLLLSLLVGFLEEGQEPL 320
Query: 313 D-GYVLAIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSD 371
G + A+ L ++L + QY + ++ I+Y K L +L S
Sbjct: 321 SHGLLYALGLAGGAVLGAVLQNQYGYEVYKVTLQARGAVLNILYCKAL--QLGP-SRPPT 377
Query: 372 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVN 431
GE + D++R +N A SFH+AW LP Q+ + LYLLY QV AFV GL + +LL+PVN
Sbjct: 378 GEALNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGVAFVGGLILALLLVPVN 437
Query: 432 KWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLS 491
K IA I + ++M++ KD R++ E+L+ IR +K GWEQ + + R+ E+ L
Sbjct: 438 KVIATRIMASNQEMLQHKDARVKLVTELLSGIRVIKFCGWEQALGARVEACRARELGRLR 497
Query: 492 TRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWV 551
KYLDA CV+ WA P + S+ F + LMGHQL A VFT LAL LI PLN+FPWV
Sbjct: 498 VIKYLDAACVYLWAALPVVISIVIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWV 557
Query: 552 INGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 611
INGL++A +S+ R+ FL + + + + P+ S L + A SW
Sbjct: 558 INGLLEAKVSLDRIQLFLDLPNHNPQAYYSPDPPAEPSTVLE----------LHGALFSW 607
Query: 612 YCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
L + KG LV ++G+VG GKSSLL +I GE+ G + G
Sbjct: 608 ---DPVGTSLETFISHLEVKKGMLVGIVGKVGCGKSSLLAAIAGELHRLRGHVAVRGLSK 664
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV
Sbjct: 665 GFGLATQEPWIQFATIRDNILFGKTFDAQLYKEVLEACALNDDLSILPAGDQTEVGEKGV 724
Query: 729 NLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCT 787
LSGGQ VY ++Y+LDD L+AVDA VA +L I+G ML TR+LCT
Sbjct: 725 TLSGGQRARIALARAVYQEKELYLLDDPLAAVDADVANHLLHRCILG--MLSYTTRLLCT 782
Query: 788 HNVQAISAADMVVVMDKGQVKWIGSSADLA--VSLYSGFWSTN--EFD--TSLHMQKQEM 841
H + + AD V++M+ G++ G +++ V W+ N E D T+ +Q E
Sbjct: 783 HRTEYLERADAVLLMEAGRLIRAGPPSEILPLVQAVPKAWAENGQESDSATAQSVQNPE- 841
Query: 842 RTNASSANKQI----LLQEK 857
+T +Q LLQE+
Sbjct: 842 KTKEGLEEEQSTSGRLLQEE 861
|
|
| MGI|MGI:2386976 Abcc10 "ATP-binding cassette, sub-family C (CFTR/MRP), member 10" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 4.5e-209, Sum P(3) = 4.5e-209
Identities = 235/643 (36%), Positives = 343/643 (53%)
Query: 197 EEDCNTDSSYW-DLMAFKSIDSVMNRGVIKQLDF-EDLLGLPTDMDPSTCHSKLLSCWQA 254
E + D W ++ + ++ RGV +L D LP + P+ + W+
Sbjct: 211 ETEVAEDGESWLSRFSYAWLAPLLARGVRGELQQPRDTCRLPRRLHPAFLARVFQAHWKE 270
Query: 255 QRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD- 313
L RA+ A+G Y+ LGLLK+V +GF+GPLLL+ L+ FL++G L
Sbjct: 271 -------GAQLWRALYRAFGCCYLALGLLKMVGTMLGFSGPLLLSLLVGFLEEGQEPLSH 323
Query: 314 G--YVLAIALGLTSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSEFSD 371
G YVL +A G +++ + QY + +++ +Y+K L +L S
Sbjct: 324 GLLYVLGLAGG--TVISAVLQNQYGYEVRKVTLQARVAVLSTLYRKAL--KLGP-SRPPT 378
Query: 372 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVN 431
GE+ + D++R +N A SFH+AW LP Q+ + LYLLY QV AF++GL + +LL+PVN
Sbjct: 379 GEVLNLLGTDSERLLNFAGSFHEAWGLPLQLAITLYLLYQQVGMAFLAGLVLALLLVPVN 438
Query: 432 KWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLS 491
K IA I + ++M++ KD R++ E+L+ IR +K + WEQ + R+ E+ L
Sbjct: 439 KVIATRIMASNQEMLRHKDARVKLMTELLSGIRVIKFFRWEQALGDRVKACRTKELGRLR 498
Query: 492 TRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWV 551
KYLDA CV+ WA P + + F + LMGHQL A VFT LAL LI PLN+FPWV
Sbjct: 499 VIKYLDAACVYLWAALPVVICITIFITYVLMGHQLTATKVFTALALVRMLILPLNNFPWV 558
Query: 552 INGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 611
INGL+++ +S+ R+ RFL Y E + + P+ S L + +A SW
Sbjct: 559 INGLLESKVSLDRIQRFLDLPSYSPEAYYSPDPPAEPSTALE----------LHEALFSW 608
Query: 612 YCXXXXXXXXXXXXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASG 668
L + KG LV ++G+VG GKSSLL +I GE+ G + S
Sbjct: 609 ---DPIGASQKTFISHLQVKKGMLVGIVGKVGCGKSSLLAAITGELHRLCGWVAVSELSK 665
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
Q PWI TIRDNILFGK +D Q Y E L+AC L+ D+S++ GD +GEKGV
Sbjct: 666 GFGLATQEPWIQCATIRDNILFGKTFDAQLYREVLEACALNDDLSILPAGDQTEVGEKGV 725
Query: 729 NLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGGQ VY +Y+LDD L+AVDA VA +L I+G + TR+LCTH
Sbjct: 726 TLSGGQRARIALARAVYQEKALYLLDDPLAAVDADVANHLLHRCILGV-LSHTTRLLCTH 784
Query: 789 NVQAISAADMVVVMDKGQVKWIGSSADLA--VSLYSGFWSTNE 829
+ + AD+V++M+ GQ+ G +++ V W+ E
Sbjct: 785 RTEYLERADVVLLMEAGQLVRTGPPSEILPLVQAVPTAWAEKE 827
|
|
| FB|FBgn0032018 CG7806 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1806 (640.8 bits), Expect = 3.1e-186, P = 3.1e-186
Identities = 452/1284 (35%), Positives = 686/1284 (53%)
Query: 194 GDVEEDCNTDSSYWDLMAFKSIDSVMNRGVIKQL-DFEDLLGLPTDMDPSTCHSKL-LSC 251
G +++ N S + F + ++ +GV +L EDL LP ++ + KL L+
Sbjct: 224 GHAQDEANLGSRF----LFHWVQPLILKGVAGKLRKIEDLFDLPDALNITRLSEKLHLAL 279
Query: 252 WQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGH 311
Q+Q SL RA+ +G + +G+L+++ D GFAGPLLL L++ H
Sbjct: 280 SQSQ--------SLWRALHRCFGVEFYLIGILRLIADLSGFAGPLLLGGLLR-----QDH 326
Query: 312 LD-GYVLAIALGL--TSILKSFFDTQYSFHXXXXXXXXXXXIMTIIYQKCLYVRLAERSE 368
D V ALGL +++L + T + + ++ IY+K L R + S+
Sbjct: 327 ADPNQVYYYALGLFGSTLLSAVCATHFDWRMAMVSMKMRVGVVNSIYRKALEARGLKESK 386
Query: 369 FSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 428
++ MS DTDR VN SFH WS+PF++ LYLLY Q+ AF++G+ LLI
Sbjct: 387 ---PDLLNLMSTDTDRIVNSCISFHFFWSIPFKLFTTLYLLYLQLGAAFLAGVIFAALLI 443
Query: 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVK 488
P+N+W+A I + +M KD R+ T E + + +K+ WE IF + + R E++
Sbjct: 444 PINRWLAKRIGIFSSGLMTAKDARLSATTETMQGAKQIKINAWEDIFITKIRGLRQEELR 503
Query: 489 HLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSF 548
LS RKYLDA CV+FWATTP L L TFG+ LMG+ L A+ +T +AL LI PLN+F
Sbjct: 504 FLSKRKYLDAMCVYFWATTPVLMCLLTFGVSVLMGNPLIASTTYTSVALLYMLIGPLNAF 563
Query: 549 PWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDM--AVIMQD 606
PWV+NGLI+A++SI+R+ + + + +G + D A ++Q
Sbjct: 564 PWVLNGLIEAWVSIKRVQQLMDVPNLDYSSYYNPIMRGSGGSGAGDDAPLDAPKASVLQ- 622
Query: 607 ATCSWYCXXXXXXXXXX----XXXSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662
C+ +C ++ + G LV + G VG GKSS L++I+ + T G
Sbjct: 623 MKCASFCHDSDEQTSPTPFRMKDINVDIKAGQLVCIEGPVGGGKSSFLSAIVANLQCTDG 682
Query: 663 SI---HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
+ + YVPQ PW+ GTIRDNI++G +D Q Y L AC L+ D+ ++ GGD
Sbjct: 683 EVCVQELTTGFGYVPQSPWLQRGTIRDNIVWGAQFDEQWYKTVLHACALEEDLQIL-GGD 741
Query: 720 MAYIGEKGVNLSGGQXXXXXXXXXVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ +GE G LSGGQ VY +Y+LDDVLS++DA VAR I+ + I+ +L
Sbjct: 742 LVGVGENGRTLSGGQRARVALARAVYQDKKVYLLDDVLSSLDAHVARHIIKHCIL--RLL 799
Query: 780 Q-KTRILCTHNVQAISAADMVVVMDKGQV---KWIGSSADLAVSLYSGFWSTNEFDTSLH 835
+ KTRI+ T N+Q A+ ++ + GQ+ +++ S +L++ + D
Sbjct: 800 KHKTRIVVTRNIQLFFHANQILQVKDGQLLPSEYMTQSIELSLD--------EDADDE-- 849
Query: 836 MQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWF 895
Q+ +R + + Q +K + S+ ++E E R+ G + V+ Y K
Sbjct: 850 -QEPTVRRRSVELSNQY--DKKSLDSL------LLE-ELREYGHLSGNVFTCYWKAVTSP 899
Query: 896 ITLVICLSAILMQASRNGNDLWLSYWV----------DT---------TGSSQTK--YST 934
+ + LS +LMQ +RN +D WL+YWV DT T ++T+ ++T
Sbjct: 900 LAFTVLLSVVLMQLTRNLSDAWLAYWVTETTLDPHKNDTSLDHILMRPTVGNETESGHTT 959
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 994
FYL + + NS +TL RAF FA+ ++AA+ +H LL K++ A FFD T GRI
Sbjct: 960 KFYLSIFTAIAVSNSLVTLARAFLFAYAGIKAAIFMHEKLLKKVMFAKFNFFDITSVGRI 1019
Query: 995 LNRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFF 1054
LNRFSSD +DDSLPFILNILLA GL+G IY LQ
Sbjct: 1020 LNRFSSDTNTVDDSLPFILNILLAQLAGLVGALCVSLYAMPWLGLVIIPMVPIYLSLQQR 1079
Query: 1055 YRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSE 1114
YR SR+++RL S + SP+Y FTETL G +TIR+ ++ F F+ E
Sbjct: 1080 YRHASRDIKRLSSNAMSPLYTHFTETLQGLTTIRSMRASPRFQRDFQ--------VKLEE 1131
Query: 1115 XXXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPA-TFS---TPGLVGLALSYAAPIVS 1170
+ + T+ ++G G L A T S PGLVGL +SYA I
Sbjct: 1132 SIKAQLTQSAAQQWLALRLQLLGTL-LVGGAGLLAAITASHTTNPGLVGLCISYALSITG 1190
Query: 1171 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP-DWPFQGLIEFQNVTMRYK 1229
LG+ L + ETE+E+V++ER+ +Y+ + +E+ + P WP QG++ F+ V + Y+
Sbjct: 1191 QLGDLLHAVAETEQELVAVERIDQYLQLEEEQNASGSAEPPFGWPTQGVLSFREVQLSYR 1250
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289
L AL I F E ++GIVGRTGAGK+S+L AL R+ P+ G+I +D +N+ P+
Sbjct: 1251 EHLAPALRGITFQTEAFERIGIVGRTGAGKTSVLAALLRVAPLTHGEIRLDQVNLKTLPL 1310
Query: 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLETFV 1347
LR R V+ Q PFLFEG++R+NLDP H D +IW ++ + + GL+ V
Sbjct: 1311 SVLRERIGVITQEPFLFEGTVRENLDPRHGFYDSEIWHAIKNSAAATLLVQQLGGLDGKV 1370
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1407
+ G + S GQRQL+CLARALLK++KV+ +DE T+N+D ++ +Q A+ + K T++
Sbjct: 1371 ETCGNNLSAGQRQLLCLARALLKNAKVVAIDEGTSNLDDESDLSIQQALRNAFKSCTLLF 1430
Query: 1408 IAHRISTVLNMDEILILDHGHLVC 1431
IAHR+ + MD I++LD G +C
Sbjct: 1431 IAHRLRGLHAMDRIIVLDDGR-IC 1453
|
|
| FB|FBgn0032456 MRP "Multidrug-Resistance like Protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 2.5e-181, Sum P(3) = 2.5e-181
Identities = 220/569 (38%), Positives = 317/569 (55%)
Query: 868 EIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS 927
++IE E+ + G VE VYK+Y K G F+++ + + QA + G++LWL+ W +
Sbjct: 962 KLIETEKSQTGGVEFAVYKHYIKSVGIFLSVATLVLNFVFQAFQIGSNLWLTQWANDQNV 1021
Query: 928 SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL-FF 986
+ YL V F L G +AA +HN LL I+ V FF
Sbjct: 1022 ANDTGLRDMYLGVYGAFGFGQGVLAYFAVVIVYLGGFQAAKTIHNELLAVIIRGSVCRFF 1081
Query: 987 DQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXX 1046
D TP GR+LN FS D+ ++D+ LP ++ + +L
Sbjct: 1082 DITPIGRLLNSFSGDMDVVDEELPATMDSFMTFIFMVLATIVVISLSTPIFLAVIVPIAF 1141
Query: 1047 IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVL 1106
+Y Q FY +TSR+L RL+SVSRSPIY+ F+ET+ G+STIRA+ D F+ + V
Sbjct: 1142 LYYFAQRFYVATSRQLMRLESVSRSPIYSHFSETVTGASTIRAYNVGDRFIEESDAKVDK 1201
Query: 1107 YQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1166
Q Y II F + AV+G + N PGLVGL++SYA
Sbjct: 1202 NQVCKYPSVIANRWLAIRLEMVGNLIILFASLFAVLGGQTN-------PGLVGLSVSYAL 1254
Query: 1167 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE---ELCGYQSLSPDWPFQGLIEFQN 1223
+ L + ++ E +VS+ER+ EY + QE EL ++ +WP +G +EFQN
Sbjct: 1255 QVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQDKNKPKNWPQEGRVEFQN 1314
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283
+RY+ L L ++F I+GG +VGIVGRTGAGKSS+ ALFR+ GG+I +DG++
Sbjct: 1315 FQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGRISIDGVD 1374
Query: 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE--AV 1341
I + + LR R ++PQ P LF GSLR NLDPF + D +IW LE H+K V+ A
Sbjct: 1375 IASMGLHMLRSRLTIIPQDPVLFSGSLRINLDPFEIKTDDEIWKALELSHLKSFVKSLAA 1434
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
GL + E G + SVGQRQL+CLARALL+ +KVL LDE TA VD +T ++Q I +E K
Sbjct: 1435 GLNHEIAEGGENLSVGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFK 1494
Query: 1402 GMTVITIAHRISTVLNMDEILILDHGHLV 1430
TV+TIAHR++T+L+ D++++LD G ++
Sbjct: 1495 ECTVLTIAHRLNTILDSDKVIVLDKGQII 1523
|
|
| UNIPROTKB|F1RRK8 LOC100736948 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1014 (362.0 bits), Expect = 7.3e-181, Sum P(4) = 7.3e-181
Identities = 217/500 (43%), Positives = 305/500 (61%)
Query: 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
FYL V NSF TL+RA FA G+LRAA +H LL +++ APV FFD TP GR+L
Sbjct: 952 FYLTVYATIAGVNSFCTLLRAVLFAAGTLRAAATLHRRLLCRVLMAPVTFFDSTPTGRVL 1011
Query: 996 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAXXXXXXXXXXXXXXXXXXXIYSKLQFFY 1055
NRFSSD+ DDSLPFILNILLAN GLLG+ IY ++Q Y
Sbjct: 1012 NRFSSDVACADDSLPFILNILLANTAGLLGLLVVLGSGLPWLLLLLPPLSAIYYRVQRHY 1071
Query: 1056 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEX 1115
R++SRELRRL S++ SP+Y +TL G +RA + F + + + L QR ++
Sbjct: 1072 RASSRELRRLGSLTLSPLYTHLADTLAGLPVLRAAGATYRFEEENQRLLELNQRCQFASS 1131
Query: 1116 XXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNF 1175
++S IA +A++ + L + PGLVGL+LSYA + LL
Sbjct: 1132 ATMQWLDIRLQLMGATVVSAIAGIALVQHQQGL----ANPGLVGLSLSYALSLTGLLSGL 1187
Query: 1176 LSSFTETEKEMVSLERVLEYM-DVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKP 1230
+SSFT+TE +VS+ER+ EY D+PQE G L W QG +EFQ+V + Y+P
Sbjct: 1188 VSSFTQTETMLVSVERLEEYSCDLPQEPRGQWPQGPHQLGISWLSQGSVEFQDVVLVYRP 1247
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
LP AL + F ++ G ++GIVGRTG+GKSS+L LFRL G++L+DG++ +
Sbjct: 1248 GLPNALDGVTFRVQPGEKLGIVGRTGSGKSSLLLVLFRLLEPSSGRVLLDGVDTSQLELA 1307
Query: 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-LETFVKE 1349
+LR + A++PQ PFLF G++R+NLDP + +D +W LE+CH+ + ++G L+ + E
Sbjct: 1308 ELRSQLAIIPQEPFLFSGTVRENLDPRGLYEDRALWQALEQCHLSGVLRSMGGLDAELGE 1367
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1409
G S S+GQRQL+CLARALL +K+LC+DE TA+VD +T +LQ I TV+TIA
Sbjct: 1368 GGRSLSLGQRQLLCLARALLTDAKILCIDEATASVDQKTDQLLQQTICQRFANKTVLTIA 1427
Query: 1410 HRISTVLNMDEILILDHGHL 1429
HR++T+LN D +L+L G +
Sbjct: 1428 HRLNTILNSDRVLVLQAGRV 1447
|
|
| UNIPROTKB|F1RTA1 ABCC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 956 (341.6 bits), Expect = 1.6e-178, Sum P(2) = 1.6e-178
Identities = 221/579 (38%), Positives = 325/579 (56%)
Query: 856 EKDVVSVSDDAQEIIEVEQRKE-GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGN 914
EK V ++ E++ E G V+++VY +YAK G TL ICL A+ G
Sbjct: 939 EKVVQEAEAKPSRVLTQEEKAETGTVKMSVYWDYAKAVGLCTTLFICLLYGGQSAAAIGA 998
Query: 915 DLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 974
++WLS W D + + +TS L V + L ++ A + A G ++AA +H L
Sbjct: 999 NVWLSAWTDEAAMNGQQNNTSHRLGVYAALGLLQGLLVMLSAVTMAVGGVQAARLLHQAL 1058
Query: 975 LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSL-PFILNILLANFVGLLGIAXXXXXX 1033
L + +P FFD TP GRILNRFS D+Y+ID+ L P IL +LL +F +
Sbjct: 1059 LHNKMRSPQSFFDTTPSGRILNRFSKDIYVIDEVLAPTIL-MLLNSFYNSISTLVVIVAS 1117
Query: 1034 XXXXXXXXXXXXXIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAF-KS 1092
+Y +Q FY +TSR+L+RL+SVSRSPIY+ F+ET+ GSS IRA+ +S
Sbjct: 1118 TPVFAVVVVPLAVLYLFVQRFYVATSRQLKRLESVSRSPIYSHFSETVTGSSVIRAYGRS 1177
Query: 1093 EDYFMAKFKEHVVLYQRTSYSEXXXXXXXXXXXXXXXXFIISFIATMAVIGSRGNLPATF 1152
+D F A V Q++ Y ++ F A AV G R +L
Sbjct: 1178 QD-FEAINNVKVDTNQKSCYPYIASNRWLGIRVEFVGNCVVLFAAVFAVTG-RNSL---- 1231
Query: 1153 STPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1212
+PGLVGL++SYA + L + + ++ E +V++ERV EY E + P
Sbjct: 1232 -SPGLVGLSVSYALQVTLALNWMIRTISDLESNIVAVERVKEYSKTETEAPWVVEGNRPP 1290
Query: 1213 --WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
WP +G +EF+N ++RY+P L L +++ + GG +VGIVGRTGAGKSS+ LFR+
Sbjct: 1291 AGWPPRGEVEFRNYSVRYRPGLELVLKNLSLQVHGGEKVGIVGRTGAGKSSMTLCLFRIL 1350
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+I +DGLN+ + + DLR + ++PQ P LF G+LR NLDPF + +W LE
Sbjct: 1351 EAAEGEIRIDGLNVADIGLHDLRSQLTIIPQEPILFSGTLRMNLDPFGTYSEEDMWRALE 1410
Query: 1331 KCHVKEEVEA--VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
H+ V + GLE E G + SVGQRQL+CLARALL+ S++L LDE TA +D +T
Sbjct: 1411 LSHLHSFVSSQPAGLEFQCSEGGENLSVGQRQLVCLARALLRKSRILVLDEATAAIDLET 1470
Query: 1389 ASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1427
++Q I ++ + TV+TIAHR++T+++ +L+LD G
Sbjct: 1471 DDLIQATIRTQFEACTVLTIAHRLNTIMDYTRVLVLDKG 1509
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5T3U5 | MRP7_HUMAN | No assigned EC number | 0.3922 | 0.8374 | 0.8116 | yes | no |
| Q9SKX0 | AB13C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6488 | 0.9405 | 0.9645 | yes | no |
| Q8R4P9 | MRP7_MOUSE | No assigned EC number | 0.3779 | 0.8644 | 0.8327 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3.44 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | ATMRP11 | ATMRP11; ATPase, coupled to transmembrane movement of substances; member of MRP subfamily ; Pump for glutathione S-conjugates (By similarity) (1251 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | AT4G08455 | BTB/POZ domain-containing protein; BTB/POZ domain-containing protein; FUNCTIONS IN- protein bin [...] (243 aa) | • | 0.821 | |||||||
 | CYP705A32 | CYP705A32; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding; m [...] (526 aa) | • | 0.786 | |||||||
 | AT1G12570 | glucose-methanol-choline (GMC) oxidoreductase family protein; glucose-methanol-choline (GMC) ox [...] (572 aa) | • | 0.716 | |||||||
 | HAG2 | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2); H4 histone acetyltransferase/ histone ac [...] (467 aa) | • | 0.677 | |||||||
 | AT1G77540 | H3/H4 histone acetyltransferase; Encodes a H3/H4 histone acetyltransferase. Belongs to the GNAT [...] (114 aa) | • | 0.655 | |||||||
 | AT2G20270 | glutaredoxin family protein; glutaredoxin family protein; FUNCTIONS IN- electron carrier activi [...] (179 aa) | • | 0.599 | |||||||
 | ABC1At | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa) | • | 0.597 | |||||||
 | EIF3K | EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K); translation initiation factor; Encodes ini [...] (226 aa) | • | 0.510 | |||||||
 | PDR13 | PDR13; ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding; PDR13; FUNCTIONS IN [...] (1390 aa) | • | • | 0.451 | ||||||
 | AT5G44410 | FAD-binding domain-containing protein; FAD-binding domain-containing protein; FUNCTIONS IN- ele [...] (535 aa) | • | 0.435 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1446 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-171 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-102 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-101 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-88 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-70 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-70 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-70 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-68 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-63 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-61 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-59 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-57 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-56 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-54 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-54 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 9e-53 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-52 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-51 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-50 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-50 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-50 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-48 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-47 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-47 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-47 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-46 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-46 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 7e-46 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-44 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-42 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-42 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-41 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-40 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-40 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-40 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-39 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-39 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-38 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-36 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-36 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-36 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-35 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 9e-34 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-33 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-32 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-32 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-32 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-32 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-32 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-32 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 6e-32 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-31 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-31 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-30 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-30 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-29 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-28 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-28 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 4e-28 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-28 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-28 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-28 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-27 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-27 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-26 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-26 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-26 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-26 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-25 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-25 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-25 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-24 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-24 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-24 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-24 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-24 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-24 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-24 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 7e-24 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-23 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-23 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-23 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-23 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-23 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-23 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-22 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-22 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-22 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 7e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-21 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-21 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-21 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-21 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-21 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-21 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-21 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-21 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-21 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-21 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-20 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-20 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-20 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-20 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-20 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-20 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-20 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-19 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-19 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-19 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-18 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-18 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-18 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-18 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-18 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-18 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 6e-18 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-18 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-18 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-18 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-18 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-18 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-17 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-17 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-17 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-17 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-17 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-17 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-17 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-17 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-16 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-16 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-16 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-16 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-16 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-16 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 9e-16 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-15 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-15 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-15 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-15 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-15 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-15 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-15 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-15 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-15 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-15 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-15 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-15 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 5e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-15 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-15 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-15 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-15 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-14 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-14 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-14 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-14 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 4e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-14 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-14 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-14 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-14 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 5e-14 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 5e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-14 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 5e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-14 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-14 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-13 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-13 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-13 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 4e-13 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 5e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-13 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-13 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 9e-13 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-12 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-12 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-12 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-12 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-12 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-12 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 4e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-12 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-12 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-12 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-12 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 9e-12 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-11 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-11 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-11 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-11 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-11 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-11 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-11 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-11 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-11 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 9e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-10 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-10 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-10 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 3e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-10 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 4e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-10 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-10 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 6e-10 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-10 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 6e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 7e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 8e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 8e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 9e-10 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-09 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-09 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-09 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-09 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-09 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-09 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-09 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-09 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 6e-09 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-09 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-09 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-08 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-08 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-08 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-08 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-08 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 3e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-08 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-08 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-08 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 9e-08 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-08 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-07 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-07 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-07 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-07 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-07 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-07 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 2e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 5e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-06 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-06 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 8e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-05 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-05 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-05 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 9e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-04 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-04 | |
| cd11383 | 140 | cd11383, YfjP, YfjP GTPase | 5e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 5e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 5e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-04 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 8e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-04 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 9e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.001 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.001 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.001 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 0.001 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| cd09912 | 180 | cd09912, DLP_2, Dynamin-like protein including dyn | 0.001 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 0.002 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.002 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 0.003 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 0.003 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.003 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.004 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 0.004 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 799 bits (2066), Expect = 0.0
Identities = 426/1214 (35%), Positives = 668/1214 (55%), Gaps = 70/1214 (5%)
Query: 262 NPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIA 320
PSL + + +G ++ K ++D + F GP +L+ LI+F+ GY
Sbjct: 304 KPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGL 363
Query: 321 LGLTSILKSFFDTQYSFHLSKLK-LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMS 379
L + + L++ QY FH+ + +++++++M +Y+K L + + R + GEI MS
Sbjct: 364 LFVCACLQTLILHQY-FHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMS 422
Query: 380 VDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIA 439
VD R ++LA + WS P Q+ +ALY L+ + + ++G+A+ +L++P+N +A
Sbjct: 423 VDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTK 482
Query: 440 NATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499
MK KD RI+ EIL I+ LK+Y WE F + R E+K L YL A
Sbjct: 483 TYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542
Query: 500 CVFFWATTPTLFSLFTFGLFALMGHQ--LDAAMVFTCLALFNSLISPLNSFPWVINGLID 557
F W TP L +L TF ++ + LDA F LALFN L PLN P VI+ ++
Sbjct: 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQ 602
Query: 558 AFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEE 617
A +S++RL FL ELE + I G N ++ + +AT +W
Sbjct: 603 ASVSLKRLRIFLS----HEELEPDSIERRTIKPGEGN------SITVHNATFTW----AR 648
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
+ LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM G +H GS+AYVPQ
Sbjct: 649 DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQA 708
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
WI + ++R+NILFGK + + Y + L+AC L D+ ++ GD IGEKGVNLSGGQ+ R
Sbjct: 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR 768
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAISAA 796
++LARAVY +DIY+ DD LSAVDA V + I + I +L+ KTRIL TH + +
Sbjct: 769 VSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV 828
Query: 797 DMVVVMDKGQVKWIGSSADLAV--SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILL 854
D+++VM G++ +GS +L ++ F T D + S K+ L
Sbjct: 829 DVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKL 888
Query: 855 QEKDVVSVSDDAQE-------------------------------------IIEVEQRKE 877
E + + V+D + ++E ++ +
Sbjct: 889 IE-NGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQT 947
Query: 878 GRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFY 937
G+VEL+VY +Y K G FIT + + S ++ WLS W D + T+ +TS
Sbjct: 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR 1007
Query: 938 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 997
L V + F + + + G ++A+ +H LL + +P+ FF++TP G ++NR
Sbjct: 1008 LSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNR 1067
Query: 998 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057
FS +L +D +P ++ + + + ++G +V+ +++ P +Y +Q FY +
Sbjct: 1068 FSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVA 1127
Query: 1058 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1117
+SR+L+RL+SVSRSP+Y+ F ETL G S IRAF+ ++ F+ + V Q+ Y + A
Sbjct: 1128 SSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187
Query: 1118 SLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLS 1177
+ WL++RL+ + I+ F A AVI R +L + GLVGL++SY+ + L +
Sbjct: 1188 NRWLAVRLECVGNCIVLFAALFAVIS-RHSL-----SAGLVGLSVSYSLQVTFYLNWLVR 1241
Query: 1178 SFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--DWPFQGLIEFQNVTMRYKPSLPAA 1235
+E E +V++ER+ EY + +E Q +P WP +G +EF+N +RY+ L
Sbjct: 1242 MSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLV 1301
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L IN TI GG +VGIVGRTGAGKSS+ LFR+ G+I++DGLNI + DLR +
Sbjct: 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFK 1361
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1353
++PQ P LF GSLR NLDPF D ++W LE H+K V A+ L+ E G +
Sbjct: 1362 ITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
SVGQRQL+CLARALL+ +K+L LDE TA VD +T +++Q+ I ++ + TV+TIAHR++
Sbjct: 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLN 1481
Query: 1414 TVLNMDEILILDHG 1427
T+++ +++LD G
Sbjct: 1482 TIMDYTRVIVLDKG 1495
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 776 bits (2006), Expect = 0.0
Identities = 423/1236 (34%), Positives = 684/1236 (55%), Gaps = 41/1236 (3%)
Query: 212 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICC 271
F + +M G + L +D+ L T T + CW + P L+RA+
Sbjct: 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELKK--PKPWLLRALNN 297
Query: 272 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFF 331
+ G + G K+ ND F GPLLLN L++ +Q G GY+ A ++ + +L
Sbjct: 298 SLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLC 357
Query: 332 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 391
+ QY ++ ++ +LRS+++ +++K L + R +F+ G+I M+ D + +
Sbjct: 358 EAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ 417
Query: 392 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 451
H WS PF+I +A+ LLY Q+ A + G + +L+ P+ +I + + T++ +++ D+
Sbjct: 418 LHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477
Query: 452 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLF 511
RI E+L + T+K Y WE F S + R E+ + L A+ F + P L
Sbjct: 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLV 537
Query: 512 SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 571
++ +FG+F L+G L A FT L+LF L PL P +I ++A +S++RL L
Sbjct: 538 TVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELL-- 595
Query: 572 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 631
E N P + GL A+ +++ SW E L+ ++L +P
Sbjct: 596 --LAEERVLLPNPP--LEPGLP-------AISIKNGYFSWDSKAERP---TLSNINLDVP 641
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 690
GSLVA++G G GK+SL++++LGE+ + S+ G++AYVPQV WI + T+RDNILF
Sbjct: 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701
Query: 691 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 750
G +DP+ Y + L D+ L+ GGD+ IGE+GVN+SGGQ+ R+++ARAVY SD+
Sbjct: 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761
Query: 751 YMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWI 810
Y+ DD LSA+DA V R + I + KTR+L T+ + +S D ++++ +G +K
Sbjct: 762 YIFDDPLSALDAHVGRQVFDKCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820
Query: 811 GSSADLAVS------LYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVS--- 861
G+ +L+ + L E+ ++ + ++ AN +KD S
Sbjct: 821 GTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKK 880
Query: 862 VSDDAQEIIEVEQRKEGRVELTVYKNY-AKFSGWFITLVICLSAILMQASRNGNDLWLSY 920
+ +I+ E+R+ G V V + Y G ++ +++ L +L + R + WLS
Sbjct: 881 SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940
Query: 921 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980
W D + FY ++ + +TL+ ++ SL AA ++H+ +L I+
Sbjct: 941 WTDQGTPKT--HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILR 998
Query: 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLL 1040
AP+ FF P GRI+NRF+ DL ID ++ +N+ L LL V++ V L
Sbjct: 999 APMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWA 1058
Query: 1041 LVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKF 1100
++P ++ +Y+ST+RE++RLDS++RSP+YA F E LNG STIRA+K+ D MA+
Sbjct: 1059 IMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR-MAEI 1117
Query: 1101 KEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLV 1158
+ R + ++++ WL++RL+ L +I A+ AV+ R A F++ +
Sbjct: 1118 NGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFAS--TM 1175
Query: 1159 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQS--LSPDWPFQ 1216
GL LSYA I SLL L + E + ++ERV Y+D+P E ++ P WP
Sbjct: 1176 GLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSS 1235
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G I+F++V +RY+P LP LH ++F I +VGIVGRTGAGKSS+LNALFR+ + G+
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
IL+DG +I + DLR ++PQ+P LF G++R NLDPF+ ++D +W LE+ H+K+
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKD 1355
Query: 1337 EVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+ ++GL+ V E+G +FSVGQRQL+ LARALL+ SK+L LDE TA VD +T +++Q
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
I E K T++ IAHR++T+++ D IL+LD G +V
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVV 1451
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 725 bits (1872), Expect = 0.0
Identities = 422/1240 (34%), Positives = 695/1240 (56%), Gaps = 52/1240 (4%)
Query: 212 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCW--QAQRSCNCTNPSLVRAI 269
F + +M G K + +D+ L T + CW +++R P L+RA+
Sbjct: 240 FSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESRRP----KPWLLRAL 295
Query: 270 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKS 329
+ G + G+ K+ +D F GP++L+ L++ +Q+G GYV A +
Sbjct: 296 NNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGV 355
Query: 330 FFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA 389
++QY ++ ++ +LRS+++ I+ K L + R F+ G++ ++ D + +A
Sbjct: 356 LCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA 415
Query: 390 NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQK 449
H WS PF+I V++ LLY Q+ A + G I LLIP+ I + T++ ++
Sbjct: 416 EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWT 475
Query: 450 DERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 509
D+R+ EIL + T+K Y WE+ F S + R+ E+ + L A+ F + P
Sbjct: 476 DKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPV 535
Query: 510 LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 569
+ +L +FG+F L+G L A FT L+LF L SPLN P +++ +++A +S++R+ L
Sbjct: 536 VVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELL 595
Query: 570 GCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLC 629
E A N P + G A+ +++ SW + + L+ ++L
Sbjct: 596 ----LSEERILAQNPP--LQPGAP-------AISIKNGYFSW---DSKTSKPTLSDINLE 639
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGSIAYVPQVPWILSGTIRD 686
+P GSLVA++G G GK+SL++++LGE L+H S+ GS+AYVPQV WI + T+R+
Sbjct: 640 IPVGSLVAIVGGTGEGKTSLISAMLGE--LSHAETSSVVIRGSVAYVPQVSWIFNATVRE 697
Query: 687 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746
NILFG +++ + Y + L D+ L+ G D+ IGE+GVN+SGGQ+ R+++ARAVY
Sbjct: 698 NILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS 757
Query: 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806
SDIY+ DD LSA+DA VA + ++ M + KTR+L T+ + + D ++++ +G
Sbjct: 758 NSDIYIFDDPLSALDAHVAHQVF-DSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGM 816
Query: 807 VKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ-KQEMRTNASSANK-----QILLQEKDVV 860
+K G+ A+L+ SG + + M QE+ TN + K I + E+++
Sbjct: 817 IKEEGTFAELS---KSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLG 873
Query: 861 SVSDDAQE---IIEVEQRKEGRVELTVYKNYAK-FSGWFITLVICLSAILMQASRNGNDL 916
S + +++ E+R+ G + V Y K G ++ +++ + + + R +
Sbjct: 874 STKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSST 933
Query: 917 WLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLT 976
WLS W D S+ YS FY+VV + +T +F SL AA ++H+ +L
Sbjct: 934 WLSIWTDQ--STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLN 991
Query: 977 KIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVF 1036
I+ AP+LFF P GR++NRFS D+ ID ++ ++N+ + LL ++ V
Sbjct: 992 SILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTI 1051
Query: 1037 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYF 1096
L ++P ++ +Y+STSRE+RRLDSV+RSPIYA F E LNG S+IRA+K+ D
Sbjct: 1052 SLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR- 1110
Query: 1097 MAKFKEHVVLYQ-RTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-RGNLPATFST 1154
MAK + R + + +++ WL++RL+ L +I AT AV+ + A F++
Sbjct: 1111 MAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFAS 1170
Query: 1155 PGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP--D 1212
+GL LSY I +LL L ++ E + S+ERV Y+D+P E ++ P
Sbjct: 1171 --TMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSG 1228
Query: 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
WP +G I+F++V +RY+P LP LH ++F + +VG+VGRTGAGKSS+LNALFR+ +
Sbjct: 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL 1288
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G+I++D ++ + DLR +++PQSP LF G++R N+DPF ++D +W LE+
Sbjct: 1289 EKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERA 1348
Query: 1333 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
H+K+ ++ GL+ V E G +FSVGQRQL+ LARALL+ SK+L LDE TA+VD +T S
Sbjct: 1349 HIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408
Query: 1391 ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
++Q I E K T++ IAHR++T+++ D+IL+L G ++
Sbjct: 1409 LIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVL 1448
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 554 bits (1430), Expect = e-171
Identities = 304/863 (35%), Positives = 462/863 (53%), Gaps = 62/863 (7%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ 675
E E V+L VS+ +P+G L V+G GSGKS+LL S+L + ++ G + A SIAYVPQ
Sbjct: 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQ 728
Query: 676 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735
WI++ T+R NILF D ++ ++ L+ D++ + GG IGEKGVNLSGGQ+
Sbjct: 729 QAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 795
AR++LARAVY D+Y+LDD LSA+DA V ++ +G + KTR+L TH V +
Sbjct: 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPR 847
Query: 796 ADMVVVMDKGQVKWIGSSADLA-VSLYSGFW-------------STNEFDTSLHMQKQEM 841
AD VV + G+V++ GSSAD SLY+ + E +
Sbjct: 848 ADYVVALGDGRVEFSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAV 907
Query: 842 RTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG----WFIT 897
A ++ + D ++ A ++ E++ G V + Y Y +F G
Sbjct: 908 DHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFV 967
Query: 898 LVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAF 957
L L+ S + +WLS W +T S K S + YL V + + ++ F
Sbjct: 968 LATFAVTELVTVS---SGVWLSMW--STRS--FKLSAATYLYVY-LGIVLLGTFSVPLRF 1019
Query: 958 SFAFGSLR-AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1016
++ ++R + +H LL + + FFD TP GRILNRFS D+ ++D++LP L
Sbjct: 1020 FLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYL 1079
Query: 1017 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1076
L + +V S Q F L+ LVP ++Y +L FY S +RE+RR+ SV++SP++
Sbjct: 1080 LQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTL 1139
Query: 1077 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFI 1136
E L GS+TI A+ M + + + SY E A+ WL +R++ L+ +++ I
Sbjct: 1140 LEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVI 1199
Query: 1137 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196
A + VIG+ L AT GLV L+L+ A + L + E +M S+ER+L Y
Sbjct: 1200 ALIGVIGTM--LRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYT 1257
Query: 1197 D-VPQEEL--------------------CGYQSLSPDWPFQ--------GLIEFQNVTMR 1227
D VP E++ G + P P G + F+ V MR
Sbjct: 1258 DEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317
Query: 1228 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1287
Y+ LP L ++F I +VGIVGRTG+GKS++L R+ +CGG+I V+G I
Sbjct: 1318 YREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAY 1377
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV--EAVGLET 1345
+R+LR +F+++PQ P LF+G++R N+DPF ++W+ LE ++E V E+ G+++
Sbjct: 1378 GLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDS 1437
Query: 1346 FVKESGISFSVGQRQLICLARALLK-SSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
V E G ++SVGQRQL+C+ARALLK S + +DE TAN+D +Q + S T
Sbjct: 1438 RVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYT 1497
Query: 1405 VITIAHRISTVLNMDEILILDHG 1427
VITIAHR+ TV D+I+++DHG
Sbjct: 1498 VITIAHRLHTVAQYDKIIVMDHG 1520
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 324 bits (833), Expect = e-102
Identities = 107/205 (52%), Positives = 149/205 (72%), Gaps = 1/205 (0%)
Query: 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 661
+ ++DA+ +W + E+E + L ++L +PKG LVA++G VGSGKSSLL+++LGE+
Sbjct: 1 ISVEDASFTW-DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS 59
Query: 662 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
GS+ GSIAYV Q PWI +GTIR+NILFGK +D + Y + +KAC L+ D+ ++ GD+
Sbjct: 60 GSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLT 119
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
IGEKG+NLSGGQ+ R++LARAVY +DIY+LDD LSAVDA V R I N I+G + K
Sbjct: 120 EIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNK 179
Query: 782 TRILCTHNVQAISAADMVVVMDKGQ 806
TRIL TH +Q + AD +VV+D G+
Sbjct: 180 TRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 321 bits (826), Expect = e-101
Identities = 113/216 (52%), Positives = 159/216 (73%), Gaps = 2/216 (0%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV++RY+P+LP L +I+F+I+ G +VGIVGRTG+GKSS+L ALFRL + G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
IL+DG++I + DLR R +++PQ P LF G++R NLDPF D ++W LE+ +KE
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1337 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
VE++ GL+T V+E G + SVGQRQL+CLARALL+ SK+L LDE TA+VD +T +++Q
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
I K TV+TIAHR+ T+++ D IL+LD G +V
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 3e-88
Identities = 136/500 (27%), Positives = 252/500 (50%), Gaps = 17/500 (3%)
Query: 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 996
L++L + + L ++++ + + + L K++ P+ FFD+ G +++
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 997 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQF 1053
R ++D+ + + + +L ++ + + L+G V+L + LLL++P + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL---VLS 170
Query: 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYS 1113
SR+L R + + A E+L+G I+AF +ED + +F+E +R +
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 1114 ELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLG 1173
L+ + LL++ + + T G + + Y +++ +
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSL----TVGALAAFILYLLRLLTPIL 286
Query: 1174 NFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP 1233
+ ++ + ER+ E +D E P G IEF+NV+ Y P
Sbjct: 287 QLGEVVSLLQRASAAAERLFELLDEEPEVE---DPPDPLKDTIGSIEFENVSFSYPGKKP 343
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
L DI+F+IE G +V IVG +G+GKS+++ L RL G+IL+DG++I + + LR
Sbjct: 344 V-LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402
Query: 1294 GRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKES 1350
R +V Q P LF G++R+N+ + D +I L+ + E + + G +T V E
Sbjct: 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGER 462
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH 1410
G++ S GQRQ + +ARALL++ +L LDE T+ +D +T +++Q+A+ KG T + IAH
Sbjct: 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
Query: 1411 RISTVLNMDEILILDHGHLV 1430
R+ST+ N D I++LD+G +V
Sbjct: 523 RLSTIKNADRIIVLDNGRIV 542
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 1e-70
Identities = 149/517 (28%), Positives = 249/517 (48%), Gaps = 32/517 (6%)
Query: 929 QTKYSTSFYLV-VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFD 987
ST L L + +F + L L+R + A R +++ ++ P+ +F+
Sbjct: 187 DASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246
Query: 988 QTPGGRILNRFSSDLYMIDDSLP-FILNILLANFVGLLGIAVVLSY-------VQVFFLL 1039
+ G I++R +L I + L IL +++ L+ +AV+ Y V L
Sbjct: 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPL 305
Query: 1040 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099
++ Q R +R+L + + ET+ G T++A +E F ++
Sbjct: 306 NVLITLIF----QPLLRRKTRKLIEESAE----QQSFLVETIKGIETVKALAAEPRFRSQ 357
Query: 1100 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV- 1158
+ + + +L L+ LL +S + + G+ L + LV
Sbjct: 358 WDNRLAKQVNIGFKTEKLALILNTIKSLL--QQLSSVLIL-WFGAILVLEGELTLGQLVA 414
Query: 1159 --GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216
LA + +PI L + F + + V+LER+ + +D P E+ G ++L Q
Sbjct: 415 FNMLAGYFISPITRLS-QLWTDFQQAK---VALERLGDILDTPPEQ-EGDKTLIHLPKLQ 469
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV+ RY P P L D++ I G +V IVGR+G+GKS++L L L G+
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVK 1335
IL+DG+++ + + LR + V Q PFLF GS+R+N+ + + I +
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
E +E + G +T V E G + S GQRQ + LARALL K+L LDE T+ +D +T +I+
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ +G TVI IAHR+ST+ + D I++LD G +V
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV 686
|
Length = 709 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 2e-70
Identities = 94/218 (43%), Positives = 138/218 (63%), Gaps = 16/218 (7%)
Query: 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
WP G IE +N+++RY P LP L +++F ++ G ++GIVGRTGAGKS+++ ALFR
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G+I +DG++I P+ DLR ++PQ P LF G++R NLDPF D +I+ L
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR-- 118
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
V E G++ S GQRQL+CLARALLK +VL LDE TA++D T +++
Sbjct: 119 --------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI 164
Query: 1393 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
Q I E T++TIAHR+ T+++ D+IL++D G +
Sbjct: 165 QKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVK 202
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 259 bits (662), Expect = 5e-70
Identities = 160/514 (31%), Positives = 272/514 (52%), Gaps = 30/514 (5%)
Query: 933 STSFYLVVLCIFCMFNSFLTL--VRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTP 990
TS Y + +S L L R L + ++H +L ++ AP+ +
Sbjct: 921 PTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMK 980
Query: 991 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1050
GRILNRF+ D+ +IDD LP L + + +LG V+S +Q + + +P I+
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 1051 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRT 1110
L+ ++ TS++L++L+S +RSPI++ +L G TIRAF + YF F + + L+
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTAN 1100
Query: 1111 SYSELTASLWLSLRLQLLAAFIISFIA-TMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169
+ L+ W +R+ ++ F+ FIA T IG+ + G VG+ L+ A I+
Sbjct: 1101 WFLYLSTLRWFQMRIDII--FVFFFIAVTFIAIGTNQD------GEGEVGIILTLAMNIL 1152
Query: 1170 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE----------------LCGYQSLSPDW 1213
S L ++S + + M S+ RV +++D+PQEE + W
Sbjct: 1153 STLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCW 1212
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P G ++ Q +T +Y + A L D++F++EGG +VG++GRTG+GKS++L+AL RL
Sbjct: 1213 PSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLST- 1271
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
G+I +DG++ + ++ R F V+PQ F+F G+ R NLDP+ D +IW V E+
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVG 1331
Query: 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
+K +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T I
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILD 1425
++ + TVI HR+ +L + L+++
Sbjct: 1392 IRKTLKQSFSNCTVILSEHRVEALLECQQFLVIE 1425
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 252 bits (645), Expect = 6e-68
Identities = 185/667 (27%), Positives = 310/667 (46%), Gaps = 87/667 (13%)
Query: 198 EDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRS 257
E N S + F ++ +G ++L+ D+ +P+ +L W + +
Sbjct: 7 EKANFLSKLF----FWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA 62
Query: 258 CNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD---- 313
NP L+ A+ + + ++ G+L ++ PLLL ++I S
Sbjct: 63 SAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRII-----ASYDPFNAPE 117
Query: 314 ---GYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAER--SE 368
Y LA+ L L I+++ F L L +++R ++ ++IY+K L +L+ R +
Sbjct: 118 REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL--KLSSRVLDK 175
Query: 369 FSDGEIQTFMSVDT---DRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425
S G++ + +S + D + LA H W P Q+ + + L++ ++ GL I
Sbjct: 176 ISTGQLVSLLSNNLNKFDEGLALA---HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLI 232
Query: 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSS 485
LL + + +K + ER+ T EI+ +I+++K Y WE+ + R
Sbjct: 233 LLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQD 292
Query: 486 EVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAM----VFT----CLAL 537
E+K TRK A+ +F+++ FS F +++ + L + +FT C+ L
Sbjct: 293 ELK--LTRKI--AYLRYFYSSA-FFFSGFFVVFLSVVPYALIKGIILRRIFTTISYCIVL 347
Query: 538 FNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNS 597
++ FP I D+ +I ++ FL EYK LE +N
Sbjct: 348 RMTVT---RQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLE---------------YNL 388
Query: 598 KDMAVIMQDATCSW------------YCNNEEEQ----------------NVVLNQVSLC 629
V M + T SW N +Q VL +S
Sbjct: 389 TTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFK 448
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 689
L KG L+AV G GSGKSSLL I+GE+ + G I SG I++ PQ WI+ GTI+DNI+
Sbjct: 449 LEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNII 508
Query: 690 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 749
FG +YD Y+ +KAC L+ DI+L D +GE G+ LSGGQRAR++LARAVY +D
Sbjct: 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDAD 568
Query: 750 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 809
+Y+LD + +D + I + + M KTRIL T ++ + AD ++++ +G +
Sbjct: 569 LYLLDSPFTHLDVVTEKEIFESCLC-KLMSNKTRILVTSKLEHLKKADKILLLHEGVCYF 627
Query: 810 IGSSADL 816
G+ ++L
Sbjct: 628 YGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 211 bits (541), Expect = 4e-63
Identities = 76/210 (36%), Positives = 113/210 (53%), Gaps = 39/210 (18%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+NV+ Y L D++ TI+ G +V IVG +G+GKS++L L RL G+IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG+++ + + LR A VPQ PFLF G++R+N+
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI------------------------ 96
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
S GQRQ I +ARALL+ +L LDE T+ +D +T +++ A+ +
Sbjct: 97 ---------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1399 ECKGMTVITIAHRISTVLNMDEILILDHGH 1428
KG TVI IAHR+ST+ + D I++LD G
Sbjct: 142 LAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 208 bits (532), Expect = 4e-61
Identities = 87/217 (40%), Positives = 129/217 (59%), Gaps = 4/217 (1%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV Y P L DINF+I+ G V IVG TGAGK++++N L R GQ
Sbjct: 1 GEIEFENVNFSYDEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-CHVK 1335
IL+DG++I + + LR VV Q FLF G++ +N+ N + K
Sbjct: 60 ILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAH 119
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ + + G +T + E+G + S G+RQL+ +ARA+L+ K+L LDE T+N+D +T ++Q
Sbjct: 120 DFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQ 179
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
A+ KG T I IAHR+ST+ N D+IL+LD G ++
Sbjct: 180 EALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 1e-59
Identities = 155/525 (29%), Positives = 259/525 (49%), Gaps = 36/525 (6%)
Query: 922 VDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981
+DT G + + + + +C+ + +S +R SF + R +++ L ++
Sbjct: 188 IDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQ 247
Query: 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFV---GLLGIAVVLSYVQVFFL 1038
+ FFD+ G + +R SSD + SL +N+LL N V GLLG + LS
Sbjct: 248 DLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVT 307
Query: 1039 LLLVPFWFIYSK-LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1097
L+ +P F+ K Y+ S EL+ ++V+++ A E L+G T+R+F +E+
Sbjct: 308 LINLPLVFLAEKVFGKRYQLLSEELQ--EAVAKANQVAE--EALSGMRTVRSFAAEEGEA 363
Query: 1098 AKFK---EHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG---SRGNLPAT 1151
++FK E + + LW + L +L ++ + V+ S GNL +
Sbjct: 364 SRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL-VS 422
Query: 1152 FSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLS 1210
F L Y + + ++ + + + E+V EY+D P L G +L+
Sbjct: 423 F---------LLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTG--TLA 471
Query: 1211 PDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268
P +GLIEFQ+V+ Y +P +P L + FT+ G V +VG +G+GKS++ L
Sbjct: 472 PLN-LEGLIEFQDVSFSYPNRPDVP-VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQN 529
Query: 1269 LTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWS 1327
L GGQ+L+DG+ ++ L + A+V Q P LF GS+R+N+ D +I +
Sbjct: 530 LYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMA 589
Query: 1328 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ + + + G +T V E G S GQ+Q I +ARAL++ +VL LDE T+ +D
Sbjct: 590 AAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD 649
Query: 1386 AQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
A+ +LQ S TV+ IAHR+STV D+IL+L G +V
Sbjct: 650 AECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 6e-57
Identities = 151/564 (26%), Positives = 260/564 (46%), Gaps = 50/564 (8%)
Query: 889 AKFSGWFITLVICLSAILM--QASRNGNDLWLSYWVDTTGSSQ--TKYSTSFYLVVLCI- 943
+ + L+I +A L A R D S SS +Y +V L +
Sbjct: 18 GRVLAALVALLITAAATLSLPYAVRLMIDHGFS-----KDSSGLLNRYFAFLLVVALVLA 72
Query: 944 ---FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1000
F L +R AV H +++ FFD+ G +++R ++
Sbjct: 73 LGTAARFYLVTWLGERVV---ADIRRAVFAH------LISLSPSFFDKNRSGEVVSRLTT 123
Query: 1001 DLYMIDDSLPFILNILLAN---FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057
D ++ + L++ L N +G L + + S +LL VP + + F
Sbjct: 124 DTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPL--VLLPILLF--- 178
Query: 1058 TSRELRRL-----DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY 1112
R +R+L D ++ + YA ETL T++AF ED ++F V +
Sbjct: 179 -GRRVRKLSRESQDRIADAGSYAG--ETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAAR 235
Query: 1113 SELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1172
+ L+ + +L + I + +G+ + S G +G + YA + +
Sbjct: 236 QRIRTRALLTAIVIVL---VFGAIVGVLWVGAHDVIAGKMS-AGTLGQFVFYAVMVAGSI 291
Query: 1173 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KP 1230
G + E ++ + ER++E + + + P +G IEF+ V Y +P
Sbjct: 292 GTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARP 351
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
PA L +N T+ G V +VG +GAGKS++ L R G+IL+DG+++
Sbjct: 352 DQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPA 410
Query: 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETF 1346
+LR R A+VPQ P LF S+ +N+ + D D ++ + H E + A+ G +T+
Sbjct: 411 ELRARMALVPQDPVLFAASVMENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGYDTY 469
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406
+ E G++ S GQRQ I +ARA+LK + +L LDE T+ +DA++ ++Q A+ + KG T +
Sbjct: 470 LGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTL 529
Query: 1407 TIAHRISTVLNMDEILILDHGHLV 1430
IAHR++TVL D I+++D G +V
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIV 553
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 2e-56
Identities = 136/511 (26%), Positives = 243/511 (47%), Gaps = 45/511 (8%)
Query: 938 LVVLCIFCMFNS--FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
L VL C F S L+ V S + + + K++ PV FFD+ P G +L
Sbjct: 63 LAVLRGICSFVSTYLLSWV--------SNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLL 114
Query: 996 NRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1052
+R + D + + +L+ +GL + + S+ +++++P L
Sbjct: 115 SRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPV------LS 168
Query: 1053 FFYRSTSRELRRLDS---VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109
R S+ LRR+ S + ETL G ++ F + Y +F +R
Sbjct: 169 ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRR 228
Query: 1110 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169
+ +A S QL+A+ ++ + + + + + T G + A I
Sbjct: 229 LAMKMTSAGSISSPITQLIASLALAVV--LFIALFQAQAGSL--TAG------DFTAFIT 278
Query: 1170 SLLGNF--LSSFTET----EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1223
+++ L S T ++ + + E + +D P E+ G +++ +G +EF+N
Sbjct: 279 AMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIER---ARGDVEFRN 335
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN 1283
VT RY AL I+ IE G V +VGR+G+GKS+++N + R GQIL+DG +
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 1284 IINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAV 1341
+ + + LR + A+V Q LF ++ +N+ D +I L + ++ V+ +
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKL 455
Query: 1342 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
GL+T + E+G+ S GQRQ + +ARALLK + +L LDE T+ +D ++ ++Q A+
Sbjct: 456 PLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL 515
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+G T + IAHR+ST+ D I+++D G +V
Sbjct: 516 MQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 4e-54
Identities = 138/449 (30%), Positives = 216/449 (48%), Gaps = 59/449 (13%)
Query: 1004 MIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL-QFFYRSTSREL 1062
+ID LPF L LL + ++G +V + L+ +P + L Q + E
Sbjct: 267 LID--LPFALLFLLV--IAIIGGPLV------WVPLVAIPLILLPGLLLQRPLSRLAEES 316
Query: 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1122
R S R A E+L+G TI+A +E F ++ E V A
Sbjct: 317 MRE-SAQR---NAVLVESLSGLETIKALNAEGRFQRRW-EQTV--------AALARS--G 361
Query: 1123 LRLQLLAAFIISF------IATMAVI--G----SRGNLPATFSTPGLVG---LALSYAAP 1167
L+ + L+ +F + ++A++ G S G L + GL+ L+ AP
Sbjct: 362 LKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL----TMGGLIACVMLSGRALAP 417
Query: 1168 IVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMR 1227
+ L G L+ + + + + SL+ E M +P E G + L QG IEF+NV+
Sbjct: 418 LGQLAG-LLTRYQQAKTALQSLD---ELMQLPVERPEGTRFLHRP-RLQGEIEFRNVSFA 472
Query: 1228 YKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT 1287
Y AL +++ TI G +V I+GR G+GKS++L L L G +L+DG++I
Sbjct: 473 YPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVE--AVG 1342
DLR VPQ P LF G+LRDN+ P+ DD +I E V E V G
Sbjct: 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYA--DDEEILRAAELAGVTEFVRRHPDG 590
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402
L+ + E G S S GQRQ + LARALL+ +L LDE T+ +D ++ ++ + G
Sbjct: 591 LDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAG 650
Query: 1403 MTVITIAHRISTVLNM-DEILILDHGHLV 1430
T++ + HR S +L++ D I+++D+G +V
Sbjct: 651 KTLVLVTHRTS-LLDLVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 7e-54
Identities = 94/216 (43%), Positives = 139/216 (64%), Gaps = 2/216 (0%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G I+ ++ +RY+ +L L + I+ G +VGI GRTG+GKSS+ A FR+ I G+
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
I++DG++I P+ LR R +++ Q P LF GS+R NLDP D ++W LE +K
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1337 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
V+++ GL+ V E G +FSVGQRQL CLARA ++ S +L +DE TA++D T +ILQ
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ + TV+TIAHR+ST+L+ D +L+L G LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILV 233
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 9e-53
Identities = 122/568 (21%), Positives = 229/568 (40%), Gaps = 47/568 (8%)
Query: 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 341
LL +++ + PLL+ ++I L G L L + L L ++L S+ S+
Sbjct: 21 LLLLLSALLSLLLPLLIGRIIDALLADLGEL--LELLLLLLLLALLGGVLRALQSYLGSR 78
Query: 342 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVN-LANSFHDAWSLPF 400
L K+ + + +++K L + L+ + G++ + ++ D + N ++ ++
Sbjct: 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSIL 138
Query: 401 Q-IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEI 459
IG + L + A + L + +L + + +A + ++ + E R E
Sbjct: 139 LLIGSLVLLFSLSWRLALILLLILPLLALVL-SLLARKSRKLSRRVREALGELNARLLES 197
Query: 460 LTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP----TLFSLFT 515
L+ IR +K +G E + + + + + +
Sbjct: 198 LSGIRVIKAFGAEDRELKRFEEANEELRR--ANLRASRLEALLAPLMLLLSSLGTVLVLA 255
Query: 516 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 575
G F ++ L + + L++P+ V++ L A + RL L
Sbjct: 256 LGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL------ 309
Query: 576 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSL 635
+ + + ++ ++ + S+ + VL +S + G
Sbjct: 310 -------DEEPEVEDPPDPLKDTIGSIEFENVSFSY-----PGKKPVLKDISFSIEPGEK 357
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSG 682
VA++G GSGKS+L+ +L T G I G I V Q P + SG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 683 TIRDNILFGKNYDPQSY-SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
TIR+NI G+ E LK I+ + G +GE+GVNLSGGQR RLA+A
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIA 477
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RA+ I +LD+ SA+D + I + + +T ++ H + I AD ++V
Sbjct: 478 RALLRNPPILILDEATSALDTETEALIQDA--LKKLLKGRTTLIIAHRLSTIKNADRIIV 535
Query: 802 MDKGQVKWIGSSADLAV--SLYSGFWST 827
+D G++ G+ +L LY+ +
Sbjct: 536 LDNGRIVERGTHEELLAKGGLYARLYQA 563
|
Length = 567 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 7e-52
Identities = 131/490 (26%), Positives = 224/490 (45%), Gaps = 42/490 (8%)
Query: 965 RAAVKVHNTL----LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDS----LPFILNIL 1016
RAA KV +L L K+ F Q P G + ++ LP +
Sbjct: 66 RAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSA 125
Query: 1017 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYAS 1076
+ + +L ++ LL+ P ++ L + ++ +++R +
Sbjct: 126 IVPLL-ILIAIFFFNWAAALILLITAPLIPLFMIL-VGLAAKDASEKQFSALAR--LSGH 181
Query: 1077 FTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISF- 1135
F + L G T+RAF + + ++ + + T S+ LR+ L++ ++ F
Sbjct: 182 FLDRLRGLETLRAFGRTEATEERIRK-----DSEDFRKATMSV---LRIAFLSSAVLEFF 233
Query: 1136 ----IATMAV-IGSR----GNLPATFSTPGLVGLALS--YAAPIVSLLGNFLSSFTETEK 1184
IA +AV IG R G+L T GL L L+ + P+ LG+F F
Sbjct: 234 AYLSIALVAVYIGFRLLGEGDL--TL-FAGLFVLILAPEFFQPL-RDLGSF---FHAAAA 286
Query: 1185 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIE 1244
+ +++ ++ P + I +N++ RY P AL D+N TI+
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGKPALSDLNLTIK 345
Query: 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF 1304
G +VG +GAGKS++LN L G+I V+G+++ + R + + V Q+P+
Sbjct: 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPY 405
Query: 1305 LFEGSLRDNLDPFHMNDDLK-IWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLI 1362
LF G++R+N+ + + I + L++ + E V GL+T + E G S GQ Q +
Sbjct: 406 LFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL 465
Query: 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1422
LARALL + +L LDE TA++DA+T I+ A+ K TV+ I HR+ + D I+
Sbjct: 466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIV 525
Query: 1423 ILDHGHLVCI 1432
+LD+G LV
Sbjct: 526 VLDNGRLVEQ 535
|
Length = 559 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-51
Identities = 74/215 (34%), Positives = 120/215 (55%), Gaps = 3/215 (1%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+EF+NVT RY P L DI+ I G V +VG +G+GKS+++N + R + G+IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1337
+DG ++ + + LR + +V Q FLF ++ +N+ ++ + E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1338 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + G +T + E G+ S GQRQ I +ARALLK +L LDE T+ +D ++ ++Q A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1396 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ K T IAHR+ST+ N D I++L+ G +V
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIV 215
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 1e-50
Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 28/228 (12%)
Query: 1219 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
IEF+NV+ RY PS P L ++ TI G V +VG +G GKS++++ L R G+
Sbjct: 1 IEFKNVSFRY-PSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
IL+DG++I + +R LR + +V Q P LF+G++ +N+ + D +E
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIR-YGKPDA----------TDEE 108
Query: 1337 EVEAV--------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
EA G +T V E G S GQ+Q I +ARALL++ K+L LDE T+
Sbjct: 109 VEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+DA++ ++Q A+ KG T I IAHR+ST+ N D I +L +G +V
Sbjct: 169 ALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVV 216
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 2e-50
Identities = 108/447 (24%), Positives = 205/447 (45%), Gaps = 18/447 (4%)
Query: 992 GRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW----FI 1047
G +LNR +D+ +D+ ++ + V + + + LS+ + LLL I
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1107
L FYR+ + L R+ + + FT+ + G + + F +ED + + +
Sbjct: 175 IPTL--FYRAGRKFGAHLAQ-GRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 1108 QRTSYSELTASLWLSLRLQLLAAFIISF-IATMAVIGSRGNLPATFSTPGLVGLALSYAA 1166
+ + + L L+A ++ + MA G L + L+ + +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALL-VIFAALE 290
Query: 1167 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1226
L +F + + S R+ + +D E + + +E +NV+
Sbjct: 291 AFEPLAP---GAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATT---GQALELRNVSF 344
Query: 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1286
Y AL + N T+ G +V I+GR+G+GKS++L L G I ++G+ I +
Sbjct: 345 TYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404
Query: 1287 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEA--VGL 1343
+ LR +V+ Q LF G+LRDNL + + D ++W+ L++ +++ +E+ GL
Sbjct: 405 LDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGL 464
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
T++ E G S G+R+ + LARALL + + LDE T +D T + + +G
Sbjct: 465 NTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGK 524
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLV 1430
T++ + HR+ + MD I++LD+G ++
Sbjct: 525 TLLMVTHRLRGLERMDRIIVLDNGKII 551
|
Length = 573 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 6e-50
Identities = 143/521 (27%), Positives = 232/521 (44%), Gaps = 57/521 (10%)
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 994
+ ++ + IF L +R + FA + R V++ L ++ P+ +F+ G
Sbjct: 182 ALAMLAVAIFEPA---LGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDT 238
Query: 995 LNRF-----------SSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043
+ R S L ++ D L F++ L F + L+ V + L+
Sbjct: 239 VARVRELEQIRNFLTGSALTVVLD-LLFVVVFLAVMFF----YSPTLTGVVIGSLVCYAL 293
Query: 1044 FWFIYSKLQFFYRSTSRELRRL--DSVSRSPIYASF-TETLNGSSTIRAFKSEDYFMAKF 1100
+ LR+ D RS SF E++ G TI+A +E F ++
Sbjct: 294 LSVFVGPI----------LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRW 343
Query: 1101 KEHVVLYQRTSYSELTASLWLSLRLQL---LAAFIISFIATMAVIGSRGNLPATFSTPG- 1156
+ Y S+ ++L L I+ + VIG G L +PG
Sbjct: 344 DRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIG--GAL-----SPGQ 396
Query: 1157 LVG---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213
LV LA P++ L F +T ++LER+ + ++ P E L+
Sbjct: 397 LVAFNMLAGRVTQPVLRL-AQLWQDFQQT---GIALERLGDILNSPTEP--RSAGLAALP 450
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
+G I F+N+ RY P P L ++N I+ G +GIVG +G+GKS++ L RL
Sbjct: 451 ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ 510
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSV-L 1329
GQ+LVDG+++ LR + VV Q LF S+RDN+ +P + I + L
Sbjct: 511 HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-GAPFEHVIHAAKL 569
Query: 1330 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
H G T V E G + S GQRQ I +ARAL+ + ++L DE T+ +D ++
Sbjct: 570 AGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+++ + C+G TVI IAHR+STV D I++L+ G +
Sbjct: 630 ALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIA 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 4e-48
Identities = 82/217 (37%), Positives = 125/217 (57%), Gaps = 8/217 (3%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+NVT Y P P L D++FTI G +V IVG +G+GKS+IL LFR + G IL
Sbjct: 1 IEFENVTFAYDPGRPV-LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSIL 59
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVK 1335
+DG +I + LR VVPQ LF ++ N+ P +++ + + +
Sbjct: 60 IDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEE--VIEAAKAAQIH 117
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+++ G +T V E G+ S G++Q + +ARA+LK+ +L LDE T+ +D T +Q
Sbjct: 118 DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
A+ KG T I IAHR+ST++N D+I++L G +V
Sbjct: 178 AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIV 214
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 3e-47
Identities = 82/217 (37%), Positives = 121/217 (55%), Gaps = 7/217 (3%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I F++V RYKP P L +I+ I+ G VGIVGR+G+GKS++ + R G++L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH-- 1333
VDG ++ LR + VV Q LF S+RDN+ DP + + + L H
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ E E G +T V E G S GQRQ I +ARAL+ + ++L DE T+ +D ++ +
Sbjct: 121 ISELPE--GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ C G TVI IAHR+STV N D I++++ G +V
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIV 215
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 4e-47
Identities = 78/195 (40%), Positives = 120/195 (61%), Gaps = 1/195 (0%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG I++ Q WI+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111
Query: 682 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
GTI++NI+FG +YD Y +KAC L+ DI+ D +GE G+ LSGGQRAR++LA
Sbjct: 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA 171
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +++
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESCVC-KLMANKTRILVTSKMEHLKKADKILI 230
Query: 802 MDKGQVKWIGSSADL 816
+ +G + G+ ++L
Sbjct: 231 LHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 5e-47
Identities = 123/433 (28%), Positives = 201/433 (46%), Gaps = 51/433 (11%)
Query: 1015 ILLANFVGLLGIAVVL-----SYVQVFFLLLLVPF--WFIYSKLQFFYRSTSRELRRLDS 1067
++LA V L +A V S + + L+P I Q + ++ +
Sbjct: 125 LVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPIFMILIGWAAQ------AAARKQWAA 178
Query: 1068 VSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS--YSELTASLWLSLRL 1125
+SR + F + L G T++ F K +R+S Y E T + LR+
Sbjct: 179 LSR--LSGHFLDRLRGLPTLKLFGRA-------KAQAAAIRRSSEEYRERTMRV---LRI 226
Query: 1126 QLLAAFIISFIATMAV------IGSR---GNLPATFSTPGLVGLALSYAAPIVSL-LGNF 1175
L++ ++ AT++V IG R G+L GL L L AP L L
Sbjct: 227 AFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLA---TGLFVLLL---APEFYLPLRQL 280
Query: 1176 LSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1235
+ + + + E + +D L G ++ +EF V++ Y P A
Sbjct: 281 GAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAY-PGRRPA 337
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L ++FT+ G +V +VG +GAGKS++LN L G I V+G+ + + R +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEAV--GLETFVKESG 1351
A VPQ PFLF G++ +N+ D D +I LE+ + E V A+ GL+T + E G
Sbjct: 398 IAWVPQHPFLFAGTIAENIR-LARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGG 456
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
S GQ Q + LARA L+ + +L LDE TA++DA+T + + A+ + +G TV+ + HR
Sbjct: 457 AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHR 516
Query: 1412 ISTVLNMDEILIL 1424
++ D I++L
Sbjct: 517 LALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 178 bits (453), Expect = 4e-46
Identities = 137/570 (24%), Positives = 235/570 (41%), Gaps = 59/570 (10%)
Query: 290 IGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348
+ A PL +I K L S VLAI L L ++ ++ ++ ++ L +L
Sbjct: 169 LALATPLFSQIVIDKVLPDASRSTL-TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDL 227
Query: 349 SIMTIIYQKCLYVRLAERSEFSDGEIQT-FMSVDTDR---TVNLANSFHDAWSLPFQIGV 404
+ ++ L + L+ + S GEI + ++ R T ++ D L F +
Sbjct: 228 ELSGRFFRHLLRLPLSYFEKRSVGEIISRVRELEQIREFLTGSILTLIID---LLFALIF 284
Query: 405 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 464
+ K + LA L + + L+ T K++++ E+ E + I
Sbjct: 285 LAVMFLYSWKLTLIV-LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIE 343
Query: 465 TLKMYGWE-QIFSSW---LMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFA 520
T+K E + S W L K + K L+ + L + FG
Sbjct: 344 TVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL--ILWFGAIL 401
Query: 521 LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580
++ +L + L ISP+ + A +++ RL L
Sbjct: 402 VLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDIL----------- 450
Query: 581 AANSPSYISNGLSNFN--SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638
++P + + + ++ + + ++ V L +SL +P G VA+
Sbjct: 451 --DTPPEQEGDKTLIHLPKLQGEIEFENVS---FRYGPDDPPV-LEDLSLEIPPGEKVAI 504
Query: 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIR 685
+G GSGKS+LL +LG G I G + YV Q P++ SG+IR
Sbjct: 505 VGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564
Query: 686 DNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
+NI G +P+ + E ++A L I + G +GE G NLSGGQR RLALA
Sbjct: 565 ENIALG---NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALA 621
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RA+ I +LD+ SA+D + IL N + + +T I+ H + I +AD ++V
Sbjct: 622 RALLSKPKILLLDEATSALDPETEAIILQN--LLQILQGRTVIIIAHRLSTIRSADRIIV 679
Query: 802 MDKGQVKWIGSSADLAVS--LYSGFWSTNE 829
+D+G++ GS +L LY+ + E
Sbjct: 680 LDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 4e-46
Identities = 149/496 (30%), Positives = 240/496 (48%), Gaps = 63/496 (12%)
Query: 965 RAAVKVHNTLLTKIVNA----PVLFFDQTPGGRILNRFSSDLYMIDD-----------SL 1009
RAAV V L T +++A P+ FD P G++++R ++D +I D S
Sbjct: 91 RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150
Query: 1010 PFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVS 1069
I +L+A F L + L + +F +L+V IY Q + R +R
Sbjct: 151 ALIGAMLVAMF--SLDWRMALVAIMIFPAVLVV--MVIY---QRYSTPIVRRVRAY---- 199
Query: 1070 RSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS---LR-- 1124
+ I F E +NG S I+ F+ + A+F E + R+ Y +L L LR
Sbjct: 200 LADINDGFNEVINGMSVIQQFRQQ----ARFGERMGEASRSHYMARMQTLRLDGFLLRPL 255
Query: 1125 LQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTE--T 1182
L L +A I+ + + G FS G + + + YA +S LG E T
Sbjct: 256 LSLFSALILC--GLLMLFG--------FSASGTIEVGVLYA--FISYLGRLNEPLIELTT 303
Query: 1183 EKEM-----VSLERVLEYMDVPQEELCGYQSLSPDWPFQ-GLIEFQNVTMRYKPSLPAAL 1236
++ M V+ ERV E MD P++ Y + D P Q G I+ NV+ Y+ L
Sbjct: 304 QQSMLQQAVVAGERVFELMDGPRQ---QYGN--DDRPLQSGRIDIDNVSFAYRDDNLV-L 357
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
+IN ++ V +VG TG+GKS++ + L P+ G+I +DG + + LR
Sbjct: 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1354
A+V Q P + + N+ + ++W LE + E ++ GL T + E G +
Sbjct: 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIST 1414
SVGQ+QL+ LAR L+++ ++L LDE TAN+D+ T +Q A+++ + T++ IAHR+ST
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLST 537
Query: 1415 VLNMDEILILDHGHLV 1430
++ D IL+L G V
Sbjct: 538 IVEADTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 7e-46
Identities = 131/480 (27%), Positives = 226/480 (47%), Gaps = 49/480 (10%)
Query: 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILL---ANFVGLLGIAVVL 1030
L ++ PV FFD+ G +L+R + D + S L ++ A+ +GL +
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 1031 SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLD---SVSRSPIYASFTETLNGSSTI 1087
S+ L+++ P + R S+ R + + + S + L G +
Sbjct: 164 SWQLSLILIVIAPI------VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEV 217
Query: 1088 RAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS-RG 1146
F ++ +F + ++ ++AS +QL+A+ ++F+ A S
Sbjct: 218 LIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMD 277
Query: 1147 NL-PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205
L T + +AL P+ SL N + F ++ M + + + +D+ QE+ G
Sbjct: 278 TLTAGTITVVFSSMIAL--MRPLKSLT-NVNAQF---QRGMAACQTLFAILDLEQEKDEG 331
Query: 1206 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1265
+ + +G IEF+NVT Y AL +INF I G V +VGR+G+GKS+I N
Sbjct: 332 KRVIER---AKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANL 388
Query: 1266 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1325
L R I G+IL+DG ++ + + LR + A+V Q+ LF ++ +N I
Sbjct: 389 LTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANN-----------I 437
Query: 1326 WSVLEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLK 1370
+ + +E++E GL+T + E+G+ S GQRQ I +ARALL+
Sbjct: 438 AYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497
Query: 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
S +L LDE T+ +D ++ +Q A+ K T + IAHR+ST+ DEIL+++ G +V
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIV 557
|
Length = 582 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 160 bits (408), Expect = 1e-44
Identities = 82/220 (37%), Positives = 116/220 (52%), Gaps = 9/220 (4%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV+ Y AL +++ TI G +V I+GR G+GKS++L L L G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1333
+L+DG +I DLR VPQ LF G+LRDN+ P DD +I E
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--DDERILRAAELAG 118
Query: 1334 VKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V + V GL+ + E G S GQRQ + LARALL +L LDE T+ +D +
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
L+ + T+I I HR S +L++ D I+++D G +V
Sbjct: 179 LKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 154 bits (389), Expect = 4e-42
Identities = 78/203 (38%), Positives = 116/203 (57%), Gaps = 22/203 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--------------- 667
L+ +++ +P G L ++G+VG GKSSLL +ILGEM G +H S
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76
Query: 668 --GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
S+AY Q PW+L+ T+ +NI FG ++ Q Y AC+L DI L+ GD IGE
Sbjct: 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGE 136
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ---KT 782
+G+NLSGGQR R+ +ARA+Y ++I LDD SA+D ++ ++ I+ LQ +T
Sbjct: 137 RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL--KFLQDDKRT 194
Query: 783 RILCTHNVQAISAADMVVVMDKG 805
+L TH +Q + AD ++ M G
Sbjct: 195 LVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 9e-42
Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 4/219 (1%)
Query: 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+G +EF +V+ Y S + D++F + G V IVG TGAGKS+++N L R+
Sbjct: 331 VKGAVEFDDVSFSYDNSRQG-VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS 389
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1331
G+IL+DG +I LR AVV Q LF S+ DN+ P +++++ + +
Sbjct: 390 GRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQ 449
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
H E + G +T V E G S G+RQ + +ARALLK +L LDE T+ +D +T +
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
++ A+ KG T IAHR+STV N D IL+ D+G +V
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548
|
Length = 588 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 2e-41
Identities = 138/528 (26%), Positives = 231/528 (43%), Gaps = 85/528 (16%)
Query: 946 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1005
+ LT ++ + ++ AV + L I+ PV FF Q G I +R
Sbjct: 205 LLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQ------ 258
Query: 1006 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK--------------L 1051
LN +A F+ L V + F LL+ +Y L
Sbjct: 259 -------LNDQVAEFLSGQLATTALDAVMLVFYALLM---LLYDPVLTLIGIAFAAINVL 308
Query: 1052 QFFYRSTSREL--RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109
S R RRL + + + L T++A E F +++ YQ
Sbjct: 309 ALQLVSRRRVDANRRLQQDAGKLTGVAIS-GLQSIETLKASGLESDFFSRWAG----YQA 363
Query: 1110 TSYSELTASLWLSLRLQLLAAF--IISFIATMAVIG------SRGNLPATFSTPGLV--- 1158
L A L + Q+L +++ + + ++ G L + LV
Sbjct: 364 KL---LNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQL----TIGMLVAFQ 416
Query: 1159 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQEELCGYQSLS-PDWPFQ 1216
L S+ P+ +L+G F + E E ++ L+ VL +D EE + S P
Sbjct: 417 SLMSSFLEPVNNLVG-FGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLS 475
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1274
G +E +N+T Y P P + + + T++ G +V +VG +G+GKS+I +L + G
Sbjct: 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA----KL--VAGLY 529
Query: 1275 ----GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWS 1327
G+IL DG+ P L A+V Q FLFEG++RDNL DP + D
Sbjct: 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP-TIPDA----D 584
Query: 1328 VLEKCH---VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
++ C + + + + G + + E G + S GQRQ + +ARAL+++ +L LDE T+
Sbjct: 585 LVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATS 644
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+D +T I+ + + +G T I +AHR+ST+ + DEI++L+ G +V
Sbjct: 645 ALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-40
Identities = 74/213 (34%), Positives = 123/213 (57%), Gaps = 3/213 (1%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGD 59
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
I +DG++ + P++ R F V+PQ F+F G+ R NLDP+ D +IW V E+ +K
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1337 EVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D T +++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1395 AISSECKGMTVITIAHRISTVLNMDEILILDHG 1427
+ TVI HRI +L L+++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEEN 212
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 2e-40
Identities = 73/248 (29%), Positives = 131/248 (52%), Gaps = 13/248 (5%)
Query: 1188 SLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGT 1247
SL LE ++ G + L+ + P IE +++ + P +NFT+ G
Sbjct: 323 SLVTFLETPLAHPQQ--GEKELASNDPVT--IEAEDLEI-LSPDGKTLAGPLNFTLPAGQ 377
Query: 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1307
++ +VG +GAGK+S+LNAL P G + ++G+ + R + V Q+P L
Sbjct: 378 RIALVGPSGAGKTSLLNALLGFLP-YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 1308 GSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLI 1362
G+LRDN+ +P +D+ ++ LE V E + + GL+T + + SVGQ Q +
Sbjct: 437 GTLRDNVLLGNP-DASDE-QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRL 494
Query: 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEIL 1422
LARALL+ ++L LDE TA++DA + ++ A+++ + T + + H++ + D+I
Sbjct: 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554
Query: 1423 ILDHGHLV 1430
++ G +V
Sbjct: 555 VMQDGQIV 562
|
Length = 588 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 3e-40
Identities = 120/441 (27%), Positives = 212/441 (48%), Gaps = 35/441 (7%)
Query: 1003 YMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF--LLLLVPFWFIYSKLQFFYRSTSR 1060
+++ + LP ++ I L +L + ++L + F I S R
Sbjct: 58 WILFNILPTLVEISLV--AVILWRVYGWWFALTTLVTVILYLLFTVIVS--------DWR 107
Query: 1061 -ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASL 1119
+ RRL + + S A ++L T++ F +E+Y ++ + Y++ + + L
Sbjct: 108 TDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLL 167
Query: 1120 WLSLRLQLLAAFIISFIATMAVIG-SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
L+ + + + + TM+ +G G L T G + + + L S
Sbjct: 168 VLNFGQTAIFSTGLRVMMTMSALGVEEGQL-----TVGDLVNVNALLFQLSIPLNFLGFS 222
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD----WPF-QGLIEFQNVTMRYKPSLP 1233
+ E + + +E++ + +DV E S +PD WP G + F NV+ Y P P
Sbjct: 223 YREIRQALTDMEKMFDLLDVEAE-----VSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP 277
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
L+ I+FTI G V IVG +GAGKS+IL LFR + G I +DG +I + + LR
Sbjct: 278 I-LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 1294 GRFAVVPQSPFLFEGSLRDNLDPFHMND--DLKIWSVLEKCHVKEEVEA--VGLETFVKE 1349
+VPQ LF ++ N+ + D ++ + E + + +++ G +T V E
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIK-YGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGE 395
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIA 1409
G+ S G++Q + +AR +LK+ +L LDE T+ +D T +Q A+ G T + IA
Sbjct: 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIA 455
Query: 1410 HRISTVLNMDEILILDHGHLV 1430
HR+ST+++ DEI++LD+G +V
Sbjct: 456 HRLSTIIDADEIIVLDNGRIV 476
|
Length = 497 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 157 bits (398), Expect = 3e-39
Identities = 133/508 (26%), Positives = 236/508 (46%), Gaps = 50/508 (9%)
Query: 946 MFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1005
+ L+ ++ F R ++ + + + + P+ FF G I++RF+ +I
Sbjct: 207 IIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFTDASSII 266
Query: 1006 DDSLPFILNILL-ANFVGLLGIAVVLSYVQVFFLLLL-VPFWFIYSKLQFFYRSTSRELR 1063
D IL++ L + ++G+ +V + +F L LL +P +Y+ + ++ T +L
Sbjct: 267 DALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIP---VYAVIIILFKRTFNKLN 323
Query: 1064 RLDSVSRSPIYASFTETLNGSSTIRAFKSE-------DYFMAKFKEHVVLYQRTSYSELT 1116
+ + + +S E LNG TI++ SE D + YQ+ +
Sbjct: 324 HDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL 1176
+ +L+ +I + V+ RG L +G +++ A LL FL
Sbjct: 384 ----IKAVTKLILNVVILWTGAYLVM--RGKLT--------LGQLITFNA----LLSYFL 425
Query: 1177 SSF-------TETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYK 1229
+ + + V+ R+ E V E + + + G I +V+ Y
Sbjct: 426 TPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNL-NGDIVINDVSYSYG 484
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289
L DI+ TI+ ++ IVG +G+GKS++ L G+IL++G ++ +
Sbjct: 485 YGSNI-LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1290 RDLRGRFAVVPQSPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVE--AVGL 1343
LR +PQ P++F GS+ +NL D+ IW+ E +K+++E +G
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE--IWAACEIAEIKDDIENMPLGY 601
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKG 1402
+T + E G S S GQ+Q I LARALL SKVL LDE T+N+D T I+ N ++ + K
Sbjct: 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDK- 660
Query: 1403 MTVITIAHRISTVLNMDEILILDHGHLV 1430
T+I +AHR+S D+I++LDHG ++
Sbjct: 661 -TIIFVAHRLSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 9e-39
Identities = 83/228 (36%), Positives = 131/228 (57%), Gaps = 9/228 (3%)
Query: 1208 SLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNA 1265
SL+PD +G+++FQNVT Y P+ P L D++FT+ G +VG +G+GKS+++
Sbjct: 2 SLAPD-HLKGIVKFQNVTFAY-PTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVAL 59
Query: 1266 LFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DL 1323
L GGQ+L+DG I + L + ++V Q P LF SL+DN+ + +
Sbjct: 60 LENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNI-AYGLQSCSFE 118
Query: 1324 KIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
+ +K H + A G +T V E G S GQ+Q + +ARAL+++ +VL LDE T
Sbjct: 119 CVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 1382 ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1429
+ +DA++ +Q A+ + TV+ IAHR+STV D+IL+LD G +
Sbjct: 179 SALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 4e-38
Identities = 107/454 (23%), Positives = 194/454 (42%), Gaps = 66/454 (14%)
Query: 991 GGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL------------ 1038
G +L R +D +D + +++ V L+ A ++ + V +
Sbjct: 109 RGDLLGRLGAD---VDALQDLYVRVIVPAGVALVVGAAAVAAIAVLSVPAALILAAGLLL 165
Query: 1039 -LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFM 1097
+ P + + R+ + L RL R + A T+ L+G++ + A + +
Sbjct: 166 AGFVAPLVSLRAA-----RAAEQALARL----RGELAAQLTDALDGAAELVASGALPAAL 216
Query: 1098 AKFKEHVVLYQRTSYSELTA-----SLWLSLR--LQLLAAFIISFIATMAVIGSRGNL-- 1148
A+ + ELT + +L L LLAA + + G
Sbjct: 217 AQ-------VEEAD-RELTRAERRAAAATALGAALTLLAAGLA--VLGALWAGGPAVADG 266
Query: 1149 ---PATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205
P T + L+ LA A + L T + ER++E +D G
Sbjct: 267 RLAPVTLAVLVLLPLAAFEA---FAALPAAAQQLTRVRA---AAERIVEVLDAAGPVAEG 320
Query: 1206 YQSLSPDWPFQGL-IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1264
+ +E ++++ Y + P L ++ + G +V I+G +G+GKS++L
Sbjct: 321 SAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLA 379
Query: 1265 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-----DPFHM 1319
L L G++ +DG+ + + ++R R +V Q LF+ ++R+NL D
Sbjct: 380 TLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDA--- 436
Query: 1320 NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
D ++W+ LE+ + + + A+ GL+T + E G S G+RQ + LARALL + +L L
Sbjct: 437 -TDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 495
Query: 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
DE T ++DA+TA L + + G TV+ I H
Sbjct: 496 DEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 4e-38
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 10/218 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N+T +Y A L ++F +E G G++G GAGK+++L L L G+I
Sbjct: 4 VIEVRNLTKKYGGDKTA-LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK-IWSVLEKCHVK 1335
LV G +++ P +R R VPQ P L+ ++R+NL+ F L + + ++
Sbjct: 63 LVLGYDVVKEP-AKVRRRIGYVPQEPSLYPELTVRENLEFFAR---LYGLSKEEAEERIE 118
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E +E GLE + + S G +Q + +A ALL ++L LDE T+ +D ++ +
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 1396 ISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ K G+T++ H + + D ++IL+ G ++
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKII 216
|
Length = 293 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 8e-38
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 1219 IEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
I ++ + + L DIN + G V IVG G+GKSS+L+AL G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1332
+ V G A V Q P++ G++R+N+ PF D+ + V++ C
Sbjct: 61 SVSV-------------PGSIAYVSQEPWIQNGTIRENILFGKPF---DEERYEKVIKAC 104
Query: 1333 HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
++ ++E + G T + E GI+ S GQ+Q I LARA+ + + LD+ + VDA
Sbjct: 105 ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGR 164
Query: 1391 -ILQNAISSECKGM-TVITIAHRISTVLNMDEILILDHG 1427
I +N I T I + H++ + + D+I++LD+G
Sbjct: 165 HIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-36
Identities = 86/316 (27%), Positives = 151/316 (47%), Gaps = 13/316 (4%)
Query: 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD-GYVLAIALG 322
SL+R + A Y K+++D P+LL +KFL + G L + L
Sbjct: 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLF 292
Query: 323 LTSILKSFFDTQYSFHLS-KLKLKLRSSIMTIIYQKCLYV--RLAERSEFSDGEIQTFMS 379
LT +++S ++ +++S + L+ RS++ +I++KC + + + + + G I MS
Sbjct: 293 LTQLIQSVCLHRF-YYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMS 351
Query: 380 VDTDRTVNLANSFHD----AWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 435
D +R NSF WS P + +++ LL V + + +A+ ++ +P+N I
Sbjct: 352 TDVER----INSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIM 407
Query: 436 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKY 495
A K+ K D R++ T E + IR K WE F + + R+ E+++L +
Sbjct: 408 KHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467
Query: 496 LDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGL 555
F TPTL F ++ L+GH+L +VF +AL L P PWV +
Sbjct: 468 ARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTV 527
Query: 556 IDAFISIRRLTRFLGC 571
+ +SI+R++ FL C
Sbjct: 528 LQFLVSIKRISTFLEC 543
|
Length = 1560 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 56/204 (27%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
VL VSL + G VA++G GSGKS+LL +L T G I G
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+IAYVPQ P++ SGTIR+NI
Sbjct: 71 LESLRKNIAYVPQDPFLFSGTIRENI---------------------------------- 96
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
LSGGQR R+A+ARA+ I +LD+ SA+D + IL + KT
Sbjct: 97 -------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA--LRALAKGKT 147
Query: 783 RILCTHNVQAISAADMVVVMDKGQ 806
I+ H + I AD ++V+D G+
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 3e-36
Identities = 127/485 (26%), Positives = 206/485 (42%), Gaps = 95/485 (19%)
Query: 992 GRILNRFSSDLYMID--DSLPF-ILNILLANFVGLLGIAVVLSYVQV----------FFL 1038
G +LNR +D +D D L +++ L+A V +L + + LS+ + L
Sbjct: 117 GDLLNRLVAD---VDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGILLLL 173
Query: 1039 LLLVPFWFIYSKLQFFYR---STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDY 1095
LLL+P FYR ++L L + R TE L G + + F +ED
Sbjct: 174 LLLLPL--------LFYRLGKKPGQDLTHLRAQYRV----QLTEWLQGQAELTLFGAEDR 221
Query: 1096 FMAKFK--EHVVLYQRTSYSELTASLWLSLRLQLLA-AFIISFIATMAVIGSRGNLP--- 1149
+ + + E L + + LT LS L +LA + + +A G GN
Sbjct: 222 YRQQLEQTEQQWLAAQRRQANLTG---LSQALMILANGLTVVLMLWLAAGGVGGNAQPGA 278
Query: 1150 ----------ATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1199
A F V A + LG ++S R+ E +
Sbjct: 279 LIALFVFAALAAFEALMPVAGAFQH-------LGQVIAS----------ARRINEITE-- 319
Query: 1200 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259
Q+ + + S Q + NV+ Y L ++ I+ G +V ++GRTG GK
Sbjct: 320 QKPEVTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGK 379
Query: 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DP 1316
S++L L R G+IL++G I + LR +VV Q LF +LRDNL P
Sbjct: 380 STLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP 439
Query: 1317 FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK----------ESGISFSVGQRQLICLAR 1366
D + VL++ VGLE ++ E G S G+++ + +AR
Sbjct: 440 --NASDEALIEVLQQ---------VGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488
Query: 1367 ALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDEILILD 1425
ALL + +L LDE T +DA+T IL+ ++ + TV+ I HR++ + D I ++D
Sbjct: 489 ALLHDAPLLLLDEPTEGLDAETERQILEL-LAEHAQNKTVLMITHRLTGLEQFDRICVMD 547
Query: 1426 HGHLV 1430
+G ++
Sbjct: 548 NGQII 552
|
Length = 574 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 7e-35
Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 40/210 (19%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NV+ RY + P L +++F+IE G + I+G +G+GKS++ + L G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG +I +L +PQ LF GS+ +N+
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI------------------------ 96
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
S GQRQ + LARAL + ++L LDE +++D + L AI++
Sbjct: 97 ---------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAA 141
Query: 1399 -ECKGMTVITIAHRISTVLNMDEILILDHG 1427
+ G T I IAHR T+ + D IL+L+ G
Sbjct: 142 LKAAGATRIVIAHRPETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 9e-34
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 31/243 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ L+ ++L + G L A++G G+GKS+LLN +LG + T G I +G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGD 719
I++V Q P++ +GTIR+NIL + P + E + A + V G D
Sbjct: 391 EAWRKQISWVSQNPYLFAGTIRENILLAR---PDASDEEIIAALDQAGLLEFVPKPDGLD 447
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
IGE G LSGGQ RLALARA+ + + +LD+ + +DA+ + IL +
Sbjct: 448 TV-IGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQA--LQELAK 504
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQ 839
QKT ++ TH ++ + AD +VV+D G++ G+ +L +L Q++
Sbjct: 505 QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEEL--------SEKQGLYANLLKQQE 556
Query: 840 EMR 842
R
Sbjct: 557 GRR 559
|
Length = 559 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-33
Identities = 139/507 (27%), Positives = 222/507 (43%), Gaps = 68/507 (13%)
Query: 951 LTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1010
L ++R + SL+AAV + LL PV FF Q G + +R + I L
Sbjct: 198 LAVLRLETRMDASLQAAV--WDRLL----RLPVSFFRQYSTGDLASRAMG-ISQIRRILS 250
Query: 1011 -FILNILLANFVGLLGIAVVLSY------VQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1063
L LL+ LL + ++ Y V V L+ + + LQ R L
Sbjct: 251 GSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRK---ERRLL 307
Query: 1064 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123
L I + +NG S +R +E+ A++ + + L L
Sbjct: 308 ELSG----KISGLTVQLINGISKLRVAGAENRAFARWAK-----------LFSRQRKLEL 352
Query: 1124 RLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPI--VSLLGNFLSS--- 1178
Q + + F A + V+ S L A + L G LS + + + G+F +
Sbjct: 353 SAQRIENLLTVFNAVLPVLTS-AALFA-AAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQ 410
Query: 1179 FTETEKEMVSL----ERVLEYMDVPQEELCGYQSLSPD-WPFQGLIEFQNVTMRYKPSLP 1233
+ T ++++ ER ++ E D G IE VT RY+P P
Sbjct: 411 LSNTLISILAVIPLWERAKPILEALPE----VDEAKTDPGKLSGAIEVDRVTFRYRPDGP 466
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTP 1288
L D++ IE G V IVG +G+GKS+ L RL TP G + DG ++
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKST----LLRLLLGFETPE-SGSVFYDGQDLAGLD 521
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEA--VGL 1343
V+ +R + VV Q+ L GS+ +N+ P +++ W + E++ A +G+
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDE---AWEAARMAGLAEDIRAMPMGM 578
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
T + E G + S GQRQ + +ARAL++ ++L DE T+ +D +T +I+ S E +
Sbjct: 579 HTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSE--SLERLKV 636
Query: 1404 TVITIAHRISTVLNMDEILILDHGHLV 1430
T I IAHR+ST+ N D I +LD G +V
Sbjct: 637 TRIVIAHRLSTIRNADRIYVLDAGRVV 663
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 1e-32
Identities = 112/514 (21%), Positives = 200/514 (38%), Gaps = 80/514 (15%)
Query: 339 LSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSL 398
LS L+++L ++K + A + G++ + D D L N +
Sbjct: 90 LSALRVRL--------FEKLEPLSPALLLRYRSGDLLNRLVADVD---ALDNLYLRV-IA 137
Query: 399 PFQIGVALYLLYTQVKFAFVSGLAITI--------LLIPVNKWIANLIANATEKMMKQKD 450
P + + L + T F LA+ + L+IP + + Q
Sbjct: 138 PAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIP---TLFYRAGRKFGAHLAQGR 194
Query: 451 ERIR-RTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT 509
+R + + + L ++G E + + L T +S +K +
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL----L 250
Query: 510 LFSLFT-FGLFALMGHQLD---------AAMVFTCLALFNSLISPLNSFPWVINGLIDAF 559
L + GL M Q+ A + A + + +I
Sbjct: 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIA-- 308
Query: 560 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 619
S RRL L + E + A+ +++ + ++ +Q
Sbjct: 309 -SARRLNDIL-----DQKPEVTFPDE--------QTATTGQALELRNVSFTY----PGQQ 350
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L +L L +G VA++G GSGKS+LL + G GSI +G
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 669 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMV----GGDMAY 722
+I+ + Q + SGT+RDN+ P + E L A V + ++ G +
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLRLAN---PDASDEELWAALQQVGLEKLLESAPDGLNTW 467
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+GE G LSGG+R RLALARA+ H + +++LD+ +D R +L A++ H KT
Sbjct: 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVL--ALLFEHAEGKT 525
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
++ TH ++ + D ++V+D G++ G+ A+L
Sbjct: 526 LLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL 559
|
Length = 573 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 71/210 (33%), Positives = 115/210 (54%), Gaps = 5/210 (2%)
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
Y + AL ++NFT++ G +GI G TG+GKS++L+ + R + G I + +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-- 1341
+ R R AVV Q+PFLF ++ +N+ + +I V V +++ +
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ 439
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSEC 1400
G +T V E G+ S GQ+Q I +ARALL ++++L LD+ + VD +T IL N +
Sbjct: 440 GYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN-LRQWG 498
Query: 1401 KGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+G TVI AHR+S + EIL++ HGH+
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIA 528
|
Length = 569 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 10/215 (4%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +N++ Y AL DI+ TI+ G V IVG G+GKS++L L L G++LV
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVK 1335
DG ++ +++LR + +V Q+P F ++ + + ++ + + E+ V+
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEE--IEER--VE 116
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E +E VGLE S + S GQ+Q + +A L +L LDE TA +D L
Sbjct: 117 EALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 1396 ISS-ECKGMTVITIAHRISTVLN-MDEILILDHGH 1428
+ + +G T+I + H + +L D +++L+ G
Sbjct: 177 LKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-32
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 31/231 (13%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPIC-- 1273
IE +++ + Y AL DI+ I G ++G +G GKS++L L RL P
Sbjct: 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 1274 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G++L+DG +I ++ V +LR R +V Q P F GS+ DN+ L++ + K
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAY-----GLRLHGIKLK 113
Query: 1332 CHVKEEVEA----VGLETFVKE--SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ E VE L VK+ + S GQ+Q +CLARAL +VL LDE T+ +D
Sbjct: 114 EELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173
Query: 1386 AQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLV 1430
+ + ++ I+ K T++ + H R++ D L +G LV
Sbjct: 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLV 219
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 4e-32
Identities = 77/217 (35%), Positives = 122/217 (56%), Gaps = 4/217 (1%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G +EF+++T + + + D++F + G V IVG TGAGK++++N L R+ GQ
Sbjct: 333 GAVEFRHITFEF-ANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVK 1335
IL+DG++I LR A V Q LF S+R+N+ D +++ +
Sbjct: 392 ILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAH 451
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ + G +T V E G S G+RQ + +ARA+LK++ +L LDE T+ +D +T + ++
Sbjct: 452 DFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVK 511
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
NAI + K T IAHR+STV N D +L LD G L+
Sbjct: 512 NAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 6e-32
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 56/211 (26%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +N++ RY AL +++ T++ G V +VG G+GKS++L A+ L G+IL+
Sbjct: 1 EIENLSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
DG +I P+ +LR R VPQ
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ-------------------------------------- 80
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
S GQRQ + LARALL + +L LDE T+ +D + L +
Sbjct: 81 --------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL 126
Query: 1400 C-KGMTVITIAHRISTVLN-MDEILILDHGH 1428
+G TVI + H D +++L G
Sbjct: 127 AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-32
Identities = 57/212 (26%), Positives = 102/212 (48%), Gaps = 37/212 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ NV+ Y L +++ ++ G ++ ++GR+G+GKS++L L G+I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG+ + + + L +V+ Q P+LF+ +LR+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
G FS G+RQ + LAR LL+ + ++ LDE T +D T L + I
Sbjct: 96 ------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE 143
Query: 1399 ECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
K T+I I H ++ + +MD+IL L++G ++
Sbjct: 144 VLKDKTLIWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 65/216 (30%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ VL +SL +P G VA++G GSGKS+L+N I + G I G
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYT 70
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMA 721
I V Q ++ + T+ +NI +G+ + E +A I + G
Sbjct: 71 LASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDT 130
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ- 780
IGE+GV LSGGQR R+A+ARA+ I +LD+ SA+D + R + A+ +++
Sbjct: 131 VIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV-QAAL--ERLMKN 187
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T + H + I AD +VV++ G++ G+ +L
Sbjct: 188 RTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEEL 223
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 5e-31
Identities = 47/275 (17%), Positives = 103/275 (37%), Gaps = 12/275 (4%)
Query: 894 WFITLVICLSAILMQASRNGNDLWLSYWVD-TTGSSQTKYSTSFYL-VVLCIFCMFNSFL 951
+ L++ + L+ L L ++D + + S+ L ++L + L
Sbjct: 4 AILLLILAGATALVFP------LLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLL 57
Query: 952 TLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPF 1011
+ R ++ LL +I+ P+ FFD G + +R ++D+ I D L
Sbjct: 58 LQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGD 117
Query: 1012 ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRS 1071
L + + ++G +V+ Y L+L+ + L R+L R + + +
Sbjct: 118 KLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYA 177
Query: 1072 PIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1131
+ E+L+G T++AF E+Y + ++ + + ++ + + QL++
Sbjct: 178 KAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 1132 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAA 1166
+ + G V LS
Sbjct: 238 SYALALWFGAYLVISG----GLSVGTVFAFLSLGL 268
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+E+ VL ++ + G VA++G G+GK++L+N ++ G I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR 72
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAY 722
I V Q ++ SGTI +NI G+ E K I + G
Sbjct: 73 KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+GE G NLS G+R LA+ARA+ I +LD+ S +D + + I + M +T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI--QEALEKLMKGRT 190
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGS 812
I+ H + I AD ++V+D G++ G+
Sbjct: 191 SIIIAHRLSTIKNADKILVLDDGKIIEEGT 220
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 69/215 (32%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSI------HASG 668
+L +SL +P G VA++G G GKS++++ + GE++L I
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYIG 724
I V Q P + GTI +NI +GK E +A D +SL G D +G
Sbjct: 78 QIGLVSQEPVLFDGTIAENIRYGKPDATDE--EVEEAAKKANIHDFIMSLPDGYD-TLVG 134
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQK 781
E+G LSGGQ+ R+A+ARA+ I +LD+ SA+DA+ + + L A+ G +
Sbjct: 135 ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKG-----R 189
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
T I+ H + I AD++ V+ GQV G+ +L
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL 224
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 16/197 (8%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L VS +P G VA++G G+GKS+LLN +LG + T GSI +G
Sbjct: 335 RPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394
Query: 669 --SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
IA+VPQ P++ +GTI +NI + E L+ LD ++ + G IGE
Sbjct: 395 RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
G LSGGQ RLALARA + + +LD+ + +DA+ +L + +T +L
Sbjct: 455 GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL--EALRALAQGRTVLL 512
Query: 786 CTHNVQAISAADMVVVM 802
TH + + AD +VV+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 8e-30
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 44/214 (20%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ RY AL DI+ T+E G G++G GAGK++++ + L G+I
Sbjct: 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
V G +I P +++ R +P+ P L+E ++R+NL
Sbjct: 59 VLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLK---------------------- 95
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
S G +Q + LA+ALL ++L LDE T+ +D ++ +
Sbjct: 96 ----------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 1398 SECK-GMTVITIAHRISTVLNM-DEILILDHGHL 1429
K G T++ +H + + D + IL++G +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-29
Identities = 62/227 (27%), Positives = 112/227 (49%), Gaps = 20/227 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E +N++ Y L D++F+I G GI+G G+GKS++L L L G++
Sbjct: 2 MLEVENLSFGYGGKP--ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRD--------NLDPFHMNDDLKIWSV 1328
L+DG +I + ++L + A VPQSP G ++ + +L F S
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF------GRPSK 113
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
++ V+E +E +GLE S G+RQ + +ARAL + + +L LDE T+++D
Sbjct: 114 EDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 1389 ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ + + G+TV+ + H ++ D +++L G +V
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ 220
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 6e-29
Identities = 70/223 (31%), Positives = 104/223 (46%), Gaps = 23/223 (10%)
Query: 1220 EFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
E +++T+ Y P L D++F ++ G + IVG GAGKS++L A+ L G I
Sbjct: 1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI 56
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQS---PFLFEGSLRD----NLDPFHMNDDLKIWSVLE 1330
V G P+ R R VPQ F S+RD L H + S +
Sbjct: 57 RVFGK-----PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYG-HKG-LFRRLSKAD 109
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
K V E +E VGL S GQ+Q + LARAL++ +L LDE A VD +T
Sbjct: 110 KAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQE 169
Query: 1391 ILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVC 1431
+ + +GMT++ + H + VL D +L+L+ +V
Sbjct: 170 DIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR-TVVA 211
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 9e-29
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 26/224 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + ++ Y AL D++ T+E G + ++G +G GK+++L + L G+IL
Sbjct: 1 LELKGLSKTYGSV--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLEKC 1332
+DG ++ P R +V Q LF P H+ ++ LK+ V +
Sbjct: 59 IDGRDVTGVPPE--RRNIGMVFQDYALF---------P-HLTVAENIAFGLKLRGVPKAE 106
Query: 1333 H---VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
V+E +E VGLE + S GQ+Q + LARAL + +L LDE + +DA+
Sbjct: 107 IRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLR 166
Query: 1390 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
L+ + + G+T I + H L + D I +++ G +V
Sbjct: 167 EELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
VL +S + G V ++G GSGKSSLL ++ + L+ GSI G
Sbjct: 14 PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL 73
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 717
I+ +PQ P + SGTIR N+ DP YS+ L+ L + + G
Sbjct: 74 HDLRSRISIIPQDPVLFSGTIRSNL------DPFGEYSDEELWQALERVGLKEFVESLPG 127
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
G + E G NLS GQR L LARA+ S I +LD+ ++VD + ++ I
Sbjct: 128 GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA-LIQKTIRE-A 185
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812
T + H + I +D ++V+DKG+V S
Sbjct: 186 FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-28
Identities = 58/205 (28%), Positives = 87/205 (42%), Gaps = 55/205 (26%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 669
+ VL VS + G +A+IG GSGKS+L ILG + T G + G+
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD 70
Query: 670 -------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+ Y+PQ + SG+I +NIL
Sbjct: 71 PNELGDHVGYLPQDDELFSGSIAENIL--------------------------------- 97
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
SGGQR RL LARA+Y I +LD+ S +D + R + AI T
Sbjct: 98 --------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKAAGAT 148
Query: 783 RILCTHNVQAISAADMVVVMDKGQV 807
RI+ H + +++AD ++V++ G+V
Sbjct: 149 RIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ L+ VSL + G VA+IG VGSGKS+LL + G T GS+ G
Sbjct: 14 NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP 73
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY- 722
+I YVPQ + GT+RDNI G L+A L +
Sbjct: 74 ADLRRNIGYVPQDVTLFYGTLRDNITLGAPL--ADDERILRAAELAGVTDFVNKHPNGLD 131
Query: 723 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN--AIMGPHM 778
IGE+G LSGGQR +ALARA+ + I +LD+ SA+D + ++G
Sbjct: 132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-- 189
Query: 779 LQKTRILCTHNVQAISAADMVVVMDKGQV 807
KT I+ TH + D ++VMD G++
Sbjct: 190 --KTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 15/222 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N++ RY AAL D++ IE G +V ++G G+GKS++L L L G++
Sbjct: 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1278 LVDGLNI-INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD---PFHMNDDLKIWSVLEK 1331
LVDGL+ + +LR + +V Q+P LF ++ D + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER--- 118
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E +E VGLE + + S GQ+Q + +A L ++L LDE TA +D +
Sbjct: 119 --VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176
Query: 1392 LQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
L + E G T+I + H + VL D +++LD G ++
Sbjct: 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL 218
|
Length = 235 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-28
Identities = 69/212 (32%), Positives = 102/212 (48%), Gaps = 21/212 (9%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ L +S L G +A+IG GSGKS+L I+G T GS+ G
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 669 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 721
I Y+PQ + GT+ +NI FG+N DP+ E K + ++ + L G D
Sbjct: 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYD-T 446
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 779
IG G LSGGQR R+ALARA+Y + +LD+ S +D + A L+NAI
Sbjct: 447 VIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA---LANAIKALKAR 503
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811
T ++ TH + D ++V+ G++ G
Sbjct: 504 GITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 6e-28
Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 42/215 (19%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NV+ RY L+D++ IE G V ++G +G+GKS++L + L G IL
Sbjct: 1 LELKNVSKRYGQKT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 1279 VDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+DG L + + LR R +V Q LF H+ +VLE
Sbjct: 59 IDGEDLTDLEDELPPLRRRIGMVFQDFALF----------PHL-------TVLENI---- 97
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
A+GL SG GQ+Q + LARAL VL LDE T+ +D T ++ +
Sbjct: 98 ---ALGL------SG-----GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALL 143
Query: 1397 SSECK--GMTVITIAHRISTVLNM-DEILILDHGH 1428
S G+TV+ + H + + D +++L G
Sbjct: 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 30/234 (12%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L+E +N+++ + AL D++F+I+ G +G+VG +G+GKS++ A+ L G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 1276 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWS 1327
I+ DG +++ + R +V Q P +L+P + + L+I
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMS-------SLNPRMTIGEQIAEPLRIHG 113
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGIS------FSVGQRQLICLARALLKSSKVLCLDECT 1381
L K ++E + L + S GQRQ + +ARAL + K+L DE T
Sbjct: 114 KLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 1382 ANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ +D AQ +L+ + E G+T++ I H + V + D + ++ G +V
Sbjct: 174 SALDVSVQAQILDLLKK-LQEE-LGLTLLFITHDLGVVAKIADRVAVMYAGKIV 225
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 43/243 (17%)
Query: 1218 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1271
L+E +N+T+ + A+ D++F +E G +GIVG +G+GKS++ AL L P
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 1272 ICGGQILVDGLNIIN---TPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327
I G++++DG +++ +R LRG R A++ Q P SL N + I
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM---TSL---------NPVMTIGD 112
Query: 1328 VLEKCH------VKEEVEAVGLETFVKESGIS-----------FSVGQRQLICLARALLK 1370
+ + + E +E ++ G+ S G RQ + +A AL
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELL-EQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL 171
Query: 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHG 1427
K+L DE T +D T + + + + + GM V+ I H + V + D ++++ G
Sbjct: 172 KPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKG 231
Query: 1428 HLV 1430
+V
Sbjct: 232 EIV 234
|
Length = 539 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-27
Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N+T+ Y L DI+ ++E G ++G GAGKS++L A+ L G+I
Sbjct: 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSP---FLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1331
+ G + R R R VPQ F +++D + + + +K
Sbjct: 62 KIFGKPV---RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW-FRRLNKKDK 117
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E +E VG+E S GQ+Q + LARAL ++ +L LDE VD
Sbjct: 118 EKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKE 177
Query: 1392 LQNAISSE-CKGMTVITIAHRISTVL-NMDEILILDHGHLVC 1431
+ + + +G TV+ + H + V+ D ++ L + HL+
Sbjct: 178 IYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIA 218
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-27
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 42/217 (19%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +N+++ Y L D++ +IE G VGI+G GAGKS++L L L G+IL+
Sbjct: 1 EVENLSVGYGGR--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
DG ++ + ++L + A VPQ+ +E
Sbjct: 59 DGKDLASLSPKELARKIAYVPQA-----------------------------------LE 83
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISS 1398
+GL S G+RQ + LARAL + +L LDE T+++D A +L+ +
Sbjct: 84 LLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE-LLRR 142
Query: 1399 ECK--GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ G TV+ + H ++ D +++L G +V
Sbjct: 143 LARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-26
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 32/213 (15%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ L+ VSL + G VA+IG +GSGKS+LL +LG T GS+ G
Sbjct: 475 GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 719
+I YVPQ P + GT+RDNI G Y E L+A L + G D
Sbjct: 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
M IGE+G +LSGGQR +ALARA+ I +LD+ SA+D + L
Sbjct: 593 MQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK-------DRL 644
Query: 780 Q-----KTRILCTHNVQAISAADMVVVMDKGQV 807
+ KT +L TH + D ++VMD G++
Sbjct: 645 KRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 2e-26
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 21/216 (9%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ VL +SL + G VA++G G GKS+LL + G I +G
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE 409
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM--- 720
+I+ V Q + S T+RDN+L P + E L V + ++ D
Sbjct: 410 AALRQAISVVSQRVHLFSATLRDNLLLAA---PNASDEALIEVLQQVGLEKLLEDDKGLN 466
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
A++GE G LSGG++ RL +ARA+ H + + +LD+ +DA+ R IL ++ H
Sbjct: 467 AWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL--ELLAEHAQN 524
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
KT ++ TH + + D + VMD GQ+ G+ +L
Sbjct: 525 KTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQEL 560
|
Length = 574 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-26
Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ +L +S L G + +IG GSGKS+L ++G T GS+ G
Sbjct: 346 GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR 405
Query: 669 -----SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTL-DVDISLMVGGDMA 721
I Y+PQ + GTI +NI FG+ DP+ E + + ++ + L G D
Sbjct: 406 EQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYD-T 464
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWILSNAIMGPHML 779
IGE G LSGGQR R+ALARA+Y + +LD+ S +D++ A L+ AI+
Sbjct: 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA---LAAAILAAKAR 521
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSAD 815
T ++ H A+++ D ++V+ G++ G +
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREE 557
|
Length = 580 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 70/221 (31%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 1219 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
+E +NV+ Y A AL DI+ ++E G V +VG +G GKS++L + L G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDN--LDPFHMNDDLKIWSVLE-KC 1332
+LVDG PV V Q L ++ DN L +L+ E +
Sbjct: 61 VLVDG-----EPVTGPGPDRGYVFQQDALLPWLTVLDNVALGL-----ELQGVPKAEARE 110
Query: 1333 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+E +E VGL F SG G RQ + LARAL VL LDE + +DA
Sbjct: 111 RAEELLELVGLSGFENAYPHQLSG-----GMRQRVALARALAVDPDVLLLDEPFSALDAL 165
Query: 1388 TASILQN---AISSECKGMTVITIAHRISTVLNM-DEILIL 1424
T LQ I E G TV+ + H I + + D +++L
Sbjct: 166 TREQLQEELLDIWRE-TGKTVLLVTHDIDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 6e-26
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
QG + + +T L I+F ++ G +GI+G +G+GKS++ L + P G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 1276 QILVDGLNIINTPVRDLRGRFA-VVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCH 1333
+ +DG ++ L GR +PQ LF+G++ +N+ F D K+
Sbjct: 392 SVRLDGADLRQWDREQL-GRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAG 450
Query: 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E + + G +T + E G + S GQRQ I LARAL ++ LDE +N+D++ +
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 1392 LQNAI-SSECKGMTVITIAHRISTVLNMDEILILDHGHL 1429
L AI +++ +G TV+ IAHR S + ++D+IL+L G +
Sbjct: 511 LAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 2e-25
Identities = 89/331 (26%), Positives = 158/331 (47%), Gaps = 48/331 (14%)
Query: 516 FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVIN---GLIDAFISIRRLTR-FLGC 571
G + +M +L + T AL + ++PL + +IN L A ++ RL +L
Sbjct: 399 TGAYLVMRGKLTLGQLITFNALLSYFLTPLEN---IINLQPKLQAARVANNRLNEVYLVD 455
Query: 572 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW-YCNNEEEQNVVLNQVSLCL 630
SE+ ++ ++ + ++N + + D + S+ Y +N +L+ +SL +
Sbjct: 456 SEFINKKKR-----TELNNLNGDIV-------INDVSYSYGYGSN------ILSDISLTI 497
Query: 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVP 677
S ++G GSGKS+L ++G G I +G I Y+PQ P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLSGGQ 734
+I SG+I +N+L G + S E AC + DI M G + E+G ++SGGQ
Sbjct: 558 YIFSGSILENLLLGAK-ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
+ R+ALARA+ S + +LD+ S +D + I++N + ++ KT I H +
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL---NLQDKTIIFVAHRLSVAK 673
Query: 795 AADMVVVMDKGQVKWIGSSADLAVSLYSGFW 825
+D ++V+D G++ GS +L +GF+
Sbjct: 674 QSDKIIVLDHGKIIEQGSHDELL--DRNGFY 702
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 60/226 (26%), Positives = 102/226 (45%), Gaps = 25/226 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T YK A+ D++ + G G++G GAGK++ L L G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
++G + I T + R PQ LF+ ++R++L + + + + +KEE
Sbjct: 61 INGYS-IRTDRKAARQSLGYCPQFDALFDELTVREHLRFYAR-----LKGLPKS-EIKEE 113
Query: 1338 VEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
VE +GL + + S G ++ + LA AL+ VL LDE T+ +D + +
Sbjct: 114 VELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW 173
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDE-------ILILDHGHLVCI 1432
+ I KG ++I H +MDE I I+ G L CI
Sbjct: 174 DLILEVRKGRSIILTTH------SMDEAEALCDRIAIMSDGKLRCI 213
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 31/221 (14%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + V+ + + L DIN ++E G V I+G +G GKS++L + L G++
Sbjct: 3 LLEIEGVSKSF-GGVEV-LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKC 1332
L+DG PV V Q L ++ DN L+ +
Sbjct: 61 LLDG-----RPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE------ 109
Query: 1333 HVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
KE +E VGL F + SG G RQ + +ARAL K+L LDE +DA
Sbjct: 110 RAKELLELVGLAGFEDKYPHQLSG-----GMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 1388 TASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILD 1425
T LQ+ + + TV+ + H + + + D +++L
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLS 205
|
Length = 248 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 66/221 (29%), Positives = 106/221 (47%), Gaps = 18/221 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL VS +P G VA++G GSGKS++L + ++ GSI G
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRR 75
Query: 669 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+I VPQ + + TI NI +G+ + + E KA + I G +GE+G
Sbjct: 76 AIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERG 135
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+ LSGG++ R+A+ARA+ I +LD+ SA+D R I + + +T I+
Sbjct: 136 LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA--LRDVSKGRTTIVIA 193
Query: 788 HNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFWS 826
H + I AD ++V+ G++ G+ +L LY+ W
Sbjct: 194 HRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWK 234
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-24
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 22/228 (9%)
Query: 1218 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+IE +NV+ + AL D++ I G GI+G +GAGKS++L + L
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 1275 GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1329
G + VDG ++ +R LR + ++ Q L ++ +N+ P L++ V
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP------LELAGVP 114
Query: 1330 -EKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ V E +E VGL S GQ+Q + +ARAL + K+L DE T+ +D
Sbjct: 115 KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDP 174
Query: 1387 QTA-SILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+T SIL+ I+ E G+T++ I H + V + D + +LD G LV
Sbjct: 175 ETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVAVLDQGRLV 221
|
Length = 339 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 24/228 (10%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L+ +N+++ Y AL++++ IE G +GIVG +G+GKS++ L L G
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62
Query: 1276 QILVDGLNIIN-TPVRDLRGRFAVVPQSPFL-------FEGSLRDNLDPFHMND-DLKIW 1326
IL+DG + + +V Q P+ L + L P ++ +I
Sbjct: 63 SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIA 122
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+L++ + L+ E S GQRQ I +ARAL+ K+L LDE T+ +D
Sbjct: 123 ELLDQVGLPPSF----LDRRPHE----LSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
Query: 1387 QT-ASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
A IL N + K G+T + I+H ++ V +M D I ++D+G +V
Sbjct: 175 SVQAQIL-NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIV 221
|
Length = 252 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 64/234 (27%), Positives = 101/234 (43%), Gaps = 39/234 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I F+NV+ Y P AL D++F I G V + G +GAGKS++L ++ G+I
Sbjct: 1 MIRFENVSKAY-PGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1278 LVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1330
LV+G ++ R+ LR + VV Q F + D +V E
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQD--------------FRLLPDR---TVYENVAL 102
Query: 1331 --------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
++ V VGL+ + S G++Q + +ARA++ VL D
Sbjct: 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162
Query: 1379 ECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVLNMDE-ILILDHGHLV 1430
E T N+D + I++ G TV+ H + V M +L L+ G LV
Sbjct: 163 EPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
|
Length = 223 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 71/216 (32%), Positives = 107/216 (49%), Gaps = 12/216 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+ V+ Y L DI+ EGG IVG +GAGKS+++ + RL G IL
Sbjct: 4 IEFKEVS--YSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+DG++I V DLR + +V Q P LFEG+++DN++ M K V+ +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYL 115
Query: 1339 EAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
VGL + + S G+ Q + +AR L + +VL LDE T+ +D + I++ I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 1398 --SECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+TVI I H + + D L+ G LV
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211
|
Length = 241 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 22/213 (10%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
V+L+ +SL + G +V ++G GSGKS+L I + +G + G
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 669 -SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTL---DVDISLMVGGDMAYI 723
+ V Q + + +IRDNI DP S ++A L IS + G +
Sbjct: 76 RQVGVVLQENVLFNRSIRDNIALA---DPGMSMERVIEAAKLAGAHDFISELPEGYDTIV 132
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
GE+G LSGGQR R+A+ARA+ H I + D+ SA+D + I+ N M +T
Sbjct: 133 GEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN--MHDICAGRTV 190
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
I+ H + + AD ++VM+KG++ GS +L
Sbjct: 191 IIIAHRLSTVKNADRIIVMEKGRIVEQGSHDEL 223
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 92/472 (19%), Positives = 167/472 (35%), Gaps = 70/472 (14%)
Query: 354 IYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQV 413
+Y++ LA R G++ + D D +L +P + + +
Sbjct: 92 VYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVR----VIVPAGVALVVGAAAVAA 147
Query: 414 KFAF--------VSGLAITILLIPVNKWIANLIANATEKMMKQ-KDERIRRTGEILTHIR 464
+GL + + P ++ A A E+ + + + E + + L
Sbjct: 148 IAVLSVPAALILAAGLLLAGFVAP---LVSLRAARAAEQALARLRGELAAQLTDALDGAA 204
Query: 465 TLKMYG--------WEQIFSSWL-MKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 515
L G E+ + R++ L + A +
Sbjct: 205 ELVASGALPAALAQVEEADRELTRAERRAAAATALGA-------ALTLLAAGLAVLGALW 257
Query: 516 FGLFALMGHQLD----AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGC 571
G A+ +L A +V LA F + P L + R+ L
Sbjct: 258 AGGPAVADGRLAPVTLAVLVLLPLAAFE----AFAALPAAAQQLTRVRAAAERIVEVLDA 313
Query: 572 SEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLP 631
+ E A + ++D + + VL+ VSL LP
Sbjct: 314 AGPVAEGSAPAAGAV---------GLGKPTLELRDLSAGY-----PGAPPVLDGVSLDLP 359
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------------IAYVPQVPW 678
G VA++G GSGKS+LL ++ G + G + G ++ Q
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAH 419
Query: 679 ILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737
+ T+R+N+ + + + L+ L + + G +GE G LSGG+R R
Sbjct: 420 LFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQR 479
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LALARA+ + I +LD+ +DA+ A +L + + + +T +L TH+
Sbjct: 480 LALARALLADAPILLLDEPTEHLDAETADELLEDLLAA--LSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 5e-24
Identities = 67/218 (30%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+G + +NVT+ L I+F+++ G + I+G +G+GKS++ + + P G
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHV 1334
+ +DG ++ +PQ LF G++ +N+ F N D KI + V
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGV 433
Query: 1335 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
E + + G +T + G + S GQRQ I LARAL K++ LDE +N+D + L
Sbjct: 434 HELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQAL 493
Query: 1393 QNAISS-ECKGMTVITIAHRISTVLNMDEILILDHGHL 1429
NAI + + +G+TV+ I HR S + +D+IL+L G +
Sbjct: 494 ANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRI 531
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-24
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 18/227 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ Y P AL D+N I G V I+G +GAGKS++L +L L G+IL
Sbjct: 4 IEVKNLSKTY-PGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 1279 VDGLNIINTP---VRDLRGRFAVVPQSP------FLFEGSLRDNLDPFHMN---DDLKIW 1326
+G+ I +R LR ++ Q + E L L + + ++
Sbjct: 63 FNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG--YTSTWRSLFGLF 120
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
S +K + +E VG+ + + S GQ+Q + +ARAL++ K++ DE A++D
Sbjct: 121 SKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDP 180
Query: 1387 QTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
++A + + + + G+TVI H++ D I+ L G +V
Sbjct: 181 ESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
|
Length = 258 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 31/212 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L+ +SL + G +A++G G GK++LL I G G I G
Sbjct: 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERR 72
Query: 669 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
+I V Q P + T+ +NI FG + ++ V + ++
Sbjct: 73 NIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN---R 126
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQ 780
Y E LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R L + L
Sbjct: 127 YPHE----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKL-REELREELKELQRELG 181
Query: 781 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIG 811
T I TH+ + A++ AD + VM++G++ +G
Sbjct: 182 ITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 7e-24
Identities = 68/229 (29%), Positives = 101/229 (44%), Gaps = 35/229 (15%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1276
+IEF NV+ Y AALHD++ I G + + G +GAGK+++L L+ LTP GQ
Sbjct: 1 MIEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-SRGQ 58
Query: 1277 ILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS------ 1327
+ + G ++ R LR R VV Q F + D ++
Sbjct: 59 VRIAGEDVNRLRGRQLPLLRRRIGVVFQD--------------FRLLPDRTVYENVALPL 104
Query: 1328 -VLEKC------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
V K V + VGLE S G++Q + +ARA++ S +L DE
Sbjct: 105 EVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP 164
Query: 1381 TANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHG 1427
T N+D + IL +G TVI H +S V + ++ILD G
Sbjct: 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-23
Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 16/215 (7%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 664
+ + L V+ L G ++ + G GSGKS+LL+ I ++ G I
Sbjct: 325 QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL 384
Query: 665 -HASGSIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+A V Q P++ S T+ +NI G+ + Q + ++ DI + G
Sbjct: 385 DSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTE 444
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+GE+GV LSGGQ+ R+++ARA+ ++I +LDD LSAVD + IL N +T
Sbjct: 445 VGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRT 502
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817
I+ H + A++ A ++VM G + G+ LA
Sbjct: 503 VIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 1218 LIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268
L+ +N++ RY A+ D++F + G +G+VG +G+GKS++ L
Sbjct: 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339
Query: 1269 LTPICGGQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHM 1319
L P G I+ DG ++ T +R LR R +V Q P+ SL D L +P +
Sbjct: 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY---SSLNPRMTVGDILAEPLRI 396
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
+ + V E +E VGL F+ S GQRQ + +ARAL K+L LD
Sbjct: 397 HGGGS--GAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 1379 ECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
E + +D AQ ++L++ G+T + I+H ++ V + D + ++ G +V
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEEL--GLTYLFISHDLAVVRYIADRVAVMYDGRIV 509
|
Length = 539 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 2e-23
Identities = 64/225 (28%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 1218 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+IE +NV+ Y AL D+N IE G V IVG +G+GKS++LN L L G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 1276 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1329
++L++G ++ ++L R + V Q+ L ++ +N++ P +
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA----- 115
Query: 1330 EKCHVKEE--VEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ E +E +GLE + + S S GQ+Q + +ARAL+ + K++ DE T N+D+
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 1387 QTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1429
+TA + + K G T+I + H D ++ L G +
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 63/230 (27%), Positives = 106/230 (46%), Gaps = 24/230 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ Y P+ AL D++ +I G V ++G +GAGKS++L L L G +L
Sbjct: 1 IEVENLSKTY-PNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 1279 VDGLNIINTP---VRDLRGRFAVVPQSPFLFE----------GSL--RDNLDPFHMNDDL 1323
+DG +I +R LR + ++ Q L E G L R
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSL-----F 114
Query: 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
++ EK +E VGL + S GQ+Q + +ARAL++ K++ DE A+
Sbjct: 115 GLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVAS 174
Query: 1384 VDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLV 1430
+D ++ + + + +G+TVI H++ D I+ L G +V
Sbjct: 175 LDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-23
Identities = 59/206 (28%), Positives = 109/206 (52%), Gaps = 17/206 (8%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAY 672
++ LP G +A++G G+GK+SLLN++LG + GS+ +G +++
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSW 427
Query: 673 VPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731
V Q P + GT+RDN+L G + + + L+ + + L+ G IG++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 791
GQ RLALARA+ + +LD+ +++DA + ++ A+ ++T ++ TH ++
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQ-ALN-AASRRQTTLMVTHQLE 545
Query: 792 AISAADMVVVMDKGQVKWIGSSADLA 817
++ D + VM GQ+ G A+L+
Sbjct: 546 DLAQWDQIWVMQDGQIVQQGDYAELS 571
|
Length = 588 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 4e-23
Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 39/231 (16%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +N+ Y S L ++ T+ G V ++GR GAGK+++L + L P G I
Sbjct: 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 1279 VDGLNIINTPVRDL--RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
DG +I P + G VP+ +F ++ +NL L + K
Sbjct: 59 FDGRDITGLPPHERARAG-IGYVPEGRRIFPELTVEENL--------LLGAYARRRAKRK 109
Query: 1336 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA-- 1382
+E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 110 ARLERV-YELFPRLKERRKQLAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSEGL 163
Query: 1383 --NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ + ++ + E G+T++ + L + D +L+ G +V
Sbjct: 164 APKIVEEIFEAIR-ELRDE--GVTILLVEQNARFALEIADRAYVLERGRVV 211
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 7e-23
Identities = 63/207 (30%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SI 670
+ VL VS + G +A++G G+GKS+LL +ILG + T GSI G I
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRI 70
Query: 671 AYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY--I 723
YVPQ + ++RD +L G + KA VD +L VG ++A I
Sbjct: 71 GYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI 130
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
GE LSGGQ+ R+ LARA+ D+ +LD+ + VD + I + T
Sbjct: 131 GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE-LLRELRREGMTI 185
Query: 784 ILCTHNVQAISA-ADMVVVMDKGQVKW 809
++ TH++ + D V+++++ V
Sbjct: 186 LVVTHDLGLVLEYFDRVLLLNRTVVAS 212
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 8e-23
Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 12/220 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE + +T + L ++ + G + I+G +G+GKS++L + L G++L
Sbjct: 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 1279 VDGLNI---INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCH 1333
+DG +I + LR R ++ QS LF+ ++ +N+ P + L + E
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-- 116
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V E++EAVGL S G ++ + LARAL ++L DE TA +D + ++
Sbjct: 117 VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1394 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ I S + G+T I + H + T + D I +L G +V
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV 216
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-22
Identities = 66/212 (31%), Positives = 112/212 (52%), Gaps = 22/212 (10%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L+ ++L + G VA++G G+GKS+L +L G I G
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 669 SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETL----KACTLDVDISLMVGGDMAYIG 724
+A VPQ P + + ++ +NI +G+ P + E + +A IS + G Y+G
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR---PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
E+GV LSGGQR R+A+ARA+ + I +LD+ SA+DA+ + ++ A+ M +T +
Sbjct: 472 ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE-SEQLVQQALETL-MKGRTTL 529
Query: 785 LCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+ H + + AD +VVMD+G++ G+ A+L
Sbjct: 530 IIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-22
Identities = 54/200 (27%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
VL VS L G + A++G GSGKS+++ + G + G
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88
Query: 670 -IAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
++ V Q P + + +++DNI +G + E + IS + G +GEKG
Sbjct: 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG 148
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ + + A+ ++T ++
Sbjct: 149 SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE-SEQQVQQALYDWPE-RRTVLVIA 206
Query: 788 HNVQAISAADMVVVMDKGQV 807
H + + AD ++V+D G++
Sbjct: 207 HRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 48/222 (21%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------ 668
L +SL + +G VA++G G GKS+LL I G T G + G
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGP 71
Query: 669 --SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSET-------LKACTLDVDISLM 715
YV Q +PW+ T+ DN+ G +E L+ L
Sbjct: 72 GPDRGYVFQQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLS------ 122
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
G + AY + LSGG R R+ALARA+ D+ +LD+ SA+DA + +
Sbjct: 123 -GFENAYPHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDAL------TREQLQ 171
Query: 776 PHML------QKTRILCTHNV-QAISAADMVVVMDK--GQVK 808
+L KT +L TH++ +A+ AD VVV+ G++
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.0 bits (245), Expect = 2e-22
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------I 670
VL ++L + KG VA++G G GKS+LL I G T G + G I
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDI 74
Query: 671 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG----GDMA 721
YV Q +PW+ T+ DN+ G +S +E + ++ L +VG D
Sbjct: 75 GYVFQEDALLPWL---TVLDNVALGLELRGKSKAEA-RERAKEL---LELVGLAGFED-K 126
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
Y + LSGG R R+A+ARA+ + +LD+ A+DA R L + ++ + ++
Sbjct: 127 YPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-REELQDELL--RLWEE 179
Query: 782 TR---ILCTHNVQ-AISAADMVVVMDKG 805
TR +L TH+V A+ AD VVV+
Sbjct: 180 TRKTVLLVTHDVDEAVYLADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-22
Identities = 69/228 (30%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IEF+NV+ RY A+ D+N TIE G + ++G +G+GK++ L + RL G+I
Sbjct: 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DDLKIWSVL 1329
L+DG +I + +LR + V Q LF P H+ L W
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLF---------P-HLTVAENIATVPKLLGWDK- 107
Query: 1330 EKCH--VKEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
E+ E ++ VGL+ + S GQ+Q + +ARAL +L +DE +D
Sbjct: 108 ERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 1386 AQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
T LQ I K G T++ + H I L + D I ++D G +V
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIV 215
|
Length = 309 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-22
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 9/217 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF NVT Y P+ AAL IN +I G V +VG +GAGKS++L +++ G I
Sbjct: 1 IEFINVTKTY-PNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 1279 VDGLNIINTPVRD---LRGRFAVVPQ-SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
V+G ++ + R LR + VV Q L + ++ +N+ F + + K V
Sbjct: 60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENV-AFALEVTGVPPREIRK-RV 117
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E VGL + S G++Q + +ARA++ S +L DE T N+D T + N
Sbjct: 118 PAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMN 177
Query: 1395 AI-SSECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1429
+ G TV+ H V ++ L+ G L
Sbjct: 178 LLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 5e-22
Identities = 115/446 (25%), Positives = 192/446 (43%), Gaps = 67/446 (15%)
Query: 405 ALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIR 464
L LLY V + G+A + + + ++ +A ++ + + + TG ++ ++
Sbjct: 286 LLMLLYDPV-LTLI-GIAFAAINVLALQLVSRRRVDANRRLQQ---DAGKLTGVAISGLQ 340
Query: 465 ---TLKMYGWE-QIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT----- 515
TLK G E FS W + K L+ ++ L PTL +
Sbjct: 341 SIETLKASGLESDFFSRWA----GYQAKLLNAQQELGVLTQIL-GVLPTLLTSLNSALIL 395
Query: 516 -FGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS-E 573
G +M QL M+ +L +S + P+N+ L + + RL L +
Sbjct: 396 VVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455
Query: 574 YKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKG 633
E E+A + S S LS + V +++ T + + E ++ N SL L G
Sbjct: 456 PLLEEEEAPAAGSEPSPRLSGY------VELRNITFGY---SPLEPPLIEN-FSLTLQPG 505
Query: 634 SLVAVIGEVGSGKSS-------LLNSILGEMM--------LTHGSIHASGSIAYVPQVPW 678
VA++G GSGKS+ L GE++ + + + S+A V Q +
Sbjct: 506 QRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL--ANSVAMVDQDIF 563
Query: 679 ILSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGG 733
+ GT+RDN+ +DP L A DV I+ GG A + E G NLSGG
Sbjct: 564 LFEGTVRDNLTL---WDPTIPDADLVRACKDAAIHDV-ITSRPGGYDAELAEGGANLSGG 619
Query: 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNV 790
QR RL +ARA+ I +LD+ SA+D + + I N L++ T I+ H +
Sbjct: 620 QRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN-------LRRRGCTCIIVAHRL 672
Query: 791 QAISAADMVVVMDKGQVKWIGSSADL 816
I D ++V+++G+V G+ +L
Sbjct: 673 STIRDCDEIIVLERGKVVQRGTHEEL 698
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 5e-22
Identities = 69/236 (29%), Positives = 118/236 (50%), Gaps = 20/236 (8%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I+ +N+T Y P AL ++N IE G VG++G TG+GKS++ LN L + T
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-- 60
Query: 1273 CGGQILVDGLNIINTPV--RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSV 1328
G+I++DG++I + V D+R + +V Q P LFE ++ ++ +N L +
Sbjct: 61 -SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEI 119
Query: 1329 LEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ VK + VGL E + +S S GQ++ + +A + K+L LDE TA +D
Sbjct: 120 ENR--VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1387 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVCISFICRYF 1439
+ + N I + MT+I ++H + V + D I++++ G F
Sbjct: 178 KGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233
|
Length = 287 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 7e-22
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 34/219 (15%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L+ VS + G + ++G G+GK++LL + G + T G I G
Sbjct: 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVR 77
Query: 669 -SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMVGGD 719
I YVPQ P + T+R+N+ F K + E L+ L+ + V
Sbjct: 78 RRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT- 136
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 778
LSGG + RL++A A+ H ++ +LD+ S +D + +R + +
Sbjct: 137 ----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE-SRREIWELLRELAKE 185
Query: 779 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T +L TH ++ A D V++++ G++ G+ +L
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEEL 224
|
Length = 293 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 8e-22
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 19/224 (8%)
Query: 1219 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
IE +N++ Y AL ++ +IE G V IVG +G+GKS++LN L L G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 1277 ILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKIWS 1327
+ VDG +I ++L R V QS P L + +N++ P + K
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL---TALENVELPLLLAGVPK-KE 116
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
E+ E +E VGL + S GQ+Q + +ARAL K++ DE T N+D++
Sbjct: 117 RRERAE--ELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSE 174
Query: 1388 TASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1429
T + + K G T++ + H D I+ L G +
Sbjct: 175 TGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 39/233 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE +N++ + L I+ ++E G V I+G +G+GKS++L L L G I
Sbjct: 2 MIEIKNLSKSFGDKE--VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1278 LVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC---- 1332
VDG ++ + + LR + +V Q LF H+ +VLE
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFP----------HL-------TVLENVTLAP 102
Query: 1333 -HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
V K E VGL S GQ+Q + +ARAL KV+ DE
Sbjct: 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 1380 CTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
T+ +D + + + + + GMT+I + H + + D ++ +D G ++
Sbjct: 163 PTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKII 215
|
Length = 240 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 27/230 (11%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1272
+IE +NV+ + + AL D++ ++ G GI+GR+GAGKS+++ N L R T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT-- 58
Query: 1273 CGGQILVDGLNIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWS 1327
G +LVDG ++ +R R R ++ Q L ++ +N+ P L+I
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP------LEIAG 111
Query: 1328 VLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
V K ++E V VGLE S GQ+Q + +ARAL + KVL DE T+
Sbjct: 112 V-PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 1384 VDAQ-TASILQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+D + T SIL + G+T++ I H + V + D + +++ G +V
Sbjct: 171 LDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-21
Identities = 56/189 (29%), Positives = 80/189 (42%), Gaps = 43/189 (22%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
L+ VSL L G +VA++G GSGKS+LL +I G + T G I G +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG-----KDIAK 65
Query: 679 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738
+ +R I Y PQ LSGGQR R+
Sbjct: 66 LPLEELRRRIG----YVPQ--------------------------------LSGGQRQRV 89
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAAD 797
ALARA+ D+ +LD+ S +D +L + +T I+ TH+ A AAD
Sbjct: 90 ALARALLLNPDLLLLDEPTSGLDPASRERLL-ELLRELAEEGRTVIIVTHDPELAELAAD 148
Query: 798 MVVVMDKGQ 806
V+V+ G+
Sbjct: 149 RVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 27/228 (11%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ +E +NV+ + A+ DI+ I+ G V ++G +G GK+++L + G
Sbjct: 3 KPALEIRNVSKSFGDF--TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1329
+IL+DG +I + P + +V QS LF P HM ++ LK+ L
Sbjct: 61 EILLDGEDITDVPPE--KRPIGMVFQSYALF---------P-HMTVEENVAFGLKVRKKL 108
Query: 1330 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+K +K VE VGLE F S GQ+Q + LARAL+ KVL LDE + +D
Sbjct: 109 KKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 1386 AQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
A+ ++ + G+T + + H L M D I +++ G +
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
|
Length = 352 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 2e-21
Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 10/216 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NV + L D+N IE G V ++G +G GKS++L + L G+IL
Sbjct: 4 LELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+DG ++ + P RG A+V Q+ L+ ++ +N+ F + + ++K VKE
Sbjct: 62 IDGRDVTDLPPEK-RGI-AMVFQNYALYPHMTVYENIA-FGLKLRGVPKAEIDK-RVKEV 117
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL--QNA 1395
+ +GLE + + S GQRQ + LARAL++ KV LDE +N+DA+ ++ +
Sbjct: 118 AKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIK 177
Query: 1396 ISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
E G T I + H + + D I++++ G +
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 5e-21
Identities = 56/277 (20%), Positives = 106/277 (38%), Gaps = 11/277 (3%)
Query: 277 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG--YVLAIALGLTSILKSFFDTQ 334
+ LL ++ + PLLL + + L G+G LAI L +L+
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 335 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHD 394
+ +L ++R + + ++ L + ++ S GE+ + ++ D + +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 395 AWSLPFQIGVALYLL--YTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDER 452
+ V +++ Y K V LAI LLI ++ +A + K K +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVL-LAILPLLILLSAVLAKKLRKLNRKEQKAYAKA 179
Query: 453 IRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF---WATTPT 509
E L+ IRT+K +G E+ ++ E + K + F +
Sbjct: 180 GSVAEESLSGIRTVKAFGREEYELE--RYDKALEDAEKAGIKKAITAGLSFGITQLISYL 237
Query: 510 LFSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPL 545
++L FG + ++ L VF L+L L PL
Sbjct: 238 SYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 6e-21
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E ++T Y A+ D++F E G G++G GAGK+++L + L G++
Sbjct: 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVP-QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+DG++ + P +R + V+ + + R+NL F + L K + E
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLS--RKEIKARIAE 116
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+ + L ++ FS G +Q + +ARAL+ +L LDE T+ +D +T + I
Sbjct: 117 LSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176
Query: 1397 SSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ K G VI +H + V + D +++L G +V
Sbjct: 177 -KQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212
|
Length = 245 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPI 1272
+I+ +NV+ Y S AL +++F I G V I+G G+GKS+ IL L +
Sbjct: 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-- 62
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--------------FLFEGSLRDNLDPFH 1318
G+I +DG+ I ++++R + ++ Q+P F E + P
Sbjct: 63 -SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKK 118
Query: 1319 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
M D I + +K VG+E ++ + + S GQ+Q + +A L + +++ D
Sbjct: 119 MKD--IIDDLAKK---------VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD 167
Query: 1379 ECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
E T+ +D + ++ + + + T+I+I H + + D++++ G L+
Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLI 221
|
Length = 271 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 6e-21
Identities = 67/210 (31%), Positives = 109/210 (51%), Gaps = 19/210 (9%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ V+L +P GSLVA++G GSGKS+LL I G G I +G
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK 73
Query: 670 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
I +V Q + T+RDNI FG + + + + ++ + L+ + +G++
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIKARVEELLELV---QLEGLGDRYP 128
Query: 729 N-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
N LSGGQR R+ALARA+ + +LD+ A+DA+V + + S + T + T
Sbjct: 129 NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVT 188
Query: 788 HN-VQAISAADMVVVMDKGQVKWIGSSADL 816
H+ +A+ AD +VVM G+++ IGS ++
Sbjct: 189 HDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 9e-21
Identities = 69/215 (32%), Positives = 102/215 (47%), Gaps = 17/215 (7%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ ++L+ VSL + G VA++G GSGKS+LL +LG GS+ G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+ V Q ++SG+I +NI G E + L DI M G
Sbjct: 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTV 581
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
I E G LSGGQR RL +ARA+ I + D+ SA+D + I+S ++ L+ T
Sbjct: 582 ISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA-IVSESLER---LKVT 637
Query: 783 RILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817
RI+ H + I AD + V+D G+V G+ +L
Sbjct: 638 RIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 1e-20
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 17/210 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L+ +SL + G VA++G GSGKS+L+N I G I G
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 669 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+A V Q + + TI +NI +G+ D L A + + G IGE
Sbjct: 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGEN 466
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
GV LSGGQR RLA+ARA+ + I +LD+ SA+D + R + A + M +T ++
Sbjct: 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLV--QAALERLMQGRTTLVI 524
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL 816
H + I AD +VVMD G++ G+ +L
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNEL 554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-20
Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 669
E++ VL +SL L +G +A++G GSGKS+LL + G++ G I G
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE 70
Query: 670 ------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
I+ + Q P++ T+R+N+
Sbjct: 71 KALSSLISVLNQRPYLFDTTLRNNL----------------------------------- 95
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
G SGG+R RLALAR + + I +LD+ +D R +LS ++ + KT
Sbjct: 96 ---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS--LIFEVLKDKTL 150
Query: 784 ILCTHNVQAISAADMVVVMDKGQVK 808
I TH++ I D ++ ++ G++
Sbjct: 151 IWITHHLTGIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 1e-20
Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T RY AL ++ T+ G G++G GAGK++++ L LTP G I
Sbjct: 1 LQLENLTKRYGKKR--ALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC---HV 1334
+DG +++ P + LR R +PQ ++ ++R+ LD ++ + L+ V
Sbjct: 58 IDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVREFLD--YI-------AWLKGIPSKEV 107
Query: 1335 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
K V E V L K+ S S G R+ + +A+AL+ +L +DE TA +D +
Sbjct: 108 KARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERI 167
Query: 1391 ILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+N +S + VI H + V ++ +++ +L+ G LV
Sbjct: 168 RFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-20
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 8/218 (3%)
Query: 1218 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I +T R++ A+ ++FT++ G G++G GAGK++ L L L G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1334
VDG +++ P + R R V S L++ + R+NL+ F LK + + +
Sbjct: 61 FATVDGFDVVKEP-AEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR--L 117
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E + +G+E + FS G RQ + +ARAL+ VL LDE T +D L+
Sbjct: 118 EELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177
Query: 1395 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
I G ++ H + V + D +++L G +V
Sbjct: 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-20
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 14/128 (10%)
Query: 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPF 1317
S++L + L G IL+DG + R LR R VV Q P LF E ++R+NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1318 HMNDDLK--IWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLARALLKSSKV 1374
+ + LE+ VGL F+ +E + S GQ+Q + +ARALLK K+
Sbjct: 61 LRDKEADARAEEALER---------VGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKL 111
Query: 1375 LCLDECTA 1382
L LDE TA
Sbjct: 112 LLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N+ + L I+ T++ G V I+G +G+GKS++L + L G I+
Sbjct: 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 1279 VDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV-- 1334
+DGL + + + +LR + +V Q LF H+ +VLE +
Sbjct: 59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFP----------HL-------TVLENITLAP 101
Query: 1335 -------KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
K E E VGL S GQ+Q + +ARAL + KV+ DE
Sbjct: 102 IKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161
Query: 1380 CTANVDAQTA-----SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
T+ +D + + A GMT++ + H + + D ++ +D G +
Sbjct: 162 PTSALDPELVGEVLDVMKDLAEE----GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ ++T Y L DI+ ++ G G +G GAGK++ + + L G+I
Sbjct: 1 LKTNDLTKTYGKKR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1335
DG + + R + ++P + NL +L++ + L K +
Sbjct: 59 FDGKSYQKN--IEALRRIGALIEAPGFY-----PNLTARE---NLRLLARLLGIRKKRID 108
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E ++ VGL+ K+ FS+G +Q + +A ALL + +L LDE T +D L+
Sbjct: 109 EVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELREL 168
Query: 1396 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
I S G+TV+ +H +S + + D I I++ G L+
Sbjct: 169 ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 4e-20
Identities = 66/229 (28%), Positives = 104/229 (45%), Gaps = 26/229 (11%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ VL+ ++L + G + ++G GSGKS+L + HG + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL----DVDISLMVGG 718
+ V Q + S +IRDNI +P + + A L D L G
Sbjct: 527 AWLRRQMGVVLQENVLFSRSIRDNIALC---NPGAPFEHVIHAAKLAGAHDFISELPQGY 583
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
+ +GEKG NLSGGQR R+A+ARA+ I + D+ SA+D + I+ N M
Sbjct: 584 NTE-VGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN--MREIC 640
Query: 779 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV--SLYSGFW 825
+T I+ H + + A D ++V++KGQ+ G +L LY+ W
Sbjct: 641 RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLW 689
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 4e-20
Identities = 56/225 (24%), Positives = 95/225 (42%), Gaps = 51/225 (22%)
Query: 1218 LIEFQNVTMRY-------KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
L+E +N+ + K A+ ++F+I+ G +G+VG +G GKS++ + L
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE 63
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+IL +G +I ++ + + E
Sbjct: 64 EPTSGEILFEGKDIT--------------------------------KLSKEER----RE 87
Query: 1331 KCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT- 1388
+ V E +E VGL S GQRQ I +ARAL + K++ DE + +D
Sbjct: 88 R--VLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145
Query: 1389 ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
A IL + E G+T + I+H +S V + D I ++ G +V
Sbjct: 146 AQILNLLKDLQEE-LGLTYLFISHDLSVVRYISDRIAVMYLGKIV 189
|
Length = 268 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 6e-20
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 6/201 (2%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
A+ +NF + G G +G GAGK++ + L L G V G +++ P R +R
Sbjct: 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-RKVRR 66
Query: 1295 RFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
+VPQ + E + R+NL+ L E+ +E +E L +
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP-KDEAEE-RAEELLELFELGEAADRPVGT 124
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRI 1412
+S G R+ + +A +L+ VL LDE T +D +T + + I + + G+T++ H +
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 1413 STVLNM-DEILILDHGHLVCI 1432
+ D I I+DHG ++
Sbjct: 185 EEADKLCDRIAIIDHGRIIAE 205
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 7e-20
Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 35/219 (15%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
VL V+L + G V ++G G GKS+LL I G T G I G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 670 -IAYVPQVPWIL--SGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 719
IA V Q + L T+ +NI FG K + E K L+
Sbjct: 76 GIAMVFQ-NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE---------- 124
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 778
+ K + LSGGQR R+ALARA+ +++LD+ LS +DA++ R ++ + I H
Sbjct: 125 -HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKL-RVLMRSEIKKLHER 182
Query: 779 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T I TH+ V+A++ AD +VVM+ G+++ +G+ +L
Sbjct: 183 LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221
|
Length = 338 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 7e-20
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 32/235 (13%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E +N++ Y P+ AL +IN I G V I+G +GAGKS++L + RL G I
Sbjct: 1 MLEVENLSKVY-PNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1278 LVDGLNIINTPVRDLRG----------RFAVVPQSPFL---------FEGSLRDNLDPFH 1318
L++G +I + LR + ++ + L ++ + R L F
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 1319 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
D + S LE+ VGL + S GQ+Q + +ARAL + ++ D
Sbjct: 120 EEDKERALSALER---------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 1379 ECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
E A++D +T+ + + + K G+TVI H++ D I+ L G +V
Sbjct: 171 EPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 1e-19
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
+L+ +S +PKG + ++G GSGKS+LL + G + G + G
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE 73
Query: 670 ----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL-KACTLDVDISL-MVGGDMAY 722
+AYVPQ P G T+ + +L G+ Y K V+ +L ++G + +
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGR-YPHLGLFGRPSKEDEEIVEEALELLG--LEH 130
Query: 723 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
+ ++ V+ LSGG+R R+ +ARA+ + I +LD+ S +D +L
Sbjct: 131 LADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGL 190
Query: 782 TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 812
T ++ H++ A AD ++++ G++ G+
Sbjct: 191 TVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 2e-19
Identities = 50/204 (24%), Positives = 84/204 (41%), Gaps = 53/204 (25%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
VL+ +SL + G +V ++G G+GKS+LL ++ G + + G I G
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE 70
Query: 670 ----IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
IAYVPQ L+ +A++ +
Sbjct: 71 LARKIAYVPQA--------------------------LELL------------GLAHLAD 92
Query: 726 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
+ N LSGG+R R+ LARA+ I +LD+ S +D +L KT +
Sbjct: 93 RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVV 152
Query: 785 LCTHNV-QAISAADMVVVMDKGQV 807
+ H++ A AD V+++ G++
Sbjct: 153 MVLHDLNLAARYADRVILLKDGRI 176
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 93.9 bits (233), Expect = 4e-19
Identities = 75/270 (27%), Positives = 127/270 (47%), Gaps = 29/270 (10%)
Query: 1169 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEEL----CGYQSLSPDWPFQGLIEFQNV 1224
+++L +SS + VSL+R+ ++ EEL +++ P I N
Sbjct: 590 LNILPMVISSIVQAS---VSLKRLRIFLS--HEELEPDSIERRTIKPGEGNS--ITVHNA 642
Query: 1225 TMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284
T + LP L+ I F+I G V +VG+ G GKSS+L+AL G +
Sbjct: 643 TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV------- 695
Query: 1285 INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--G 1342
++G A VPQ ++ SLR+N+ ++ VLE C + ++E + G
Sbjct: 696 ------HMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG 749
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSE-- 1399
T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA I ++ I E
Sbjct: 750 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGV 809
Query: 1400 CKGMTVITIAHRISTVLNMDEILILDHGHL 1429
K T I + H IS + +D I+++ G +
Sbjct: 810 LKNKTRILVTHGISYLPQVDVIIVMSGGKI 839
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 4e-19
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669
L ++ +P G VA++G GSGKS++ N + + G I G
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQ 418
Query: 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA----CTLDVDISLMVGGDMAYIGE 725
+A V Q + + TI +NI + + + S + +A +D I+ M G IGE
Sbjct: 419 VALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAMDF-INKMDNGLDTVIGE 476
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 783
GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I + A+ LQK R
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA-AL---DELQKNRTS 532
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
++ H + I AD ++V++ G++ G+ A+L
Sbjct: 533 LVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565
|
Length = 582 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 4e-19
Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 43/243 (17%)
Query: 1188 SLERVLEY---MDVPQEELCGYQSLSPDWPFQ----GLIEFQNVTMRYKPSLPAA---LH 1237
+L R+ E+ ++ Q + F I +N+++R P L
Sbjct: 355 TLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLR----TPDGQTLLS 410
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
++NF + G ++ I G +GAGK+S+L AL L P G+I + P
Sbjct: 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI--------SMPADS---ALL 459
Query: 1298 VVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG--- 1351
+PQ P+L +G+LR+ L + D ++ +VL K GL +
Sbjct: 460 FLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKV---------GLGDLAERLDEED 510
Query: 1352 ---ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITI 1408
S G++Q + AR LL K + LDE T+ +D +T L + E TVI++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570
Query: 1409 AHR 1411
HR
Sbjct: 571 GHR 573
|
Length = 604 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 4e-19
Identities = 67/244 (27%), Positives = 114/244 (46%), Gaps = 42/244 (17%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---- 1271
L+E +N+++ + A+ ++F ++ G +GIVG +G+GKS + A+ L P
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 1272 -ICGGQILVDGLNIINTP---VRDLRGR-FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
I GG+IL DG ++++ +R +RG+ A++ Q P +L+P D I
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-------MTSLNPVMTIGDQ-IA 112
Query: 1327 SVLEKCHV---KEEVEAVGLETFVKESGIS------------FSVGQRQLICLARALLKS 1371
VL K+E + +E + GI S G RQ + +A AL +
Sbjct: 113 EVLRLHGKGLSKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALN 171
Query: 1372 SKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDH 1426
K+L DE T +D AQ +L+ + E KG +I I H + V + D + ++
Sbjct: 172 PKLLIADEPTTALDVTVQAQILDLLKE-LQRE-KGTALILITHDLGVVAEIADRVAVMYA 229
Query: 1427 GHLV 1430
G +V
Sbjct: 230 GRIV 233
|
Length = 316 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 85.5 bits (213), Expect = 5e-19
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 35/193 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
+ L+ +SL + KG + ++G G+GK++L+ ILG + G I
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI-------------- 57
Query: 679 ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG---VNLSGGQR 735
+ GK D + E +K I + Y + LSGG +
Sbjct: 58 ---------KVLGK--DIKKEPEEVKR-----RIGYLPEEPSLYENLTVRENLKLSGGMK 101
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 795
RLALA+A+ H ++ +LD+ S +D + R + KT +L +H ++
Sbjct: 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKKEGKTILLSSHILEEAER 160
Query: 796 -ADMVVVMDKGQV 807
D V +++ G++
Sbjct: 161 LCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 6e-19
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 23/208 (11%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668
VL +SL + KG + A+IG G+GKS+LL +ILG + + G I G
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKR 74
Query: 669 -SIAYVPQ---VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDMAY 722
I YVPQ V T++D +L G+ + K VD +L VG D+
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD 134
Query: 723 --IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
IGE LSGGQ+ R+ LARA+ D+ +LD+ + VD + + + +
Sbjct: 135 RQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK-EIYDLLKELRQEG 189
Query: 781 KTRILCTHNVQAISA-ADMVVVMDKGQV 807
KT ++ TH++ + A D V+ +++ +
Sbjct: 190 KTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-18
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMML--------THGSIHA 666
VL ++ L G +VA++G GSGKS+ L G+++L H +H
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555
Query: 667 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQS-YSETLKACTLDVDISLMVGGDMAYIGE 725
+A V Q P + SG++R+NI +G P KA I G +GE
Sbjct: 556 Q--VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR-- 783
KG LSGGQ+ R+A+ARA+ + +LD+ SA+DA+ ++ + +R
Sbjct: 614 KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC------EQLLQESRSRASRTV 667
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+L H + + AD ++V+ KG V +G+ L
Sbjct: 668 LLIAHRLSTVERADQILVLKKGSVVEMGTHKQL 700
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 35/216 (16%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668
L+ ++L + G V ++G G GK++ L I G T G I+ G
Sbjct: 11 GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK 70
Query: 669 --SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
IA V Q P + T+ DNI FG + E ++ A L ++
Sbjct: 71 DRDIAMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE------ 121
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ K LSGGQR R+AL RA+ ++++D+ LS +DA++ R + +
Sbjct: 122 ---HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKL-RVQMRAELKRLQ 177
Query: 778 M-LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 811
L T I TH+ V+A++ AD + VM+ GQ++ IG
Sbjct: 178 QRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (228), Expect = 2e-18
Identities = 102/425 (24%), Positives = 169/425 (39%), Gaps = 92/425 (21%)
Query: 1079 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138
E L G T+ ++ E + KF LY + L A+ SL + ++ FI++ A
Sbjct: 241 EALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI---LKANFMESLHIGMINGFILASYAF 297
Query: 1139 MAVIGSR---GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1195
G+R +L G + I LLG +S F T + L + EY
Sbjct: 298 GFWYGTRIIISDLSNQQPNNDFHG-----GSVISILLGVLISMFMLT----IILPNITEY 348
Query: 1196 MD-----------VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALH-DINFTI 1243
M + ++ L I+F+NV Y ++ D+NFT+
Sbjct: 349 MKSLEATNSLYEIINRKPLVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTL 408
Query: 1244 EGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302
G VG +G GKS+IL + RL P G I+ D N+ + ++ R + VV Q
Sbjct: 409 TEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQD 468
Query: 1303 PFLFEGSLRDNL-------------------DPFHMNDDL-KIWSVLEKC---------- 1332
P LF S+++N+ D ++ K S KC
Sbjct: 469 PLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528
Query: 1333 -------HVKEEVEAV-----------------------GLETFVKESGISFSVGQRQLI 1362
+++ + + ET V + S GQ+Q I
Sbjct: 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRI 588
Query: 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG---MTVITIAHRISTVLNMD 1419
+ARA++++ K+L LDE T+++D ++ ++Q I++ KG I IAHR+ST+ +
Sbjct: 589 SIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN-LKGNENRITIIIAHRLSTIRYAN 647
Query: 1420 EILIL 1424
I +L
Sbjct: 648 TIFVL 652
|
Length = 1466 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 2e-18
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 54/199 (27%)
Query: 1219 IEFQNVTMRYKPSLPAA---LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
IE +N+++ + P L D++F I+ G ++ I G +G GKSS+ AL L P G
Sbjct: 1 IELENLSL----ATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS-VLEKCHV 1334
+I +PQ P+L G+LR+ L + W VL
Sbjct: 57 RI-----------GMPEGEDLLFLPQRPYLPLGTLREQL--------IYPWDDVL----- 92
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
S G++Q + AR LL K + LDE T+ +D ++ L
Sbjct: 93 --------------------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132
Query: 1395 AISSECKGMTVITIAHRIS 1413
+ G+TVI++ HR S
Sbjct: 133 LLKEL--GITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 63/221 (28%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF+NVT RY A++++N I G + ++G +G+GK++ + + RL G+I
Sbjct: 1 IEFENVTKRY-GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDDLKIWSVLE-KCHV 1334
+DG +I +LR + V Q LF ++ +N L P L W + +
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP-----KLLKWPKEKIRERA 114
Query: 1335 KEEVEAVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
E + VGL+ F S GQ+Q + +ARAL +L +DE +D T L
Sbjct: 115 DELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 1393 QNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
Q + G T++ + H I + D I I+ +G +V
Sbjct: 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIV 215
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 42/235 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
+I ++++ RY + AL D++F++ G V IVG G+GKS++ LN L
Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---A 61
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKIWSVLEK 1331
G I V G+ + V D+R + +V Q+P DN F + DD+ LE
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNP--------DN--QFVGATVQDDVAF--GLEN 109
Query: 1332 C---------HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
V + + VG+E F+ S GQ+Q + +A L ++ LDE T+
Sbjct: 110 IGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS 169
Query: 1383 NVDAQ-------TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+D + T L+ KG+TV++I H + D +++++ G ++
Sbjct: 170 MLDPRGRREVLETVRQLKEQ-----KGITVLSITHDLDEAAQADRVIVMNKGEIL 219
|
Length = 279 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 3e-18
Identities = 54/159 (33%), Positives = 94/159 (59%), Gaps = 9/159 (5%)
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH- 1333
G+IL+DG++I + ++DLR F++V Q P LF S+ +N+ +D V C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK--FGKEDATREDVKRACKF 1334
Query: 1334 --VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+ E +E++ +T V G S S GQ+Q I +ARALL+ K+L LDE T+++D+ +
Sbjct: 1335 AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSE 1394
Query: 1390 SILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDH 1426
+++ I + T+ITIAHRI+++ D+I++ ++
Sbjct: 1395 KLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 4e-18
Identities = 66/236 (27%), Positives = 110/236 (46%), Gaps = 41/236 (17%)
Query: 1219 IEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
IE +N++ + AL++++ I G G++G +GAGKS+++ + L G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1277 ILVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMN--------DD--- 1322
+LVDG ++ ++L R + ++ Q H N D+
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQ----------------HFNLLSSRTVFDNVAL 105
Query: 1323 -LKI--WSVLE-KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
L++ E K V E +E VGL S GQ+Q + +ARAL + KVL D
Sbjct: 106 PLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD 165
Query: 1379 ECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
E T+ +D T SIL+ I+ E G+T++ I H + V + D + ++D G LV
Sbjct: 166 EATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLV 220
|
Length = 343 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 5e-18
Identities = 91/330 (27%), Positives = 145/330 (43%), Gaps = 40/330 (12%)
Query: 505 ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRR 564
A+T ++ + G ++ +L V + N LI L+ I F + +
Sbjct: 249 ASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFIT---QIFEARAK 305
Query: 565 LTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLN 624
L F + + E+ A++P L N AV + T + Q V
Sbjct: 306 LEDFFDLEDSVFQREEPADAPE-----LPNVKG---AVEFRHIT---FEFANSSQGV--F 352
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIA 671
VS G VA++G G+GK++L+N + T G I G SIA
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412
Query: 672 YVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729
V Q + + +IR+NI G+ D + Y A D + G D +GE+G
Sbjct: 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD-TLVGERGNR 471
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV-ARWILSNAIMGPHMLQKTR--ILC 786
LSGG+R RLA+ARA+ + I +LD+ SA+D + AR + NAI L+K R +
Sbjct: 472 LSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR--VKNAI---DALRKNRTTFII 526
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL 816
H + + AD+V+ +D+G++ GS +L
Sbjct: 527 AHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 5e-18
Identities = 67/218 (30%), Positives = 108/218 (49%), Gaps = 31/218 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQ 675
V L+ VSL +P G LVA++G GSGK++LL I G G+I A+
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 676 VPWILSG-------TIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMAYIGEK 726
V ++ T+ DN+ FG P+S E + + L+ + ++ ++
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV---QLDWLADR 132
Query: 727 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMGPHML 779
LSGGQR R+ALARA+ + +LD+ A+DA+V RW+ L L
Sbjct: 133 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLH------DEL 186
Query: 780 QKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
T + TH+ +A+ AD VVVM+KG+++ +G+ ++
Sbjct: 187 HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 5e-18
Identities = 66/231 (28%), Positives = 101/231 (43%), Gaps = 21/231 (9%)
Query: 1218 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+I N T + P AL+ ++ I G V ++G GAGKS++LNA+
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS-----LRDNLDPFHMNDDLKIWSVL 1329
GQIL+DG+++ V A V Q P G+ + +NL + S
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSA 118
Query: 1330 E----KCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ +E + + GLE + + S GQRQ + L A L K+L LDE TA
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1384 VDAQTASILQNA---ISSECKGMTVITIAHRISTVLNMDEILI-LDHGHLV 1430
+D +TA + I E K +T + + H + L+ LI L G +V
Sbjct: 179 LDPKTAEFVMELTAKIVEEHK-LTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 6e-18
Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 28/232 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + +T R+ L AL D++F++ G G++G GAGK+++ N + G +L
Sbjct: 1 LEVRGLTKRFG-GL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVL 58
Query: 1279 VDGLNIINTPVRDLRGR-----FAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEK 1331
DG +I P ++ F Q P LF ++ +N+ + +
Sbjct: 59 FDGEDITGLPPHEIARLGIGRTF----QIPRLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 1332 CHVKEEVEA-------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+E E VGL S GQ++ + +ARAL K+L LDE A +
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 1385 D----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVC 1431
+ + A +++ +G+TV+ + H + V+++ D + +LD G ++
Sbjct: 175 NPEETEELAELIRELRE---RGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 7e-18
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 35/205 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL VS + G + ++G G+GKS+L+ ++ + G I G
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 669 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
S+ +PQ P + SGTIR N+ F + D + Y L+ + E G
Sbjct: 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIY-GALR------------------VSEGG 123
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+NLS GQR L LARA+ + +LD+ +++D I + T +
Sbjct: 124 LNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI--QKTIREEFTNSTILTIA 181
Query: 788 HNVQAISAADMVVVMDKGQVKWIGS 812
H ++ I D ++VMD G+VK
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 7e-18
Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 21/226 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
LIE + VT + L ++ + G + I+G +G+GKS++L + L G+I
Sbjct: 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1278 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1333
L+DG +I +L R R V+ Q LF ++ +N+ F + + K+ L +
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENV-AFPLREHTKLPESLIREL 124
Query: 1334 VKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
V ++E VGL + SG G R+ + LARA+ ++L LDE T+ +D
Sbjct: 125 VLMKLELVGLRGAAADLYPSELSG-----GMRKRVALARAIALDPELLFLDEPTSGLDPI 179
Query: 1388 TASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+A ++ I + G+TVI + H + ++L + D + +L G ++
Sbjct: 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225
|
Length = 263 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 8e-18
Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 21/225 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGG 1275
+EF++V+ Y S AL+DI+F+I G+ ++G G+GKS+I +N L
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-------NDDLKIWS 1327
+I VDG+ + V D+R + +V Q+P F G+ + F + + +KI
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI-- 123
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-A 1386
V++ + VG+ ++ + S GQ+Q + +A L K++ LDE T+ +D A
Sbjct: 124 ------VRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 1387 QTASILQNAIS-SECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
IL+ + +TVI+I H I D++L+LD G L+
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLL 222
|
Length = 282 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 8e-18
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 63/218 (28%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + +T R+ + A L ++ ++ G ++G GAGKS+++ L L G+IL
Sbjct: 1 LELRGITKRF-GGVKA-LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
VD G P
Sbjct: 59 VD---------------------------GKEVSFASPRDARR----------------- 74
Query: 1339 EAVGLETFVKESGISF----SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+GI+ SVG+RQ++ +ARAL +++++L LDE TA + L
Sbjct: 75 -----------AGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123
Query: 1395 AISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
I G+ VI I+HR+ V + D + +L G +V
Sbjct: 124 VIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 9e-18
Identities = 62/210 (29%), Positives = 85/210 (40%), Gaps = 65/210 (30%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
Q VLN VSL + G +VA++G GSGKS+LL I G GSI G
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDEL 71
Query: 669 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
I V Q + T+ +NI G
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------- 100
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-----NAIMGPH 777
LSGGQ+ R+ALARA+ D+ +LD+ SA+D R + + A
Sbjct: 101 -------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA----- 148
Query: 778 MLQKTRILCTHNV-QAISAADMVVVMDKGQ 806
L T +L TH++ +A AD VVV+ G+
Sbjct: 149 QLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 9e-18
Identities = 70/233 (30%), Positives = 108/233 (46%), Gaps = 34/233 (14%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1273
IE +++ + Y AL DIN I ++G +G GKS++L L R L P
Sbjct: 8 IEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 1274 GGQILVDGLNI--INTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G++L+DG NI V +LR R +V Q P F S+ DN+ L++ + +K
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNV-----AYGLRLHGIKDK 120
Query: 1332 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ E VE L VK +S + S GQ+Q +C+ARAL +VL +DE T+
Sbjct: 121 -ELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1384 VDAQTASILQNAISSECKGMTVITIAH------RISTVLNMDEILILDHGHLV 1430
+D + ++ I+ K T++ + H R+S D G LV
Sbjct: 180 LDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS-----DYTAFFYLGELV 227
|
Length = 253 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-17
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668
+ N+VL ++L +P VA++G GSGKS+L + ++G LT G I G
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHS 411
Query: 669 ----SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+A V Q P +L+ T N+ G++ + + L+ L + G +G
Sbjct: 412 VLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 783
E+G NLS GQ+ LALAR + I +LD+ + +D+ + I L R
Sbjct: 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI-------QQALAAVRE 524
Query: 784 ----ILCTHNVQAISAADMVVVMDKGQV 807
++ H + I AD ++V+ +GQ
Sbjct: 525 HTTLVVIAHRLSTIVEADTILVLHRGQA 552
|
Length = 592 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 29/221 (13%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------- 669
+ L VSL + KG V +IG GSGKS+LL + G + T G + G
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 670 -------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGD 719
+ V Q P + T+ D + FG ++ + V +VG
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFG----LENLGLPREEIEERVAEALELVG-- 127
Query: 720 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG--P 776
+ + ++ NLSGGQ+ R+A+A + G +I +LD+ + +D + R +L ++
Sbjct: 128 LEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL--ELLKKLK 185
Query: 777 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
KT I+ TH+++ + AD VVV+D G++ G A++
Sbjct: 186 EEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226
|
Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+N++ ++ + L D+N TIE G I+G +G+GKS++LN + L GQ+ ++G
Sbjct: 2 KNISKKFGDKV--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 1282 ---LNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ + R + + Q+ L E ++ +NLD + K S EK K+
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLD---LGLKYKKLSKKEKREKKK 116
Query: 1337 EV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E E VGL +K+ S G++Q + LARA+LK ++ DE T ++D + + +
Sbjct: 117 EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDL 176
Query: 1396 ISSECK-GMTVITIAH 1410
+ G T+I + H
Sbjct: 177 LLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 68/234 (29%), Positives = 108/234 (46%), Gaps = 42/234 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IEF+NV+ + P+ LH+I+ I+ G V I+G +G+GKS++L + +L I G +
Sbjct: 1 MIEFKNVSKHFGPT--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1278 LVDGLNIINTP---VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC-- 1332
+VDGL +N P R +R +V Q +LF H+ + LE
Sbjct: 59 IVDGLK-VNDPKVDERLIRQEAGMVFQQFYLFP----------HL-------TALENVMF 100
Query: 1333 ---HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
V KEE E VGL S GQ+Q + +ARAL K++
Sbjct: 101 GPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160
Query: 1378 DECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVLNMDEILI-LDHGHL 1429
DE T+ +D + +L+ +GMT++ + H I + LI +D G +
Sbjct: 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214
|
Length = 240 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 2e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 44/224 (19%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
++ +SL + KG + ++G G+GK++ L + GE+ T G+ + +G
Sbjct: 14 TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAA 73
Query: 669 --SIAYVPQ---VPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGG 718
S+ Y PQ + L T+R+++ F G +V++ L V G
Sbjct: 74 RQSLGYCPQFDALFDEL--TVREHLRFYARLKGLP---------KSEIKEEVELLLRVLG 122
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
++ LSGG + +L+LA A+ G + +LD+ S +D R I +
Sbjct: 123 LTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD-------L 175
Query: 779 LQKTR-----ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
+ + R IL TH++ A D + +M G+++ IGS +L
Sbjct: 176 ILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 28/231 (12%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPI 1272
I+F+NV Y P P L +I+F +E G+ V +VG TG+GKS+++ NAL + +
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-- 60
Query: 1273 CGGQILVDGLNII----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLD--P--FHMNDD 1322
G I + G +I N ++ LR + ++V Q P LFE ++ +++ P F ++D
Sbjct: 61 -SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSED 119
Query: 1323 LKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
K + ++ VGL E + +S S GQ + + +A + ++LCLDE
Sbjct: 120 EA------KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 1382 ANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
A +D + ++Q + G TVI + H + V D++L+L+HG L+
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLI 224
|
Length = 287 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 2e-17
Identities = 58/233 (24%), Positives = 106/233 (45%), Gaps = 39/233 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E +N++ Y AL ++ +E G V ++GR GAGK+++L + L G+I
Sbjct: 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 1278 LVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEKCH 1333
+ DG +I P R G A VP+ +F ++ +NL + D +
Sbjct: 61 IFDGEDITGLPPHERARLG-IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ------- 112
Query: 1334 VKEEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+ ++E V E F +KE SG G++Q++ +ARAL+ K+L LDE +
Sbjct: 113 -ERDLEEV-YELFPRLKERRNQRAGTLSG-----GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 1383 ----NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ + ++ GMT++ + L + D +L++G +V
Sbjct: 166 GLAPKIVEEIFEAIKELRKEG--GMTILLVEQNARFALEIADRGYVLENGRIV 216
|
Length = 237 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 2e-17
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 26/224 (11%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I F+NV+ +Y+ L D++F I G IVG G+GKS+I + + + G+I
Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGS---------LRDNLDPFHMNDDLKIWS 1327
+ I + LR +V Q+P F GS L ++ P+
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY---------- 116
Query: 1328 VLEKCH--VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
++ H V E ++ V + + S GQ+Q + +A L + V+ LDE T+ +D
Sbjct: 117 --DEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 1386 AQTASILQNAIS--SECKGMTVITIAHRISTVLNMDEILILDHG 1427
L + + +T+I+I H +S + D +++++ G
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 12/214 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE N++ R+ AL D+N + G+ V ++G +G+GKS++L + L G+I
Sbjct: 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
++G + RD + F V Q LF+ ++RDN+ F + + K K V+E
Sbjct: 59 LNGQDATRVHARDRKIGF--VFQHYALFKHLTVRDNI-AFGL-EIRKHPKAKIKARVEEL 114
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN--- 1394
+E V LE S GQRQ + LARAL +VL LDE +DA+ L++
Sbjct: 115 LELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLR 174
Query: 1395 AISSECKGMTVITIAHRISTVLNM-DEILILDHG 1427
+ E TV + H + + D I+++ +G
Sbjct: 175 KLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 3e-17
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 28/230 (12%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + ++ + AL ++ T+ G ++G GAGKS+++ L + P G+I
Sbjct: 8 LLELRGISKSFGGVK--ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1278 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-------------PFHMNDDL 1323
L+DG + ++P L A V Q E SL NL F + D
Sbjct: 66 LIDGKPVAFSSPRDALAAGIATVHQ-----ELSLVPNLSVAENIFLGREPTRRFGLID-- 118
Query: 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ + +E + +GL+ S+ QRQ++ +ARAL ++VL LDE TA
Sbjct: 119 --RKAMRR-RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 1384 VDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVC 1431
+ + L + I + +G+ +I I+HR+ V + D I +L G +V
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225
|
Length = 500 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-17
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 45/218 (20%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L +SL + KG V ++G G GK++LL I G T G+I+ G
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 669 -----SIAYVPQVPWILSGTIRDNI---LFGKNYDPQSYSETLKACTLD-VDISLMVGGD 719
S A P + T+ DNI L + +E + A LD V + G +
Sbjct: 79 GIVFQSYALFPNL------TVADNIAYGLKNRGMGRAEVAERV-AELLDLVGLP---GSE 128
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
Y G+ LSGGQ+ R+ALARA+ + +LD+ LSA+DA+V R L I L
Sbjct: 129 RKYPGQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARV-REHLRTEIRQ---L 180
Query: 780 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS 812
Q+ T I+ TH+ +A+S AD +VVM+ G ++ +G+
Sbjct: 181 QRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-17
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L ++ ++ G+ VG+VG GAGK+++L A+ G +LV G ++ R R
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRR 78
Query: 1296 FAVVPQSPFL-FEGSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1350
A VPQ L FE +R ++ P H + W+ ++ V+ +E G+ F
Sbjct: 79 VASVPQDTSLSFEFDVRQVVEMGRTP-HRSR-FDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1406
S S G+RQ + LARAL +++ VL LDE TA++D +T +++ + G T +
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD---GKTAV 193
Query: 1407 TIAHRISTVLNM-----DEILILDHG 1427
H L++ DE+++L G
Sbjct: 194 AAIHD----LDLAARYCDELVLLADG 215
|
Length = 402 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 26/226 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +NV+ Y + AL ++ I+ G ++G +G GK+++L + G+IL
Sbjct: 1 IELENVSKFYGGFV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-- 1330
+DG +I N P + V Q+ LF P H+ ++ L++ + +
Sbjct: 59 LDGKDITNLPPH--KRPVNTVFQNYALF---------P-HLTVFENIAFGLRLKKLPKAE 106
Query: 1331 -KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
K V E ++ V LE + S GQ+Q + +ARAL+ KVL LDE +D +
Sbjct: 107 IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 1390 SILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+Q + K G+T + + H L M D I +++ G + I
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI 212
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 6e-17
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 33/218 (15%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 664
+ LN +SL + +G V VIG G+GKS+LLN+I G++ T G I
Sbjct: 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSV 75
Query: 665 -HASGSIAYVPQVPWILSG-----TIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVG 717
+ +A V Q P L+G TI +N+ ++ + S L +
Sbjct: 76 AKRANLLARVFQDP--LAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLAR 133
Query: 718 GDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LS 770
+ E ++ LSGGQR L+L A H I +LD+ +A+D + A ++ L+
Sbjct: 134 LGLGL--ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELT 191
Query: 771 NAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 807
I+ H L T ++ THN+ A+ + ++++ G++
Sbjct: 192 AKIVEEHKL--TTLMVTHNMEDALDYGNRLIMLHSGKI 227
|
Length = 263 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 24/225 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NVT R+ AL D+N I G V ++G +G GK++ L + L G+I
Sbjct: 1 VELENVTKRFGNVT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLE---KCHV 1334
+ G ++ + P +D R A+V Q+ L+ ++ DN + LK+ V + V
Sbjct: 59 IGGRDVTDLPPKD-RD-IAMVFQNYALYPHMTVYDN-----IAFGLKLRKVPKDEIDERV 111
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E E + +E + S GQRQ + L RA+++ KV +DE +N+DA+ L+
Sbjct: 112 REVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK----LRV 167
Query: 1395 AISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ +E K G T I + H + M D I +++ G + I
Sbjct: 168 QMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-16
Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 39/222 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
LN VSL + +G + ++GE GSGKS+L + G + GSI G
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 670 --IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ V Q P T+ + + P S++ + ++ VG
Sbjct: 82 RPVQMVFQDPYSSLNPRR----TVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
+++ + LSGGQR R+A+ARA+ + +LD+ SA+D V IL+ + L+
Sbjct: 133 SFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLL----ELK 188
Query: 781 KTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLA 817
K R + +H++ + D + VMD GQ+ IG + +L
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 38/221 (17%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
++ +SL + KG V ++G G GK++LL I G + G I G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 669 SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GDM 720
I V Q S T+ +N+ FG + +KA + L +VG
Sbjct: 78 PIGMVFQ-----SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA---LELVGLEGF 129
Query: 721 A--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
A + LSGGQ+ R+ALARA+ + +LD+ LSA+DA++ R + +
Sbjct: 130 ADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKL-REQMRKELKELQR 184
Query: 779 -LQKTRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 816
L T + TH+ Q A++ +D + VM+ G+++ +G+ ++
Sbjct: 185 ELGITFVYVTHD-QEEALAMSDRIAVMNDGRIEQVGTPEEI 224
|
Length = 352 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 9/181 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + V Y L++I+ ++ G + I G +G GKS++L + L G +
Sbjct: 3 LLELKQV--GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKE 1336
L +G ++ R + + Q+P LF ++ DNL P+ + + ++ +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRR-----PDRAAALD 115
Query: 1337 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ L ++ + ++ S G++Q I L R L K+L LDE T+ +D ++
Sbjct: 116 LLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEM 175
Query: 1396 I 1396
I
Sbjct: 176 I 176
|
Length = 223 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 2e-16
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 53/242 (21%)
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+ +++ D T +W + L S +P GS+ A++G GSGKS+L +++G
Sbjct: 1 MMQQAGIVVNDVTVTW-----RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMG 55
Query: 656 EMMLTHGSIHASGS----------IAYVPQ---VPWILSGTIRDNILFG----------- 691
+ L G I G +AYVPQ V W + D ++ G
Sbjct: 56 FVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA 115
Query: 692 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
K D Q + L VD MV IGE LSGGQ+ R+ LARA+ +
Sbjct: 116 KKRDRQIVTAALAR----VD---MVEFRHRQIGE----LSGGQKKRVFLARAIAQQGQVI 164
Query: 752 MLDDVLSAVDAQVARWILSNAIMGPHMLQ------KTRILCTHNVQAISAADMVVVMDKG 805
+LD+ + VD + I+S +L+ KT ++ THN+ +++ VM KG
Sbjct: 165 LLDEPFTGVDVKTEARIIS-------LLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKG 217
Query: 806 QV 807
V
Sbjct: 218 TV 219
|
Length = 272 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-16
Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 16/219 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS---SILNALFRLTPICGG 1275
+E ++ RY AL D++FT+ G V ++G GAGKS S+L L+ G
Sbjct: 2 LEVAGLSFRYGAR--RALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE---G 56
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPFHMNDDLK-IWSVLEKCH 1333
QI V G ++ P L R VV Q P L + S+R NL +H L + +
Sbjct: 57 QISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLR-YHA--ALHGLSRAEARAR 112
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
+ E + +GL + + G R+ + +ARALL +L LDE T +D + + +
Sbjct: 113 IAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 1394 NAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ + + G++V+ H + + D +++L G ++
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVL 211
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-16
Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 21/225 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+E + +T R+ P + A D++ +++ G ++G GAGKS+++ LF L G+I
Sbjct: 4 ALEMRGITKRF-PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1278 LVDGLNI-INTPVRDLRGRFAVVPQSPFLFEG-SLRDNL-----DPFHMNDDLKIWSVLE 1330
VDG + I +P +R +V Q L ++ +N+ D +
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQ--ARA 119
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA- 1389
+ +KE E GL SVG++Q + + +AL + +++L LDE TA + Q A
Sbjct: 120 R--IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 1390 ---SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
IL+ + G T+I I H++ V+ + D + +L G +V
Sbjct: 178 ELFEILRRLAAE---GKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 3e-16
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 20/193 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINTPV 1289
AL I+ IE + V +G +G GKS+ L R+ + G+I +DG NI + V
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 1290 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV------ 1341
+ +LR +V Q P F S+ +N+ L++ V + +++ VE
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFENV-----AYGLRVNGVKDNAFIRQRVEETLKGAAL 132
Query: 1342 --GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
++ +KES + S GQ+Q +C+ARA+ S VL +DE + +D + + ++ I
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 1400 CKGMTVITIAHRI 1412
K T++ + H +
Sbjct: 193 KKDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 4e-16
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 41/216 (18%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------HASGS---- 669
L+ VS + KG + ++GE GSGKS+L +ILG + T GSI S
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKI 79
Query: 670 ----IAYVPQVPWILSG-----TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q P +S TI + I + + S E K L + + VG
Sbjct: 80 RRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLV--GVGLP 135
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ LSGGQR R+A+ARA+ + + D+ SA+D V IL +L
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL-------DLL 188
Query: 780 QK-------TRILCTHNVQAISA-ADMVVVMDKGQV 807
+K T + TH++ ++ AD V VM G++
Sbjct: 189 KKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-16
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+L +S+ G++ ++G G+GKS+L+ I + T GSI G
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 669 -SIAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I V Q P + GT++DNI +G KN D + Y +VG +
Sbjct: 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS-------------IVGLNKE 123
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
Y NLSGG+ R+++AR + + ++ +LD+ SA+D I + + +
Sbjct: 124 YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL 183
Query: 782 TRILCTHNV-QAISAADMVVVMDKGQV 807
T I THN+ QA D ++KG +
Sbjct: 184 TVIWITHNMEQAKRIGDYTAFLNKGIL 210
|
Length = 241 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 4e-16
Identities = 65/232 (28%), Positives = 107/232 (46%), Gaps = 26/232 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ F +VT R+ L +NF++ G +V ++G +G+GKS+IL L L PI GQI
Sbjct: 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58
Query: 1279 VDGLNIINTP-------------VRDLRGRFAVVPQSPFLF-EGSLRDN--LDPFHMNDD 1322
V+G + + P +R +R + +V QS LF ++ DN P +
Sbjct: 59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--- 115
Query: 1323 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
L + + E ++ VGL S GQ+Q + +ARAL KV+ DE T+
Sbjct: 116 LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTS 175
Query: 1383 NVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+D + + N I +SE +T++ + H + D + D G +V
Sbjct: 176 ALDPELVGEVLNVIRRLASEHD-LTMLLVTHEMGFAREFADRVCFFDKGRIV 226
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 5e-16
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 21/201 (10%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG------------EMMLTHGSIHA-SG 668
L+ +SL + KG V ++G GSGKS+LL + G LT S+
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75
Query: 669 SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ V Q P T+ + + FG E + V+ +L + G
Sbjct: 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEER----VEEALELVGLEGLRDRS 131
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQ+ R+A+A + DI +LD+ + +D R +L + KT I+
Sbjct: 132 PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELL-ELLKKLKAEGKTIIIV 190
Query: 787 THNVQAISA-ADMVVVMDKGQ 806
TH++ + AD V+V++ G+
Sbjct: 191 THDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 23/211 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------SIAYVPQV 676
+ VS +G + ++GE G+GK++LL I ++ G + G ++
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKI 77
Query: 677 PWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+L G T R+N+ F + + +KA ++ L + Y+ +
Sbjct: 78 G-VLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLL---EYLDRRV 131
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
S G + ++A+ARA+ H I +LD+ S +D R + I + I +
Sbjct: 132 GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDI-RTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 788 HNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
H +Q + A D V+V+ KG+V GS L
Sbjct: 191 HIMQEVEALCDRVIVLHKGEVVLEGSIEALD 221
|
Length = 245 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 8e-16
Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 11/219 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
+I +NV+ Y PA L +IN I+ G +GI+G+ G+GKS++ LN L R
Sbjct: 1 MIRLENVSYSYPDGTPA-LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---K 56
Query: 1275 GQILVDGLNIIN-TPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G++LV G++ + + ++ +R +V Q+P F G + D ++L + + +
Sbjct: 57 GKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEE-DLAFGPENLCLPPIEIRK 115
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SI 1391
V + +GLE + S + S GQ Q + LA L + L DE T+ +D + ++
Sbjct: 116 RVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
L+ KG T++ I H + + + D I+++D G +V
Sbjct: 176 LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214
|
Length = 274 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 9e-16
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 33/218 (15%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-MLTHGSIHASGS--- 669
E+ L V+L + G VA++G GSGKS+LLN +LG + T G + +G
Sbjct: 12 GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLT 70
Query: 670 --------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD 711
I +V Q +P T+ +N+ P +
Sbjct: 71 KLSEKELAKLRRKKIGFVFQNFNLLP---DLTVLENVEL-----PLLIAGKSAGRRKRAA 122
Query: 712 ISL--MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 769
L ++G + + +K LSGGQ+ R+A+ARA+ + I + D+ +D++ A+ +L
Sbjct: 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVL 182
Query: 770 SNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
KT I+ TH+ + AD V+ + G++
Sbjct: 183 ELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-15
Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR-----LTPI 1272
LIE +++ Y S AL++INF +++ ++G GAGKS+ LFR L P
Sbjct: 3 LIETRDLCYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKST----LFRHFNGILKP- 56
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G +L+ G I +R++R +V Q+P +F ++ ++ +N L +V
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH 116
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ V + +GLE S G+++ + +A + +VL LDE TA +D Q
Sbjct: 117 R--VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVK 174
Query: 1391 ILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
L + ++ E GMTVI H++ V M D I ++D G +V
Sbjct: 175 ELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV 217
|
Length = 277 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 44/222 (19%)
Query: 1219 IEFQNVTMRYKPSLPAA----LHDINFTIEGGTQVGIVGRTGAGKSSILNAL--FRLTPI 1272
+ F+N+T+ K S + L +++ + G I+G +GAGKS++LNAL R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
G++L++G R R VPQ DD+ +
Sbjct: 64 VSGEVLING---RPLDKRSFRKIIGYVPQ-------------------DDI----LHPTL 97
Query: 1333 HVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V+E + A L G+ S G+R+ + +A L+ + +L LDE T+ +D+ +A
Sbjct: 98 TVRETLMFAAKL------RGL--SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQ 149
Query: 1392 LQNAISSECK-GMTVITIAHRIST-VLNM-DEILILDHGHLV 1430
+ + + G T+I H+ S+ + + D++L+L G ++
Sbjct: 150 VMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 17/190 (8%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1291
AL DIN IE ++G +G GKS+ L R+ G + ++G ++ N V
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNLD---PFHM------NDDLKIWSVLEKCHVKEEVEAVG 1342
LR +V Q P +F S+ +N+ H ++ + L+K + EEV+
Sbjct: 77 LRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK- 135
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402
+K++ ++ S GQ+Q +C+ARAL K+L LDE T+ +D ++ +++ +
Sbjct: 136 ----LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 1403 MTVITIAHRI 1412
+++I + H +
Sbjct: 192 LSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 56/216 (25%), Positives = 104/216 (48%), Gaps = 9/216 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N+ +Y A+ ++F + G G++G GAGK++ + L L G+
Sbjct: 1 IEVENLVKKYGDFE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRAT 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
V G +++ P R++R R +V Q + + + +NL + + + + E
Sbjct: 59 VAGHDVVREP-REVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP-GAERRE-RIDEL 115
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
++ VGL ++S G R+ + +AR+L+ +VL LDE T +D QT + + I
Sbjct: 116 LDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIE 175
Query: 1398 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
E GMT++ H + + D + I+DHG ++
Sbjct: 176 KLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRII 211
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 28/217 (12%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC- 1273
IE +N+ + Y AL +IN I ++G +G GKS++L +L R L P
Sbjct: 1 AIEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1274 -GGQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G++L DG +I + V +LR R +V Q P F S+ DN+ ++ + +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI-----AYGPRLHGIKD 113
Query: 1331 KCHVKEEVEA----VGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
K + E VE L VK+ S + S GQ+Q +C+ARAL +VL LDE T+
Sbjct: 114 KKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAH------RIS 1413
+D ++ I K T++ + H RIS
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS 210
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 19/211 (9%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
L +S + KG V +IG G+GKS+LL I G T G + +G +A L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP----LIELG 97
Query: 682 G------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735
T R+NI + E + ++ + + GD +I + S G
Sbjct: 98 AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAEL--GD--FIDQPVKTYSSGMY 153
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-KTRILCTHNVQAI- 793
ARLA + A + DI +LD+VL+ DA + + + KT +L +H++ AI
Sbjct: 154 ARLAFSVATHVEPDILLLDEVLAVGDAAFQE--KCLERLNELVEKNKTIVLVSHDLGAIK 211
Query: 794 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824
D + ++ GQ++ GS + + Y
Sbjct: 212 QYCDRAIWLEHGQIRMEGSPEE-VIPAYEED 241
|
Length = 249 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 1e-15
Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 21/217 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +N++ R+ A+++I+ T+ + G++G GAGKS++L + + G+I+
Sbjct: 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHV 1334
DG +DL +++ +SP L+E + R+NL D +I VL
Sbjct: 59 FDGHPWTR---KDLHKIGSLI-ESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNI--- 111
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
V L K+ FS+G +Q + +A ALL K+L LDE T +D L+
Sbjct: 112 ------VDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 1395 AISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
I S +G+TVI +H +S V + D I I+ G L
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-15
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 35/206 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+LN +SL + G +A+ G G GKS+LL + + T G++ G
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 670 -IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
++Y Q P + T+ DN++F + D + + L L I
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP-----------DSI 126
Query: 724 GEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
K + LSGG++ R+AL R + I +LD++ SA+D R I ++ ++ ++
Sbjct: 127 LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNI--EEMIHRYVREQN 184
Query: 783 R--ILCTHN-VQAISAADMVVVMDKG 805
+ TH+ QAI AD V+ + G
Sbjct: 185 VAVLWITHDKDQAIRHADKVITLQPG 210
|
Length = 223 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 58/222 (26%), Positives = 112/222 (50%), Gaps = 15/222 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
++E +++ Y P AL INF E G V ++G GAGKS++ N + + T
Sbjct: 1 ILETRDLKYSY-PDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---S 56
Query: 1275 GQILVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G++L+ G + + ++R +V Q+P LF ++ +++ +N L V +
Sbjct: 57 GEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK 116
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ VKE ++AVG+E F + S GQ++ + +A L +++ LDE T+ +D AS
Sbjct: 117 R--VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTV-LNMDEILILDHGHLV 1430
+ + +G+T+I H + V + D++ ++ G ++
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKII 216
|
Length = 275 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 23/206 (11%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------LVDGLNIINTPVRD 1291
I+F + GI G +GAGKS++L + L GG I L D IN P +
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74
Query: 1292 LRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1347
R + +V Q LF ++R+NL N + +I V E ++ +GL+ +
Sbjct: 75 -R-KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRI-------SVDELLDLLGLDHLL 125
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTV 1405
S G++Q + LARAL ++L LDE + +D L + K + V
Sbjct: 126 NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPV 185
Query: 1406 ITIAHRISTVLNM-DEILILDHGHLV 1430
I + H +S + D I++++ G L
Sbjct: 186 IFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 1218 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLT 1270
+I+ +NV+ +Y+ + AL D+N ++ G + I+GR G+GKS+I +NAL L
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL--LI 61
Query: 1271 PICGGQILVDGLNIINTP-VRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMND 1321
P G++ VDGL+ + + D+R + +V Q+P DN D +
Sbjct: 62 P-SEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP--------DNQIVATIVEEDVAFGPE 112
Query: 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
+L I + V E ++ VG+ + + + S GQ+Q + +A L + + DE T
Sbjct: 113 NLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 1382 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLV 1430
A +D + N I K G+T+I I H + + D I+++D G +V
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVV 223
|
Length = 280 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 57/217 (26%), Positives = 87/217 (40%), Gaps = 39/217 (17%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1292
L + ++ G V IVG +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85
Query: 1293 RGR--------FAVVP--------QSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
R R F ++P P G + + K
Sbjct: 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD----------------SRAGAKA 129
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA---SILQ 1393
+EAVGL + S G++Q + LARA VL DE T N+D T + L
Sbjct: 130 LLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
A++ E +G T++ + H D L L G LV
Sbjct: 190 FALNRE-RGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225
|
Length = 228 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 67/229 (29%), Positives = 110/229 (48%), Gaps = 23/229 (10%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I FQ V RY+ P AL+D+N +I G+ V I+G TG+GKS++ LN L + T
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS- 61
Query: 1273 CGGQILVDGLNII-----NTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKI 1325
G + + G +I N ++ LR + +V Q P LFE ++ ++ MN +
Sbjct: 62 --GTVTI-GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSE 118
Query: 1326 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+K +E +E VGL E + S S GQ + + +A L +VL LDE TA +
Sbjct: 119 EDAKQK--AREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 1385 DAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
D + + + KG+T + + H + D+I+++ G +
Sbjct: 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225
|
Length = 290 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (194), Expect = 2e-15
Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 13/231 (5%)
Query: 1209 LSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268
L D+ + E +N Y LHD+N I+ +G +G GKS+ L L +
Sbjct: 71 LKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130
Query: 1269 LTPICGG-----QILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMND 1321
L + G +I G N + + +LR R +V Q P FE S+ DN+ N+
Sbjct: 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCL 1377
+ +LEK V++ +++ L VK+ +G + S GQ+Q +C+ARA+ +VL +
Sbjct: 191 GINDRKILEKI-VEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249
Query: 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1427
DE T+ +D + ++ I K ++I + H ++ + DE + G
Sbjct: 250 DEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300
|
Length = 329 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 3e-15
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 42/222 (18%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668
E+ L VSL + KG VA++G GSGKS+LLN + G T G + G
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISK 70
Query: 669 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
I +V Q +L T +N+ P + K + L+
Sbjct: 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVEL-----PLLLAGVPKKERRERAEELL 125
Query: 716 --VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
VG GD Y E LSGGQ+ R+A+ARA+ + I + D+ +D++ + ++
Sbjct: 126 ERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181
Query: 771 -----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
N G T ++ TH+ + AD ++ + G++
Sbjct: 182 LLRELNKEAG-----TTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-15
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 38/227 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
V+L+ V L +P+G ++A++G GSGKS+LL ILG + G I G
Sbjct: 21 RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
Query: 669 -----SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLM----VG 717
+ + Q + S T+ +N+ F + + E+L ++ LM VG
Sbjct: 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIR-----ELVLMKLELVG 133
Query: 718 --GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
G A Y E LSGG R R+ALARA+ ++ LD+ S +D A I
Sbjct: 134 LRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189
Query: 774 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 819
L T I+ TH++ ++ + AD V V+ G+V G+ +L S
Sbjct: 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 3e-15
Identities = 94/473 (19%), Positives = 177/473 (37%), Gaps = 38/473 (8%)
Query: 969 KVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1028
K+ + + KI++ P+ ++ R+L +SD+ I + + ++ A + LG A
Sbjct: 82 KLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIIL-TLGSAA 140
Query: 1029 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS----RELRRLDSVSRSPIYASFTETLNGS 1084
L+Y+ LL V + + F + R + + + L G
Sbjct: 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETED----KLQNDYQTILEGR 196
Query: 1085 S--TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142
T+ ++E + Y+ + L A S I + +I
Sbjct: 197 KELTLNRERAEYVHNNLYIPDAQEYRHHI---------IRANTFHLLAVNWSNIMLLGLI 247
Query: 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSL---LGNFLSSFTETEKEMVSLERVLEYMDVP 1199
G L + +A + ++ L L + + V+ ++ + P
Sbjct: 248 GLVFWLALSLGWAS-TNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAP 306
Query: 1200 QEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259
+ PDW +E +NV Y+ + + IN TI+ G V ++G G+GK
Sbjct: 307 YKADFPRPQAFPDWK---TLELRNVRFAYQDN-AFHVGPINLTIKRGELVFLIGGNGSGK 362
Query: 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM 1319
S++ L L G+IL+DG + + D R F+ V LF+ L +
Sbjct: 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL--GPEGKAS 420
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
++ W L++ + + S + S GQ++ + L ALL+ +L LDE
Sbjct: 421 PQLIEKW--LQRLELAHKTSLNDGRF----SNLKLSTGQKKRLALLLALLEERDILVLDE 474
Query: 1380 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLV 1430
A+ D + K G T+ I+H ++ D +L + +G L
Sbjct: 475 WAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLS 527
|
Length = 546 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-15
Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 36/220 (16%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ +SL + G LVA++G G+GKS+LL I G G I +G
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 670 ---IAYVPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA- 721
+ +V Q + T+ DNI FG + P + L + L+ +A
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL---LRLVQLEGLAD 132
Query: 722 -YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA----RWILSNAIMGP 776
Y + LSGGQR R+ALARA+ + +LD+ A+DA+V RW+
Sbjct: 133 RYPAQ----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH---- 184
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 815
L T + TH+ +A+ AD VVV+++G+++ +G +
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 64/207 (30%), Positives = 98/207 (47%), Gaps = 22/207 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1273
+E + ++ Y ALHDI+ E ++G +G GKS+ L L R L P
Sbjct: 7 MEARGLSFFYGDFQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 1274 GGQILVDGLNIINT--PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G+IL+DG NI + V +LR R +V Q P F S+ +N+ L++ V +K
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENV-----AYGLRVNGVKDK 119
Query: 1332 CHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
++ E VE L VK ES + S GQ+Q +C+ARAL +VL +DE +
Sbjct: 120 AYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179
Query: 1384 VDAQTASILQNAISSECKGMTVITIAH 1410
+D ++ I T+I + H
Sbjct: 180 LDPIATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 4e-15
Identities = 58/222 (26%), Positives = 93/222 (41%), Gaps = 42/222 (18%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+L VSL +P+G +VA++G G+GK++LL +I+G + GSI G
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74
Query: 670 --IAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY--- 722
I YVP+ I T+ +N+L G L + Y
Sbjct: 75 AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---------------ERVYELF 119
Query: 723 ------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ LSGG++ LA+ARA+ + +LD+ S A + AI
Sbjct: 120 PRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE-PSEGLAPKIVEEIFEAIREL 178
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLA 817
T +L N A+ AD V+++G+V G++A+L
Sbjct: 179 RDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-15
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 18/196 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNI--INT 1287
AL IN IE ++G +G GKS+ L L R L P G++L+DG +I +
Sbjct: 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFV 1347
V LR R +V Q P F S+ DN+ +K L++ V++ ++ L V
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEI-VEKSLKGAALWDEV 136
Query: 1348 KE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGM 1403
K+ S + S GQ+Q +C+ARAL +VL +DE T+ +D + ++ I K
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196
Query: 1404 TVITIAH------RIS 1413
T++ + H RIS
Sbjct: 197 TIVIVTHNMQQASRIS 212
|
Length = 250 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
+N+ YK ++D++ + G VG++G GAGK++ + L G+IL+D
Sbjct: 8 ENLAKSYKKRK--VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 1282 LNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCHVKE 1336
+I P+ R R + +PQ +F ++ DN+ DLK K +
Sbjct: 66 EDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKK--AERKEELDA 122
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+E + S S G+R+ + +ARAL + K + LDE A VD +Q I
Sbjct: 123 LLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182
|
Length = 243 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-15
Identities = 73/222 (32%), Positives = 107/222 (48%), Gaps = 41/222 (18%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI----------- 670
VLN +SL +P G +VA++G GSGK++LL I G L H SG I
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG---LEH---QTSGHIRFHGTDVSRLH 70
Query: 671 AYVPQVPWILSG-------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDMAY 722
A +V ++ T+ DNI FG P+ A V L MV +A+
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV--QLAH 128
Query: 723 IGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWI--LSNAIMG 775
+ ++ LSGGQ+ R+ALARA+ I +LD+ A+DAQV RW+ L
Sbjct: 129 LADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE--- 185
Query: 776 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L+ T + TH+ + A+ AD VVVM +G ++ G+ +
Sbjct: 186 ---LKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
++ V+L + +G + +IG GSGK++ L I + T G I G
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75
Query: 669 SIAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I YV Q P + T+ +NI +D + + + +VG D +
Sbjct: 76 KIGYVIQQIGLFPHL---TVAENIATVPKLLGWDKERIKKRADE------LLDLVGLDPS 126
Query: 722 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-ML 779
++ + LSGGQ+ R+ +ARA+ I ++D+ A+D + R L I L
Sbjct: 127 EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP-ITRKQLQEEIKELQKEL 185
Query: 780 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
KT + TH++ A+ AD + VMD G++ + ++
Sbjct: 186 GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEI 223
|
Length = 309 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 7e-15
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 23/212 (10%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP----Q 675
V L+ VSL + +G ++G G GK++LL I G T G I G I +P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRP 73
Query: 676 VPWILSG-------TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
V + T+ +NI FG K E + LD +V + Y
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE-ALD-----LVQLE-GYANR 126
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
K LSGGQ+ R+A+ARA+ + + +LD+ L A+D ++ + + L T +
Sbjct: 127 KPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186
Query: 786 CTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
TH+ + A++ +D + VM+KG+++ IG+ ++
Sbjct: 187 VTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 7e-15
Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1272
++E +++++ Y A++DI+ IE ++G +G GKS+ L ++ R+ +
Sbjct: 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1273 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+IL +GLNI+ N V +LR +V Q P F S+ +N+ + SVL+
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 1331 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ V+E + L VK S +S S GQ+Q +C+AR L VL LDE + +D
Sbjct: 139 EI-VEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ + ++ I+ + ++I + H + L + D +G LV
Sbjct: 198 ISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLV 242
|
Length = 268 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 9e-15
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 7/221 (3%)
Query: 1218 LIEFQNVTMRYKPSLPA-ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
+IE +N+T +YK L+D++F ++ G + I+G G+GKS+ + + L GQ
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1334
I++DG + V D+R + +V Q+P F G+ ++ F + N + + E+ V
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER--V 121
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
E +E VG++ F + S GQ+Q + +A A+ K++ LDE T+ +D + L
Sbjct: 122 NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIK 181
Query: 1395 AISS--ECKGMTVITIAHRISTVLNMDEILILDHGHLVCIS 1433
I + MTVI+I H + V D +L++ +G + S
Sbjct: 182 TIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTS 222
|
Length = 279 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 33/222 (14%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------ 664
+N L VS + +G VA++G GSGKS++ + G + G I
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL 78
Query: 665 -HASGSIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGG 718
I + Q P + T+ D+I FG K P+ + + V +
Sbjct: 79 KEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME----- 133
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
Y+ ++ NLSGGQ+ R+A+A + +I + D+ S +D + R I IM
Sbjct: 134 --DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK--IM--VD 187
Query: 779 LQKTR----ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
L+KTR I TH++ AD V+V +G++ G ++
Sbjct: 188 LRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
|
Length = 271 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +NV+ R+ A L D++ I G V ++G +G+GK+++L + L G IL
Sbjct: 3 IEVRNVSKRF-GDFVA-LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE------- 1330
G + + PV++ F V Q LF ++ DN+ F L++ E
Sbjct: 61 FGGEDATDVPVQERNVGF--VFQHYALFRHMTVFDNV-AF----GLRVKPRSERPPEAEI 113
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ V E ++ V L+ S GQRQ + LARAL KVL LDE +DA+
Sbjct: 114 RAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 173
Query: 1391 ILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
L+ + + +T + + H L + D +++++ G +
Sbjct: 174 ELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 26/208 (12%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L +++ +E G I+G TG+GKS +L + G+IL++G +I N P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMND------DLKIWSVLEKCHVKEEV----EAVGLET 1345
+ VPQ+ LF HM LK V +K ++ +V E +G++
Sbjct: 73 ISYVPQNYALFP----------HMTVYKNIAYGLKKRKV-DKKEIERKVLEIAEMLGIDH 121
Query: 1346 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GM 1403
+ + S G++Q + +ARAL+ + K+L LDE + +D +T L+ + K G+
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
Query: 1404 TVITIAHRISTVLNM-DEILILDHGHLV 1430
TV+ + H + D++ I+ +G L+
Sbjct: 182 TVLHVTHDFEEAWALADKVAIMLNGKLI 209
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 63/220 (28%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1276
+ +V Y LP + T+ G V I+G +GAGKS++LN A F TP G+
Sbjct: 2 LALDDVRFSYG-HLPMRF---DLTVPAGEIVAILGPSGAGKSTLLNLIAGF-ETPA-SGE 55
Query: 1277 ILVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHV 1334
IL++G++ +P + R +++ Q LF ++ N+ ++ LK+ + ++ V
Sbjct: 56 ILINGVDHTASPPAE---RPVSMLFQENNLFAHLTVAQNIG-LGLSPGLKL-NAEQREKV 110
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ 1393
+ VGL F+K S GQRQ + LAR L++ +L LDE + +D A A +L
Sbjct: 111 EAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLA 170
Query: 1394 --NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
+ + E + MT++ + H D ++ LD+G +
Sbjct: 171 LVSQLCDE-RKMTLLMVTHHPEDAARIADRVVFLDNGRIA 209
|
Length = 231 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICGGQILVDG--LNI 1284
P P L +NF E G + ++G GAGKS++ LN L R G +L+DG L+
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDY 58
Query: 1285 INTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1342
+ + R R +V Q P LF + ++ +N L V + V+E + AVG
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR--VREALTAVG 116
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISS 1398
+ S G+++ + +A A+ VL LDE TA +D Q +IL+ +
Sbjct: 117 ASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1399 ECKGMTVITIAHRI 1412
GMTV+ H +
Sbjct: 177 ---GMTVVISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (185), Expect = 1e-14
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 18/227 (7%)
Query: 1218 LIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+I+F+ V Y+P+ P AL DI+ ++ G+ ++G TG+GKS++L L L
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 1275 GQILVDGLNIINT-------PVRDLRGRFAVVPQSPFLFEGSLRD-NLDPFHMNDDLKIW 1326
G++ V + + +T PVR G P+S E L+D P + I
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP----QNFGIP 116
Query: 1327 SVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ E++E VGL + F ++S S GQ + + +A L +VL LDE TA +D
Sbjct: 117 KEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 1386 AQTASILQNAISS-ECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
+ + S G TV+ + H + V + D + +L+ GH++
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
Length = 288 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 38/214 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 672
L +SL +PKG + A+IG G GKS+LL +L + G +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 673 ------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
V Q P G+I DN+ +G E L V+ +L
Sbjct: 74 VDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE---RVEEAL----RK 126
Query: 721 AYIGE------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
A + + + LSGGQ+ RL LARA+ + ++ +LD+ SA+D ++ + I
Sbjct: 127 AALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-ISTAKIEELIA 185
Query: 775 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 807
+ T ++ THN+ QA AD + G++
Sbjct: 186 ELKK-EYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 3e-14
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 17/207 (8%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI-----LVDGLNIINTP 1288
A L +IN I G IVG+ G GKSS+L A+ G++ + T
Sbjct: 15 ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATR 74
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GL 1343
R+ R A Q P+L ++ +N+ PF+ + +V + C ++ +++ + G
Sbjct: 75 SRN-RYSVAYAAQKPWLLNATVEENITFGSPFNKQ---RYKAVTDACSLQPDIDLLPFGD 130
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISS--EC 1400
+T + E GI+ S GQRQ IC+ARAL +++ ++ LD+ + +D + ++Q I +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 1401 KGMTVITIAHRISTVLNMDEILILDHG 1427
T++ + H++ + + D I+ + G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 3e-14
Identities = 58/213 (27%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--------------LGEMMLTHGSIH 665
N VL+ +SL + G L+A+IG+ G GK++LL +I + + LTH H
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 666 ASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
G + DN+ FG ++ + + + + GD A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGL--GDAAA--H 133
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
LSGG + R+A+ARA+ D+ +LD+ LSA+DA + + L + IL
Sbjct: 134 LPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTIL 193
Query: 786 C-THN-VQAISAADMVVVMDKGQVKWIGSSADL 816
C TH+ A++ AD +M G++ G L
Sbjct: 194 CVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 3e-14
Identities = 103/514 (20%), Positives = 181/514 (35%), Gaps = 40/514 (7%)
Query: 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRIL 995
F LC+ + + A+ + + L KI+ AP+ D+ ++
Sbjct: 57 FSFGGLCLLALLFR---IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLI 113
Query: 996 NRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1055
+ D+ I+ L I +A + IA L+Y+ V + + I + Q
Sbjct: 114 PLLTHDIDQINAFLFIFPPIAIALAIFFFCIAY-LAYLSVPMFAITISAIIIGTAAQLLA 172
Query: 1056 RSTSRELRRLDSVSRSPIYASFTETLNGSSTIR--AFKSEDYFMAKFKEHVVLYQRTSYS 1113
+ G+ ++ + + +E
Sbjct: 173 FMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232
Query: 1114 ELTASLWLSLRL---QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1170
E+ L QLL +I A + + + A S V L P+
Sbjct: 233 EI---LIFIAAENFGQLLFFLLIGCALFAAAMFASID-AAAIS--AFVLALLYIKGPLEM 286
Query: 1171 LLGNFLSSFTETEKEMVSLERVLEY---MDVPQEELC-----GYQSLSPDWPFQGLIEFQ 1222
L+ S+ + ++ +R+ ++ + P+ EL L+ D IE +
Sbjct: 287 LV----SALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV-DSIELK 341
Query: 1223 NVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
+V M K S AL I+ I G V IVG G GKS++ L G+IL+
Sbjct: 342 DVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW-SVLEKCHVKEEV 1338
DG + D R F+ + LF+ + + D+ + + LE K ++
Sbjct: 402 DGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKI 460
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
E G T + S GQ++ + L A L+ +L DE A+ D +
Sbjct: 461 EDGGFSTTT-----ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1399 ECK--GMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ K G T+I I+H D+I+ L G +V
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 3e-14
Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 681
L + G +VA++G G+GKS+LLN I G + GSI +G Y V +
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 682 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 730
T+R NI G + LK VD + VG Y+ L
Sbjct: 78 ENNLFAHLTVRQNIGLGLH-------PGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQL 129
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790
SGGQR R+ALAR + + I +LD+ SA+D + +L+ Q+T ++ TH++
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 791 Q-AISAADMVVVMDKGQVKWIG 811
A + A + V+ +G++K +
Sbjct: 190 SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-14
Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 33/217 (15%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN---TPVRD 1291
A+ I+ T+ G +G+VG +G+GKS++ AL RL P G+I DG +I +R
Sbjct: 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-SQGEIRFDGQDIDGLSRKEMRP 360
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNL-------DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL 1343
LR R VV Q P+ GSL + + +++ S E+ V E +E VGL
Sbjct: 361 LRRRMQVVFQDPY---GSLSPRMTVGQIIEEGLRVHE--PKLSAAERDQRVIEALEEVGL 415
Query: 1344 -----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQN 1394
+ E FS GQRQ I +ARAL+ +++ LDE T+ +D AQ +L++
Sbjct: 416 DPATRNRYPHE----FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471
Query: 1395 AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ G++ + I+H ++ V + ++++ G +V
Sbjct: 472 L--QQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV 506
|
Length = 534 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 3e-14
Identities = 51/195 (26%), Positives = 79/195 (40%), Gaps = 21/195 (10%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1282
N++ YK L D++ + G + + G+ GAGK+++ L L G IL++G
Sbjct: 4 NISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 1283 NIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
I ++ R V Q LF S+R+ L D E+ E
Sbjct: 63 PI---KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAG----------NEQAET 109
Query: 1341 V----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
V L + +S S GQ+Q + +A ALL +L DE T+ +D + + I
Sbjct: 110 VLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169
Query: 1397 SSECK-GMTVITIAH 1410
G VI I H
Sbjct: 170 RELAAQGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 67/228 (29%), Positives = 106/228 (46%), Gaps = 22/228 (9%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
I QNV+ Y+ P AL D+N TIE G+ +G TG+GKS+I+ L L G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1276 QILVDGLNIINTP----VRDLRGRFAVV---PQSPFLFEGSLRD-NLDP--FHMNDDLKI 1325
+ VD I +T ++ +R + +V P+S E L+D P F ++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1326 WSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
EK + VG+ E+ +++ S GQ + + +A L K+L LDE TA +
Sbjct: 123 ALAREKLAL------VGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1385 DAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
D + L GMT++ + H + V N D + +L+ G LV
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
Length = 280 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 41/231 (17%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E N+ + Y S L ++ + G ++GR G GK+++L L L P+ G I +
Sbjct: 2 EVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 1280 DGLNIINTP----VRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
DG +I P R G A VPQ P L ++ +NL + L
Sbjct: 60 DGEDITKLPPHERAR--AG-IAYVPQGREIFPRL---TVEENLL-----------TGLAA 102
Query: 1332 C-----HVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT--- 1381
+ +E+ + L+ + G S GQ+Q + +ARAL+ K+L LDE T
Sbjct: 103 LPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGI 162
Query: 1382 -ANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
++ ++ + +E GM ++ + + + D +++ G +V
Sbjct: 163 QPSIIKDIGRVI-RRLRAE-GGMAILLVEQYLDFARELADRYYVMERGRVV 211
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 3e-14
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 20/203 (9%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
+ T G IVG +G+GKS++LN A F TP G++L++G+++ P D
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-ETP-QSGRVLINGVDVTAAPPADR--- 70
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1350
P S E +L +L ++ LK+ + + ++ + VGL K
Sbjct: 71 ----PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ-AIEVALARVGLAGLEKRL 125
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITI 1408
S G+RQ + LAR L++ VL LDE A +D + + + + MTV+ +
Sbjct: 126 PGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV 185
Query: 1409 AHRISTVLNMDEILI-LDHGHLV 1430
H+ + + ++ LD+G +
Sbjct: 186 THQPEDAKRLAQRVVFLDNGRIA 208
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-14
Identities = 66/227 (29%), Positives = 107/227 (47%), Gaps = 28/227 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+LN +S +P G VA++GE G+GKS++L + + GSI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336
Query: 669 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL----DVDISLMVGGDMAYI 723
+I VPQ + + TI NI +G+ + E A D SL G D +
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRP--DATAEEVGAAAEAAQIHDFIQSLPEGYDTG-V 393
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQK 781
GE+G+ LSGG++ R+A+AR + I +LD+ SA+D + I + +
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR---- 449
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
T ++ H + I AD ++V+D G++ G+ +L A LY+ W
Sbjct: 450 TTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496
|
Length = 497 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 48/226 (21%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L VSL + +G +VA++G G+GK++LL +I+G + G I G
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 669 -SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDM----- 720
IAYVP+ I T+ +N+L G + E D++ ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE------RDLEEVY----ELFPRLK 127
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAIMGP 776
++ LSGG++ LA+ARA+ + +LD+ L+ + ++ I
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI-------- 179
Query: 777 HMLQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLA 817
L+K T +L N + A+ AD V++ G++ G++A+L
Sbjct: 180 KELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
|
Length = 237 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 4e-14
Identities = 67/220 (30%), Positives = 108/220 (49%), Gaps = 41/220 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA-SGSIAYVPQ-- 675
+ VLNQ+ L +P G VAV+G G GKS+LL + G + G + A + +A +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDT 83
Query: 676 ---------VPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+PW + DN+ G + + + L A L D A
Sbjct: 84 RLMFQDARLLPW---KKVIDNVGLGLKGQWRDAAL-QALAAVGL---------ADRA--N 128
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 781
E LSGGQ+ R+ALARA+ H + +LD+ L A+DA + R + + I + Q+
Sbjct: 129 EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-LTRIEMQDLIES--LWQQHGF 185
Query: 782 TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSL 820
T +L TH+V +A++ AD V+++++G++ DL V L
Sbjct: 186 TVLLVTHDVSEAVAMADRVLLIEEGKI-----GLDLTVDL 220
|
Length = 257 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-14
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 66/253 (26%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1276
+I +N+++ Y L +++ T+ G ++G+VGR GAGKS++L L L P G
Sbjct: 3 MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH-- 1333
GL R + Q P L ++ D + + ++ +L +
Sbjct: 61 TRPKGL------------RVGYLSQEPPLDPEKTVLDYV----IEGFGELRELLAELEEA 104
Query: 1334 ------------------------------VKEEVEAVGLETFVKESGISFSVGQRQLIC 1363
+E + +G + S S G R+ +
Sbjct: 105 YALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVS-SLSGGWRRRVA 163
Query: 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAH------RISTVLN 1417
LARALL+ +L LDE T ++D ++ L++ + TVI ++H ++T
Sbjct: 164 LARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG--TVIVVSHDRYFLDNVAT--- 218
Query: 1418 MDEILILDHGHLV 1430
IL LD G L
Sbjct: 219 --HILELDRGKLT 229
|
Length = 530 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 77.3 bits (190), Expect = 5e-14
Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 28/215 (13%)
Query: 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILV 1279
F N ++ P L +I+F +E G + + G TG+GKSS+L + L P G+I
Sbjct: 431 FSNFSLYVTP----VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-SEGKI-- 483
Query: 1280 DGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339
GR + PQ+ ++ G+++DN+ D+ + SV++ C ++E++
Sbjct: 484 -----------KHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIA 532
Query: 1340 AVGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAI 1396
+ T + E GI+ S GQR I LARA+ K + + LD ++D T I ++ +
Sbjct: 533 LFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
Query: 1397 SSECKGM---TVITIAHRISTVLNMDEILILDHGH 1428
CK M T I + ++ + D+IL+L G
Sbjct: 593 ---CKLMSNKTRILVTSKLEHLKKADKILLLHEGV 624
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 5e-14
Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 24/203 (11%)
Query: 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWI 679
G VA++G G+GKS+L+N + G I G +IA V Q +
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 680 LSGTIRDNILFGKNYDPQSYSETL-----KACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734
+ +I DNI G+ P + E + +A D I G +GE+G LSGG+
Sbjct: 421 FNRSIEDNIRVGR---PDATDEEMRAAAERAQAHDF-IERKPDGYDTVVGERGRQLSGGE 476
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
R RLA+ARA+ I +LD+ SA+D + + A + M +T + H + +
Sbjct: 477 RQRLAIARALLKDPPILILDEATSALDVETEAKV--KAALDELMKGRTTFIIAHRLSTVR 534
Query: 795 AADMVVVMDKGQVKWIGSSADLA 817
AD ++V D G+V GS +L
Sbjct: 535 NADRILVFDNGRVVESGSFDELV 557
|
Length = 588 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 22/213 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNI--INT 1287
L DIN I +G +G GKS+ L R+ P C G++ +DG+++ ++T
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH--MNDDLKIWSVLEKCHVKEEVEAVG 1342
V LR + +V Q P F S+ DN+ H + K+ ++EK + +VG
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-----SLTSVG 134
Query: 1343 L----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
L +K+S S GQ+Q +C+ARA+ +L +DE + +D ++++N I
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
K T+I + H + + D + G +V
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIV 227
|
Length = 251 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 13/216 (6%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +NVT R+ AL DI+F++E G G++G GAGK++ + + + G++L
Sbjct: 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
Query: 1279 VDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
DG P+ R R +P+ L+ + D L LK + + E
Sbjct: 59 FDG-----KPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR--IDE 111
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+E + L + + S G +Q + A++ ++L LDE + +D +L++ I
Sbjct: 112 WLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVI 171
Query: 1397 SS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
G TVI H++ V + D +L+L+ G V
Sbjct: 172 RELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 5e-14
Identities = 56/221 (25%), Positives = 94/221 (42%), Gaps = 48/221 (21%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
E + L VS +P+G + +IG G+GKS+LL + G G++ G ++ +
Sbjct: 29 KGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL 88
Query: 674 --------PQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGG 718
P+ L+G R+NI + + E ++ L G
Sbjct: 89 LGLGGGFNPE----LTG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSEL---------G 133
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSN 771
D +I S G +ARLA A A DI ++D+VL+ DA + R +L
Sbjct: 134 D--FIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 772 AIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIG 811
KT IL +H+ +I D +V++KG++++ G
Sbjct: 192 G--------KTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 14/207 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG 1274
++ +N+ + Y AL+DI +I ++G +G GKS++L R L P C
Sbjct: 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 1275 --GQILVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNL--DP-FH-MNDDLKIW 1326
G IL +G NI+++ V LR + +V Q P F S+ +N+ P H + +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+++EK +K ++ + +S +S S GQ+Q +C+AR L + +V+ +DE + +D
Sbjct: 124 TIVEKS-LKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 1387 QTASILQNAISSECKGMTVITIAHRIS 1413
+ +++ I K TVI + H +
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 7e-14
Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 60/243 (24%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------ 669
+ + + VS + G ++ ++GE GSGKS+L +++G +L G SG
Sbjct: 18 DGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMG--LLPEGGRITSGEVILDGR 75
Query: 670 -----------------IAYVPQVPWIL---SGTIRDNI-----LFGKNYDPQSYSETLK 704
IA + Q P TI D I L GK ++ ++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 705 ACTLDVDISLMVGGDMAYIGEKGVN------LSGGQRARLALARAVYHGSDIYMLDDVLS 758
L+ VG + + LSGG R R+ +A A+ + + D+ +
Sbjct: 136 L--LE-----QVG-----LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTT 183
Query: 759 AVDAQVARWILSNAIMGPHMLQKTR----ILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 813
A+D IL + + LQ+ + TH++ ++ AD VVVM KG++ G +
Sbjct: 184 ALDVTTQAQIL-DLLKD---LQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 814 ADL 816
++
Sbjct: 240 EEI 242
|
Length = 539 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 52/232 (22%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
L VSL + G VA+IG G+GKS+LL + G + T GS+ G+
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQ 75
Query: 670 ----IAYVPQ-VPWILSGTIRDNILFGK------------NYDPQSYSETLKACTL--DV 710
I + Q I ++ +N+L G+ + + E +A V
Sbjct: 76 LRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRALAALERV 132
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
+ D AY + LSGGQ+ R+A+ARA+ + + D+ ++++D S
Sbjct: 133 GLL-----DKAYQ--RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDP-----ASS 180
Query: 771 NAIMG-----PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+M T I+ H V A AD +V + G++ + G A+L
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 8e-14
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280
F N+ + P L +IN IE G + I G TG+GK+S+L + G+I
Sbjct: 42 FSNLCLVGAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI--- 94
Query: 1281 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
GR + Q ++ G++++N+ D+ + SV++ C ++E++
Sbjct: 95 ----------KHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITK 144
Query: 1341 VGLE--TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1397
+ T + E GI+ S GQR I LARA+ K + + LD +D T I ++ +
Sbjct: 145 FPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV- 203
Query: 1398 SECKGM---TVITIAHRISTVLNMDEILILDHG 1427
CK M T I + ++ + D+ILIL G
Sbjct: 204 --CKLMANKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 8e-14
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 34/214 (15%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
E N VL +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 14 EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPL 72
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVG---G 718
+ +PQ +I SGT R KN DP + E + +V + ++ G
Sbjct: 73 QKWRKAFGVIPQKVFIFSGTFR------KNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPG 126
Query: 719 DMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYMLDDV---LSAVDAQVARWILSNAIM 774
+ ++ G LS G + + LAR+V + I +LD+ L + QV R L A
Sbjct: 127 QLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFA 186
Query: 775 GPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
T IL H ++A+ +V+++ +V+
Sbjct: 187 DC-----TVILSEHRIEAMLECQRFLVIEENKVR 215
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 9e-14
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 38/222 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
Q+ +L VSL +PKG + V+G G GK++LL +++G + + GSI G
Sbjct: 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE 71
Query: 670 -----IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM----VGGD 719
IAYVPQ I T+ +N+L G L + + + V +
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTG--------LAALPRRSRKIPDEIYELFPVLKE 123
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
M +G +G +LSGGQ+ +LA+ARA+ + +LD+ + + + I I L
Sbjct: 124 M--LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI-GRVIR---RL 177
Query: 780 QKTR----ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ +L + A AD VM++G+V G+ +L
Sbjct: 178 RAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 60/237 (25%), Positives = 104/237 (43%), Gaps = 46/237 (19%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I +NV+ Y + L D++ I G I+G GAGKS++L+ + RL G+I
Sbjct: 1 MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL-------- 1329
+DGL + +TP ++L + +++ Q +N H+N L + ++
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQ----------EN----HINSRLTVRDLVGFGRFPYS 104
Query: 1330 -------EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
++ + E +E + LE S GQRQ +A L + + + LDE
Sbjct: 105 QGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 1383 NVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLV 1430
N+D Q IL+ + G T++ + H I N D I+ L +G +V
Sbjct: 165 NLDMKHSVQIMKILRRLA--DELGKTIVVVLHDI----NFASCYSDHIVALKNGKVV 215
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 10/220 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ + + Y AL IN I+ G I+G GAGKS++ L + G+I
Sbjct: 5 ILKVEELNYNY-SDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1278 LVDG--LNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
L DG ++ + LR +V Q P LF S+ ++ +N L V ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-- 121
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D S +
Sbjct: 122 VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 1394 NAISSECKGM--TVITIAHRISTV-LNMDEILILDHGHLV 1430
+ K + T+I H I V L D + ++ G ++
Sbjct: 182 KLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI 221
|
Length = 283 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-13
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIINTP- 1288
A+ I+ E ++G +G+GKS+ L +L R+ I GQIL G++I N
Sbjct: 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI-NRKE 93
Query: 1289 --VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
V ++R +V Q P F S+ +N+ +K VL++ V+ ++ L
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALWDQ 152
Query: 1347 VKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402
VK+ S ++ S GQ+Q +C+ARA+ +L +DE + +D + L+ + K
Sbjct: 153 VKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
Query: 1403 MTVITIAH------RIS 1413
T+I + H R S
Sbjct: 213 YTIIIVTHNMQQAARAS 229
|
Length = 267 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 66/238 (27%), Positives = 97/238 (40%), Gaps = 26/238 (10%)
Query: 1209 LSPDWPF----QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1264
LS ++P GL N K A+ DI+F I G VG +G GAGKS+ L
Sbjct: 9 LSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLK 68
Query: 1265 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF---EGSLRDN--LDPFHM 1319
L L G++ V+G + P R R + + D LD +
Sbjct: 69 MLTGLLLPTSGKVRVNGKD----PFRR---REEYLRSIGLVMGQKLQLWWDLPALDSLEV 121
Query: 1320 NDDLKIWSVLEKCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375
I+ + + E E + LE F+K S+GQR LA ALL KVL
Sbjct: 122 LK--LIYEIPDD-EFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178
Query: 1376 CLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
LDE T +D + ++ + + TV+ H + + D +L++D G LV
Sbjct: 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLV 236
|
Length = 325 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-13
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 36/227 (15%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
+ L V+L + +G +VA+IG G+GKS+LL S+ G + T G I +G
Sbjct: 16 GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKE 75
Query: 670 -------IAYVPQVP-WILSGTIRDNILFGK-NYDP--QS----YSETLKACTLD----V 710
I + Q + ++ +N+L G+ Y +S +S+ KA LD V
Sbjct: 76 LRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV 135
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
I D AY + LSGGQ+ R+A+ARA+ I + D+ ++++D + A+ ++
Sbjct: 136 GIL-----DKAYQ--RASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 771 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T I+ H V A AD ++ + G++ + G +++L
Sbjct: 189 ILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 54/230 (23%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
L VSL +PKG + +IG G+GKS+L+ I G T GS+ G
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 669 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 716
I + Q +LS T+ +N+ K + E L+ +V
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLE----------LV 128
Query: 717 G----GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 770
G D AY LSGGQ+ R+ +ARA+ + + + D+ SA+D + + IL+
Sbjct: 129 GLEDKAD-AYPA----QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183
Query: 771 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
N +G T +L TH ++ + D V VM+KG+V G+ ++
Sbjct: 184 RDINRELGL-----TIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
++ +L+ +SL L G ++A+ G+ G+GK++L + G + + GSI +G
Sbjct: 10 KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKER 69
Query: 669 --SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
SI YV Q + + ++R+ +L G L D+
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL--KELDAGNEQAETVLK---------DLDLYA 118
Query: 725 EKGVN---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPH 777
K + LSGGQ+ RLA+A A+ G D+ + D+ S +D +V I A G
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQG-- 176
Query: 778 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 808
K I+ TH+ + ++ D V+++ G +
Sbjct: 177 ---KAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E + ++ R+ A++D++ + G VG++G GAGK+++ N + G +
Sbjct: 4 LLEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVP--QSPFLFEG-SLRDN-LDPFHMNDDLKIWSVL-EKC 1332
+ G +I P R + Q LF G ++ +N H L + +L
Sbjct: 62 IFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLENVAVGAHAR--LGLSGLLGRPR 118
Query: 1333 HVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
KEE EA VGL + S GQ++ + +ARAL K+L LDE A
Sbjct: 119 ARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
Query: 1383 NVDAQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHG 1427
++ + L I + G+T++ I H + V+ + D I++L++G
Sbjct: 179 GLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 24/210 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1274
+E +N+ + Y AL+DIN I ++G +G GKS+ L L R+ +
Sbjct: 5 MESKNLNLWY--GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62
Query: 1275 -GQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI--- 1325
G++L+DG NI + V +LR R +V Q P F S+ DN+ H D K
Sbjct: 63 EGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDK 122
Query: 1326 ---WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
W+ L+K + +EV+ +K+S + S GQ+Q +C+AR + V+ +DE T+
Sbjct: 123 IVEWA-LKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTS 176
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRI 1412
+D + +++ + K T++ + H +
Sbjct: 177 ALDPISTLKIEDLMVELKKEYTIVIVTHNM 206
|
Length = 251 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNII--NTP 1288
L ++N I + ++G +G GKS+ + L R+ + G I +DG++I
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1344
V +LR + +V Q P F S+ DN L +D+ I V+E ++A L
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEER-----VEESLKAAALW 133
Query: 1345 TFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
VK+ S + S GQ+Q +C+AR + S +V+ +DE + +D + + +++ I
Sbjct: 134 DEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK 193
Query: 1401 KGMTVITIAHRI 1412
+ T++ + H +
Sbjct: 194 EDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 57/209 (27%), Positives = 88/209 (42%), Gaps = 44/209 (21%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 675
L VSL + G LV V+G G GK++LLN I G + + GSI +G P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 676 ------VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+PW+ + DN+ FG + + E V + G + YI +
Sbjct: 80 FQNEALLPWL---NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---GAEHKYIWQ- 132
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---------WILSNAIMGPH 777
LSGG R R+ +ARA+ + +LD+ A+DA W +
Sbjct: 133 ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG------ 183
Query: 778 MLQKTRILCTHNV-QAISAADMVVVMDKG 805
K +L TH++ +A+ A +VV+ G
Sbjct: 184 ---KQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 3e-13
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 21/213 (9%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL------NIINT 1287
A L DI I + GI+G +G+GKS++L L RL I +I VDG +I
Sbjct: 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83
Query: 1288 PVRDLRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVG 1342
LR +V Q P F S+ DN L + + +I ++E+C + VG
Sbjct: 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEEC-----LRKVG 138
Query: 1343 LETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
L V + S GQ+Q + +ARAL KVL +DE T+ +D + ++ I+
Sbjct: 139 LWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE 198
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ ++ ++H V + D + L +G LV
Sbjct: 199 LKNEIAIVIVSHNPQQVARVADYVAFLYNGELV 231
|
Length = 257 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 12/186 (6%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTPVR 1290
L +N I T ++G +G+GKS++L RL G++ +DG +I V
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 1291 DLRGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1348
+LR R +V Q P S+ +N+ +N +K L++ V+ +E L VK
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-RVRWALEKAQLWDEVK 137
Query: 1349 ES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
+ S GQ+Q +C+ARAL +VL DE TAN+D + + +++ K MT
Sbjct: 138 DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMT 197
Query: 1405 VITIAH 1410
++ + H
Sbjct: 198 IVLVTH 203
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-13
Identities = 63/241 (26%), Positives = 101/241 (41%), Gaps = 63/241 (26%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL------------ 1266
IE +N+T ++ L +I+FTIE G +GI+GR+GAGKS +++ L
Sbjct: 1 IEVKNLTKKFDGK--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 1267 --FRLT------------------PICGGQ---ILVDGLNIINTPVRDLRGRFAVVPQSP 1303
+ + P+CGG VD N+ + R +R R A++ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 1304 FLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------------VKEEVEAVGLETFVKESG 1351
F G DD + +VLE + +E V L +
Sbjct: 119 FALYG------------DDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIA 1409
S G++Q + LAR L K + DE T +D QTA ++ NA+ K G++++ +
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 1410 H 1410
H
Sbjct: 227 H 227
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-13
Identities = 67/229 (29%), Positives = 103/229 (44%), Gaps = 31/229 (13%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I NV R+ + A L DI+ I+ G V ++G +GAGKS++L + L G+I
Sbjct: 3 IRINNVKKRF-GAFGA-LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 1279 VDG---LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKI-WSV 1328
++G ++ N VRD R + V Q LF HM D+ LK+
Sbjct: 61 LNGRVLFDVSNLAVRD-R-KVGFVFQHYALF----------PHMTVADNIAFGLKVRKER 108
Query: 1329 LE----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ V+E + V LE S GQRQ + LARAL KVL LDE +
Sbjct: 109 PSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 1385 DAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
DA+ L+ + + G+T + + H L + D +++L+ G +
Sbjct: 169 DAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIE 217
|
Length = 345 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-13
Identities = 75/312 (24%), Positives = 130/312 (41%), Gaps = 63/312 (20%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP---- 674
V++ + L + G + ++G G GK+++L I G G I G I +VP
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86
Query: 675 QVPWILSG-------TIRDNILFG--------KNYDPQSYSETLKACTLDVDISLMVGGD 719
V + T+ +N+ FG P+ E L+ L+ +
Sbjct: 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR-VMEALRMVQLE---------E 136
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
A K LSGGQ+ R+A+ARAV + + +LD+ LSA+D ++ R + N + L
Sbjct: 137 FA--QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKL-RKQMQNEL---KAL 190
Query: 780 QK----TRILCTHNV-QAISAADMVVVMDKGQVKWIGS-------SADLAVSLYSGFWST 827
Q+ T + TH+ +A++ +D +VVM G+++ G+ +L V+ + G
Sbjct: 191 QRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIG--EI 248
Query: 828 NEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQ-----------EIIEVEQRK 876
N FD ++ + E R A+ ++ + V EI + E +
Sbjct: 249 NIFDATVIERLDEQRVRANVEGRECNIYVNFAVEPGQKLHVLLRPEDLRVEEINDDEHAE 308
Query: 877 E--GRVELTVYK 886
G V YK
Sbjct: 309 GLIGYVRERNYK 320
|
Length = 375 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-13
Identities = 51/217 (23%), Positives = 99/217 (45%), Gaps = 16/217 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQ 1276
+ V Y+ LP + + G V I+G +GAGKS++LN A F + P G
Sbjct: 1 LALDKVRYEYE-HLPMEF---DLNVADGEIVAIMGPSGAGKSTLLNLIAGF-IEPA-SGS 54
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
I V+ + + +++ Q LF ++R N+ ++ LK+ + ++ V
Sbjct: 55 IKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIG-LGLHPGLKL-NAEQQEKVV 110
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + VG+ ++ S GQRQ + LAR L++ + +L LDE + +D +
Sbjct: 111 DAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLAL 170
Query: 1396 ISSEC--KGMTVITIAHRISTVLNM-DEILILDHGHL 1429
+ C + T++ + H +S + +I ++ G +
Sbjct: 171 VKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 5e-13
Identities = 63/220 (28%), Positives = 101/220 (45%), Gaps = 12/220 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E +N+T + A+ D++ TI G ++G +G GKS++L L GQI
Sbjct: 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76
Query: 1278 LVDGLNIINTP--VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
++DG+++ + P R + F QS LF + F + D K+ V
Sbjct: 77 MLDGVDLSHVPPYQRPINMMF----QSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVN 131
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
E + V ++ F K S GQRQ + LAR+L K K+L LDE +D + +Q
Sbjct: 132 EMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191
Query: 1396 ISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ E G+T + + H + M I I++ G V I
Sbjct: 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI 231
|
Length = 377 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 6e-13
Identities = 57/175 (32%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ + +N+T R+ + + ++N TI+ GT V ++G +G GK+++L + L G
Sbjct: 4 KNFVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61
Query: 1276 QILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLD-PFHMNDDLKIWSVLEK 1331
QI +DG ++ + + RD+ +V QS LF SL +N+ M L + K
Sbjct: 62 QIFIDGEDVTHRSIQQRDI----CMVFQSYALFPHMSLGENVGYGLKM---LGVPKEERK 114
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
VKE +E V L F S GQ+Q + LARAL+ KVL DE +N+DA
Sbjct: 115 QRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 6e-13
Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 28/207 (13%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------- 675
L V+L + +G +++IG G GKS+LLN I G T G + G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 676 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGV 728
+PW+ T+R+NI + S++ + ++ I+L+ + A G+
Sbjct: 61 QNYSLLPWL---TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ--- 114
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 786
LSGG + R+A+ARA+ + +LD+ A+DA + R L +M + ++ R+
Sbjct: 115 -LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-LTRGNLQEELM--QIWEEHRVTVLM 170
Query: 787 -THNV-QAISAADMVVVMDKGQVKWIG 811
TH+V +A+ +D VV++ G IG
Sbjct: 171 VTHDVDEALLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 6e-13
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 638 VIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG--------------T 683
++G G GK++LL + G GSI G V VP L T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE--DVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 684 IRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743
+ +N+ FG +K L+ + L+ + A K LSGGQ+ R+ALARA
Sbjct: 59 VEENVAFGLKMRKVP-RAEIKPRVLEA-LRLVQLEEFA--DRKPHQLSGGQQQRVALARA 114
Query: 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVM 802
+ I +LD+ LSA+D ++ + L T + TH+ +A++ +D + +M
Sbjct: 115 LVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIM 174
Query: 803 DKGQVKWIGSSADL 816
KG++ IG+ ++
Sbjct: 175 RKGKIAQIGTPEEI 188
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 6e-13
Identities = 44/206 (21%), Positives = 79/206 (38%), Gaps = 46/206 (22%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1289
L +N TI+ G ++G G+GKS++ + + +T G+IL G +I + P
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72
Query: 1290 -RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1348
R G F + Q P E+ V F++
Sbjct: 73 ERARLGIF-LAFQYP--------------------------------PEIPGVKNADFLR 99
Query: 1349 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS---SECKGMTV 1405
FS G+++ + + LL + LDE + +D ++ I+ E K + +
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLI 159
Query: 1406 ITIAHRISTVLNMDEILILDHGHLVC 1431
IT R+ + D + +L G +V
Sbjct: 160 ITHYQRLLDYIKPDRVHVLYDGRIVK 185
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 8e-13
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 35/215 (16%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
V L+ VS + G + +IG G+GK++L N I G + T GS+ G
Sbjct: 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIA 73
Query: 670 ---IAYVPQVPWILSG-TIRDNILFG------KNYDPQSYSETLKACTLDVDISL-MVG- 717
I Q+P + T+ +N++ + + L VG
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAI 773
D+A LS GQ+ RL +ARA+ + +LD+ + ++ ++A I
Sbjct: 134 ADLAD--RPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE 191
Query: 774 MGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 807
G T +L H++ + S AD V V+D+G+V
Sbjct: 192 RG-----ITVLLVEHDMDVVMSLADRVTVLDQGRV 221
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 8e-13
Identities = 56/206 (27%), Positives = 100/206 (48%), Gaps = 22/206 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG- 1274
I QNVT+ Y A+ ++ I G ++G +G GKS++L +L R L C
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71
Query: 1275 -GQILVDGLNIINT---PVRDLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1324
G++L DG ++ + PV ++R R +V Q P F S+ +N+ + + + D
Sbjct: 72 KGRVLFDGTDLYDPRVDPV-EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ L K V +E + + ESG S S GQ+Q +C+AR + +V+ +DE + +
Sbjct: 131 VERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSAL 185
Query: 1385 DAQTASILQNAISSECKGMTVITIAH 1410
D + ++ + K T++ + H
Sbjct: 186 DPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 66/202 (32%), Positives = 100/202 (49%), Gaps = 32/202 (15%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTP--ICGGQILVDGLNIINTPV 1289
AL +IN I +G +G GKS++L N ++ L P G+IL+DG NI+ TP
Sbjct: 28 ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENIL-TPK 86
Query: 1290 RD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVG 1342
+D LR + +V Q P F S+ DN+ F ++++ L + + E VE
Sbjct: 87 QDIALLRAKVGMVFQKPTPFPMSIYDNI-AF----GVRLFEKLSRAEMDERVEWALTKAA 141
Query: 1343 LETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA-QTASILQNAIS 1397
L VK+ SG S S GQ+Q +C+AR + +VL LDE + +D T I + +
Sbjct: 142 LWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEE--LI 199
Query: 1398 SECKG-MTVITIAHRISTVLNM 1418
+E K TV+ + H NM
Sbjct: 200 TELKQDYTVVIVTH------NM 215
|
Length = 260 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 1e-12
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSL-------LNSILGEMMLTHGSIHASG- 668
E+ ++VL +++ + G V ++G G+GKSSL S GE+++ +I G
Sbjct: 1296 EDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL 1355
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSE-----TLKACTLDVDISLMVG 717
I +PQ P + SG++R N+ DP YS+ L+ L +S +
Sbjct: 1356 HDLRFKITIIPQDPVLFSGSLRMNL------DPFSQYSDEEVWWALELAHLKTFVSALPD 1409
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
E G NLS GQR + LARA+ + I +LD+ +AVD + I + +
Sbjct: 1410 KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI--QSTIRTQ 1467
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
T + H + I V+V+DKG+V G+ ++L
Sbjct: 1468 FEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNL 1506
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 30/225 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669
L+ VS + G VA++G G+GKS+L + + + G I +G
Sbjct: 16 ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75
Query: 670 IAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+ V Q P + L ++R N+ + + S + ++ + + A +K
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRY--HAALHGLSRAEARARIAELLARLGLAERA--DDKVR 131
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC-- 786
L+GG R R+ +ARA+ H + +LD+ +D I ++ L + + L
Sbjct: 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV----RALARDQGLSVL 187
Query: 787 --THNVQAISAADMVVVMDKGQVKWIGSSADL-----AVSLYSGF 824
TH V I A D +VV+ +G+V G++A+L L + F
Sbjct: 188 WATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGADLEAAF 232
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 13/196 (6%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPWILSGTIR 685
L +G + A++G GSGKS+LLN I G G + +G + P +S +
Sbjct: 18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 686 DNILFG-----KNYDPQSYSETLKACTLD---VDISLMVGGDMAYIGEKGVNLSGGQRAR 737
+N LF +N S LK D ++++L G LSGG+R R
Sbjct: 78 ENNLFAHLTVEQNVG-LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQR 136
Query: 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHNVQAISA- 795
+ALAR + + +LD+ +A+D R + + ++ H K T ++ TH +
Sbjct: 137 VALARVLVRDKPVLLLDEPFAALDP-ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRL 195
Query: 796 ADMVVVMDKGQVKWIG 811
A VV +D G++ G
Sbjct: 196 AQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVP 674
+ ++L +S + +G +A++G G+GKS+LL + GE+ G++ + I Y
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFD 391
Query: 675 Q--VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-L 730
Q T+ + + + D Q L G+ EK V L
Sbjct: 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLG--------RFGFTGEDQ---EKPVGVL 440
Query: 731 SGGQRARLALARAVYHGSDIYMLD 754
SGG++ARL LA+ + ++ +LD
Sbjct: 441 SGGEKARLLLAKLLLQPPNLLLLD 464
|
Length = 530 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-12
Identities = 57/194 (29%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 1251 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL 1310
++G +G GK+++L L G I++DG ++ N P LR +V QS LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP-HLRH-INMVFQSYALFP--- 55
Query: 1311 RDNLDPFHMNDD------LKIWSVLE---KCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361
HM + LK+ V K V E + V LE F S GQ+Q
Sbjct: 56 -------HMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQR 108
Query: 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM- 1418
+ LARAL+ K+L LDE + +D + +Q + + E G+T + + H + M
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1419 DEILILDHGHLVCI 1432
D I I+ G + I
Sbjct: 169 DRIAIMRKGKIAQI 182
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 33/234 (14%)
Query: 1219 IEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I F NV+ Y+ P A+HD+N E G IVG+TG+GKS++ +NAL + T
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT- 61
Query: 1273 CGGQILVDGLNIINTP----VRDLRGRFAVVPQSP--FLFEGSLRDNLD--PFHMNDDLK 1324
G + VD + I + +R +R R +V Q P LFE ++ + P + +L
Sbjct: 62 --GTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLD 119
Query: 1325 IWSVLEKCHVKEEVEAVGLE-----TFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
VK + ++ + +S S GQ + I + L + ++ LDE
Sbjct: 120 --------EVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 1380 CTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
TA +D Q+ + + S + T+I ++H ++ V DE++++ G +V
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-12
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 20/166 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG---SIHASGSIAYVPQVP 677
V++ +S +P G+ + + G G GKSSL ILGE+ +G + A G + YVPQ P
Sbjct: 466 VLIESLSFEVPSGNNLLICGPNGCGKSSLFR-ILGELWPVYGGRLTKPAKGKLFYVPQRP 524
Query: 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAYIGEKGVN------- 729
++ GT+RD I++ P S + + D D ++ + +I E+
Sbjct: 525 YMTLGTLRDQIIY-----PDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW 579
Query: 730 ---LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772
LSGG++ R+A+AR YH +LD+ SAV V ++
Sbjct: 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 59/204 (28%), Positives = 99/204 (48%), Gaps = 17/204 (8%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL +++F + G VG +G GAGKS+ + + P G + V G +++ P +++
Sbjct: 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EVQR 75
Query: 1295 RFAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCHVKEEVEAVGL--ETFV 1347
+P+ +P + +R+ L + M L K V+E +E VGL E
Sbjct: 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLL------KQRVEEMIELVGLRPEQHK 129
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVIT 1407
K + S G RQ + LA+AL+ KVL LDE T +D ++N I + K T+I
Sbjct: 130 KIGQL--SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIIL 187
Query: 1408 IAHRISTVLNM-DEILILDHGHLV 1430
H + V + D ++I++ G +V
Sbjct: 188 STHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-12
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 10/204 (4%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1292
++D + I G I+G +G+GKS+ + L RL GQI +DG NI+ +L
Sbjct: 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 1293 --RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAVGLETFVKE 1349
R + +V Q LF L + +L W E K E ++ VGLE +
Sbjct: 68 VRRKKIGMVFQQFALFPH--MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHR 125
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
S G +Q + LARAL +L +DE + +D +Q+ + T++
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1408 IAHRISTVLNM-DEILILDHGHLV 1430
I H + + + D I+I+ G +V
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIV 209
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 1e-12
Identities = 60/246 (24%), Positives = 96/246 (39%), Gaps = 58/246 (23%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1274
++E +N+++R + L D++ T+ G V I+G GAGKS++L AL G
Sbjct: 2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL------SGE 51
Query: 1275 -----GQILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLK 1324
G++ ++G + + +L R AV+PQ PF E + P
Sbjct: 52 LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP-------- 103
Query: 1325 IWSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALL------KSSKV 1374
+ V A V L S G++Q + LAR L +
Sbjct: 104 -HGLSRA-EDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161
Query: 1375 LCLDECTANVDAQ----TASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILD 1425
L LDE T+ +D + + G+ VI + H LN+ D I++L
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHER--GLAVIVVLHD----LNLAARYADRIVLLH 215
Query: 1426 HGHLVC 1431
G LV
Sbjct: 216 QGRLVA 221
|
Length = 258 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 1e-12
Identities = 54/217 (24%), Positives = 104/217 (47%), Gaps = 26/217 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-----TPICGGQILVDGLNIINTPV 1289
ALH ++ I G V ++G +G+GKS++L L L + ++L +
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 1290 RDLRGRFAVVPQSPFLFEG-------SLRDNL-------DPFHMNDDLKIWSVLEKCHVK 1335
RD+R A + ++F+ S+ +N+ PF ++ +K
Sbjct: 79 RDIRKSRA---NTGYIFQQFNLVNRLSVLENVLIGALGSTPF-WRTCFSWFTREQKQRAL 134
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + VG+ F + + S GQ+Q + +ARAL++ +KV+ DE A++D ++A I+ +
Sbjct: 135 QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194
Query: 1396 IS--SECKGMTVITIAHRISTVLNMDE-ILILDHGHL 1429
+ ++ G+TV+ H++ L E I+ L GH+
Sbjct: 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 54/239 (22%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
+ L+ VSL +PKG + +IG G+GKS+LL I T GS+ G
Sbjct: 11 FGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDL 70
Query: 669 -------------SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACT 707
I + Q +LS T+ +N+ F K Q +E L+
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLE--- 127
Query: 708 LDVDISLMVGGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
+VG + +K LSGGQ+ R+A+ARA+ + I + D+ SA+D +
Sbjct: 128 -------LVG-----LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 764 VARWILS-----NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
+ IL N +G T +L TH ++ + D V V+D+G++ G+ +++
Sbjct: 176 TTQSILELLKDINRELG-----LTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 23/124 (18%)
Query: 647 SSLLNSILGEMMLTHGSIHASG--------------SIAYVPQVPWI-LSGTIRDNILFG 691
S+LL I G + T G+I G I V Q P + T+R+N+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 692 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
+ +A VG E LSGGQ+ R+A+ARA+ +
Sbjct: 61 LRDKEAD-ARAEEALE-------RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLL 112
Query: 752 MLDD 755
+LD+
Sbjct: 113 LLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 58/225 (25%), Positives = 105/225 (46%), Gaps = 15/225 (6%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICG-- 1274
+IE +N + Y A+ ++ I I+G +G GK+++L ++ R+ I G
Sbjct: 3 IIEIENFSAYYGEK--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 1275 --GQILVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+I G +I + V + R + +V Q P F S+ DN+ +K L+
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 1331 KCHVKEEVEAVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ V+E ++ L VK + G S GQ+Q +C+ARAL +V+ LDE T+ +D
Sbjct: 121 RI-VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDP 179
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
++ + + T++ + H I + + D I + G L+
Sbjct: 180 IATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELI 224
|
Length = 250 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 21/212 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTPV 1289
ALH I+ E ++G +G GKS+ L L R+ G+I +G NI + +
Sbjct: 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78
Query: 1290 R--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE------AV 1341
+LR +V Q P F S+ DN+ LKI V +K + + VE A+
Sbjct: 79 DLVELRKEVGMVFQQPTPFPFSVYDNV-----AYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 1342 GLET--FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
ET + + +FS GQ+Q IC+ARAL KV+ LDE T+ +D ++S ++ +
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
T I + H + + D+ L +G L+
Sbjct: 194 KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLI 225
|
Length = 251 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 29/232 (12%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQ 1276
+I +N++ L ++ + G + I+G GAGKS++L AL L+P G+
Sbjct: 1 MIRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-DSGE 57
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQS-----PFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
+ ++G+ + + P +L AV+PQ+ PF + ++ P + ++
Sbjct: 58 VTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGRE----PEEDE 113
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------SSKVLCLDECTANVD 1385
+ + A L + S G++Q + LAR L + S + L LDE T+ +D
Sbjct: 114 RIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 1386 -AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVC 1431
A L+ A +G V+ + H LN+ D I++L G ++
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHD----LNLAAQYADRIVLLHQGRVIA 221
|
Length = 259 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 669
E+++ LN VS + +G +++IG GSGKS+ + I G + G I G
Sbjct: 15 KEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE 74
Query: 670 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q P + T+ D++ FG + E + V+ +L + G
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER----VNEALELVGM 130
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG-PHM 778
+ + LSGGQ+ R+A+A AV I +LD+ S +D + R L I G
Sbjct: 131 QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE-GRLELIKTIKGIRDD 189
Query: 779 LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
Q T I TH++ ++ +D V+VM GQV+ + +L
Sbjct: 190 YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 3e-12
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 35/222 (15%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPV 1289
A+ I+F IE G + +VG +G+GKS ++ L P G IL DG +++
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 1290 RDLRG----RFAVVPQSPFLFEGSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEA 1340
R LRG + ++ Q P +L+P H + + L++ L + +
Sbjct: 85 RQLRGVRGNKIGMIFQEPMT-------SLNPLHTIGKQLAEVLRLHRGLSRAAARARALE 137
Query: 1341 ----VGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1389
VG+ E + S GQRQ + +A AL +L DE T +D AQ
Sbjct: 138 LLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+L+ + +E GM ++ I H + V D + ++ HG +V
Sbjct: 198 DLLKE-LQAE-LGMAILFITHDLGIVRKFADRVYVMQHGEIV 237
|
Length = 534 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 4e-12
Identities = 56/231 (24%), Positives = 95/231 (41%), Gaps = 53/231 (22%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
VL V L + +G ++A+IG GSGKS+LL I+G + G + G
Sbjct: 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL 72
Query: 670 ------IAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG 717
+ + Q SG T+ +N+ F P L + +I L
Sbjct: 73 YRLRRRMGMLFQ-----SGALFDSLTVFENVAF-----PLREHTRLSEEEIR-EIVLEK- 120
Query: 718 GDMAYIGEKGV------NLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 767
+ +G +G LSGG + R+ALARA+ ++ + D+ + +D +
Sbjct: 121 --LEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDL 178
Query: 768 ILS-NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
I S L T I+ TH++ + AD + V+ G++ G+ +L
Sbjct: 179 IRSLKK-----ELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 4e-12
Identities = 42/191 (21%), Positives = 74/191 (38%), Gaps = 48/191 (25%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
L+ VSL + +G + A++GE G+GKS+L+ + G G I
Sbjct: 14 KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL--------------- 58
Query: 681 SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740
+ GK S + +A G M Y LS G+R + +
Sbjct: 59 --------VDGKEVSFASPRDARRA-----------GIAMVY------QLSVGERQMVEI 93
Query: 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK---TRILCTHNVQAISA-A 796
ARA+ + + +LD+ +A+ + ++ L+ I +H + + A
Sbjct: 94 ARALARNARLLILDEPTAALTPAEVERLF--KVI--RRLRAQGVAVIFISHRLDEVFEIA 149
Query: 797 DMVVVMDKGQV 807
D V V+ G+V
Sbjct: 150 DRVTVLRDGRV 160
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-12
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----HASGSIAYVPQVPWILS 681
L +P G +VA++G G+GKS+LLN I G G I + S V +
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 682 G-------TIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGGDMAYIGEKGVNL 730
T+ NI G S LK + VG ++ L
Sbjct: 79 ENNLFAHLTVAQNIGLGL-------SPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGEL 130
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK-TRILCTHN 789
SGGQR R+ALAR + I +LD+ SA+D R + + +K T ++ TH+
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 790 VQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ A AD VV +D G++ GS+ +L
Sbjct: 190 PEDAARIADRVVFLDNGRIAAQGSTQEL 217
|
Length = 231 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-12
Identities = 56/207 (27%), Positives = 104/207 (50%), Gaps = 17/207 (8%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1292
AL++++ + G G++G +GAGKS+++ + L G ++VDG ++ +L
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 1293 -RGRFAVVPQS-PFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCH--VKEEVEAVGLETFV 1347
R + ++ Q L ++ N+ P +++ K ++ V E + VGL
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK-----DEIKRKVTELLALVGLGDKH 134
Query: 1348 KESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMT 1404
+ S GQ+Q + +ARAL + KVL DE T+ +D A T SIL+ I+ G+T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLT 193
Query: 1405 VITIAHRISTVLNM-DEILILDHGHLV 1430
++ I H + V + D + ++ +G L+
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELI 220
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------ 674
VL V + G V + G GSGKSSL + + + G I G I+ +P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95
Query: 675 ------QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
Q P + SG+IR N+ E L+ L + + GG A + E G
Sbjct: 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGE 155
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
N S GQR LARA S I ++D+ +++D IL +M +T + H
Sbjct: 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN-ILQKVVMTA-FADRTVVTIAH 213
Query: 789 NVQAISAADMVVVMDKG 805
V I AD+V+V+ +G
Sbjct: 214 RVSTILDADLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 5e-12
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 677
VL +SL + KG +V +IG GSGKS+LL + G GSI G + +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 678 WILSG--------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGGD 719
+ T+ +N+ K E L+ VG
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALEL-LE-----KVG-- 125
Query: 720 MAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSN 771
+ +K LSGGQ+ R+A+ARA+ + + D+ SA+D +V +
Sbjct: 126 ---LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 772 AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
A G T I+ TH + A AD V+ MD+G++ G +
Sbjct: 183 AEEG-----MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
|
Length = 240 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-12
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 40/153 (26%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS----IHASGSIAYV 673
+ V+L +S + G + + G G+GKSSL ++ G + GS + + ++
Sbjct: 12 DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGMPEGEDLLFL 69
Query: 674 PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733
PQ P++ GT+R+ +++ P DV LSGG
Sbjct: 70 PQRPYLPLGTLREQLIY-----PWD----------DV-------------------LSGG 95
Query: 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
++ RLA AR + H LD+ SA+D +
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESED 128
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 22/213 (10%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSS---LLNSILGEMMLTHGSIHASG---------- 668
LN +S +P+GS A+IG GSGKS+ L+N +L + I G
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
+ V Q P + T+ D++ FG E +K V L G + YI
Sbjct: 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKI----VRDVLADVGMLDYI 137
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
+ NLSGGQ+ R+A+A + I +LD+ S +D IL T
Sbjct: 138 DSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTV 197
Query: 784 ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
I TH++ + AD V+V+D G++ GS ++
Sbjct: 198 ISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230
|
Length = 282 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-12
Identities = 57/212 (26%), Positives = 103/212 (48%), Gaps = 22/212 (10%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ +IE +N+ + Y AL++IN I + ++G +G GKS+ L L R+ + G
Sbjct: 5 EAIIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG 62
Query: 1276 -----QILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLD---PFH-MNDDLK 1324
++ +G NI N + +LR + +V Q+P F S+ DN+ H D K
Sbjct: 63 IKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKK 122
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+ ++E+ K L VK+ + +S S GQ+Q +C+AR L V+ +DE
Sbjct: 123 LDEIVEQSLKKS-----ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRI 1412
T+ +D + ++ I + + T+I + H +
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-12
Identities = 63/204 (30%), Positives = 99/204 (48%), Gaps = 20/204 (9%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RD 1291
AL DI+ +++ G V ++G +G GK+++L + L G I G +I P RD
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 1292 LRGRFAVVPQSPFLFEG-SLRDN----LDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
+ +V QS LF ++ DN L M V E+ V E ++ VGL
Sbjct: 78 ----YGIVFQSYALFPNLTVADNIAYGLKNRGMGRA----EVAER--VAELLDLVGLPGS 127
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1404
++ S GQ+Q + LARAL S +L LDE + +DA+ L+ I + G+T
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVT 187
Query: 1405 VITIAHRISTVLNM-DEILILDHG 1427
I + H L+M D I++++HG
Sbjct: 188 TIMVTHDQEEALSMADRIVVMNHG 211
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 63/237 (26%), Positives = 91/237 (38%), Gaps = 44/237 (18%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
GLI + K AL I+FTIE G VG +G GAGK++ L L L G+
Sbjct: 18 GLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77
Query: 1277 ILVDGLNIINTPVRDLRGRFAVV------------PQSPFLFEGSLRD--NLDPFHMNDD 1322
+ V GL + + R VV F L +L P
Sbjct: 78 VRVAGL-VPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARF--- 130
Query: 1323 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
K + E E + LE + S+GQR +A ALL ++L LDE T
Sbjct: 131 --------KKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182
Query: 1383 NVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEI-------LILDHGHLV 1430
+D ++N + + G TV+ +H M +I L++D G L+
Sbjct: 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSH------YMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 45/227 (19%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
++ VS L +G + ++GE GSGKS+L + G + + GSI G
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 670 ---IAYVPQVP-----------WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
I V Q P IL+ +R + +E L+ L +
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEF--- 422
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
D Y E LSGGQR R+A+ARA+ + +LD+ +SA+D V +L N +
Sbjct: 423 --LDR-YPHE----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKD 474
Query: 776 PHMLQK----TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
LQ+ T + +H++ + AD V VM G++ G + +
Sbjct: 475 ---LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVF 518
|
Length = 539 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 8e-12
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 24/221 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ V+ Y A ++ ++FT+ G G++G GAGKS+I + +T G+I
Sbjct: 42 IDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKIT 99
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1337
V G+ + R R R VVPQ DNLD F + ++L ++ + E
Sbjct: 100 VLGVP-VPARARLARARIGVVPQF---------DNLDLEFTVRENLLVFGRYFGMSTR-E 148
Query: 1338 VEAV--------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+EAV LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 149 IEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208
Query: 1390 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGH 1428
++ + S +G T++ H + + D + +L+ G
Sbjct: 209 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGR 249
|
Length = 340 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-12
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 28/213 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
++D + +E G I+G +G+GKS+++ L RL G+ILVDG +I +LR
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 1295 ----RFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV-LEKCHVK--EEVEAV 1341
+ ++V QS L P H ++ L++ V + + E +E V
Sbjct: 103 LRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPKAEREERALEALELV 152
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AISS 1398
GLE + + S G +Q + LARAL +L +DE + +D + +Q+ + +
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 1399 ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ K T++ I H + L + D I I+ G +V
Sbjct: 213 KLK-KTIVFITHDLDEALRIGDRIAIMKDGEIV 244
|
Length = 386 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 53/215 (24%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG-LNIINTPVRDLR 1293
AL+D++F+++ G ++G GAGK+++++ + T G++L DG ++ P +
Sbjct: 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 1294 ----GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEA 1340
GR F Q P +FE ++R+NL+ +N D +++ L E+ + E +
Sbjct: 80 RAGIGRKF----QKPTVFENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLAT 134
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DAQTASI--LQNAIS 1397
+GL S GQ+Q + + L + K+L LDE A + DA+T L +++
Sbjct: 135 IGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA 194
Query: 1398 SECKGMTVITIAHRISTVLNM-DEILILDHGHLVC 1431
+ +++ + H + V + D++ +L G ++
Sbjct: 195 GKH---SILVVEHDMGFVREIADKVTVLHEGSVLA 226
|
Length = 249 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 32/237 (13%)
Query: 1218 LIEFQNVTMRYKPSL-------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
L+E ++VT Y+ L +++ +IE G VG++GR+G GKS++ L L
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 1271 PICGGQILVDGLNIINTP-------VRDLRGRF-----AVVPQSPFLFEGSLRDNL-DPF 1317
G + G ++ RD++ F AV P+ ++R + +P
Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM------TVRQIIGEPL 115
Query: 1318 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES-GISFSVGQRQLICLARALLKSSKVLC 1376
L + + E ++ VGL + + S GQ Q I +ARAL K++
Sbjct: 116 RHLTSLDESEQKAR--IAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIV 173
Query: 1377 LDECTANVDA--QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
LDE +N+D Q + + G + I H + V + + ++D G +V
Sbjct: 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 20/219 (9%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +N++ RY ++ ++ +++ G VG++G GAGK++ + L G+IL
Sbjct: 1 LRAENLSKRYGKRK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58
Query: 1279 VDGLNIINTPVRDLRGRFAV--VPQSPFLFEG-SLRDNLDPF--HMNDDLKIWSVLEKCH 1333
+DG +I P+ R R + +PQ +F ++ +N+ K EK
Sbjct: 59 LDGQDITKLPM-HKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EK-- 113
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
++E +E + K S S G+R+ + +ARAL + K L LDE A VD +Q
Sbjct: 114 LEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQ 173
Query: 1394 NAISS-ECKGMTVITIAHRISTVLNMDEIL-ILDHGHLV 1430
I + +G+ V+ H N+ E L I D +++
Sbjct: 174 KIIKILKDRGIGVLITDH------NVRETLSITDRAYII 206
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----- 1272
+I +V + Y AL I+ ++G +G GKS+ L L R+ +
Sbjct: 5 IITSSDVHLFYGKF--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 1273 CGGQILVDGLNII--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G + + G NI N V LR + +V Q P F S+ +N+ L++ V +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY-----GLRLAGVKD 117
Query: 1331 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
K + E VE + VK ES +S S GQ+Q +C+AR L V+ LDE T+
Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAHRIS 1413
+D +++ ++N + T+I + H +
Sbjct: 178 ALDPISSTQIENMLLELRDQYTIILVTHSMH 208
|
Length = 252 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 58/208 (27%), Positives = 93/208 (44%), Gaps = 24/208 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC-- 1273
+E +N+ + Y AL DI+ I +G +G GKS++L R L C
Sbjct: 26 LEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83
Query: 1274 GGQILVDGLNIINTPVRD---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
G+I +DG NI D LR R +V Q P F S+ +N+ L++ +
Sbjct: 84 EGEIRLDGQNI-YDKKVDVAELRRRVGMVFQRPNPFPKSIYENV-----VYGLRLQGINN 137
Query: 1331 KCHVKEEVE----AVGLETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+ + E VE L VK E+ S GQ+Q + +ARA+ +VL LDE T+
Sbjct: 138 RRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAH 1410
+D + ++ I+ T++ + H
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-11
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 37/219 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL+ +S + V ++G G+GKSS+LN++ + L G I G
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313
Query: 669 SIAYVPQVPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ +PQ P + SGT+R N+ F ++ D + +A DV +G D A + E G
Sbjct: 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLD-AEVSEAG 1372
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI--- 784
N S GQR L+LARA+ S I +LD+ +AVD + ++A+ +QKT I
Sbjct: 1373 ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR------TDAL-----IQKT-IREE 1420
Query: 785 --LCT-----HNVQAISAADMVVVMDKGQVKWIGSSADL 816
CT H + I D ++V+D G+V + +L
Sbjct: 1421 FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENL 1459
|
Length = 1622 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 23/207 (11%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----SIAYVPQ 675
++ VS + G + ++G G+GK++ L + G + G G A +
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78
Query: 676 VPWILSG--------TIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA-YIGE 725
+S T R+N+ F Y + + L A L+ + M +
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLK--GDELTA-RLEELADRL---GMEELLDR 132
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
+ S G R ++A+ARA+ H + +LD+ + +D R L I L K +
Sbjct: 133 RVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATR-ALREFIRQLRALGKCILF 191
Query: 786 CTHNVQAISA-ADMVVVMDKGQVKWIG 811
TH +Q + D VVV+ +G+V + G
Sbjct: 192 STHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 47/240 (19%)
Query: 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L++ +N+ RY+ L ++ +I G V IVG +G+GKS++L+ L L G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 1276 QILVDG--LNIINTPVR-DLRGR-FAVVPQSPFLFEGSLRDNLDPFH--MNDDLKIWSVL 1329
++L +G L+ +++ R LR + + Q FH + D ++ L
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQ---------------FHHLLPD----FTAL 101
Query: 1330 E------------KCHVKEE----VEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373
E KE +E VGLE + S G+RQ + +ARAL+
Sbjct: 102 ENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPS 161
Query: 1374 VLCLDECTANVDAQTASILQNAI---SSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
++ DE T N+D A I+ + + + E + + + H + +D +L + G L
Sbjct: 162 LVLADEPTGNLDNNNAKIIFDLMLELNRE-LNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 29/232 (12%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
LIE +NV++R L D+++ + G IVG GAGK+++L+ L P G +
Sbjct: 31 LIELKNVSVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1278 LVDGLNIINTPV-RDLRGRFAVVPQSPFLFEGSLRDN-------LDPFHMNDDLKIW--- 1326
+ G +LR R +V S L E R L F + I+
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLV--SSELHE-RFRVRETVRDVVLSGFF--ASIGIYQED 143
Query: 1327 ---SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
L +E +G + S S G+++ + +ARAL+K ++L LDE
Sbjct: 144 LTAEDLAAAQ--WLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 1384 VD----AQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLV 1430
+D Q + L+ +++ ++ + H + L+L G +V
Sbjct: 202 LDLIAREQLLNRLEE-LAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 26/199 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNIINT-- 1287
AL D++ I ++G +G GKS+ L + R L G++ G N+ +
Sbjct: 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113
Query: 1288 -PVRDLRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEA 1340
PV LR R +V Q P F S+ DN + + + D ++ L + + +EV+
Sbjct: 114 DPVA-LRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD 172
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
+ SG+ S GQ+Q +C+ARA+ +V+ +DE + +D S +++ I
Sbjct: 173 Q-----LDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 1401 KGMTVITIAH------RIS 1413
+ TV+ + H RIS
Sbjct: 228 EEYTVVIVTHNMQQAARIS 246
|
Length = 285 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 64/225 (28%), Positives = 107/225 (47%), Gaps = 37/225 (16%)
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288
L AL ++FT+E G + +VG +G GKS++ L + GG++ G +++
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83
Query: 1289 ---VRDLRGRFAVVPQSPFLFEGSL------RDNL-DPFHMNDDLKIWSVLEKCHVKEEV 1338
+ LR + +V Q+P+ GSL L +P +N L S E+ +E+
Sbjct: 84 PEAQKLLRQKIQIVFQNPY---GSLNPRKKVGQILEEPLLINTSL---SAAER---REKA 134
Query: 1339 EA----VGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1389
A VGL FS GQRQ I +ARAL+ V+ DE + +D AQ
Sbjct: 135 LAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL 194
Query: 1390 SI---LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
++ LQ + G++ + I+H +S V ++ DE++++ G V
Sbjct: 195 NLMMDLQQEL-----GLSYVFISHDLSVVEHIADEVMVMYLGRCV 234
|
Length = 327 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 668
LP + A+ G GSGK++L+ I G G I +G
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 669 SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I YV Q + ++R N+ +G K P + + + I ++G +
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG--------R 127
Query: 727 GVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM---LQKT 782
LSGG++ R+A+ RA+ + ++D+ L+A+D IL P++ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEIL------PYLERLHAEF 181
Query: 783 RILC---THNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNE 829
I +H++Q + AD VVV++ G+V G A++ S + + +
Sbjct: 182 GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLARED 232
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (160), Expect = 2e-11
Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 9/219 (4%)
Query: 1218 LIEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
++E +N+ +Y K S L+ ++F+I G V I+G+ G+GKS+ + L G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSP-FLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHV 1334
+ +DG + V +LR + +V Q+P F G+ ++ F M N + ++++ V
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR--V 121
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
E + AV + F S GQ+Q + +A + +++ LDE T+ +D +
Sbjct: 122 DEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 1395 AISSECKG---MTVITIAHRISTVLNMDEILILDHGHLV 1430
I E K +TV++I H + + D IL++ G ++
Sbjct: 182 VI-HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEII 219
|
Length = 277 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 24/166 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT---PIC--GGQILVDGLNIINT-- 1287
AL D++ I T +G +G GKS+ L L R+ C G+I +DG +I +
Sbjct: 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 1288 -PVRDLRGRFAVVPQSPFLFEGSLRDN---------LDPFHMNDDLKIWSVLEKCHVKEE 1337
V LR R +V Q P F S+ +N L D + + L K + EE
Sbjct: 94 DVVE-LRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1382
V + + E G S GQ+Q +C+ARA+ S +V+ +DE C+A
Sbjct: 153 V-----KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193
|
Length = 267 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ + Y AL DI G + ++G +GAGKSS+L L L G +
Sbjct: 3 IQLNGINCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN 60
Query: 1279 VDG--LNIINTP----VRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLE- 1330
+ G + TP +RDLR +V Q L+ ++++NL + ++ + +
Sbjct: 61 IAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL----IEAPCRVLGLSKD 116
Query: 1331 --KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--- 1385
++ ++ + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176
Query: 1386 -AQTASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHGHLVCIS 1433
AQ SI++ + G+T + + H + S V+ M+ I++ G C +
Sbjct: 177 TAQIVSIIKELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT 229
|
Length = 242 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 22/209 (10%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------INTPVRD 1291
D +FT+ G I GR+G+GK++++ + LT G+I+++G + I P
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPE- 73
Query: 1292 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKE 1349
+ R V Q LF S+R NL +K E+ E V E +G+ +
Sbjct: 74 -KRRIGYVFQEARLFPHLSVRGNL-----RYGMKRARPSERRISFERVIELLGIGHLLGR 127
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTV 1405
S G++Q + + RALL S ++L +DE A +D + L+ + +E G+ +
Sbjct: 128 LPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER-LHAEF-GIPI 185
Query: 1406 ITIAHRISTVLNM-DEILILDHGHLVCIS 1433
+ ++H + VL + D +++L+ G +
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAG 214
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 45/235 (19%)
Query: 1219 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
I+ +N+ + LP AL +++ I G + I+G+TG+GK++ LNAL L P
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL--LLPD 60
Query: 1273 CG-----------------GQILVDGLNIINTPVR------DLRGRFAVVPQSPF----L 1305
G + +++ L I T + ++R R VV Q F L
Sbjct: 61 TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQ--FAEYQL 118
Query: 1306 FEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLI 1362
FE ++ ++ P M + ++ + +E VGL E++++ S S GQ++ +
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKE--EAKKR--AAKYIELVGLDESYLQRSPFELSGGQKRRV 174
Query: 1363 CLARALLKSSKVLCLDECTANVDAQ-TASILQNAISSECKGMTVITIAHRISTVL 1416
LA L L DE TA +D Q IL+ + +G T+I + H + VL
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVL 229
|
Length = 305 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 3e-11
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 41/206 (19%)
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
S+ A+ D++F + G VGI G G G++ + ALF L P G+I +DG + R
Sbjct: 11 SVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPR 70
Query: 1291 DLRGR-FAVVPQSPF---LFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1345
D A VP+ L S+ +N+ L
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENI-------------AL---------------- 101
Query: 1346 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECKGMT 1404
S G +Q + LAR L + +VL LDE T VD A I + G
Sbjct: 102 -----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1405 VITIAHRISTVLNM-DEILILDHGHL 1429
V+ I+ + +L + D IL++ G +
Sbjct: 157 VLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTP--ICGGQILVDGLNIINTPV 1289
AL +IN +I I+G +G GKS+ LN + ++ P G++ +G NI+ V
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86
Query: 1290 R--DLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE----AV 1341
+LR +V Q F S+ DN+ P +I K ++E VE V
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGP-------RIHGTKNKKKLQEIVEKSLKDV 139
Query: 1342 GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
L VK+ +S S GQ+Q +C+ARAL + VL +DE T+ +D + ++ I
Sbjct: 140 ALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELIL 199
Query: 1398 SECKGMTVITIAH 1410
+ T++ + H
Sbjct: 200 KLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 4e-11
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII-NTP 1288
AL IN I ++G +G GKS++L L R+ + G ++ +DG +I N
Sbjct: 18 ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGLE 1344
V DLR + +V Q P F S+ +N+ L+ + +K + E VE L
Sbjct: 78 VADLRIKVGMVFQKPNPFPMSIYENV-----AYGLRAQGIKDKKVLDEVVERSLRGAALW 132
Query: 1345 TFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
VK+ S GQ+Q +C+AR + V+ +DE T+ +D ++ +
Sbjct: 133 DEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK 192
Query: 1401 KGMTVITIAH------RIS 1413
K T++ + H RIS
Sbjct: 193 KNYTIVIVTHSMQQARRIS 211
|
Length = 249 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-11
Identities = 57/191 (29%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
LH ++ T G G++G G+GKS++L L R P G+IL+D + + + +
Sbjct: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86
Query: 1296 FAVVPQSPFLFEG-SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKES 1350
A +PQ EG ++R+ + P+H L + ++ V+E + VGL+
Sbjct: 87 VAYLPQQLPAAEGMTVRELVAIGRYPWH--GALGRFGAADREKVEEAISLVGLKPLAHRL 144
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSECKGMTVIT 1407
S S G+RQ +A + + S+ L LDE T+ +D A +L + +S E +G+TVI
Sbjct: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE-RGLTVIA 203
Query: 1408 IAHRISTVLNM 1418
+ H I NM
Sbjct: 204 VLHDI----NM 210
|
Length = 265 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 42/238 (17%)
Query: 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
W +Q P A+ + + G +G+VG +G GKS+ A+ L
Sbjct: 26 WFWQ------------PPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA 73
Query: 1273 CGGQILVDGLNII---NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN------DDL 1323
G++ G +++ + R +R ++ Q P +L+P M + L
Sbjct: 74 TDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA-------SLNP-RMTIGEIIAEPL 125
Query: 1324 KIW-SVLEKCHVKEEVEA----VGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+ + L + VK+ V+A VGL + FS GQ Q I +ARAL+ K++
Sbjct: 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185
Query: 1378 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
DE + +D AQ ++LQ + E G+++I IAH ++ V ++ D +L++ GH V
Sbjct: 186 DEPVSALDVSIQAQVVNLLQ-QLQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241
|
Length = 331 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 4e-11
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 18/194 (9%)
Query: 1251 IVGRTGAGKSSILNALFRLT-PICG----GQILVDGLNIIN-TPVRDLRGRFAVVPQSPF 1304
++G TG+GK++ L L R+ + G G +L+ G +I N V + R R ++ Q P
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111
Query: 1305 LFEGSLRDNLDP---FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE----SGISFSVG 1357
F S+ DN+ H K + + + + E VGL VK+ S S G
Sbjct: 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE----VGLWDAVKDRLSDSPFRLSGG 167
Query: 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417
Q+QL+CLAR L + +VL LDE T+ +D T ++ I S +TVI + H ++
Sbjct: 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR 227
Query: 1418 M-DEILILDHGHLV 1430
+ D + G LV
Sbjct: 228 ISDRAALFFDGRLV 241
|
Length = 276 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-11
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 56/139 (40%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 675
++L +SL + G + ++G G+GKS+LL I GE+ G + ++ I Y Q
Sbjct: 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ 70
Query: 676 VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735
LS GG++
Sbjct: 71 ----LS--------------------------------------------------GGEK 76
Query: 736 ARLALARAVYHGSDIYMLD 754
RLALA+ + ++ +LD
Sbjct: 77 MRLALAKLLLENPNLLLLD 95
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 38/218 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 666
+ L ++L +PK + A+IG G GKS+LL S I G+++ I+
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 667 SG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMV 716
+ V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG----PRLHGIKDKK-ELDEIVEESLKK 127
Query: 717 GGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772
+ ++ + LSGGQ+ RL +ARA+ ++ +LD+ SA+D I
Sbjct: 128 AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIE--E 185
Query: 773 IMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 807
++ L+K T ++ THN+ QA +D G++
Sbjct: 186 LI--QELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 17/212 (8%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL 1282
++++ Y+ +AL D++ TI G V ++G +G GK+++LN + G I ++G
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG- 66
Query: 1283 NIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSV---LEKCHVKEEV 1338
+ VV Q+ L ++ DN+ F L++ + + + +
Sbjct: 67 ----RRIEGPGAERGVVFQNEALLPWLNVIDNVA-F----GLQLRGIEKAQRREIAHQML 117
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
VGLE + S G RQ + +ARAL ++L LDE +DA T +Q +
Sbjct: 118 ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177
Query: 1399 ECK--GMTVITIAHRISTVLNM-DEILILDHG 1427
+ G V+ I H I L + +++L G
Sbjct: 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 7e-11
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 40/230 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1274
L+E + ++ + + +++ TI G + ++G +G GK+++L RL I G
Sbjct: 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVL----RL--IAGFET 65
Query: 1275 ---GQILVDGLNIINTPV--RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSV 1328
G+I++DG +I + P R + F QS LF ++ +N+ F L++
Sbjct: 66 PDSGRIMLDGQDITHVPAENRHVNTVF----QSYALFPHMTVFENV-AF----GLRMQKT 116
Query: 1329 LE---KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
V E + V LE F + S GQ+Q + +ARA++ KVL LDE + +D
Sbjct: 117 PAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 1386 AQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGH 1428
+ L+ + +E K G+T + + H L M D I+++ G
Sbjct: 177 YK----LRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
|
Length = 375 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-11
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 13/219 (5%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +++ RYK AL ++ +I G++ ++G GAGKS++L L + G++
Sbjct: 5 IEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
V G + + +R + +V Q P +F ++ D++ +N L V + V+E
Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERR--VEE 121
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASIL 1392
++AV + F + S GQ++ + +A L V+ LDE A +D IL
Sbjct: 122 ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEIL 181
Query: 1393 QNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
+ + ++ G TVI H + D++++L G ++
Sbjct: 182 -DRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEGRVL 217
|
Length = 274 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 53/228 (23%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
N V++ ++L + +G++V ++G G GK+++L + G T G I G
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 669 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVGGDM 720
S A P + ++ +N+ +G E + V +L +V D+
Sbjct: 79 DICMVFQSYALFPHM------SLGENVGYGLKMLGVPKEERKQR----VKEALELV--DL 126
Query: 721 AYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
A ++ V+ +SGGQ+ R+ALARA+ + + D+ LS +DA + R M
Sbjct: 127 AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR----------SMR 176
Query: 780 QKTRIL----------CTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
+K R L TH+ +A + +D V+VM+KG++ IGS +L
Sbjct: 177 EKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 35/219 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+N ++L + KG + +IG GSGK++ + I + T G I G
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRR 75
Query: 669 SIAYVPQ----VPWILSGTIRDNI-----LFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I YV Q P + T+ +NI L + + D ++L+
Sbjct: 76 KIGYVIQQIGLFPHM---TVEENIALVPKLLK-------WPKEKIRERADELLALVGLDP 125
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 778
+ LSGGQ+ R+ +ARA+ + ++D+ A+D + R L
Sbjct: 126 AEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-ITRDQLQEEFKRLQQE 184
Query: 779 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L KT + TH++ A AD + +M G++ +G+ ++
Sbjct: 185 LGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-10
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 31/221 (14%)
Query: 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290
S + D++FT+ G +GI G GAG++ + ALF P G+IL+DG + R
Sbjct: 270 SGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPR 329
Query: 1291 D-LRGRFAVVP---QSPFLFEG-SLRDNLDPFHMN----DDLKIWSVL----EKCHVKEE 1337
D ++ A VP +S L S+ +N + ++ E+ +
Sbjct: 330 DAIKAGIAYVPEDRKSEGLVLDMSIAEN-----ITLASLRRFSRRGLIDRRKERALAERY 384
Query: 1338 VEAVGLETFVKESGI-----SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASI 1391
+ + +K + S G +Q + LAR L KVL LDE T +D A I
Sbjct: 385 IRRLR----IKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI 440
Query: 1392 LQNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ I G ++ I+ + +L + D IL++ G +V
Sbjct: 441 YR-LIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 35/214 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
L VSL + +G ++G GSGKS LL +I G + G I +G
Sbjct: 12 EFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKR 71
Query: 670 -IAYVPQ----VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I+YVPQ P + T+ NI +G + D + + +I+ M+G D
Sbjct: 72 DISYVPQNYALFPHM---TVYKNIAYGLKKRKVDKKEIERKVL------EIAEMLGID-H 121
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ---VARWILSNAIMGPHM 778
+ K LSGG++ R+A+ARA+ I +LD+ SA+D + R L
Sbjct: 122 LLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR---KE 178
Query: 779 LQKTRILCTHN-VQAISAADMVVVMDKGQVKWIG 811
T + TH+ +A + AD V +M G++ +G
Sbjct: 179 FGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-10
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 26/198 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRD 1291
AL I+ + G VG+ G GAGKS+++ L + P G G+I G + + +RD
Sbjct: 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNIRD 74
Query: 1292 L-RGRFAVVPQSPFLF-EGSLRDN--------LDPFHMNDDLKIWSVLEKCH--VKE-EV 1338
R ++ Q L E S+ +N L M + + ++E ++
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY----LRAKNLLRELQL 130
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
+A + V + G GQ+QL+ +A+AL K +++L LDE ++++ + IL + I
Sbjct: 131 DADNVTRPVGDYGG----GQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 1399 -ECKGMTVITIAHRISTV 1415
+ G+ + I+H+++ V
Sbjct: 187 LKAHGVACVYISHKLNEV 204
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 1218 LIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
L+E +N+ T RY+ L A+ ++FT+ G + I+G G+GKS++ L +
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63
Query: 1271 PICGGQILVDG--LNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLK 1324
G+IL++ L+ + R R R + P L G + D P +N DL+
Sbjct: 64 EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD--FPLRLNTDLE 121
Query: 1325 IWSVLEKCHVKEEVEAVGL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
++ + E + VGL + GQ+Q + LARAL+ K++ DE
Sbjct: 122 PEQRRKQ--IFETLRMVGLLPDHANYYPH--MLAPGQKQRVALARALILRPKIIIADEAL 177
Query: 1382 ANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
A++D S L N + E +G++ I + I + ++ D++L++ G +V
Sbjct: 178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229
|
Length = 267 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
V+ + +S L G + + G GSGK++LL I G + G+I G P V
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 681 -----------SGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ T+ +N+ F + + + L+A L +A++
Sbjct: 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGL---------APLAHL--P 124
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
LS GQ+ R+ALAR + I++LD+ +A+DA
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160
|
Length = 207 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 1e-10
Identities = 60/201 (29%), Positives = 91/201 (45%), Gaps = 21/201 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+F+NV RY L + ++F ++ G G++G GAGK++ L L LT G I
Sbjct: 8 IDFRNVEKRYGDKL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSV---LEKCHV 1334
+ G + + R R R VVPQ DNLDP F + ++L ++ L
Sbjct: 66 LCG-EPVPSRARHARQRVGVVPQF---------DNLDPDFTVRENLLVFGRYFGLSAAAA 115
Query: 1335 KEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ V E LE S G ++ + LARAL+ VL LDE T +D Q
Sbjct: 116 RALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 1391 ILQNAISS-ECKGMTVITIAH 1410
++ + S +G T++ H
Sbjct: 176 LMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 29/215 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVR 1290
+ D+N +++ G + +VG +G+GKS A+ L P G+IL+DG + P+
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLS 58
Query: 1291 DLRGR-FAVVPQSPFLFEGSLRDNLDPF-----HMNDDLKIWSVLEK---CHVKEEVEAV 1341
+RGR A + Q+P R +P H + L+ L K + E +EAV
Sbjct: 59 -IRGRHIATIMQNP-------RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAV 110
Query: 1342 GL---ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQNAIS 1397
GL E +K+ S G Q + +A ALL L DE T ++D A +L+
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 1398 -SECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ G ++ I H + V + DE+ ++D G +V
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGRIV 205
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 54/222 (24%), Positives = 105/222 (47%), Gaps = 22/222 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+ ++++ +Y S L I+FT+ G ++G GAGKS+++ + + P G +
Sbjct: 11 LLCARSISKQY--SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1278 LVDGLNIIN-TPVRDLRGRFAVVPQSPFLFEG-SLRDNLD---PFHMNDDLKIWSVLEK- 1331
+ G TP + + +VPQ P LF S+++N+ P K+ +L
Sbjct: 69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128
Query: 1332 -CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTA 1389
C + + A LE V RQ++ + R L++ S++L LDE TA++ A+T
Sbjct: 129 GCQLDLDSSAGSLE-----------VADRQIVEILRGLMRDSRILILDEPTASLTPAETE 177
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ +G+ ++ I+H++ + + D I ++ G +
Sbjct: 178 RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
Length = 510 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPICG--GQILVDGLNII--NT 1287
AL+ ++ ++G +G+GKS++L ++ R L P G I+ +G NI T
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AVGL 1343
DLR +V Q P F S+ +N+ L++ + +K + E VE +
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENV-----VYGLRLKGIKDKQVLDEAVEKSLKGASI 134
Query: 1344 ETFVK----ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
VK +S + S GQ+Q +C+AR L S K++ LDE T+ +D +A ++ +
Sbjct: 135 WDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194
Query: 1400 CKGMTVITIAH------RIS 1413
T++ + RIS
Sbjct: 195 KDDYTMLLVTRSMQQASRIS 214
|
Length = 252 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669
L VS + +G VA++G GSGKS+L + G ++ G+I G
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82
Query: 670 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ V Q P + T++D++ FG E ++ VD +L G ++ +
Sbjct: 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER----VDQALRQVGMEDFLNREP 138
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC- 786
LSGGQ+ R+A+A + DI +LD+ S +D + R +L + ++ I
Sbjct: 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETV---RQLKEQKGITVL 195
Query: 787 --THNVQAISAADMVVVMDKGQVKWIG 811
TH++ + AD V+VM+KG++ G
Sbjct: 196 SITHDLDEAAQADRVIVMNKGEILEEG 222
|
Length = 279 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 669
L ++L + KG + +IG+ GSGKS+L + G + G + SG
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 670 -IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ V Q P + T+ +++ FG P++ VD +L G Y
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFG----PENLCLPPIEIRKRVDRALAEIGLEKYRHRS 133
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQ +ALA + + + D+V S +D +L I H KT +
Sbjct: 134 PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYI 192
Query: 787 THNVQAISAADMVVVMDKGQVKWIGS 812
THN++ + AD ++VMD+G++ G
Sbjct: 193 THNLEELHDADRIIVMDRGKIVLEGE 218
|
Length = 274 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 43/224 (19%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
V+ RY L+ ++ I G V +VGR+G GKS++L L L G++L
Sbjct: 16 NAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG- 72
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLF-------------EGSLRDNLDPFHMNDDLKIWSV 1328
P+ + R ++ Q L +G RD
Sbjct: 73 ----TAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDA--------------- 113
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
+ + AVGL E + S GQ+Q + LARAL+ +L LDE +DA T
Sbjct: 114 -----ALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 1389 ASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
+Q+ I S + G TV+ + H +S + M D +L+++ G +
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-10
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 28/206 (13%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+F+N+ + P+ + ++F + G + I G G GKSS+ L L P+ GG++
Sbjct: 452 IKFENIPL-VTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+G+ VPQ P++ G+LRD + ++D+K + +K +++ +
Sbjct: 511 KPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDK-DLEQIL 558
Query: 1339 EAVGLETFVK-ESGIS--------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+ V L ++ E G S S G++Q I +AR + LDECT+ V
Sbjct: 559 DNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD-- 616
Query: 1390 SILQNAISSECK--GMTVITIAHRIS 1413
++ + C+ G+T+ +++HR S
Sbjct: 617 --VEGYMYRLCREFGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-------GSIHASGSIA 671
+ + V++ + K + A+IG G GK++LL SI M H G I+ G
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI--NRMNDHIPGFRVEGKIYFKGQDI 72
Query: 672 YVP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL 708
Y P Q P +I DN+ FG K+ + E+LK L
Sbjct: 73 YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAAL 132
Query: 709 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI 768
++ + + + G LSGGQ+ RL +ARA+ ++ +LD+ SA+D + I
Sbjct: 133 WDEVK-------SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRI 185
Query: 769 LSNAIMGPHMLQK-----TRILCTHNV-QAISAADMVVVMDKGQV 807
+L++ T ++ THN+ QAI AD + M +G++
Sbjct: 186 EK-------LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223
|
Length = 250 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (157), Expect = 2e-10
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 10/210 (4%)
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288
K L + D + IE G I+G +G+GKS+++ L RL GQ+L+DG++I
Sbjct: 37 KTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS 96
Query: 1289 VRDL----RGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL 1343
+L R + A+V QS L ++ DN F M + I + + + + VGL
Sbjct: 97 DAELREVRRKKIAMVFQSFALMPHMTVLDN-TAFGM-ELAGINAEERREKALDALRQVGL 154
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA-ISSECKG 1402
E + S G RQ + LARAL + +L +DE + +D + +Q+ + + K
Sbjct: 155 ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH 214
Query: 1403 M-TVITIAHRISTVLNM-DEILILDHGHLV 1430
T++ I+H + + + D I I+ +G +V
Sbjct: 215 QRTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
Length = 400 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 53/211 (25%), Positives = 106/211 (50%), Gaps = 22/211 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1274
L+E +N+T + + A L +++ + G V + G GAGKS+++ L + P G
Sbjct: 5 LLEMKNITKTF-GGVKA-LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYE 61
Query: 1275 GQILVDGLNIINTPVRD--------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
G+I+ +G + + +RD + A+V + L L + + P + D ++
Sbjct: 62 GEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121
Query: 1327 SVLEKCHVKEEVE-AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+K + +++ + T V G+ GQ+QL+ +A+AL K +++L LDE TA++
Sbjct: 122 LRAQK--LLAQLKLDINPATPVGNLGL----GQQQLVEIAKALNKQARLLILDEPTASLT 175
Query: 1386 AQTASILQNAISS-ECKGMTVITIAHRISTV 1415
++L + I + G+ I I+H+++ V
Sbjct: 176 ESETAVLLDIIRDLKAHGIACIYISHKLNEV 206
|
Length = 506 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 2e-10
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTP--I 1272
L+ Q+V + Y A+ ++N ++ GT ++G +G GK++ L A+ R LTP
Sbjct: 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR 61
Query: 1273 CGGQILVDGLNIINTPVRD--LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1329
G+IL+DG +I V +R R +V Q P F S+ DN+ LK+ +
Sbjct: 62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVA-----GLKLAGIR 116
Query: 1330 EKCHVKEEVE----AVGLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDECT 1381
++ H+ E E L VK+ S GQ+Q +C+ARAL ++L +DE T
Sbjct: 117 DRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPT 176
Query: 1382 ANVDAQTASILQNAISSECKGMTVITIAHRI 1412
+ +D + + +++ ++ K T+I + H +
Sbjct: 177 SALDPASTARIEDLMTDLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 2e-10
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 12/188 (6%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG-----QILVDGLNII--NTP 1288
L +IN I+G +G GKS++L AL R+ I G +L+D NI N
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVK 1348
V +LR R +V Q P F S+ DN+ S L++ V++ + L VK
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV-VEKSLRQAALWDEVK 138
Query: 1349 E----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
+ SG++ S GQ+Q +C+AR L +V+ +DE + +D + ++ + + T
Sbjct: 139 DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYT 198
Query: 1405 VITIAHRI 1412
+ + H +
Sbjct: 199 IAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------IAYVPQ---V 676
L KG L+ ++G G+GK++LL +ILG + G++ +G+ I YVPQ
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 677 PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQR 735
W ++ ++ G+ A V +L G + + ++ V LSGGQR
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-LTELADRPVGELSGGQR 119
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRILCTHN-VQA 792
R+ +ARA+ + +LD+ + +D + L + G ++ TH+ QA
Sbjct: 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT---AILMTTHDLAQA 176
Query: 793 ISAADMVVVMDKGQVKWIGSSADL 816
++ D VV+++ G+V G+ L
Sbjct: 177 MATCDRVVLLN-GRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 54/214 (25%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR- 1293
AL+D++ ++ G I+G GAGK+++++ + T G +L G ++ P +
Sbjct: 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76
Query: 1294 ---GR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL-------EKCHVKEEVEAV 1341
GR F Q P +FE ++ +NL+ + D +++ L EK ++E +E +
Sbjct: 77 AGIGRKF----QKPTVFENLTVFENLE-LALPRDKSVFASLFFRLSAEEKDRIEEVLETI 131
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV-DA---QTASILQNAIS 1397
GL S GQ+Q + + L++ K+L LDE A + D +TA +L++ ++
Sbjct: 132 GLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS-LA 190
Query: 1398 SECKGMTVITIAH------RIS---TVLNMDEIL 1422
+ +V+ + H I+ TVL+ +L
Sbjct: 191 GKH---SVVVVEHDMEFVRSIADKVTVLHQGSVL 221
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 33/160 (20%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ------ 675
L ++L L G L+ V+G G GK++LLN I G + HGSI G P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 676 ------VPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+PW ++DN+ FG K + + LK L+ G + Y
Sbjct: 76 FQNEGLLPWR---NVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-------GAEKRY 125
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
I + LSGGQR R+ +ARA+ + +LD+ A+DA
Sbjct: 126 IWQ----LSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 3e-10
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 30/227 (13%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+VL VS + V ++G GSGKS+LL + + + + G I +G
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 669 -SIAYVPQVPWILSGTIRDNILFGKNYDP---QSYSETLKACTLDVDISLMV----GGDM 720
+ +PQ P + GT+R N+ DP S +E A L V + V G
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNV------DPFLEASSAEVWAALEL-VGLRERVASESEGID 1436
Query: 721 AYIGEKGVNLSGGQRARLALARAVY-HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ + E G N S GQR + +ARA+ GS ++D+ + +D + R I +M
Sbjct: 1437 SRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQI-QATVMSA-FS 1494
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 826
T I H + ++ D ++VMD G V +GS +L ++ S F S
Sbjct: 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHS 1541
|
Length = 1560 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 43/226 (19%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY + L +++ +PK + A+IG G GKS+LL I G+++
Sbjct: 15 WY-----GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69
Query: 659 LTHGSIHASGS--------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
+I SG+ I V Q P +I +N+ +G P+ + E K TLD
Sbjct: 70 YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYG----PRIHGEKNKK-TLDT 124
Query: 711 DISLMVGGDMAY------IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
+ + G + + + ++LSGGQ+ RL +AR + ++ ++D+ SA+D +
Sbjct: 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP-I 183
Query: 765 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 807
A + + I L+K T I+ THN+ QA +D M G++
Sbjct: 184 ATAKIEDLIE---DLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226
|
Length = 253 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD--- 1291
A+ D + I G +G +G GKS++L +L R+ + G ++ + V
Sbjct: 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82
Query: 1292 ----LRGRFAVVPQSPFLFEGSLRDN------LDPFHMNDDLKIWSVLEKCHVKEEVEAV 1341
+R +V Q P F S+ DN L+ + + ++ L+ + +EV+
Sbjct: 83 DPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK 142
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
+K SG+S S GQ+Q +C+ARA+ +VL LDE + +D ++ + K
Sbjct: 143 -----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197
Query: 1402 GMTVITIAHRI 1412
T+ + H +
Sbjct: 198 DYTIALVTHNM 208
|
Length = 261 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 3e-10
Identities = 57/219 (26%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ V+ Y + ++D++FTI G G++G GAGKS+I L + G+I
Sbjct: 5 IDLVGVSKSYGDKV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDP-FHMNDDLKIWSVLEKCHVKEE 1337
V G + + R R VVPQ DNLDP F + ++L ++ +E
Sbjct: 63 VLG-EPVPSRARLARVAIGVVPQF---------DNLDPEFTVRENLLVFGRYFGMSTREI 112
Query: 1338 VEAVG-------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
+ LE+ S G ++ + LARAL+ ++L LDE T +D
Sbjct: 113 EAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHG 1427
++ + S +G T++ H + + D + +L+ G
Sbjct: 173 LIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 16/216 (7%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSS---ILNALFRLTPICGG 1275
+E +NVT Y ++ IN TI+ G + ++G G+GKS+ +L L++ P G
Sbjct: 323 LELRNVTFAY-QDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQ-SG 378
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+IL+DG + D R F+ V LF+ L P + + LE+ +
Sbjct: 379 EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKP---ANPALVEKWLERLKMA 435
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
++E S + S GQ++ + L AL + +L LDE A+ D
Sbjct: 436 HKLELEDGRI----SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQV 491
Query: 1396 ISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1429
+ + G T+ I+H ++ D +L + +G L
Sbjct: 492 LLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQL 527
|
Length = 547 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 21/211 (9%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-- 1292
+ +I+FT+ G +G+VG +G+GKS+ AL RL G+I DG + N R L
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLP 359
Query: 1293 -RGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKI-WSVLEKCHVKEEV----EAVGLET 1345
R R VV Q P SL L+ + + L++ L +++V E VGL+
Sbjct: 360 VRHRIQVVFQDPN---SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 1346 FVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSEC 1400
+ + FS GQRQ I +ARAL+ ++ LDE T+++D AQ ++L++ +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL--QQK 474
Query: 1401 KGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ + I+H + V + ++++L G +V
Sbjct: 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505
|
Length = 529 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 58/199 (29%), Positives = 94/199 (47%), Gaps = 9/199 (4%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV--RDLRGR 1295
D++ T+ G VG++G GAGK++ + + P G I++D +I P+ R RG
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG- 79
Query: 1296 FAVVPQSPFLFEG-SLRDNLDP-FHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
+PQ +F S+ DNL + DDL + + E +E +E G S
Sbjct: 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLS--AEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRI 1412
S G+R+ + +ARAL + K + LDE A VD + ++ I G+ V+ H +
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 1413 STVLNMDE-ILILDHGHLV 1430
L + E I+ GHL+
Sbjct: 198 RETLAVCERAYIVSQGHLI 216
|
Length = 241 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288
K ++D++ + G I+G +G+GKS++L + RL G++L+DG +I
Sbjct: 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS 92
Query: 1289 VRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE------- 1337
++LR + ++V QS L P H + LE V
Sbjct: 93 RKELRELRRKKISMVFQSFALL---------P-HRTVLENVAFGLEVQGVPRAEREERAA 142
Query: 1338 --VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN- 1394
+E VGLE + + S G +Q + LARAL +L +DE + +D +Q+
Sbjct: 143 EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDE 202
Query: 1395 --AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ +E T++ I H + L + D I I+ G LV
Sbjct: 203 LLRLQAE-LQKTIVFITHDLDEALRLGDRIAIMKDGRLV 240
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 41/223 (18%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------ASGS------- 669
L V++ +P GS VA+IG GSGKS+LL + G + T G++ +G
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 670 ----IAYVPQVP--WILSGTIRDNILFGKNYDPQSY--SETLKACTLDVDISLMVGGDMA 721
+ V Q P + T+ +I FG P ++ SE A ++ +VG
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFG----PMNFGVSEE-DAKQKAREMIELVGLPEE 137
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--- 778
+ LSGGQ R+A+A + ++ +LD+ + +D + R +M M
Sbjct: 138 LLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GR----KEMME--MFYK 190
Query: 779 LQK----TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L K T +L TH+++ A AD +VVM KG V G+ ++
Sbjct: 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233
|
Length = 290 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 4e-10
Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+N L + KG + ++G GSGKS+ + + + T G I G
Sbjct: 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELR 66
Query: 669 -----SIAYVPQ-VPWILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q TI N G + Q E V + +
Sbjct: 67 EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVG---LEEYE 123
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-M 778
Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + + +
Sbjct: 124 HRYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDP-LIRDSMQDELKKLQAT 178
Query: 779 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
LQKT + TH++ +AI D +V+M G++ +G+ ++
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEI 217
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 52/229 (22%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+L+ VSL L G ++A++G G+GKS+LL ++ GE+ G + +G
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 669 SIAYVPQ-VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
A +PQ T+++ + G +P+ D+S
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-------GL 128
Query: 723 IGEKGVNLSGGQRARLALAR------AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
G LSGG++ R+ LAR LD+ SA+D +++
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD-------IAHQH--- 178
Query: 777 HMLQKTRILCT---------HNVQAISA-ADMVVVMDKGQVKWIGSSAD 815
H L+ R L H++ + AD +V++ +G+V GS D
Sbjct: 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
|
Length = 259 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 4e-10
Identities = 59/230 (25%), Positives = 106/230 (46%), Gaps = 45/230 (19%)
Query: 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
L++ N+ RY+ LH+++F+I G + IVG +G+GKS++L+ L L G
Sbjct: 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64
Query: 1276 QILVDG--LNIINTPVR-DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
++ +G ++ +++ + +LR + + F+++ FH L ++ LE
Sbjct: 65 DVIFNGQPMSKLSSAAKAELRNQ-----KLGFIYQ---------FH--HLLPDFTALENV 108
Query: 1333 -------HVK---------EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376
K E + AVGLE S G+RQ + +ARAL+ + +++
Sbjct: 109 AMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVL 168
Query: 1377 LDECTANVDAQTA----SILQNAISSECKGMTVIT----IAHRISTVLNM 1418
DE T N+DA+ A +L + V+T +A R+S L M
Sbjct: 169 ADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM 218
|
Length = 233 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 4e-10
Identities = 52/209 (24%), Positives = 99/209 (47%), Gaps = 17/209 (8%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG- 1274
Q I+ +N+ + Y AL +++ I + ++G +G GKS+ + L R+ +
Sbjct: 10 QPQIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN 67
Query: 1275 ----GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKI 1325
G++ ++G +I V +LR +V Q P F S+ DN+ H + +
Sbjct: 68 CRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 1326 WSVLEKCHVKEEVEAVGLETF--VKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
V+E A+ ET +K +S S GQ+Q +C+AR L K++ DE T+
Sbjct: 128 DGVVENAL---RSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSA 184
Query: 1384 VDAQTASILQNAISSECKGMTVITIAHRI 1412
+D + + +++ I + K T++ + H +
Sbjct: 185 LDPISTARIEDLIMNLKKDYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 25/210 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L+D++ ++ G ++G G GKS++L RL G + + I R L R
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 1296 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVKESG 1351
A++PQ EG ++R+ L + + L +W L + V + +E +
Sbjct: 78 LALLPQHHLTPEGITVRE-LVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL 136
Query: 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ--NAISSECKGMTV 1405
S GQRQ LA L + + V+ LDE T +D + +++ N +G TV
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-----QGKTV 191
Query: 1406 ITIAHRISTVLNM-----DEILILDHGHLV 1430
+T+ H LN D +++L +GH++
Sbjct: 192 VTVLHD----LNQASRYCDHLVVLANGHVM 217
|
Length = 255 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 4e-10
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L++I+F++ G I G +G GKS++L + L G +L +G +I R +
Sbjct: 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82
Query: 1296 FAVVPQSPFLFEGSLRDNL-----------DPFHMNDDLKIWSVLEKCHVKEEVEAVGL- 1343
+ Q+P LF ++ DNL DP DDL E L
Sbjct: 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDL---------------ERFALP 127
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECK 1401
+T + ++ S G++Q I L R L KVL LDE T+ +D + I +
Sbjct: 128 DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQ 187
Query: 1402 GMTVITIAHRISTVLNMDEILIL 1424
+ V+ + H + + D+++ L
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-10
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----IC-GGQI 1277
+ + ++ L D NFT+ + G +G+GK+S++N + LT I G++
Sbjct: 2 LELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
LVD I P + R V Q LF ++R NL +W + +
Sbjct: 62 LVDAEKGIFLPPE--KRRIGYVFQDARLFPHYTVRGNL-------RYGMWKS-MRAQFDQ 111
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASILQ-- 1393
V +G+E + + S G++Q + + RALL + ++L +DE A++D IL
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 1394 NAISSECKGMTVITIAHRISTVLNM-DEILILDHG 1427
+ E + ++ ++H + VL + D +++L++G
Sbjct: 172 ERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 5e-10
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQVPW 678
+L++++ + G + + GE G+GK+SLL ++ G G I A ++ ++PQ P+
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY 466
Query: 679 ILSGTIRDNILF---GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----L 730
+ GT+R+ + + ++ L L + + L
Sbjct: 467 LPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL----------DEEDRWDRVL 516
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
SGG++ RLA AR + H LD+ SA+D +
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
|
Length = 604 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 43/208 (20%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------------IAYVP 674
+ + G G+GKS+LL I G G+I +G+ I V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 675 Q----VPWILSGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
Q P + +R+N+ FG D S E L + + ++ Y +
Sbjct: 82 QQYALFPHL---NVRENLAFGLKRKRNREDRISVDELLDL----LGLDHLLN---RYPAQ 131
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRI 784
LSGG++ R+ALARA+ ++ +LD+ SA+D + R L + L I
Sbjct: 132 ----LSGGEKQRVALARALAAQPELLLLDEPFSALDRAL-RLQLLPELKQIKKNLNIPVI 186
Query: 785 LCTHN-VQAISAADMVVVMDKGQVKWIG 811
TH+ +A AD +VVM+ G++++IG
Sbjct: 187 FVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 6e-10
Identities = 97/418 (23%), Positives = 161/418 (38%), Gaps = 86/418 (20%)
Query: 442 TEKMMKQKDERIRRTGEILTHI-------RTLKMYGWEQIFSSWLMKTRSSEVK----HL 490
T + +KQ + R I +H+ T++ +G + F + K + +L
Sbjct: 1048 TSQQLKQLESEAR--SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105
Query: 491 STRKYLDAWC----VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 546
ST ++ VFF F TF A+ +Q V L L +++S
Sbjct: 1106 STLRWFQMRIDIIFVFF-------FIAVTF--IAIGTNQDGEGEVGIILTLAMNILS--- 1153
Query: 547 SFPWVINGLIDA---FISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 603
+ W +N ID S+ R+ +F+ +L Q PS G S + +
Sbjct: 1154 TLQWAVNSSIDVDGLMRSVSRVFKFI-------DLPQEEPRPS--GGGGKYQLSTVLVIE 1204
Query: 604 MQDATCSWYCNNE-----------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 652
A W + E VL +S + G V ++G GSGKS+LL++
Sbjct: 1205 NPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSA 1264
Query: 653 ILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP--Q 697
+L ++ T G I G + +PQ +I SGT R KN DP Q
Sbjct: 1265 LL-RLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFR------KNLDPYEQ 1317
Query: 698 SYSETLKACTLDVDISLMVG---GDMAYIGEK-GVNLSGGQRARLALARAVYHGSDIYML 753
E + +V + ++ + ++ G LS G + + LAR++ + I +L
Sbjct: 1318 WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377
Query: 754 DD---VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
D+ L V Q+ R L + T IL H V+A+ +V++ VK
Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQSFS-----NCTVILSEHRVEALLECQQFLVIEGSSVK 1430
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 45/224 (20%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 667
V+N VSL + +G +V ++G G+GK++ I+G + G I A
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74
Query: 668 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I Y+PQ I T+ +NIL G + + E L+ + I+
Sbjct: 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE--EKLEELLEEFHIT-------H 125
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAIMG 775
K +LSGG+R R+ +ARA+ +LD+ + VD + I L + +G
Sbjct: 126 LRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 776 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 817
+L T HNV + +S D ++ +G+V G+ ++A
Sbjct: 186 --------VLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 6e-10
Identities = 60/235 (25%), Positives = 104/235 (44%), Gaps = 22/235 (9%)
Query: 1215 FQGLIEFQNVTMRYKPSLP---AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1271
F I NV+ Y P AL++ + T + ++G TG+GKS+++ L
Sbjct: 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62
Query: 1272 ICGGQILVD------GLNIINTPVRDLRGRFAVVPQSP--FLFEGSLRDNL--DPFHMND 1321
GQ +V L I V+ LR +V Q P LF+ ++ ++ P ++ +
Sbjct: 63 SETGQTIVGDYAIPANLKKIKE-VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 1322 DLKIWSVLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+ + +K V E ++ V L E +VK S S GQ++ + LA + L LDE
Sbjct: 122 NKQ--EAYKK--VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 1381 TANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
T +D + N K +I + H + VL + DE++++ G ++ I
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232
|
Length = 289 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-10
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L +N TI+ G + ++G +G GKS++LN + L G ++++G I P D R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQ-ITEPGPD---R 56
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE-VEAVGLETFVKESGISF 1354
V L ++R+N+ ++ L S E+ + EE + VGL +
Sbjct: 57 MVVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL 115
Query: 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRI 1412
S G +Q + +ARAL KVL LDE +DA T LQ + + +TV+ + H +
Sbjct: 116 SGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV 175
Query: 1413 STVLNM-DEILILDHG 1427
L + D +++L +G
Sbjct: 176 DEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 32/183 (17%)
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298
++FT+ G + + G G GK+++L L L G++ +G T + + R
Sbjct: 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG-----TALAEQRDE--- 70
Query: 1299 VPQSPFLFEG---------SLRDNLD---PFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
P L+ G S +NL H I L AVGL F
Sbjct: 71 -PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDAL---------AAVGLTGF 120
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMT 1404
S GQ++ + LAR L + + LDE T +D ++L + + G+
Sbjct: 121 EDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 1405 VIT 1407
++T
Sbjct: 181 LLT 183
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-10
Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 34/219 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+++ V + P GSL ++G GSGKS+LL + G + G++ +G
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 670 -IAYVPQ-VPWILSGTIRDNILFGK-------NYDPQSYSETLKACTLDVDISLMVGGDM 720
+A V Q + T+RD + G+ D + + ++S + DM
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAIMGPHM 778
+ LSGG+R R+ +ARA+ + +LD+ + +D AQ+ L +
Sbjct: 136 S-------TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT-- 186
Query: 779 LQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T + H++ A S D VVV+D G+V G ++
Sbjct: 187 -GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREV 224
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 8e-10
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
L ++L + G VA+IG G+GKS+LL I + + GSI G
Sbjct: 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK 73
Query: 669 ------SIAYVPQ-VPWILSGTIRDNILFGK-NYDP------QSYSETLKACTLD----V 710
I + Q I T+ +N+L G+ Y P +SE K L V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
++ D AY + LSGGQ+ R+A+ARA+ D+ + D+ ++++D + ++ ++
Sbjct: 134 GLA-----DKAYQ--RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMD 186
Query: 771 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T I+ H V A AD +V + G++ + G+ ++L
Sbjct: 187 YLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (148), Expect = 8e-10
Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 36/231 (15%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
Y N + L + L + KGS A+IG GSGKS+LL + G + T G +
Sbjct: 11 YQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV 70
Query: 669 --------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSY------SETLKAC 706
+ V Q P + T+ ++ FG PQ++ +E + A
Sbjct: 71 SSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG----PQNFGIPKEKAEKIAAE 126
Query: 707 TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
L+ MVG + + LSGGQ R+A+A + ++ +LD+ + +D + AR
Sbjct: 127 KLE-----MVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK-AR 180
Query: 767 WILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
+ H +T +L TH + ++ AD V +++KG + G+ +D+
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231
|
Length = 288 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-10
Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 17/206 (8%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1292
L DIN I G V + G +G+GK+++L + L + G + V G + ++L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 1293 RGRFAVVPQSPFLFEGSL--RDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKE 1349
R + Q+ L G L R N+ + +L E+ +EAVGL +
Sbjct: 81 RRNIGYIFQAHNLL-GFLTARQNVQMALELQPNLSYQEARERAR--AMLEAVGLGDHLDY 137
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
+ S GQ+Q + +ARAL+ K++ DE TA +D+++ + + + G T++
Sbjct: 138 YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILI 197
Query: 1408 IAH--RISTVLNM-DEILILDHGHLV 1430
+ H RI L++ D I+ ++ G L+
Sbjct: 198 VTHDNRI---LDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 8e-10
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 37/243 (15%)
Query: 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 656
S D+ + +++ C + +E + V LN +S K + +IG GSGKS+L+ G
Sbjct: 17 SDDIILRVKNLYCV-FDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 657 MMLTHGSIHASG-----------------------------SIAYVPQVP--WILSGTIR 685
+ +G+I ++ V Q P + TI
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 686 DNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745
+I+FG SE K ++ +G D +Y+ LSGGQ+ R+A+A +
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILA 192
Query: 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDK 804
+I + D+ + +D + ++ I+ KT + TH + + AD V+VMDK
Sbjct: 193 IQPEILIFDEPTAGLDPKGEHEMM-QLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 805 GQV 807
G++
Sbjct: 252 GKI 254
|
Length = 320 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-10
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--Q 675
Q+ V + VSL + KG + A++G G GKS+LL + G T G I G +++VP Q
Sbjct: 32 QHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 676 VPWIL---------SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
P + T+ NI FG D +E V+ L + + K
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI----ASRVNEMLGLVHMQEFAKRK 146
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQR R+ALAR++ + +LD+ + A+D ++ + + + T ++
Sbjct: 147 PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 787 THNV-QAISAADMVVVMDKGQVKWIGS 812
TH+ +A++ A + +M++G+ IG
Sbjct: 207 THDQEEAMTMAGRIAIMNRGKFVQIGE 233
|
Length = 377 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 60/215 (27%), Positives = 97/215 (45%), Gaps = 24/215 (11%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
L+ V++ + G V +IG GSGKS+L+ + G + T G I G
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
+ V Q P + TI +I FG S E ++ +VG D
Sbjct: 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMN---IVGLDYEDY 137
Query: 724 GEKG-VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK- 781
+K LSGGQ+ R+A+A V I +LD+ + +D + IL N I H
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL-NKIKELHKEYNM 196
Query: 782 TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815
T IL +H+++ ++ AD ++VM+KG+ + G+ +
Sbjct: 197 TIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
|
Length = 287 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ VSL L G + ++G G+GK++L+ + + G+I G
Sbjct: 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRR 72
Query: 670 -IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT---LDVDISLMVGG-DMAYIG 724
I Y+PQ + N + Y LK + + ++ ++
Sbjct: 73 RIGYLPQEF-----GVYPNF---TVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 725 EKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQ--VARWILSNAIMGPHMLQ 780
+K + LSGG R R+ +A+A+ I ++D+ + +D + R +LS L
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE-------LG 177
Query: 781 KTR--ILCTHNVQAISA-ADMVVVMDKGQVKWIG 811
+ R IL TH V+ + + + V V++KG++ + G
Sbjct: 178 EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 27/218 (12%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHASG--------- 668
VVL+ VSL +PKG + ++IG G+GKS+LL S++ ++ G I G
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSK 71
Query: 669 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVD--ISLMVGGDMA 721
++ + Q I S T+RD + FG+ P S K ++ I + D++
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFGRF--PYSQGRLTKEDRRIINEAIEYLHLEDLS 129
Query: 722 --YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
Y+ E LSGGQR R +A + +D +LD+ L+ +D + + I+ L
Sbjct: 130 DRYLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 780 QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
KT ++ H++ S +D +V + G+V GS ++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 1e-09
Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
+N VSL + G +V +IG G+GK++L N I G + G++ G
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIA 77
Query: 670 ---IAYVPQVPWILSG-TIRDNILFGK-NYDPQSYSETLKACTLDVDISL--------MV 716
IA Q+ + G T+ +N+ G S + + V
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 717 G-GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
G G++A NLS GQ+ RL +ARA+ + +LD+ + ++ + + I
Sbjct: 138 GLGELAD--RPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 776 -PHMLQKTRILCTHNVQAI-SAADMVVVMDKGQV 807
T +L H+++ + AD +VV++ G+V
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEV 228
|
Length = 250 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ ++ Y PA L DIN T+E G + ++G +G GK+++LN + P G I
Sbjct: 1 MLQISHLYADY-GGKPA-LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSL--RDNLDPFHMNDDLKIWSVLEKCHVK 1335
+DG PV VV Q+ EG L R+ D L +++ +
Sbjct: 59 TLDG-----KPVEGPGAERGVVFQN----EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIA 109
Query: 1336 EEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
++ VGLE K S GQRQ + +ARAL + ++L LDE +DA T +Q
Sbjct: 110 HQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
Query: 1395 AISS--ECKGMTVITIAHRISTVLNMDEILIL 1424
+ + G V+ I H I + M L+L
Sbjct: 170 LLLKLWQETGKQVLLITHDIEEAVFMATELVL 201
|
Length = 255 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 40/236 (16%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG--- 1274
IE +N+ ++ LH I+ ++ G V I+G +G+GK+++L + L P G
Sbjct: 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 1275 -GQILVDG---LNIINTPVRDLRGRFAVVPQSPFLF-EGSLRDNL--DPFHMNDDLKIWS 1327
G I +D L+ +R LR V Q+ LF ++ +N+ P
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGP----------- 110
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGIS---------FSVGQRQLICLARALLKSSKVLCLD 1378
V+ K KEE A E K G++ S GQ+Q + +ARAL +V+ D
Sbjct: 111 VIVKGEPKEEATARARELLAK-VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFD 169
Query: 1379 ECTANVDAQTASILQNAISS---ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
E T+ +D + + N I E + M ++T H +S ++ D + +D G +V
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVT--HEMSFARDVADRAIFMDQGRIV 223
|
Length = 250 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 30/189 (15%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293
A ++FT+ G + + G G+GK+++L L L+P G++L++G P+ R
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNG-----GPLDFQR 68
Query: 1294 GRFAVVPQSPFLFEG---------SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGL 1343
A L+ G S+ +NL +H + D ++ L + VGL
Sbjct: 69 DSIA----RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR---------VGL 115
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-- 1401
F S GQ++ + LAR LL + LDE T +D + A++ C
Sbjct: 116 NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARG 175
Query: 1402 GMTVITIAH 1410
GM V+T
Sbjct: 176 GMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 13/200 (6%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN-ALFRLTP--IC 1273
G++ +NV++R S L ++NFTI G V ++G +G GKS++L+ + L C
Sbjct: 1 GMLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSC 58
Query: 1274 GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1332
G++ ++ + P + + ++ Q LF S+ NL F + LK +
Sbjct: 59 TGELWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNL-LFALPATLK--GNARRN 113
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
+E GL+ + + S GQR + L RALL K L LDE + +D
Sbjct: 114 AANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQF 173
Query: 1393 QNAISSECK--GMTVITIAH 1410
+ + SE + G+ + + H
Sbjct: 174 RQWVFSEVRAAGIPTVQVTH 193
|
Length = 213 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 1216 QGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
+ F + + P AL DI+F G ++G GAGKS++L L
Sbjct: 2 SPYLSFDGIGKTF----PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD 57
Query: 1274 GGQILVDGLNIINTPVRD-LRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLK-IWSVLE 1330
G IL+DG + L A++ Q L E ++ +NL + + L
Sbjct: 58 AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLL 117
Query: 1331 KCHVKEEVEAVGL----ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+E++E +G+ +T +K S+GQRQ++ +A+AL ++++V+ DE T+++ A
Sbjct: 118 NYEAREQLEHLGVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 1387 QTASILQNAISS-ECKGMTVITIAHRISTVLNMDEI 1421
+ L I +G ++ ++HR M+EI
Sbjct: 174 REIEQLFRVIRELRAEGRVILYVSHR------MEEI 203
|
Length = 501 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 60/234 (25%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 670
+Y + L ++L +PK + A+IG G GKS+LL L M G +
Sbjct: 16 YYGDKH-----ALKDINLDIPKNKVTALIGPSGCGKSTLLRC-LNRMNDLIPGARVEGEV 69
Query: 671 AY---------------------VPQVPWILSGTIRDNILFG------KNYDPQSYSET- 702
V Q P +I DN+ +G K+ + E+
Sbjct: 70 LLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESS 129
Query: 703 LKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 760
LK L +V L + + LSGGQ+ RL +ARA+ ++ ++D+ SA+
Sbjct: 130 LKKAALWDEVKDRL---------HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSAL 180
Query: 761 D----AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQV 807
D ++ I L+K T ++ THN+ QA +D G++
Sbjct: 181 DPISTLKIEELITE--------LKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
|
Length = 253 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-09
Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 32/217 (14%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
Q I +VT+ ++ AL D +FT+ GG+ +VG G+GKS++ AL + G
Sbjct: 4 QAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG 62
Query: 1276 QILVDGLNIINTPVRD-LRGRF-AVVPQS-------PFLFEGSLRDNLDPF-HMNDDLKI 1325
+I +I+ P R L+ A VPQS P L E + + + HM
Sbjct: 63 KI-----SILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM--MGRYGHMG----- 110
Query: 1326 WSVLEKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
W K ++ V A V + F S GQ++ + LARA+ + +V+ LDE
Sbjct: 111 WLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF 170
Query: 1382 ANVDAQT-ASI--LQNAISSECKGMTVITIAHRISTV 1415
VD +T A I L + E K M V T H + +V
Sbjct: 171 TGVDVKTEARIISLLRELRDEGKTMLVST--HNLGSV 205
|
Length = 272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 35/201 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTPICGGQ 1276
++EF+NV+ Y L D++F I+ G ++ IVG GAGKS++L L L P+ G
Sbjct: 321 VLEFENVSKGYDGGRLL-LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ + + I Q RD LDP D + + E +
Sbjct: 380 KVGETVKI------------GYFDQH--------RDELDP----DKTVLEELSEGFPDGD 415
Query: 1337 EVEAVG-LETF------VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
E E L F ++ S G++ + LA+ LL+ +L LDE T ++D ++
Sbjct: 416 EQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 1390 SILQNAISSECKGMTVITIAH 1410
L+ A+ + +G TV+ ++H
Sbjct: 476 EALEEAL-LDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 52/235 (22%)
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-- 653
SK++ + +Q+ T S Y E +NV + +P+G + A+IG G GKS++L S+
Sbjct: 8 ISKNIIISLQNVTIS-YGTFEAVKNVFCD-----IPRGKVTALIGPSGCGKSTVLRSLNR 61
Query: 654 ---LGEMMLTHGSIHASGSIAYVPQV---------------PWILSGTIRDNILFGK--- 692
L E G + G+ Y P+V P +I +NI FG
Sbjct: 62 MNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARIN 121
Query: 693 ----NYDPQSYSETLKACTLD--VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746
+ D KA D D + E G +LSGGQ+ RL +AR +
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKD----------KLNESGYSLSGGQQQRLCIARTIAI 171
Query: 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADM 798
++ ++D+ SA+D ++ + + H L+K T ++ THN+ QA+ +DM
Sbjct: 172 EPEVILMDEPCSALDP-ISTLKIEETM---HELKKNFTIVIVTHNMQQAVRVSDM 222
|
Length = 269 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----------------HA 666
LN VSL +P G + VIG G+GKS+L+ + T GS+ A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 667 SGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
I + Q +LS T+ N+ D E + T ++ +VG +G+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVT---ELLALVG-----LGD 132
Query: 726 KG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
K NLSGGQ+ R+A+ARA+ + + D+ SA+D + IL L
Sbjct: 133 KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGL 192
Query: 782 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
T +L TH + + D V V+ G++ G+ +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-09
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRGR 1295
D++F++ G +G+ G GAG++ ++ ALF P G + ++G + I P + +R
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 1296 FAVVPQS-------PFLFEGS--LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF 1346
A+VP+ P L G L F ++I + E + ++ + ++T
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK--MRIDAAAELQIIGSAIQRLKVKTA 395
Query: 1347 VKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAISSECKG 1402
I S G +Q LA+ LL + +VL LDE T VD I L N ++ E G
Sbjct: 396 SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE--G 453
Query: 1403 MTVITIAHRISTVLNM-DEILILDHGHLVCISFI 1435
+ +I ++ ++ VL + D +L++ G L F+
Sbjct: 454 VAIIVVSSELAEVLGLSDRVLVIGEGKL-KGDFV 486
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-09
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 47/220 (21%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRD 1291
A+ ++F + G + +VG +G+GKS+ AL RL GG+I+ +G I ++
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNLDP-----FHMNDDLKIWSVLE----KCHVKEEVEAVG 1342
LR + Q P+ +LDP + + L++ +L V +E VG
Sbjct: 399 LRRDIQFIFQDPYA-------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVG 451
Query: 1343 LET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQ 1393
L + E FS GQRQ IC+ARAL + KV+ DE + +D Q ++L
Sbjct: 452 LLPEHAWRYPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLL 507
Query: 1394 NA----------ISSECKGMTVIT-IAHRISTVLNMDEIL 1422
+ IS + M V+ I+HR++ V+ + +I+
Sbjct: 508 DLQRDFGIAYLFISHD---MAVVERISHRVA-VMYLGQIV 543
|
Length = 623 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1287
A+ +N I I+G +G GKS+ L A+ R L P C G ++ DG +I T
Sbjct: 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFH-MNDDLKIWSVLEKCHVK----EEVE 1339
LR + +V Q P F S+ DN+ H +ND ++ ++EK K +EV
Sbjct: 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS 173
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE 1399
+ ++ + S GQ+Q +C+AR L ++L LDE T+ +D + + +++ I E
Sbjct: 174 -----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLI-QE 227
Query: 1400 CKGMTVITI 1408
+G I I
Sbjct: 228 LRGSYTIMI 236
|
Length = 286 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-09
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 54/227 (23%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTP---- 1288
AL DI G + ++G +GAGKSS+L L L G + + G + TP
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK-----CHV----KEEVE 1339
+R+LR +V Q + NL P H+ +V + C V K++
Sbjct: 77 IRELRRNVGMVFQ---------QYNLWP-HL-------TVQQNLIEAPCRVLGLSKDQAL 119
Query: 1340 A--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1387
A + L+ + + S GQ+Q + +ARAL+ +VL DE TA +D AQ
Sbjct: 120 ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 1388 TASILQNAISSECKGMTVITIAHRI-------STVLNMDEILILDHG 1427
SI++ + G+T + + H + S V+ M+ I++ G
Sbjct: 180 IVSIIRELAET---GITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 24/193 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR---LTPIC--GGQILVDGLNII--NT 1287
AL +IN I I+G +G GKS+ + L R L P G+IL NI +
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVEAV---- 1341
V +LR +V Q P F S+ DN+ P KI + +K + E VE
Sbjct: 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGP-------KIHGIKDKKTLDEIVEKSLRGA 151
Query: 1342 ----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
L+ + ++ S GQ+Q +C+AR L V+ +DE T+ +D + ++ +
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 1398 SECKGMTVITIAH 1410
K ++I + H
Sbjct: 212 ELKKDYSIIIVTH 224
|
Length = 271 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 39/210 (18%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL D++F + G ++G++GR GAGKS++L L + P G + V G +
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG-RV---------- 85
Query: 1295 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF 1346
S L F L R+N+ ++N L S E +E+ L F
Sbjct: 86 -------SSLLGLGGGFNPELTGRENI---YLNGRLLGLSRKEIDEKIDEIIEFSELGDF 135
Query: 1347 ----VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1401
VK +S G + + A A +L +DE A DA Q + K
Sbjct: 136 IDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 1402 GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
G TVI ++H S++ + D L+L+ G +
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKGKIR 221
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 45/221 (20%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------------- 668
VS L +G +A+IGE GSGKS+L + G + T G I +
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 669 -----SIAYVP--QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG--GD 719
+ + P ++ IL +R N + +P+ + + TL MVG D
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLN----TDLEPEQRRKQIFE-TLR-----MVGLLPD 141
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
A L+ GQ+ R+ALARA+ I + D+ L+++D + R L N ++ +
Sbjct: 142 HANYYPH--MLAPGQKQRVALARALILRPKIIIADEALASLDMSM-RSQLINLML--ELQ 196
Query: 780 QKTRILCTHNVQAISA----ADMVVVMDKGQVKWIGSSADL 816
+K I + Q I +D V+VM +G+V GS+AD+
Sbjct: 197 EKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADV 237
|
Length = 267 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 34/211 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL ++L + G +V + G GSGK++LL I G + GS+ G
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+I Y+ Q +L T R N+ P + + + ++ +G + Y
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--- 781
NLSGGQ+ R+A+ARA+ H + + D+ +A+D++ R ++ ++QK
Sbjct: 140 H---NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE-------LMQKLAR 189
Query: 782 ----TRILCTHNVQAISAADMVVVMDKGQVK 808
T ++ TH+ + + AD +V M+ G++
Sbjct: 190 EQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1287
A+ D+N IE + +G +G GKS++L L R+ + G++L+DG ++
Sbjct: 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78
Query: 1288 -PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE----AV 1341
PV +R +V Q P F S+RDN+ LK+ V K + E VE
Sbjct: 79 DPV-AVRRTIGMVFQRPNPFPTMSIRDNVVA-----GLKLNGVRNKKDLDELVEKSLRGA 132
Query: 1342 GLETFVKES----GISFSVGQRQLICLARALLKSSKVLCLDE-CTA 1382
L VK+ G S GQ+Q +C+ARA+ VL +DE C+A
Sbjct: 133 NLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSA 178
|
Length = 258 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 21/179 (11%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
D++FT+ G + I G GAGK+++L L L G++ G I N
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES------- 72
Query: 1298 VVPQSPFLFEG---SLRDNLDPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETFVKES 1350
L+ G ++ L ++L W + E + VGL
Sbjct: 73 --YHQALLYLGHQPGIKTELTAL---ENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
S GQ++ + LAR L + + LDE +D + ++L +++ G+ ++T
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 4e-09
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 13/221 (5%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-- 1274
G I ++ + Y + L D++ IE G + ++G++G GK+++L A+ G
Sbjct: 4 GGIRIDHLRVAYGANT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1333
G+I + ++ + P RG A++ Q+ LF + DN+ F + K+
Sbjct: 62 GRIAIADRDLTHAPPHK-RG-LALLFQNYALFPHLKVEDNV-AFGLRAQ-KMPKADIAER 117
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT-ASIL 1392
V + ++ VGL S G +Q I +ARA+ VL LDE + +DA A++
Sbjct: 118 VADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMR 177
Query: 1393 QN--AISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ A+ E +T++ + H L + D+ I+ G L
Sbjct: 178 EEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 4e-09
Identities = 58/212 (27%), Positives = 98/212 (46%), Gaps = 28/212 (13%)
Query: 616 EEEQNV-VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 669
E+E +V LN VS + KG V++IG+ GSGKS+ I G G + G
Sbjct: 15 EKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE 74
Query: 670 --------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I V Q P + T+ D++ FG E +K VD +L+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR----VDEALLAVNM 130
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMG 775
+ + + LSGGQ+ R+A+A + +I +LD+ S +D ++ R I + I
Sbjct: 131 LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI--HEIKE 188
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
+ L T + TH++ +++D ++VM G++
Sbjct: 189 KYQL--TVLSITHDLDEAASSDRILVMKAGEI 218
|
Length = 277 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 21/201 (10%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 669
L +SL +P+GS A++G G+GKS+LL + G + G + G
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSK 80
Query: 670 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ V Q P + S T+ D++ FG P + V+ +L + +
Sbjct: 81 VGLVFQDPDDQVFSSTVWDDVAFG----PVNMGLDKDEVERRVEEALKAVRMWDFRDKPP 136
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+LS GQ+ R+A+A + D+ +LD+ ++ +D + ++ + H KT I+ T
Sbjct: 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME-ILDRLHNQGKTVIVAT 195
Query: 788 HNVQ-AISAADMVVVMDKGQV 807
H+V A AD V+V+ +G+V
Sbjct: 196 HDVDLAAEWADQVIVLKEGRV 216
|
Length = 274 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 32/203 (15%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
+LN +S L G + G G GKS+LL + + T G++ G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 670 ---IAYVPQVPWILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
++Y Q P + T+ DN++F + DP + + L+ L I
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTIL-------- 131
Query: 722 YIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
K + LSGG++ R++L R + + +LD++ SA+D ++ I Q
Sbjct: 132 ---TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH-NVNEIIHRYVREQ 187
Query: 781 KTRIL-CTHNVQAISAADMVVVM 802
+L TH+ I+ AD V+ +
Sbjct: 188 NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 35/215 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-LGEM----MLTHGSIHASGSIAYVP 674
VL+ + L + G +VA+IG GSGK++LL I L E + G I + +
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 675 Q----------VPWILSG-------TIRDNILFG----KNYDPQSYSETLKACTLDVDIS 713
Q V ++ T+ +NI+ G K + + + V ++
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA 135
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
G + +Y LSGGQ+ R+A+ARA+ ++ + D+ SA+D ++ +L N I
Sbjct: 136 ---GKETSYPRR----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL-NTI 187
Query: 774 MGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 807
++T ++ TH + A AD + MD+G++
Sbjct: 188 RQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
|
Length = 250 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 52/206 (25%), Positives = 98/206 (47%), Gaps = 20/206 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSIL---NALFRLTPIC- 1273
++ +N+ + Y L A+ ++ I +G +G GKS+IL N L L P
Sbjct: 10 VLRTENLNVYYGSFL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR 67
Query: 1274 -GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNL------DPFHMNDDLK 1324
G++ G N+ V ++R R +V Q P F S+ DN+ + + + D
Sbjct: 68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ L + + +EV+ +K+SG+S S GQ+Q +C+ARA+ +V+ +DE + +
Sbjct: 128 VERSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSAL 182
Query: 1385 DAQTASILQNAISSECKGMTVITIAH 1410
D + ++ + + T+I + H
Sbjct: 183 DPISTLRIEELMHELKEQYTIIIVTH 208
|
Length = 264 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P + E + V + Y L AL D++ I + +G +G GKS++L R+ +
Sbjct: 16 PDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI 73
Query: 1274 GGQILVDGLNIINTPVRD-------LRGRFAVVPQSPFLFEGSLRDNL------DPFHMN 1320
G + L + + D LR + +V Q P F S+ +N+ + + N
Sbjct: 74 PGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN 133
Query: 1321 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
D + L + + EEV+ +KE G + S GQ+Q +C+ARA+ VL +DE
Sbjct: 134 LDELVEDSLRRAAIWEEVKDK-----LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRI 1412
+ +D + ++ + T+I + H +
Sbjct: 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 43/203 (21%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 682
++ VS + +G + ++GE G GKS+L ILG T G I
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI------------------ 70
Query: 683 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMA--YIGEKGVNLSGGQRARLAL 740
+ GK+ S E + L++ + + + Y E LSGGQR R+ +
Sbjct: 71 -----LFEGKDITKLSKEERRER-VLELLEKVGLPEEFLYRYPHE----LSGGQRQRIGI 120
Query: 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR----ILCTHN---VQAI 793
ARA+ + + D+ +SA+D V IL N + LQ+ + +H+ V+ I
Sbjct: 121 ARALALNPKLIVADEPVSALDVSVQAQIL-NLLKD---LQEELGLTYLFISHDLSVVRYI 176
Query: 794 SAADMVVVMDKGQVKWIGSSADL 816
S D + VM G++ IG + ++
Sbjct: 177 S--DRIAVMYLGKIVEIGPTEEV 197
|
Length = 268 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-09
Identities = 47/214 (21%), Positives = 94/214 (43%), Gaps = 27/214 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
++ V+ + +G + +G G+GK++ + + + T G+ +G
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 669 SIAYVPQ---VPWILSGTIRDNI-LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
SI VPQ V L+G R+N+ + G+ Y + + L+ ++
Sbjct: 67 SIGIVPQYASVDEDLTG--RENLEMMGRLYG---LPKDEAEERAE---ELLELFELGEAA 118
Query: 725 EKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
++ V SGG R RL +A ++ H D+ LD+ + +D + R + + I T
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRR-AIWDYIRALKEEGVTI 177
Query: 784 ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+L TH + +A D + ++D G++ G+ +L
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 5e-09
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 41/211 (19%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
AL DI+F I G +VGI+G GAGKS++L + + G++ V G +
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG---------KV-- 90
Query: 1295 RFAVVPQSPFL-----FEGSL--RDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGLETF 1346
+P + F+ L R+N+ ++ + + E +E+ L F
Sbjct: 91 -------APLIELGAGFDPELTGRENI---YLRGLILGLTRKEIDEKVDEIIEFAELGDF 140
Query: 1347 VKESGISFSVGQRQLICLARALLKSSK--VLCLDECTANVDAQ----TASILQNAISSEC 1400
+ + ++S G LA ++ + +L LDE A DA L +
Sbjct: 141 IDQPVKTYSSGMY--ARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE--- 195
Query: 1401 KGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
K T++ ++H + + D + L+HG +
Sbjct: 196 KNKTIVLVSHDLGAIKQYCDRAIWLEHGQIR 226
|
Length = 249 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 5e-09
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 28/162 (17%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ-VP 677
+L VSL L G + ++G G+GKS+LL + GE+ G + + Y+ Q P
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76
Query: 678 WILSGTIRDNIL--FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV------- 728
T+ D ++ FG+ + + E A D D L+ + G
Sbjct: 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAE 136
Query: 729 ----------------NLSGGQRARLALARAVYHGSDIYMLD 754
+LSGG R R+ALARA+ D+ +LD
Sbjct: 137 EALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
|
Length = 530 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 23/209 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
+ ++ T G+ G++G G+GKS++L L G + + G+++ R R
Sbjct: 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARR 76
Query: 1296 FAVVPQ-SPFLFEGSLRDNL----DPFHMNDDLKIWSVLEKCH----VKEEVEAVGLETF 1346
A+V Q S ++RD + P +W+ + H V + L
Sbjct: 77 VALVEQDSDTAVPLTVRDVVALGRIPH-----RSLWA-GDSPHDAAVVDRALARTELSHL 130
Query: 1347 VKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQTASILQNAISSE--CKG 1402
+ S G+RQ + +ARAL + K+L LDE T ++D AQ ++ A+ E G
Sbjct: 131 ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL---ALVRELAATG 187
Query: 1403 MTVITIAHRISTVLNM-DEILILDHGHLV 1430
+TV+ H ++ + D +++LD G +V
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVV 216
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L+ +S L +GS VA++G GSGKS+L+ + + G+I +G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
++ V Q P + T+ ++ FG KN+ +SE +A + VG
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSED-EAKEKALKWLKKVGLSEDL 138
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
I + LSGGQ R+A+A + + +I LD+ + +D + R + T
Sbjct: 139 ISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE-GRKEMMQLFKDYQKAGHT 197
Query: 783 RILCTHNVQAISA-ADMVVVMDKGQV 807
IL THN+ ++ AD V+V++ G++
Sbjct: 198 VILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 6e-09
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 55/231 (23%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
L+ VSL + G + A++GE G+GKS+L+ + G G I G
Sbjct: 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 670 ---IAYVPQ----VPWILSGTIRDNILFGK---------NYDPQSYSETLKACT---LDV 710
IA V Q VP + ++ +NI G+ + + LD+
Sbjct: 82 AAGIATVHQELSLVPNL---SVAENIFLGREPTRRFGLIDRK-AMRRRARELLARLGLDI 137
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
D +VG +LS QR + +ARA+ + + +LD+ +A+ + L
Sbjct: 138 DPDTLVG-----------DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETE-RLF 185
Query: 771 NAIMGPHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
+ I L+ I +H + + AD + V+ G + +G+ A
Sbjct: 186 DLI---RRLKAQGVAIIYISHRLDEVFEIADRITVLRDG--RVVGTRPTAA 231
|
Length = 500 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 6e-09
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 43/224 (19%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 667
V+N VSL + G +V ++G G+GK++ I+G + G I A
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRAR 78
Query: 668 GSIAYVPQVPWILSG-TIRDNIL-----FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I Y+PQ I T+ DNI+ K+ E L A + I+
Sbjct: 79 LGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-------H 131
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI--LSNAIMG 775
K +LSGG+R R+ +ARA+ +LD+ + VD + R I L + +G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 776 PHMLQKTRILCT-HNV-QAISAADMVVVMDKGQVKWIGSSADLA 817
+L T HNV + + D ++ G+V GS ++
Sbjct: 192 --------VLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 47/195 (24%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT-- 1287
A+ D++ + I+G +G GKS++L ++ R+ + G+IL+D +I +
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78
Query: 1288 -PVRDLRGRFAVVPQSPFLFEG-SLRDN-LDPFHMNDDLK-------IWSVLEKCHVKEE 1337
PV +R R +V Q P F S+ DN + + +N + + S L++ + +E
Sbjct: 79 DPV-SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDE 137
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
V+ +K + + S GQ+Q +C+AR + +V+ +DE + +D + ++ I
Sbjct: 138 VK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 1398 SECKGMTVITIAHRI 1412
+ T+I + H +
Sbjct: 193 ELKEKYTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 6e-09
Identities = 51/191 (26%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILV--DGLNIINT 1287
AL +IN + ++G +G GKS+ L R+ + G+I++ D +NI++
Sbjct: 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90
Query: 1288 PVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLET 1345
V ++R R ++V Q P F S+ +N+ +K S+LE+ V+ + L
Sbjct: 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAALWD 149
Query: 1346 FVKES----GISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
VK+ + S GQ+Q +C+ARAL ++L DE T+ +D + ++ IS
Sbjct: 150 EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN 209
Query: 1402 GMTVITIAHRI 1412
+T++ + H +
Sbjct: 210 KVTILIVTHNM 220
|
Length = 265 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 39/218 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 672
VL+ ++ + G VA+IG GSGKS++L ++ + G I G Y
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 673 VPQVPWILSGTIRDNI--LFGKNYDPQSYSETLKACTLD--VDISLMVGG---------- 718
VP L +R+ I +F QS++ LD + ++V G
Sbjct: 75 VPADEKHLR-QMRNKIGMVF------QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRA 127
Query: 719 ----DMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
DM + +K LSGGQ+ R+A+ARA+ + + D+V SA+D ++ +L+
Sbjct: 128 MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLN 187
Query: 771 NAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQV 807
T +L TH + A AD V DKG++
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 9e-09
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 50/218 (22%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT------------PICGGQILVDGL 1282
AL ++ I + ++G +G GKS+ L L R+ + G I DG+
Sbjct: 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119
Query: 1283 NIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---------------------DPFHMND 1321
N++ +LR R +V QSP F S+R+N+ D D
Sbjct: 120 NLV-----ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAED 174
Query: 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
+L + L + + +EV + ++ + S GQ+Q +C+AR L +V+ +DE
Sbjct: 175 EL-VERSLRQAALWDEV-----NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPA 228
Query: 1382 ANVDAQTASILQNAISSECKGMTVITIAH------RIS 1413
+ +D S +++ I + TV+ + H RIS
Sbjct: 229 SALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS 266
|
Length = 305 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 1e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 14/196 (7%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASG 668
+EEQNV + V+ ++ E GSG+ S + G+++L I
Sbjct: 1244 GDEEQNVGMKNVNE-------FSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRN 1296
Query: 669 SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ V Q P + + +I +NI FGK + + K +D I + +G G
Sbjct: 1297 LFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYG 1356
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
+LSGGQ+ R+A+ARA+ I +LD+ S++D+ + I + KT I
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
Query: 788 HNVQAISAADMVVVMD 803
H + +I +D +VV +
Sbjct: 1417 HRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-08
Identities = 53/217 (24%), Positives = 101/217 (46%), Gaps = 30/217 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH-------------ASG 668
VL+ V L + +GSLV ++G G+GK++LL +I G + T G++ AS
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 669 SIAYVPQVPWI-LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+A VPQ + +R + G+ + + V+ ++ G +
Sbjct: 78 RVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV 137
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA-------QVARWILSNAIMGPHMLQ 780
+LSGG+R R+ LARA+ + + +LD+ +++D ++ R ++ +
Sbjct: 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDG-------- 189
Query: 781 KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
KT + H++ A D +V++ G+V+ G AD+
Sbjct: 190 KTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226
|
Length = 402 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 24/233 (10%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M +I C Y ++E LN ++ P+ S +AVIG G+GKS+L G +
Sbjct: 1 MHLIETRDLCYSYSGSKE----ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP 56
Query: 660 THGSIHASGS-------------IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLK 704
T GS+ G + V Q P I S T+ +I FG P + +
Sbjct: 57 TSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG----PINLGLDEE 112
Query: 705 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
V +L + G +LSGG++ R+A+A + + +LD+ + +D Q
Sbjct: 113 TVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172
Query: 765 ARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
+ ++ P T I TH + + AD + VMDKG++ G+ ++
Sbjct: 173 VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-08
Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 47/200 (23%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG----------S 669
+L VS G L A++G G+GKS+LLN++ G G + +G
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729
I YVPQ D+IL TL V +LM + +G
Sbjct: 84 IGYVPQ----------DDILHP---------------TLTVRETLMFAAKL-----RG-- 111
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LSGG+R R+++A + + LD+ S +D+ A ++S + +T I H
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMS-LLRRLADTGRTIICSIHQ 170
Query: 790 VQA--ISAADMVVVMDKGQV 807
+ D ++++ +G+V
Sbjct: 171 PSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 29/222 (13%)
Query: 612 YCNNEE-EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-- 668
Y +NEE + + L+ V+L + KG + ++G GSGKS++ + ++ + G ++ G
Sbjct: 14 YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLD 73
Query: 669 ------------SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
V Q P I++ + +++ FG P++ + VD SL
Sbjct: 74 TSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG----PENLGIPPEEIRERVDESL 129
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
G Y LSGGQ+ R+A+A + + + D+ + +D R ++ N I
Sbjct: 130 KKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV-NTIK 188
Query: 775 GPHMLQK----TRILCTHNVQAISAADMVVVMDKGQVKWIGS 812
L K T IL TH ++ AD ++VMD G+V G+
Sbjct: 189 E---LNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 45/232 (19%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG----------EMMLTHGSIHAS 667
Q+ L+ V L + G +VA++G GSGKS+LL + G + L ++
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74
Query: 668 GSIA-----------YV-PQVPWILSGTIRDNILFG------------KNYDPQSYSETL 703
G +A Y+ Q + ++ +N+L G + + L
Sbjct: 75 GRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL 134
Query: 704 KACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
+A T VG M + + V+ LSGGQ+ R+A+ARA+ + + + D+ ++++D
Sbjct: 135 QALT-------RVG--MVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDP 185
Query: 763 QVARWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSS 813
+ AR ++ T ++ H V A+ + +V + +G V + GSS
Sbjct: 186 ESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
|
Length = 262 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 43/227 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
Q V +N VSL + +G + ++G GSGKS+LL I + T G + G
Sbjct: 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKE 95
Query: 669 --------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
S A +P T+ +N+ FG +E + ++
Sbjct: 96 LRELRRKKISMVFQSFALLPHR------TVLENVAFGLEVQGVPRAEREERAAEALE--- 146
Query: 715 MVG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+VG Y E LSGG + R+ LARA+ DI ++D+ SA+D + R + +
Sbjct: 147 LVGLEGWEHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLI-RREMQD 201
Query: 772 AIMGPH-MLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
++ LQKT + TH++ +A+ D + +M G++ +G+ ++
Sbjct: 202 ELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 1e-08
Identities = 65/259 (25%), Positives = 109/259 (42%), Gaps = 13/259 (5%)
Query: 1180 TETEKEMVSLERVLEYMDVPQE----ELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAA 1235
T E+ + E + E M+ P+ ++ P G+ +N+ ++PS A
Sbjct: 888 TREERALEKTEPLTEEMEDPEHPEGINDSFFERELPGL-VPGVC-VKNLVKIFEPSGRPA 945
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
+ +N T +G GAGK++ L+ L L P G +LV G + I T + +R
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD-IETNLDAVRQS 1004
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE--VEAVGLETFVKESGIS 1353
+ PQ LF F+ + W E+ ++ E +E GL E
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSW---EEAQLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S G ++ + +A A + +KV+ LDE T+ VD + + + + G T+I H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 1414 TV-LNMDEILILDHGHLVC 1431
L D I I+ G L C
Sbjct: 1122 EADLLGDRIAIISQGRLYC 1140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 45/214 (21%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVPW- 678
L VS +PKG V + G G+GKS+LL I GE T G I +G ++ + ++P+
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 679 -------------ILSGTIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ T+ +N+ GK P+ + LD +VG
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKP--PREIRRRVSE-VLD-----LVG--- 126
Query: 721 AYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ I+
Sbjct: 127 --LKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM-RLFEEI 183
Query: 777 HMLQKTRILCTHNVQAISAADM---VVVMDKGQV 807
+ L T ++ TH+++ + M V+ ++ G++
Sbjct: 184 NRLGTTVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 39/206 (18%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------------LGEMMLTHGSIHAS 667
V+L+ ++L + KG + A+IGE GSGKS+LLN I G+ S AS
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 668 ----GSIAYVPQ-VPWILSGTIRDNILFGKNYDPQSYSETLKA---CTLDVDISLMVGGD 719
+ Y+ Q I + T+ +N+ G Y S E + V ++L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNL----- 126
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ +K LSGG++ R+ALARA+ + + D+ ++D + + ++ +L
Sbjct: 127 --KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKN-----RDEVL-DLLL 178
Query: 780 Q-----KTRILCTHNVQAISAADMVV 800
+ KT I+ TH+ + AD V+
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 52/216 (24%), Positives = 90/216 (41%), Gaps = 33/216 (15%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------- 669
L VS +PKG +++G GSGKS++ ++G + G I +
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 670 IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSET---LKACTLDVDISLMVGGDMAYIG 724
I V Q P + ++ ++ FG Y E + VD+ +
Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDM-------LERAD 137
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR- 783
+ LSGGQ+ R+A+A + + +LD+ S +D AR L + + ++
Sbjct: 138 YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD-ARQNLLDLV---RKVKSEHN 193
Query: 784 ---ILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
I TH++ AD V+VM+KG V G+ ++
Sbjct: 194 ITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
|
Length = 269 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 56/221 (25%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+LN +SL LP G + A+IG G GKS+LL + G++
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKN-----------YDPQSYSETLKACTLDVDISLMV 716
+A +PQ G T+R+ + +G++ D ++ ++ ++
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN------- 129
Query: 717 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--QVARWILSNAI 773
+A ++ + +LSGGQR R LA + + + +LD+ + +D QV +
Sbjct: 130 --HLA---DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV-------EL 177
Query: 774 MGPHMLQ------KTRILCTHNV-QAISAADMVVVMDKGQV 807
M +++ KT + H++ QA D +VV+ G V
Sbjct: 178 MR--LMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216
|
Length = 255 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 62/218 (28%), Positives = 99/218 (45%), Gaps = 40/218 (18%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPICGGQILVDGLNIINTPVRDL 1292
L+D++ +E G + I+G +G+GK+++L+A+ GQIL +G +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK- 81
Query: 1293 RGRFAVVPQSPFLFEG-SLRDNLD-------PFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1344
A V Q L G ++R+ L P +D ++ K+ VE V L
Sbjct: 82 --CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----------KKRVEDVLLR 129
Query: 1345 ---------TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
VK GI S G+R+ + +A LL KVL LDE T+ +D+ TA L +
Sbjct: 130 DLALTRIGGNLVK--GI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVST 185
Query: 1396 ISSECK-GMTVITIAHRI-STVLNM-DEILILDHGHLV 1430
+S + VI H+ S + + D IL+L G +V
Sbjct: 186 LSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 56/215 (26%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DG---LNIINTPV- 1289
+H+ + IE G ++G +G+GKS++L A+ L P+ G +LV DG +++ N
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA 98
Query: 1290 --RDLR-GRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLE---KCHVKEEVE 1339
R LR R ++V Q P+ ++ +N+ F L++ + + + V E++E
Sbjct: 99 TLRRLRTHRVSMVFQQFALLPWR---TVEENV-AF----GLEMQGMPKAERRKRVDEQLE 150
Query: 1340 AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN---AI 1396
VGL + S G +Q + LARA + +L +DE + +D + LQ+ +
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 1397 SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
S+ K T++ ++H + L + + I I++ G ++
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEGGRII 244
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 61/225 (27%), Positives = 98/225 (43%), Gaps = 39/225 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+ +NV++ + L D++ ++ G + ++G GAGKS+++ + L G I
Sbjct: 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQS-------PFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330
R+ + R VPQ P LR L P +D I L+
Sbjct: 62 -----------KRNGKLRIGYVPQKLYLDTTLPLTVNRFLR--LRPGTKKED--ILPALK 106
Query: 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQT 1388
+ ++A K SG G+ Q + LARALL ++L LDE T VD Q
Sbjct: 107 RVQAGHLIDA----PMQKLSG-----GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157
Query: 1389 ASI-LQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVC 1431
A L + + E V+ ++H + V+ DE+L L+H H+ C
Sbjct: 158 ALYDLIDQLRREL-DCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200
|
Length = 251 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 19/224 (8%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I F++V+ Y AL + F + G + G +GAGKS++L + + G+I
Sbjct: 1 MIRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1278 LVDGLNII---NTPVRDLRGRFAVVPQSP-FLFEGSLRDNLD-PFHM----NDDLKIWSV 1328
G +I N V LR + ++ Q L + ++ DN+ P + DD++
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR--- 116
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQ 1387
V ++ VGL K I S G++Q + +ARA++ VL DE T N+D A
Sbjct: 117 ----RVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMD-EILILDHGHLV 1430
+ IL+ G+TV+ H I + +L L GHL
Sbjct: 173 SEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-08
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 18/199 (9%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
VL+ +SL + KG + +G G+GK++ + ILG + G I G
Sbjct: 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74
Query: 682 GTIRDNILFGKNYDPQSYSETLKA-CTL------DVDISLMVGGDMAYIGEKGVNLSGGQ 734
G + + F Y + E L+ L +D L V G +K S G
Sbjct: 75 GALIEAPGF---YPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGM 131
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARW----ILSNAIMGPHMLQKTRILCTHNV 790
+ RL +A A+ D+ +LD+ + +D + ILS G +L + +L +
Sbjct: 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL--SEI 189
Query: 791 QAISAADMVVVMDKGQVKW 809
Q + AD + +++KG++
Sbjct: 190 QKV--ADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 665
+Y +EQ L+ VS+ +P+ + A+IG G GKS+ L I L + G +
Sbjct: 48 FY---GDEQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102
Query: 666 ASGSIAY---------------VPQVPWILSGTIRDNILFG-------KNYDPQSYSETL 703
G Y V Q P +I DN+ +G + D + E+L
Sbjct: 103 FRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID-ERVEESL 161
Query: 704 KACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ L +V L G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 162 RRAALWDEVKDQL---------DSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 762 AQVARWILSNAIMGPHMLQKTRILCTHNVQ 791
I ++ + T ++ THN+Q
Sbjct: 213 PVATSKI--EDLIEELAEEYTVVIVTHNMQ 240
|
Length = 285 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 3e-08
Identities = 50/213 (23%), Positives = 80/213 (37%), Gaps = 72/213 (33%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ Y L L DI+ TI G ++G+VGR GAGKS+ L +L I G
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLVGRNGAGKST----LLKL--IAGELEP 52
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV 1338
+G + Q
Sbjct: 53 DEG-----IVTWGSTVKIGYFEQ------------------------------------- 70
Query: 1339 EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398
S G++ + LA+ LL++ +L LDE T ++D ++ L+ A+
Sbjct: 71 ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
Query: 1399 ECKGMTVITIAH-R--ISTVLNMDEILILDHGH 1428
G TVI ++H R + V +I+ L+ G
Sbjct: 116 Y-PG-TVILVSHDRYFLDQVAT--KIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 26/210 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----C 1273
IE N+ + Y + + ++ I ++G +G GKS++L RL +
Sbjct: 5 IETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV 62
Query: 1274 GGQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEG-SLRDN----------LDPFHMN 1320
G++ + G NI + V ++R +V Q P F ++ DN +
Sbjct: 63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKEL 122
Query: 1321 DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
D+ W+ L+K + +EV+ + + + S GQRQ + +ARAL K+L +DE
Sbjct: 123 DERVEWA-LKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAH 1410
TAN+D + ++ + K T++ + H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 38/171 (22%)
Query: 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN--ALFRLTPICGGQIL 1278
+ ++ MR+ + T+E G +V I+G +GAGKS++LN A F LTP G +
Sbjct: 11 YHHLPMRF-----------DLTVERGERVAILGPSGAGKSTLLNLIAGF-LTP-ASGSLT 57
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----------MNDDLKIWSV 1328
++G + TP + P S LF+ +NL H +N LK+ +
Sbjct: 58 LNGQDHTTTPP-------SRRPVS-MLFQ---ENNLFS-HLTVAQNIGLGLNPGLKL-NA 104
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379
++ + +G+E + S GQRQ + LAR L++ +L LDE
Sbjct: 105 AQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155
|
Length = 232 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRD 1291
A++D+NF++ G +GIVG +G+GKS AL L GG +G I+N P ++
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90
Query: 1292 L-RGR---FAVVPQSPFLFEGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEE--------V 1338
L + R +++ Q P +L+P+ + + L +L K K E +
Sbjct: 91 LNKLRAEQISMIFQDPM-------TSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRML 143
Query: 1339 EAVGLETFVKESGI---SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASI 1391
+AV + K + FS G RQ + +A ALL K+L DE T +D AQ ++
Sbjct: 144 DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNM-DEILIL 1424
L N + E +I I H + V + D++L++
Sbjct: 204 L-NELKREF-NTAIIMITHDLGVVAGICDKVLVM 235
|
Length = 330 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-08
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ Q V Y + I+ + G + +VG +G GKS++L + L I G+I
Sbjct: 4 LKLQAVRKSYDGKTQV-IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 1279 VDGLNIINT--PV-RDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
+ G ++N P RD+ A+V Q+ L+ S+R+N M LKI + K +
Sbjct: 63 IGG-RVVNELEPADRDI----AMVFQNYALYPHMSVREN-----MAYGLKIRGM-PKAEI 111
Query: 1335 KEEVEAV----GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+E V LE + S GQRQ + + RA+++ V DE +N+DA
Sbjct: 112 EERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167
|
Length = 356 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 3e-08
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 22/209 (10%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---- 1274
I+ ++++ Y S A+ I+ I I+G +G GKS+ + L R++ + G
Sbjct: 8 IKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 1275 -GQILVDGLNIINTPVR--DLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
G + G NI + + LR + +V Q P F S+ +N+ ++I + L +
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENV-----AYGVRISAKLPQ 120
Query: 1332 CHVKEEVEAV----GLETFVKE----SGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ E VE+ L VK+ S + S GQ+Q +C+ARAL KVL +DE +
Sbjct: 121 ADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSA 180
Query: 1384 VDAQTASILQNAISSECKGMTVITIAHRI 1412
+D ++ I S +T+ + H +
Sbjct: 181 LDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 58/233 (24%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--- 1274
++ F V+ Y ALH+++ I G V ++G GAGK+++L L CG
Sbjct: 5 MLSFDKVSAHYGKI--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL------CGDPR 56
Query: 1275 ---GQILVDGLNIINTPV-RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1329
G+I+ DG +I + + +R A+VP+ +F ++ +NL M
Sbjct: 57 ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENL---AMGGFFA----- 108
Query: 1330 EKCHVKEEVEAVG------LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTAN 1383
E+ +E ++ V E ++ +G + S G++Q++ + RAL+ ++L LDE +
Sbjct: 109 ERDQFQERIKWVYELFPRLHERRIQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167
Query: 1384 VDAQTASILQNAISSECK-----GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ A I+ I + GMT+ + + L + D +L++GH+V
Sbjct: 168 L----APIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV 216
|
Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 25/222 (11%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E + VT + A+ +I+F + G G++G GAGK++ + L G+I
Sbjct: 3 LEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVK 1335
+G ++ +++ R +P+ E L + D LK + L K ++
Sbjct: 61 WNGGP-LSQEIKN---RIGYLPE-----ERGLYPKMTVE---DQLKYLAELKGMPKAEIQ 108
Query: 1336 EEVEAVGLE----TFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
++++A LE K I S G +Q I A++ ++L LDE + +D
Sbjct: 109 KKLQAW-LERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167
Query: 1391 ILQNAI-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+L++AI + +G T+I +HR+ V + D +L+L G V
Sbjct: 168 LLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209
|
Length = 300 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 55/203 (27%), Positives = 90/203 (44%), Gaps = 49/203 (24%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG-- 668
L +S+ + + S+VA IG G GKS+ L N ++ GE+ + +I+ G
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 714
++ V Q P +I +N+ +G + Q ETLK L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK- 137
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILS 770
+ E LSGGQ+ RL +ARA+ + ++D+ SA+D A+V I
Sbjct: 138 ------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI-- 189
Query: 771 NAIMGPHMLQK--TRILCTHNVQ 791
H L+K T ++ THN+Q
Sbjct: 190 ------HELKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHAS 667
+ + V L +PK + A IG G GKS++L N ++ G++ +++A
Sbjct: 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82
Query: 668 G--------SIAYVPQVPWILSGTIRDNILFGK-------NYDPQSYSETLKACTL--DV 710
I V Q P +I DNI +G + D + +L+ L +V
Sbjct: 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD-ELVERSLRQAALWDEV 141
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
L + G++LSGGQ+ RL +ARA+ ++ ++D+ SA+D I
Sbjct: 142 KDKLK---------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRI-- 190
Query: 771 NAIMGPHMLQKTRILCTHNV-QAISAADM 798
+M Q T I+ THN+ QA +DM
Sbjct: 191 EELMHELKEQYTIIIVTHNMQQAARVSDM 219
|
Length = 264 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-08
Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 20/226 (8%)
Query: 1218 LIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
L+E +++ Y PS L I+ I G V IVG +G+GKS+++N L L
Sbjct: 4 LLELKDIRRSY-PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 1275 GQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVL 1329
G V G ++ L R F F+F+ L +L + +++ L
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFG------FIFQRYHLLSHLTAAQNVEVPAVYAGL 116
Query: 1330 EKCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
E+ + +GLE V+ S GQ+Q + +ARAL+ +V+ DE T +D
Sbjct: 117 ERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 1386 AQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ + + + +G TVI + H + ++ + G +V
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 5e-08
Identities = 71/273 (26%), Positives = 121/273 (44%), Gaps = 35/273 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL----GEMMLTHGSIHAS-------- 667
LN SL K + VIG GSGKS+++ N ++ G+ ++ +I A+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 668 ---GSIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
I V Q P + TI +I FG ++ E K + +V Y
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLK---LVQLPEDY 143
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+ LSGGQ+ R+ALA + + +LD+ +D + + N + K
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFI-NLFERLNKEYKK 202
Query: 783 R-ILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE 840
R I+ THN+ Q + AD V+VM +G+V IGS ++ +S E T + + +
Sbjct: 203 RIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI--------FSNQELLTKIEIDPPK 254
Query: 841 M-RTNASSANKQILLQEKDVVSVSDDAQEIIEV 872
+ + NK I L K++ ++ + A+E+ +V
Sbjct: 255 LYQLMYKLKNKGIDLLNKNIRTIEEFAKELAKV 287
|
Length = 289 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 32/203 (15%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M + ++ +C E + + + +S L G + + G G+GK++LL + G +
Sbjct: 1 MMLEAENLSC------ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP 54
Query: 660 THGSIHASGS-IAYVPQVP-----WI--LSG-----TIRDNILFGKNYDPQSYSETLKAC 706
G ++ G I V + ++ G T +N+ F + + + T+
Sbjct: 55 DAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEA 114
Query: 707 TLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-V 764
V +A + + V LS GQ+ R+ALAR + +++LD+ +A+D + V
Sbjct: 115 LAQVG--------LAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
Query: 765 ARWILSNAIMGPHMLQKTRILCT 787
A A+M H Q +L T
Sbjct: 167 ALL---TALMAAHAAQGGIVLLT 186
|
Length = 209 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-08
Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNI-INTPVRDLRG 1294
D++F++ G +GI G GAG++ ++ LF P G+I +DG + I P + +
Sbjct: 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMN----------DDLKIWSVL----EKCHVKEEVEA 1340
A+VP E RD + P M D S + E + E ++
Sbjct: 339 GIAMVP------EDRKRDGIVPV-MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQR 391
Query: 1341 VGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASI--LQNAI 1396
+ ++T E I S G +Q LA+ LL + K+L LDE T +D I L N +
Sbjct: 392 LKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451
Query: 1397 SSECKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
+ G+ +I I+ + VL + D +L++ G L
Sbjct: 452 VQQ--GVAIIVISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 27/236 (11%)
Query: 1215 FQGLIEFQNV--TMRYKPSL-----PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1267
+ L+E +N+ T RY+ A+ ++FT+ G + I+G G+GKS++ L
Sbjct: 1 VETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 1268 RLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN------LD-PFH 1318
+ G++L+D L+ + R R R ++ Q P SL LD P
Sbjct: 61 GMIEPTSGELLIDDHPLHFGDYSYRSQRIR--MIFQDP---STSLNPRQRISQILDFPLR 115
Query: 1319 MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+N DL+ EK + E + VGL + GQ+Q + LARAL+ KV+
Sbjct: 116 LNTDLEP-EQREK-QIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173
Query: 1378 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
DE A++D S L N + E +G++ I + + + ++ D++L++ G +V
Sbjct: 174 DEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
Length = 267 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-08
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLRG 1294
++D++FT+ G +G+ G GAG++ ++ L+ P G + +DG + +P L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 1295 RFAVVPQSP----FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG-------L 1343
+ + + S+++N+ + + L+ +E +AV +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKH---ADEQQAVSDFIRLFNI 384
Query: 1344 ETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQ--NAISSE 1399
+T E I S G +Q + +AR L+ KVL LDE T VD I Q N +E
Sbjct: 385 KTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHL 1429
G+++I ++ + VL M D IL++ G +
Sbjct: 445 --GLSIILVSSEMPEVLGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
++ ++ V+ +G A++G+ GSGKS+L+ +I + T G++
Sbjct: 19 EHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78
Query: 669 -------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGG 718
I V Q P + T+ I+FG KN+ + +K + + L
Sbjct: 79 YIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN--LDEVKNYAHRLLMDLGFSR 136
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
D+ + + +SGGQ ++A+ + DI +LD+ + +D Q R ++ +
Sbjct: 137 DV--MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMR-------L 187
Query: 779 LQ-------KTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
L+ KT IL +H++ ++ AD V+VM +G + S +L
Sbjct: 188 LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV---------DGLNII 1285
AL++I++T E I+G +G+GKS+++ L G I V + +I
Sbjct: 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100
Query: 1286 NTPV-------RDLRGRFAVVPQSP--FLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
P ++LR R ++V Q P LF+ ++ ++ + L + K K
Sbjct: 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSEAKKLAKF 158
Query: 1337 EVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ +GL +++++ S S GQ++ + +A L ++L DE TA +D + +
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218
Query: 1396 I-SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
I ++ TV I H + VL + DE++++D G ++
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
Length = 320 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 8e-08
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 41/177 (23%)
Query: 615 NEEEQNVV-LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI---HASGS- 669
+ V+ ++ SL + +G + ++G GSGKS+LL ++ G ++ GS+ GS
Sbjct: 31 LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV 90
Query: 670 -----------------IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTL 708
++ V Q +PW T+ +N+ FG +E K
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWR---TVEENVAFGLEMQGMPKAERRKR--- 144
Query: 709 DVDISL-MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
VD L +VG GE LSGG + R+ LARA + I ++D+ SA+D
Sbjct: 145 -VDEQLELVGLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP-----Q 675
L + +G VA++G G+GKS+LLN I G + GS+ H + + P Q
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 676 VPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734
+ S T+ NI G +P + L I+ +G + + LSGGQ
Sbjct: 79 ENNLFSHLTVAQNIGLG--LNPGLKLNAAQREKLH-AIARQMGIE-DLLARLPGQLSGGQ 134
Query: 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ-AI 793
R R+ALAR + I +LD+ SA+D + + +L+ Q T ++ +H+++ A
Sbjct: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAA 194
Query: 794 SAADMVVVMDKGQVKWIGSSADL 816
A +V+ G++ W G + +L
Sbjct: 195 RIAPRSLVVADGRIAWDGPTDEL 217
|
Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 48/209 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 672
+ + + K + A+IG GSGKS+ L S L M T +G I Y
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRS-LNRMNDTIDIARVTGQILYRGIDINRKEI 94
Query: 673 -----------VPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 711
V Q P + +I +NI F K + +LK L V
Sbjct: 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK 154
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
L + + LSGGQ+ RL +ARA+ DI ++D+ SA+D ++ L
Sbjct: 155 DDL---------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDP-ISTMQLEE 204
Query: 772 AIMGPHMLQK--TRILCTHNV-QAISAAD 797
+ L+K T I+ THN+ QA A+D
Sbjct: 205 TMF---ELKKNYTIIIVTHNMQQAARASD 230
|
Length = 267 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 54/220 (24%), Positives = 93/220 (42%), Gaps = 49/220 (22%)
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------- 668
+ LP + A+ G GSGK+SL+N I G G I +G
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 669 -SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
I YV Q P T+R N+ +G ++ D ++L+ G +
Sbjct: 76 RRIGYVFQDARLFPHY---TVRGNLRYGMWKSMRAQ--------FDQLVALL--GIEHLL 122
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
LSGG++ R+A+ RA+ ++ ++D+ L+++D R IL L++ R
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILP-------YLERLR 175
Query: 784 -------ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815
+ +H++ + AD VVV++ G+VK G +
Sbjct: 176 DEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEE 215
|
Length = 352 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG---EMMLTHGSIHASG---------- 668
+LN VSL + G ++A++G GSGK++LL++I G T G I +G
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 669 SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+AYV Q +L G T+R+ + + + + L D++L G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 765
G +SGG+R R+++A + + +LD+ S +D+ A
Sbjct: 142 KG-----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 9e-08
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 22/201 (10%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
DIN I G V VG +G GKS++L + L I G + + + + P + RG
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE-RG-VG 78
Query: 1298 VVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVG----LETFVKE 1349
+V QS P L S+ +N M+ LK+ +K + + V V L +
Sbjct: 79 MVFQSYALYPHL---SVAEN-----MSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDR 129
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
+ S GQRQ + + R L+ V LDE +N+DA ++ IS K G T+I
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189
Query: 1408 IAHRISTVLNM-DEILILDHG 1427
+ H + + D+I++LD G
Sbjct: 190 VTHDQVEAMTLADKIVVLDAG 210
|
Length = 369 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L+ VSL + KG + + G G+GK++LL + G + + G + +G
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 669 --SIAYVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDM 720
I V Q +L T+ +N+ GK + + A L VG
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGK--KEREIQRRVGA-ALR-----QVG--- 126
Query: 721 AYIGEKGVN----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ K LSGG++ R+A+ARA+ + + + D+ +D ++ IL + +
Sbjct: 127 --LEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERIL-DLLKRL 183
Query: 777 HMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 806
+ T I+ TH++ + A V+++D G+
Sbjct: 184 NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 45/206 (21%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI--LGEMMLT---HGSIHASGSIAY 672
+ +L V+L +PK S+ A+IG G GKS+ + ++ + +++ G I+ G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 673 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL- 708
P Q P +I DN+ +G +++ + E+LKA L
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 709 -DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767
+V L D + +G LSGGQ+ RL +AR + ++ ++D+ SA+D ++
Sbjct: 134 DEVKDKL----DKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALDP-ISTT 183
Query: 768 ILSNAIMGPHMLQK--TRILCTHNVQ 791
+ + I H L++ T ++ THN+Q
Sbjct: 184 KIEDLI---HKLKEDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 44/231 (19%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M++ + T + QN L++VS KG +V +G G+GKS+ + I G +
Sbjct: 1 MSIRVSSLTKLY-----GTQNA-LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP 54
Query: 660 THGSIHASG------------SIAYVPQ-VPWILSGTIRDNILF-GKNY--DPQSYSETL 703
GS+ G +I Y+P+ P L +R+ + F Y Q + +
Sbjct: 55 DSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRV 114
Query: 704 KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
+ +++ + IG+ LS G R R+ LA+A+ H + +LD+ + +D
Sbjct: 115 EEM---IELVGLRPEQHKKIGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-- 165
Query: 764 VARWILSNAIMGPHML------QKTRILCTHNVQAISA-ADMVVVMDKGQV 807
N ++ + KT IL TH +Q + A D V++++KG++
Sbjct: 166 ------PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 52/245 (21%), Positives = 97/245 (39%), Gaps = 59/245 (24%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----- 669
+ ++ VS L KG ++ ++GE GSGKS L +I+G + + I G
Sbjct: 13 TDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARI-VGGEILFDG 71
Query: 670 ------------------IAYVPQVP-------WILSGTIRDNILFGKNYDPQSYSETLK 704
IA + Q P + I + + + ++ +
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKE-R 130
Query: 705 ACTLDVDISLMVGGDMAYIGEKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSA 759
A +++ +VG E+ + LSGG R R+ +A A+ + + D+ +A
Sbjct: 131 A----IELLELVGIPDP---ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 760 VDAQVARWILSNAIMGPHMLQKTR-------ILCTHNVQAIS-AADMVVVMDKGQVKWIG 811
+D V IL +L++ + IL TH++ ++ AD V VM G++ G
Sbjct: 184 LDVTVQAQILD-------LLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236
Query: 812 SSADL 816
++
Sbjct: 237 PVEEI 241
|
Length = 316 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 45/201 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHASG-- 668
L+ +SL + + A+IG G GKS+ L + GE++L +I+
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVDI 712
+ V Q P +I +N+ +G K Y + +L+ L +V
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD 141
Query: 713 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772
L E + LSGGQ+ RL +ARA+ ++ ++D+ SA+D +A +
Sbjct: 142 RL---------HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP-IATQKIEEL 191
Query: 773 IMGPHMLQK--TRILCTHNVQ 791
I H L+ T I+ THN+Q
Sbjct: 192 I---HELKARYTIIIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-07
Identities = 34/89 (38%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 788
LSGGQR R+A+ R + +++LD+ LS +DA + R + I H L +T I TH
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL-RVQMRIEISRLHKRLGRTMIYVTH 192
Query: 789 N-VQAISAADMVVVMDKGQVKWIGSSADL 816
+ V+A++ AD +VV+D G+V +G +L
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
Length = 369 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 39/199 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV----DGLNIINTPVR- 1290
L +++ ++ G V + G +G+GKS++L +L+ GQILV + ++++ R
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 1291 --DLRGR--------FAVVPQ--------SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
++R V+P+ P L G R+ K +L +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVA-------RAKAADLLTRL 139
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
++ E + ++ TF SG G++Q + +AR + +L LDE TA++DA +++
Sbjct: 140 NLPERLWSLAPATF---SG-----GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191
Query: 1393 QNAIS-SECKGMTVITIAH 1410
I ++ +G ++ I H
Sbjct: 192 VELIREAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-07
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 35/208 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L ++N I+ G V +VG++GAGK+++L + G + + P +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS- 456
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS- 1353
A++P G + + L S + E+ + +G+S
Sbjct: 457 --ALIP-------GEYEPEFGEVTILEHL--RSKTGDLNAAVEI--------LNRAGLSD 497
Query: 1354 ----------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--K 1401
S GQ++ LA+ L + VL +DE A++D TA + IS
Sbjct: 498 AVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA 557
Query: 1402 GMTVITIAHR--ISTVLNMDEILILDHG 1427
G+T+I + HR + L D ++++ +G
Sbjct: 558 GITLIVVTHRPEVGNALRPDTLILVGYG 585
|
Length = 593 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 67/245 (27%), Positives = 104/245 (42%), Gaps = 55/245 (22%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L + IE +V +VGR GAGKS+++ L G +L DG I + R
Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKIL------NGEVLLDDGRIIYEQDLIVAR-- 70
Query: 1296 FAVVPQSP----------FLFEG--SLRDNLDPFH--------------MNDDLKIWSVL 1329
+ Q P F+ EG + L +H +N+ K+ L
Sbjct: 71 ---LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQL 127
Query: 1330 EKCH---------VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+ H + E + +GL+ S S S G + L RAL+ + VL LDE
Sbjct: 128 D--HHNLWQLENRINEVLAQLGLDPDAALS--SLSGGWLRKAALGRALVSNPDVLLLDEP 183
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVCISFICRYF 1439
T ++D +T L+ + + +G ++I I+H S + NM I+ LD G LV S+ Y
Sbjct: 184 TNHLDIETIEWLEGFLKT-FQG-SIIFISHDRSFIRNMATRIVDLDRGKLV--SYPGNYD 239
Query: 1440 IFLLG 1444
+LL
Sbjct: 240 QYLLE 244
|
Length = 635 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 63/238 (26%), Positives = 106/238 (44%), Gaps = 48/238 (20%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICG 1274
IE +N+ ++ L +H ++ T++ G + +VG +G+GKS A + P
Sbjct: 5 IELRNIALQAAQPL---VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 1275 GQILVDGLNIINTPV--RDLRGR-FAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLE 1330
G++L+DG PV LRGR A + Q+P R +P H M+ E
Sbjct: 62 GRVLLDG-----KPVAPCALRGRKIATIMQNP-------RSAFNPLHTMHT-----HARE 104
Query: 1331 KCHVK----------EEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
C +EAVGLE +K S G Q + +A ALL + +
Sbjct: 105 TCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIA 164
Query: 1378 DECTANVD----AQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
DE T ++D A+ +L++ + GM ++T H + V + D++ ++ HG +V
Sbjct: 165 DEPTTDLDVVAQARILDLLESIVQKRALGMLLVT--HDMGVVARLADDVAVMSHGRIV 220
|
Length = 254 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 24/204 (11%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------- 669
+ L+ +S + KG + ++G G+GK++ + ILG ++ G + G
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNR 71
Query: 670 IAYVPQVPWILSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
I Y+P+ G + D ++ Y Q + +D L Y
Sbjct: 72 IGYLPEE----RGLYPKMKVIDQLV----YLAQLKGLKKEEARRRIDEWLERLELSEYAN 123
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
++ LS G + ++ AV H ++ +LD+ S +D V +L + I KT I
Sbjct: 124 KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP-VNVELLKDVIRELARAGKTVI 182
Query: 785 LCTHNVQAISA-ADMVVVMDKGQV 807
L TH ++ + D V++++KG+
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRA 206
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-07
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
V +N SL + +G + ++G GSGKS+L+ + + T G I G
Sbjct: 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Query: 669 -----SIAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGD 719
I+ V Q +P T+ +N+ FG +E + +++ + G
Sbjct: 102 ELRRKKISMVFQSFALLPHR---TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA 158
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
Y E LSGG + R+ LARA+ + DI ++D+ SA+D + + + L
Sbjct: 159 DKYPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 780 QKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGS 812
+KT + TH++ A+ D + +M G++ +G+
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248
|
Length = 386 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 30/214 (14%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
+ VL VSL + KG +VA++G GSGKS+LL+ + G T G + +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSS 74
Query: 669 ---------SIAYVPQVPWILSG-TIRDNI---LFGKNYDPQSYSETLKACTLDVDISLM 715
+ ++ Q +L T +N+ L + E V +
Sbjct: 75 NERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-- 132
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
I + LSGG+R R+A+ARA+ + + + D+ +D A+ I + ++
Sbjct: 133 -----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIF-DLMLE 186
Query: 776 PHMLQKTR-ILCTHNVQAISAADMVVVMDKGQVK 808
+ T ++ TH+++ D V+ M GQ+
Sbjct: 187 LNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 36/187 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---- 1291
++FT+ G + + G G+GK+++L + L P G I +DG +I + V +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL---EKCHVKEEVEAVGLETFVK 1348
L R A+ P L ++ +NL+ F W+ E+ + +EAVGL
Sbjct: 78 LGHRNAM---KPAL---TVAENLE-F--------WAAFLGGEELDIAAALEAVGL----- 117
Query: 1349 ESGIS------FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK- 1401
+ ++ S GQ++ + LAR L+ + + LDE TA +DA ++ I +
Sbjct: 118 -APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176
Query: 1402 -GMTVIT 1407
G+ +
Sbjct: 177 GGIVIAA 183
|
Length = 207 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 17/199 (8%)
Query: 1241 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1300
+ + G +G++G GAGK+++L A+ L P G + V G VP
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAG-----ASPGKGWRHIGYVP 55
Query: 1301 QSPFLFEGSLRDNLDPFH--MNDDLKIWSVLEK------CHVKEEVEAVGLETFVKESGI 1352
Q E + + H M+ L + V++ + VGL
Sbjct: 56 QR---HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHR 1411
S GQRQ + +ARAL VL LDE +D T +L G ++ H
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHD 172
Query: 1412 ISTVLNMDEILILDHGHLV 1430
++ + + ++L +G ++
Sbjct: 173 LAQAMATCDRVVLLNGRVI 191
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 57/238 (23%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 665
+Y +N V+ V L +P+ + A++G G GKS+LL + L E G +
Sbjct: 13 YYGSNH-----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 666 ASGSIAYVPQVPWILSG----------------TIRDNILFGKNYD---------PQSYS 700
G Y P V I TI DN+ G + +
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 701 ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 760
LK L ++ + + NLSGGQR RL +ARA+ I ++D+ + +
Sbjct: 128 WALKKAALWDEVK-------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANI 180
Query: 761 D----AQVARWILSNAIMGPHMLQK--TRILCTHN-VQAISAADMVVVMDKGQVKWIG 811
D A++ + L+K T +L TH+ QA +D V + G++ +G
Sbjct: 181 DPVGTAKIEELLFE--------LKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 27/194 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-------DGLNIINT 1287
L +++ T+ G V + G +GAGKS++L +L+ G+ILV D
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 1288 PVRDLRGR--------FAVVPQSPFL--FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
V ++R + V+P+ L L + P + +L + ++ E
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVP-REAARARARELLARLNIPER 141
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
+ + TF SG G++Q + +AR + +L LDE TA++DA ++ I+
Sbjct: 142 LWHLPPATF---SG-----GEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIA 193
Query: 1398 S-ECKGMTVITIAH 1410
+ +G +I I H
Sbjct: 194 EAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 53/217 (24%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-----FRLTPICGGQILVDGLNIINTPV- 1289
L +N T++ G I+G G+GKS++ + + +T G+IL DG +I+
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVT---EGEILFDGEDILELSPD 76
Query: 1290 -RDLRGRFAVVPQSPFLFEG-SLRDNL----------DPFHMNDDLKIWSVLEKCHVKEE 1337
R G F + Q P G + D L ++ E + EE
Sbjct: 77 ERARAGIF-LAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE 135
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
LE +V E FS G+++ + + LL K+ LDE + +D I+ I+
Sbjct: 136 F----LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN 188
Query: 1398 S-ECKGMTVITIAH--RISTVLNMDEILILDHGHLVC 1431
+ +G V+ I H R+ + D++ +L G +V
Sbjct: 189 ALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 44/225 (19%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
+ VS + +G + ++G G+GK++ + + + T G +G
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREV 71
Query: 669 --SIAYVPQ---VPWILSGTIRDNI-LFGKNYD------PQSYSETLKACTLDVDISLMV 716
I V Q V L+G +N+ + + Y + E L L
Sbjct: 72 RRRIGIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGL-------- 121
Query: 717 GGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR---WILSNA 772
+ A ++ V SGG R RL +AR++ H ++ LD+ +D Q R W
Sbjct: 122 -LEAA---DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ-TRAHVWEYIEK 176
Query: 773 IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+ + T +L TH + +A D V ++D G++ G+ +L
Sbjct: 177 LKEEFGM--TILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 112/549 (20%), Positives = 199/549 (36%), Gaps = 75/549 (13%)
Query: 281 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLS 340
GLL +N ++ L L +FL G L + ++ ++ + + + +
Sbjct: 31 GLLAFINQALIETADTSLLVLPEFL----GLL--LLFMVSSLISQLGLTTLGQHFIY--- 81
Query: 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW--SL 398
KLRS + +K L L + ++ D R ++ A S ++
Sbjct: 82 ----KLRSEFI----KKILDTPLERIERLGSARLLAGLTSDV-RNISFAFSRLPELVQAI 132
Query: 399 PFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ----KDERIR 454
+G A YL Y K +T++ I V W ++ K M +D+
Sbjct: 133 ILTLGSAAYLAYLSPKM-----FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187
Query: 455 RTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 512
IL + L + E + ++ L + E +H R W + L
Sbjct: 188 DYQTILEGRKELTLNRERAEYVHNN-LYIPDAQEYRHHIIRANTFHLLAVNW-SNIMLLG 245
Query: 513 LFTFGLFALMGHQL-----DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567
L GL + L + A + LF L +PL S ++ L+ A ++ ++ +
Sbjct: 246 LI--GLVFWLALSLGWASTNVAATIVLVLLF--LRTPLLSAVGILPTLLTAQVAFNKIAK 301
Query: 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVS 627
+ YK + + P + L +++ ++ ++ + ++
Sbjct: 302 L-ELAPYKADFPRPQAFPDW--KTLE----------LRNVRFAY-----QDNAFHVGPIN 343
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP---WILSGTI 684
L + +G LV +IG GSGKS+L + G G I G Q+ + S
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 685 RDNILF-----GKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738
D LF + PQ + L+ L SL G + + LS GQ+ RL
Sbjct: 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLN-DGRFS-----NLKLSTGQKKRL 457
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADM 798
AL A+ DI +LD+ + D R + KT +H+ AD
Sbjct: 458 ALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADR 517
Query: 799 VVVMDKGQV 807
++ M GQ+
Sbjct: 518 LLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-07
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 25/209 (11%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296
+I+ + G +G+ G GAG++ + L+ L P GG+I+++G I L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 1297 AVVP---QSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1352
+P QS L+ + L N+ N W +K E LE + + I
Sbjct: 341 VYLPEDRQSSGLYLDAPLAWNVCALTHN-RRGFW-------IKPARENAVLERYRRALNI 392
Query: 1353 SF----------SVGQRQLICLARALLKSSKVLCLDECTANVD-AQTASILQNAISSECK 1401
F S G +Q + +A+ L S ++L +DE T VD + I Q S +
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 1402 GMTVITIAHRISTVLNM-DEILILDHGHL 1429
+ V+ I+ + + M D +L++ G +
Sbjct: 453 NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1250 GIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIINTPVR--DLRGRFAVVPQS 1302
I+G +G GKS+ L L R+ + G++ NI V LR + ++V
Sbjct: 37 AIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPK 96
Query: 1303 PFLFEGSLRDNL---------DPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
P LF S+ DN+ P DD+ + S L+ + +E++ + +S +
Sbjct: 97 PNLFPMSVYDNVAYGVKIVGWRPKLEIDDI-VESALKDADLWDEIK-----HKIHKSALD 150
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHR 1411
S GQ+Q +C+ARAL KVL +DE +D + +++ I S +T++ ++H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHN 210
Query: 1412 ISTVLNMDEILILDHGH 1428
+ V + + G+
Sbjct: 211 LHQVSRLSDFTAFFKGN 227
|
Length = 261 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668
L V+L + GS A IG GSGKS+++ + G + T GS+
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYS-ETLKACTLDVDISLMVGGDMAY 722
+ V Q P + T+ ++ FG PQ++ +A L + +VG +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFG----PQNFGVSQEEAEALAREKLALVGISESL 138
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+ LSGGQ R+A+A + I +LD+ + +D + R L H T
Sbjct: 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK-GRKELMTLFKKLHQSGMT 197
Query: 783 RILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816
+L TH + ++ AD V V++KG++ G D+
Sbjct: 198 IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
Length = 280 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 60/217 (27%), Positives = 91/217 (41%), Gaps = 35/217 (16%)
Query: 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEM 657
I+Q + S Y N ++ LN VSL + A+IG GSGKS+LL SI L
Sbjct: 5 ILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE 60
Query: 658 MLTHGSIHASGSIAYVP---------------QVPWILSGTIRDNILFGKNYDPQSYSET 702
+ GSI +G Y P Q P +I +N+++G +
Sbjct: 61 VTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQV 120
Query: 703 LKACTLDVDISLMVGGDM-----AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 757
L V+ SL G + + + + LSGGQ+ R+ +AR + I +LD+
Sbjct: 121 LDEA---VEKSL-KGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 758 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
SA+D A I + T +L T ++Q S
Sbjct: 177 SALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 25/195 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG 668
+ L V L +P ++A IG G GKS+LL + G ++ +I+ S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 669 --------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ V Q P +I +NI F + Y L D + ++
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN--GYKGNLDELVEDSLRRAAIWEEV 151
Query: 721 A-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ EKG LSGGQ+ RL +ARA+ D+ ++D+ SA+D R + +
Sbjct: 152 KDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-- 209
Query: 780 QKTRILCTHNVQAIS 794
Q T I+ THN+Q S
Sbjct: 210 QYTIIMVTHNMQQAS 224
|
Length = 274 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 5e-07
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 39/200 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L ++ G + I+G +G+GKS+ L + L G I+V+G I VRD G+
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI--NLVRDKDGQ 78
Query: 1296 FAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWS---VLEKCHVKEEVEAVGL------- 1343
V ++ LR L H N +WS VLE ++ ++ +GL
Sbjct: 79 LKVADKNQL---RLLRTRLTMVFQHFN----LWSHMTVLENV-MEAPIQVLGLSKQEARE 130
Query: 1344 --ETFVKESGIS----------FSVGQRQLICLARALLKSSKVLCLDECTANVD----AQ 1387
++ + GI S GQ+Q + +ARAL +VL DE T+ +D +
Sbjct: 131 RAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 1388 TASILQNAISSECKGMTVIT 1407
I+Q ++ E K M V+T
Sbjct: 191 VLRIMQQ-LAEEGKTMVVVT 209
|
Length = 257 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 5e-07
Identities = 33/167 (19%), Positives = 62/167 (37%), Gaps = 42/167 (25%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFG 691
G ++ ++G GSGK++L ++ E+ G + + G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVI-------------YIDGE-------- 39
Query: 692 KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
D+ ++ + +G K + SG R RLALA A D+
Sbjct: 40 -----------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82
Query: 752 MLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCTHNVQAIS 794
+LD++ S +DA+ +L + +L K ++ T N +
Sbjct: 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDL 129
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--QVP 677
L+ +++ + G V ++G G+GKS+LL I E + T G+I +G ++ + +P
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 678 W--------------ILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 720
+ + + +N+ F P+ + + A V +S
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS---HKHR 131
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
A E LSGG++ R+A+ARA+ + I + D+ +D I+ N + +
Sbjct: 132 ALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM-NLLKKINKAG 186
Query: 781 KTRILCTHN 789
T ++ TH
Sbjct: 187 TTVVVATHA 195
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 43/221 (19%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
+ + L +S + KG +V IG G+GK++ L + G + T G + +G V
Sbjct: 28 KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV 84
Query: 674 P-------------------QVPWILSGTIRDNILFGK---NYDPQSYSETLKACTLDVD 711
P Q+ W L + D+ + P + + L + +D
Sbjct: 85 PWKRRKKFLRRIGVVFGQKTQLWWDLP--VIDSFYLLAAIYDLPPARFKKRLDELSELLD 142
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+ ++ + LS GQR R +A A+ H +I LD+ +D VA+ + N
Sbjct: 143 L-----EELLDTPVR--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV-VAQENIRN 194
Query: 772 AIMGPHMLQKTR----ILCTHNVQAISA-ADMVVVMDKGQV 807
+ + R +L +H ++ I A A V+V+DKG++
Sbjct: 195 FL---KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRL 232
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 49/206 (23%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297
++ + G + +VG GAGKS++L + L P G I G + +L R R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 1298 VVPQSPFLFEGSLRDNLDPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
+ Q F + F D + + E EA+GL+ + S
Sbjct: 74 LSQQQTPPF------AMPVFQYLTLHQPDKTRTEAVAS-ALNEVAEALGLDDKLGRSVNQ 126
Query: 1354 FSVGQRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTV 1405
S G+ Q + LA +L+ + ++L LDE ++D + L +S C +G+ V
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 1406 ITIAHRISTVL-NMDEILILDHGHLV 1430
+ +H ++ L + D + +L G L+
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLL 212
|
Length = 248 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 35/187 (18%)
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296
++FT+ G V I G GAGK+S+L L L G++L G P+R R +
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG-----EPIRRQRDEY 72
Query: 1297 AVVPQSPFLFEGSL---RDNLDPF----------HMNDDLKIWSVLEKCHVKEEVEAVGL 1343
L+ G + L DD +W L + VGL
Sbjct: 73 H----QDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ---------VGL 119
Query: 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE-CTANVDAQTASILQNAISSECK- 1401
F S GQ++ + LAR L + + LDE TA +D Q + L+ ++ +
Sbjct: 120 AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA-IDKQGVARLEALLAQHAEQ 178
Query: 1402 -GMTVIT 1407
GM ++T
Sbjct: 179 GGMVILT 185
|
Length = 204 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 59/235 (25%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY +L ++L + K + A IG G GKS+ L + GE+
Sbjct: 14 WY-----GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68
Query: 659 LTHGSIHA--------SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 709
+ +++ + V Q P +I DN+ +G P+ + LD
Sbjct: 69 IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG----PKLHGLAKNKKKLDE 124
Query: 710 -VDISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
V+ SL G +G++ LSGGQ+ RL +ARA+ + ++D+ SA+D V
Sbjct: 125 IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP-V 183
Query: 765 ARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
A ++ N I L+K T I+ TH++ QA +D V G++ ++ ++
Sbjct: 184 ATNVIENLI---QELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 9e-07
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 23/209 (11%)
Query: 627 SLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------S 669
SL + +G + ++G GSGKS+++ + + T G + G
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 670 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
IA V Q ++ T+ DN FG + E + LD +L G Y
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREK-ALD---ALRQVGLENYAHSYPD 163
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGG R R+ LARA+ DI ++D+ SA+D + + + Q+T + +H
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISH 223
Query: 789 NV-QAISAADMVVVMDKGQVKWIGSSADL 816
++ +A+ D + +M G+V +G+ ++
Sbjct: 224 DLDEAMRIGDRIAIMQNGEVVQVGTPDEI 252
|
Length = 400 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 45/222 (20%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L++++ +++ G V ++GR+G GKS++ L L G + G P+ L
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRG-----EPLAKLNRA 82
Query: 1296 ------------F-----AVVPQSPFLFEGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEE 1337
F AV P+ ++R+ + P L L + E
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRK------TVREIIREPLRHLLSLDKAERLAR--ASEM 134
Query: 1338 VEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ AV L K S GQ Q +CLARAL K+L LDE +N+D +LQ
Sbjct: 135 LRAVDLDDSVLDKRPP-QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189
Query: 1396 ISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ K G + I H + V ++++D+G +V
Sbjct: 190 VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIV 231
|
Length = 268 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 52/221 (23%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VL VSL + +G V ++G G GKS+L +LG G++ G
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85
Query: 669 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
S + V P+ V I+ +R ++ +E L L +
Sbjct: 86 FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED-- 143
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
+ LSGGQ R+ +ARA+ + +LD+ +S +D + IL
Sbjct: 144 --------ADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE---- 191
Query: 775 GPHMLQKTR-------ILCTHNVQAI-SAADMVVVMDKGQV 807
+L+K + + TH+++ + S V VMDKGQ+
Sbjct: 192 ---LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 57/197 (28%), Positives = 81/197 (41%), Gaps = 40/197 (20%)
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGS--------------- 669
+ K + IG G GKS++L S+ L + G +H G
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 670 IAYVPQVPWILSGTIRDNILFG------KNYDPQSYSETLKACTL--DVDISLMVGGDMA 721
I V Q P S +I DN+ FG K L+ L +V L V
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKV----- 145
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
G++LSGGQ+ RL +ARA+ ++ +LD+ SA+D R + +M
Sbjct: 146 ----SGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV--EELMVELKKDY 199
Query: 782 TRILCTHNV-QAISAAD 797
T L THN+ QAI AD
Sbjct: 200 TIALVTHNMQQAIRVAD 216
|
Length = 261 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 60/239 (25%), Positives = 99/239 (41%), Gaps = 79/239 (33%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------I 670
V+ + L + G + ++G G GKS+LL + G +T G I G I
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDI 78
Query: 671 AYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLK----------------ACTLDV 710
A V Q P + ++R+N+ +G LK A L++
Sbjct: 79 AMVFQNYALYPHM---SVRENMAYG-----------LKIRGMPKAEIEERVAEAARILEL 124
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ--VARWI 768
+ + K LSGGQR R+A+ RA+ +++ D+ LS +DA+ V
Sbjct: 125 E---------PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV---- 171
Query: 769 LSNAIMGPHM------LQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
M L + T + TH+ V+A++ AD VVVM+ G + IG+ ++
Sbjct: 172 --------QMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEV 222
|
Length = 356 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 62/225 (27%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
V + VSL + KG + A++GE G+GKS+L+ + G G I G
Sbjct: 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAI 77
Query: 670 ---IAYVPQ----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISL 714
I V Q VP + T+ +NI+ G E K +D ++S
Sbjct: 78 RLGIGMVHQHFMLVP---TLTVAENIILG--------LEPSKGGLIDRRQARARIKELSE 126
Query: 715 MVGGDM---AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD---VLSAVDAQVARW- 767
G + A + + LS G++ R+ + +A+Y G+ + +LD+ VL+ +
Sbjct: 127 RYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLT--PQEADELF 180
Query: 768 -ILSNAI-MGPHMLQKTRILCTH---NVQAISAADMVVVMDKGQV 807
IL G KT I TH V AI AD V V+ +G+V
Sbjct: 181 EILRRLAAEG-----KTIIFITHKLKEVMAI--ADRVTVLRRGKV 218
|
Length = 501 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 29/208 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLR 1293
A+ D++F + G VGI G G G+S ++ A+ L G+IL++G +++ R+ R
Sbjct: 273 AVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332
Query: 1294 GR-FAVVPQSPF----LFEGSLRDNL-------DPFHMNDDLKIWSVLEKCHVKE----- 1336
A VP+ + + SL +NL PF L + K +E
Sbjct: 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLD-RRAIRK-FARELIEEF 390
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+V A + + S S G +Q + LAR L + +L + T +D + +
Sbjct: 391 DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 1397 SSECKGMTVITIAHRISTVLNMDEILIL 1424
+ + IS L DEIL L
Sbjct: 447 LELRDAGKAVLL---ISEDL--DEILEL 469
|
Length = 501 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
VL ++ +G ++A++G G+GKS+LL + G + G++ G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 670 ---IAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+ V Q P + + + ++ FG P + + V +L G
Sbjct: 67 RQRVGLVFQDPDDQLFAADVDQDVAFG----PLNLGLSEAEVERRVREALTAVGASGLRE 122
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
LSGG++ R+A+A AV D+ +LD+ + +D +L+ + T +
Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA-ILRRLRAEGMTVV 181
Query: 785 LCTHNV 790
+ TH+V
Sbjct: 182 ISTHDV 187
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-06
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
+L+ VSL L G +VA++G G+GKS+LL ++ GE+ G +
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-06
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 43/156 (27%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQVPW 678
++++ +S LP G +V VIG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 336 LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQ--- 392
Query: 679 ILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG----- 724
RD + DP + S L DI + +G ++ AY+G
Sbjct: 393 -----SRDAL------DPNKTVWEEISGGL-------DI-IQLGKREVPSRAYVGRFNFK 433
Query: 725 ----EKGV-NLSGGQRARLALARAVYHGSDIYMLDD 755
+K V LSGG+R R+ LA+ + G ++ +LD+
Sbjct: 434 GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDE 469
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-06
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 15/150 (10%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677
E + LN +S +P+G +V +IG GSGKS+L N I G M G++ GS A +
Sbjct: 35 EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA--- 91
Query: 678 WILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-----LS 731
I SG + L G +N + + L + I ++ + A IG K + S
Sbjct: 92 -ISSGL--NGQLTGIENIELKGLMMGLTKEKIKEIIPEII--EFADIG-KFIYQPVKTYS 145
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVD 761
G ++RL A +V+ DI ++D+ LS D
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDEALSVGD 175
|
Length = 549 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-06
Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 39/244 (15%)
Query: 1216 QGLIEFQN--VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-- 1271
Q L+ +N V R + ++ ++D++ IE G + +VG +G+GKS ++ RL P
Sbjct: 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSP 62
Query: 1272 ---ICGGQILVDGLNIINTPVRDLRG----RFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1324
G I G ++++ + LRG + A++ Q P + +L+P H + +
Sbjct: 63 PVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMV-------SLNPLH-TLEKQ 114
Query: 1325 IWSVLEKCHVKEEVEAVGLETF--VKESGI------------SFSVGQRQLICLARALLK 1370
++ VL H EA E + GI S G+RQ + +A ALL
Sbjct: 115 LYEVLS-LHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173
Query: 1371 SSKVLCLDECTANVDAQT-ASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDH 1426
++L DE T +D A ILQ + E M ++ I H +S V + D + ++ +
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADRVAVMQN 232
Query: 1427 GHLV 1430
G V
Sbjct: 233 GRCV 236
|
Length = 529 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 40/173 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQ- 675
Q VL+ VSL L G ++ ++G G+GKS+L+ +LG + G I +G I YVPQ
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQK 75
Query: 676 ------VPWILS-------GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+P ++ GT +++IL LK V ++ M
Sbjct: 76 LYLDTTLPLTVNRFLRLRPGTKKEDIL-----------PALKR----VQAGHLIDAPMQ- 119
Query: 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD--AQVARWILSNAI 773
LSGG+ R+ LARA+ + + +LD+ VD QVA + L + +
Sbjct: 120 ------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
|
Length = 251 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 12/199 (6%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI---INTPVRDLRG 1294
+I+ T+ G I+G +G GK+++L + G+IL DG NI + + +R
Sbjct: 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84
Query: 1295 RFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS 1353
R +++ QS LF + ++ DN+ + + + ++ + L V ++EAVGL K
Sbjct: 85 RMSMLFQSGALFTDMNVFDNV-AYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSE 143
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS--SECKGMTVITIAHR 1411
S G + LARA+ ++ DE D T +L IS + G+T + ++H
Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203
Query: 1412 ISTVLNMDEILILDHGHLV 1430
+ VL+ I DH ++V
Sbjct: 204 VPEVLS-----IADHAYIV 217
|
Length = 269 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 41/187 (21%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ-VPWILSGTIRD--- 686
+ ++ ++G G GK++ + + G + G I +++Y PQ + GT+RD
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83
Query: 687 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALARAVY 745
+I P +E K ++ ++ ++ V LSGG+ R+A+A +
Sbjct: 84 SITKDFYTHPYFKTEIAKPLQIE---QIL---------DREVPELSGGELQRVAIAACLS 131
Query: 746 HGSDIYMLDDVLSAVDAQ--------VARWILSNAIMGPHMLQKTRILCTHNVQAIS-AA 796
+DIY+LD+ + +D + + R+ +N +KT + H++ I A
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN--------EKTAFVVEHDIIMIDYLA 183
Query: 797 DMVVVMD 803
D ++V +
Sbjct: 184 DRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 29/204 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH------------ASG 668
VV+N +S + +G ++G G+GKS++ +LG + G I A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77
Query: 669 SIAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+I VPQ + T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFG-------MSTREIEAVIPSLL--EFARLESK 128
Query: 727 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 129 ADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 187
Query: 783 RILCTHNV-QAISAADMVVVMDKG 805
+L TH + +A D + V++ G
Sbjct: 188 ILLTTHFMEEAERLCDRLCVLESG 211
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 30/154 (19%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L++VSL + +G +V +IG G+GK++LL ++ G+ T G I G
Sbjct: 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMR 79
Query: 669 -SIAYVPQVPWILSG-TIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
++A VP+ + S T+ +N+ G + + + E +K V + E
Sbjct: 80 EAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK----------WVYELFPRLHE 129
Query: 726 KGVN----LSGGQRARLALARAVYHGSDIYMLDD 755
+ + +SGG++ LA+ RA+ + +LD+
Sbjct: 130 RRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE 163
|
Length = 237 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-06
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 43/156 (27%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH--ASGSIAYVPQVP 677
++++ +S LP G +V +IG G+GKS+L I G+ G+I + +AYV Q
Sbjct: 337 RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS- 395
Query: 678 WILSGTIRDNILFGKNYDP-----QSYSETLKACTLDVDISLMVGG-DM---AYIG---- 724
RD + DP + S L DI + VG ++ AY+G
Sbjct: 396 -------RDAL------DPNKTVWEEISGGL-------DI-IKVGNREIPSRAYVGRFNF 434
Query: 725 -----EKGV-NLSGGQRARLALARAVYHGSDIYMLD 754
+K V LSGG+R RL LA+ + G ++ +LD
Sbjct: 435 KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD 470
|
Length = 556 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 39/200 (19%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 682
L S + G +V V+G GSG S+LL ++ T G++ G I Y
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN---RTEGNVSVEGDIHY---------N 70
Query: 683 TIRDNILFGKNYDPQS-YS--ETLKACTLDV----DISLMVGGDMAYIGEKGVNLSGGQR 735
I F + Y + Y E + TL V D +L G+ ++ +G+ SGG+R
Sbjct: 71 GI-PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGN-EFV--RGI--SGGER 124
Query: 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA 795
R+++A A+ + + D+ +D+ A IL + +L T ++
Sbjct: 125 KRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC------IRTMADVLKTTTFVSLYQ 178
Query: 796 A--------DMVVVMDKGQV 807
A D V+V+ +G+
Sbjct: 179 ASDEIYDLFDKVLVLYEGRQ 198
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 50/206 (24%), Positives = 83/206 (40%), Gaps = 53/206 (25%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAYVPQV 676
L +S+ +PK + A IG G GKS+LL L + G I G Y +V
Sbjct: 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99
Query: 677 ---------------PWILSGTIRDNILFG--------KNYDPQSYSETLKACTL--DVD 711
P +I +N+++G + ++ +L+ L +V
Sbjct: 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK 159
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARW 767
L E LSGGQ+ RL +ARA+ ++ +LD+ SA+D ++
Sbjct: 160 DRL---------HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL 210
Query: 768 I--LSNAIMGPHMLQKTRILCTHNVQ 791
I L + + T ++ THN+Q
Sbjct: 211 ITELKS--------KYTIVIVTHNMQ 228
|
Length = 272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 39/207 (18%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY E+Q L VS+ +PK S+ A+IG G GKS+ + I G++
Sbjct: 21 WY---GEKQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS 75
Query: 659 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
+ I+ ++ V Q P +I DN+ +G P+ + K V
Sbjct: 76 IEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG----PRIHGANKKDLDGVV 131
Query: 711 DISLMVGGDMAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
+ +L ++ ++LSGGQ+ RL +AR + I + D+ SA+D ++
Sbjct: 132 ENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP-IST 190
Query: 767 WILSNAIMGPHMLQK--TRILCTHNVQ 791
+ + IM L+K T ++ THN+Q
Sbjct: 191 ARIEDLIMN---LKKDYTIVIVTHNMQ 214
|
Length = 258 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 26/166 (15%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
E + + + +S L G + V G GSGK++LL + G G + +G
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 669 -----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY 722
+ Y+ P I + ++ +N+ F + E ++ V +
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRF---WHADHSDEQVEEALARVG--------LNG 117
Query: 723 IGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ-VAR 766
++ V LS GQ+ R+ALAR + G +++LD+ +A+D VAR
Sbjct: 118 FEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 47/208 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASGS- 669
L VS+ +P+ S+ A+IG G GKS+ L I G + L I+ G
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 670 -------IAYVPQVPWILSGTIRDNI-----------------LFGKNYDPQSYSETLKA 705
+ V Q P +IR+NI L G++ D + E ++
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRD-DKDAEDELVER 179
Query: 706 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVA 765
+ V + + + LSGGQ+ RL +AR + ++ ++D+ SA+D +A
Sbjct: 180 SLRQAALWDEVNDRL---DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP-IA 235
Query: 766 RWILSNAIMGPHMLQK--TRILCTHNVQ 791
+ + I L + T ++ THN+Q
Sbjct: 236 TSKIEDLI---EELAEEYTVVVVTHNMQ 260
|
Length = 305 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 40/206 (19%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDL 1292
L D + ++ G V ++GR G+G S++L AL T G I +G+
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY-------- 74
Query: 1293 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGL---ETFVKE 1349
FA ++ +D+ ++ V+E ++ FV+
Sbjct: 75 -KEFAEKYPGEIIYVSE-----------EDVHFPTLT----VRETLDFALRCKGNEFVR- 117
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTV 1405
GIS G+R+ + +A AL+ + VLC D T +D+ TA ++ ++ K T
Sbjct: 118 -GIS--GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT-MADVLKTTTF 173
Query: 1406 ITIAHRISTVLNM-DEILILDHGHLV 1430
+++ + ++ D++L+L G +
Sbjct: 174 VSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 46/200 (23%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIA 671
+N L + + +P LV V G GSGKS+L+N L +ASG
Sbjct: 7 NVHN-------LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----------YASGKAR 49
Query: 672 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVD-ISLMVGGDMAY--IGEKGV 728
+ +S + +D + ++ + Y +G+K
Sbjct: 50 LIS--------------------FLPKFSRNK---LIFIDQLQFLIDVGLGYLTLGQKLS 86
Query: 729 NLSGGQRARLALARAVYHGSD--IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGG+ R+ LA ++ +++LD+ + + Q +L I G L T IL
Sbjct: 87 TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL-EVIKGLIDLGNTVILI 145
Query: 787 THNVQAISAADMVVVMDKGQ 806
HN+ +S+AD ++ G
Sbjct: 146 EHNLDVLSSADWIIDFGPGS 165
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-06
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ-----KTRI 784
LSGGQ+ R+A+ARA+ + + D+ SA+D ++ +L M T +
Sbjct: 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDV------MKDLAEEGMTMV 189
Query: 785 LCTHNVQ-AISAADMVVVMDKGQV 807
+ TH + A AD V+ MD G++
Sbjct: 190 VVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657
+ + +++ + N ++ +L +S + G A++G G+GK++LL+ + GE
Sbjct: 28 NEPLIELKNVSVR--RNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81
Query: 658 MLTHGSI---------------------HASGSIAYVPQVPWILSGTIRDNILFGKNYDP 696
+ G + S + +V T+RD +L G +
Sbjct: 82 PPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE----TVRDVVLSGF-FAS 136
Query: 697 QS-YSETLKACTLDVDISLM-VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754
Y E L A L L+ + G +LS G++ R+ +ARA+ ++ +LD
Sbjct: 137 IGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196
Query: 755 DVLSAVDAQVARWILSNAI-------MGPHMLQKTRILCTHNVQAISA 795
+ +D +AR L N + P +L TH+ + I
Sbjct: 197 EPAQGLDL-IAREQLLNRLEELAASPGAPALL-----FVTHHAEEIPP 238
|
Length = 257 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-06
Identities = 64/218 (29%), Positives = 94/218 (43%), Gaps = 54/218 (24%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IE +N++ + L + D++F + G VG++G GAGKS+ LFR+ I G +
Sbjct: 323 IEAENLSKGFGDKL--LIDDLSFKLPPGGIVGVIGPNGAGKST----LFRM--ITGQEQP 374
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM--------NDDLKIWSVLE 1330
G I V + A V QS RD LDP D +++
Sbjct: 375 DSGTIKIGETV-----KLAYVDQS--------RDALDPNKTVWEEISGGLDIIQLGKR-- 419
Query: 1331 KCHVKEEVEA---VGLETFV-----KESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
EV + VG F K+ G S G+R + LA+ L VL LDE T
Sbjct: 420 ------EVPSRAYVGRFNFKGSDQQKKVG-QLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 1383 NVDAQTASILQNAISSECKGMTVITIAH------RIST 1414
++D +T L+ A+ E G V+ I+H RI+T
Sbjct: 473 DLDVETLRALEEAL-LEFAGCAVV-ISHDRWFLDRIAT 508
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL---FRLTPI 1272
Q L+ + MR+ L A++++N + V ++G GAGK+++ N L ++ T
Sbjct: 3 QPLLSVSGLMMRFGGLL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-- 58
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVP--QSPFLF-EGSLRDNL---DPFHMNDDLKIW 1326
GG IL+ G +I P + R VV Q LF E ++ +NL + L +
Sbjct: 59 -GGTILLRGQHIEGLPGHQI-ARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGL--F 114
Query: 1327 SVLEK--CHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374
S L K + E EA VGL + + GQ++ + +AR ++ ++
Sbjct: 115 SGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174
Query: 1375 LCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHG 1427
L LDE A ++ + L I+ +TV+ I H + V+ + D I +++ G
Sbjct: 175 LMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 53/212 (25%), Positives = 88/212 (41%), Gaps = 42/212 (19%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMM 658
WY E+Q LN ++L + + + A+IG G GKS+ L I GE++
Sbjct: 13 WY---GEKQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67
Query: 659 LTHGSIHASG--------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSET 702
L +I+ + V Q P +I DN+ +G K +
Sbjct: 68 LDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWA 127
Query: 703 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
LK L ++ + + + LSGGQ+ RL +AR + D+ ++D+ SA+D
Sbjct: 128 LKKAALWDEVK-------DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDP 180
Query: 763 QVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794
I +M + T ++ THN+Q S
Sbjct: 181 ISTLKI--EDLMVELKKEYTIVIVTHNMQQAS 210
|
Length = 251 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 53/277 (19%), Positives = 112/277 (40%), Gaps = 49/277 (17%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------IAY 672
++ +S +P G + ++G G+GK++ ILG + T G I +G I Y
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 673 VPQVPWILSG-TIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+P+ + T+ D + + K + L+A ++I +K
Sbjct: 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-------GKKTKKIK 129
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LS G + ++ AV H ++ +LD+ S +D V +L +AI T I +H
Sbjct: 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSH 188
Query: 789 NVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 847
++ + D ++++ KGQ T L+ +++R S
Sbjct: 189 RMEHVEELCDRLLMLKKGQ-------------------------TVLYGTVEDIR--RSF 221
Query: 848 ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTV 884
K+++++ + + I+++ + K+G + +
Sbjct: 222 GKKRLVIESDLSLEELANIPGILKITETKDGSWRIQI 258
|
Length = 300 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
+ VL ++L + G +VAV+G+ G+GK++LL ILG G Y P
Sbjct: 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-------GRGEEKYRPDSGK 447
Query: 679 ILSGTIRDNILFGKNYDPQSYSET----LKACTLDVDISL----MVGGDMAYIGEKGVN- 729
+ + L Y+P+ T L++ T D++ ++ G A + + +
Sbjct: 448 VEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSE 507
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LS GQ+ R LA+ + ++ ++D+ + +D A + T I+ TH
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 790 VQAISA--ADMVVVMDKGQV 807
+ +A D ++++ G+V
Sbjct: 568 PEVGNALRPDTLILVGYGKV 587
|
Length = 593 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-06
Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 25/213 (11%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNAL-FRLTP--ICGGQILVDGLNIINTPVRDL 1292
L +++ + G + ++G +GAGK++++NAL FR G +L++G+ I +++
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEM 97
Query: 1293 RGRFAVVPQSPFLFEGSL--RDNL---DPFHMNDDLKIWSVLEKCH-VKEEVEAVGL--- 1343
R A V Q LF +L R++L M + + EK V E ++A+GL
Sbjct: 98 RAISAYVQQDD-LFIPTLTVREHLMFQAHLRMPRRV---TKKEKRERVDEVLQALGLRKC 153
Query: 1344 -ETFVKESGI--SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC 1400
T + G S G+R+ + A LL +L DE T+ +D+ A + +
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 1401 -KGMTVITIAHRISTVL--NMDEILILDHGHLV 1430
KG T+I H+ S+ L D+I+++ G +
Sbjct: 214 QKGKTIICTIHQPSSELFELFDKIILMAEGRVA 246
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 55/232 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-------LGEMMLTHGSIHASGSIA 671
VL+ + L + +G +V +IG GSGKS+LL I G++++ + +
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV--DGLKVNDPKV 70
Query: 672 YV-----------------PQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
P + T +N++FG P K L
Sbjct: 71 DERLIRQEAGMVFQQFYLFPHL------TALENVMFG----PLRVRGASKEEAEKQAREL 120
Query: 715 M--VG-GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ----VA 765
+ VG + A Y E LSGGQ+ R+A+ARA+ + + D+ SA+D + V
Sbjct: 121 LAKVGLAERAHHYPSE----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVL 176
Query: 766 RWILSNAIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ + A G M ++ TH + A A ++ +DKG++ G L
Sbjct: 177 KVMQDLAEEGMTM-----VIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223
|
Length = 240 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIHASGSIAY----- 672
L +++L + + + A+IG G GKS+ L ++ L + G + G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 673 ----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 720
V Q P +I DN+ +G P+++ K LD V+ SL
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYG----PRTHGIKDKK-KLDEIVEKSL----KG 129
Query: 721 AYIGEK--------GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 768
A + ++ + LSGGQ+ RL +ARA+ ++ ++D+ SA+D ++ I
Sbjct: 130 AALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 769 LSNAIMGPHMLQK--TRILCTHNVQ 791
L+K T ++ THN+Q
Sbjct: 190 QE--------LKKDYTIVIVTHNMQ 206
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 58/236 (24%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 1218 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
+I+ +NV+ RY + A+ +++ ++ G GIVG +GAGK+++ + +
Sbjct: 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS 338
Query: 1275 GQILV---DGLNIINTPVRDLRGR----FAVVPQSPFLF-EGSLRDNL---------DPF 1317
G++ V D + P D RGR ++ Q L+ ++ DNL D
Sbjct: 339 GEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL 398
Query: 1318 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+K L+ EE L+ + E S G+R + LA+ L+K +++ L
Sbjct: 399 AR---MKAVITLKMVGFDEEKAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVIL 451
Query: 1378 DECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
DE T +D T + ++I + E T I ++H + VL++ D ++ G +V
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIV 507
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSIL---------GEMMLTHGSIHASGS- 669
L ++L + K + A IG G GKS+LL N + GE++L +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 670 -------IAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLD--VDISLMVGGD 719
+ V Q P +I DNI FG + ++ S +E +D V+ +L
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAE------MDERVEWALTKAAL 142
Query: 720 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ +K G +LSGGQ+ RL +AR + ++ +LD+ SA+D
Sbjct: 143 WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSIL------GEMMLTHGSIHASG- 668
VL +++ P+ + A+IG G GKS+LL N I+ G ++L + +I++
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 669 -------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 719
+ V Q P +I DN+ FG P+ T ++ LD V+ SL
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFG----PRMLGTTAQS-RLDEVVEKSLRQAAL 133
Query: 720 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
+ + G+ LSGGQ+ RL +AR + ++ ++D+ SA+D I +M
Sbjct: 134 WDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRI--EELMQ 191
Query: 776 PHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
T + THN+ QA A+D + G + G + ++
Sbjct: 192 ELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-05
Identities = 57/236 (24%), Positives = 106/236 (44%), Gaps = 26/236 (11%)
Query: 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC 1273
P + ++E +N+T +PS+ D++F + G +GI G GA ++ I+ LF +
Sbjct: 246 PGEVILEVRNLTSLRQPSI----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 1274 GGQILVDGLNIIN-TPVRDLRGRFAVVPQ---SPFLFE------GSLRDNLD----PFHM 1319
G I + G I N + FA+V + S ++ SL N+ +
Sbjct: 302 AGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL 361
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI-SFSVGQRQLICLARALLKSSKVLCLD 1378
D+ ++ K + ++++ ++T + I S S G +Q + + R LL ++L LD
Sbjct: 362 LDNSRM-----KSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 1379 ECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
E T +D I Q K +I I+ + +L + D IL++ +G + I
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472
|
Length = 491 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 2e-05
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 53/243 (21%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI-----LGEMMLTHGSIH 665
WY N + VL+ ++L + + + A IG G GKS+ L ++ L E G I+
Sbjct: 89 WYMNRTKH---VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 666 ASGS---------------IAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSET 702
G+ I V Q P +I DN+ +G + + ++
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 703 LKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD- 761
LK+ L ++ + + G LSGGQ+ RL +ARA+ ++ ++D+ SA+D
Sbjct: 206 LKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 762 ---AQVARWILSNAIMGPHMLQK--TRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 815
A++ IL L+K + I+ TH++ QA +D V +G ++ G +
Sbjct: 259 IATAKIEELILE--------LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKT 310
Query: 816 LAV 818
+ +
Sbjct: 311 IFI 313
|
Length = 329 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYV 673
+S +PKG +V +G G+GKS+ L + G ++ T G + +G SI V
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102
Query: 674 ----PQVPWILSGTIRDNILFGK---NYDPQSYSETLKACT--LDVDISLMVGGDMAYIG 724
Q+ W L D++ K ++E L T LD++ L
Sbjct: 103 MGQKLQLWWDLP--ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW-------- 152
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTR 783
LS GQR R LA A+ H + LD+ +D A+ + + + Q T
Sbjct: 153 -PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV-NAQANIREFLKEYNEERQATV 210
Query: 784 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817
+L TH I+ D V+++D+GQ+ + G+ A L
Sbjct: 211 LLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQ 245
|
Length = 325 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------NSILGEMMLTHGSIHASGSIAY 672
+ L + L + + A+IG G GKS+ L N ++ + +T G++ G Y
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT-GNVSLRGQNIY 75
Query: 673 VP---------------QVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLD 709
P Q P +I +N+++G K ++ +LK +
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 710 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWIL 769
++ ++ E ++LSGGQ+ R+ +AR + D+ +LD+ SA+D I
Sbjct: 136 DEVK-------DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDP-----IS 183
Query: 770 SNAIMGPHML-----QKTRILCTHNVQAIS 794
S I +ML Q T IL TH++ S
Sbjct: 184 STQI--ENMLLELRDQYTIILVTHSMHQAS 211
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 36/200 (18%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHA 666
+N L ++L +P + A+IG G GKS+LL I G++ + I+
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74
Query: 667 SGSIA-------YVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVD 711
+ +A V Q P +I +N+ +G K + +L+ L +
Sbjct: 75 NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE 134
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+ + LSGGQ+ RL +AR + D+ ++D+ SA+D I
Sbjct: 135 VK-------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKI--E 185
Query: 772 AIMGPHMLQKTRILCTHNVQ 791
+M T ++ TH++Q
Sbjct: 186 ELMEELKKNYTIVIVTHSMQ 205
|
Length = 249 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 25/203 (12%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------------HASG 668
+V++ +S + +G ++G G+GK++ L +LG GSI HA
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQ 80
Query: 669 SIAYVPQV----PWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+ VPQ P T+R+N+L Y S + ++ + + A +G
Sbjct: 81 RVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVG 137
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
E LSGG + RL LARA+ + D+ +LD+ + +D Q AR ++ + KT +
Sbjct: 138 E----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLMWERLRSLLARGKTIL 192
Query: 785 LCTHNV-QAISAADMVVVMDKGQ 806
L TH + +A D + V+++G+
Sbjct: 193 LTTHFMEEAERLCDRLCVIEEGR 215
|
Length = 306 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDLR 1293
AL ++N + + ++G GAGKS++L LF + G IL G I + L
Sbjct: 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALE 72
Query: 1294 GRFAVVPQSPFLF-EGSLRDNL------------DPFHMNDDLKIWSVLEKCHVKEEVEA 1340
++V Q L + S+ DN+ D M D K +
Sbjct: 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----------TKAIFDE 121
Query: 1341 VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS-E 1399
+ ++ + + SV Q Q+I +A+A ++K++ +DE T+++ + + L I +
Sbjct: 122 LDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 1400 CKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+G ++ I+H++ + + DEI IL G +
Sbjct: 182 ERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 59/204 (28%), Positives = 98/204 (48%), Gaps = 16/204 (7%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPIC-GGQILVDGLNIINTPVRDLR 1293
L+ + G + ++G +G+GKS++LNAL R+ G IL + P + +
Sbjct: 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN----RKPTKQIL 139
Query: 1294 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEA-VGL----ETFV 1347
R V Q L+ ++R+ L + K + EK V E V + +GL T +
Sbjct: 140 KRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTII 199
Query: 1348 KESGI-SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTV 1405
S I S G+R+ + +A +L + +L LDE T+ +DA A ++ S KG T+
Sbjct: 200 GNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTI 259
Query: 1406 ITIAHRIST-VLNM-DEILILDHG 1427
+T H+ S+ V M D +L+L G
Sbjct: 260 VTSMHQPSSRVYQMFDSVLVLSEG 283
|
Length = 659 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-05
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 45/216 (20%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMML--------THGSIH 665
L ++ KG +VA++G G+GKS+L N IL GE+++ +
Sbjct: 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75
Query: 666 ASGSIAYVPQVP--WILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMV 716
++ V Q P + + T+ +++ FG K + E LKA V
Sbjct: 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA----------V 125
Query: 717 GGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
G M K + LSGGQ+ R+A+A + +I +LD+ S +D A I+
Sbjct: 126 G--MEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL--- 180
Query: 776 PHMLQK---TRILCTHNVQAISA-ADMVVVMDKGQV 807
+ L K T I+ TH+V + AD V VM G++
Sbjct: 181 -YDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215
|
Length = 275 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 50/204 (24%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT------HGSIHASGSIAYVPQV 676
L V L +P+ ++ A IG G GKS+ L L M T G I G Y P++
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRC-LNRMNDTIDGCRVTGKITLDGEDIYDPRL 93
Query: 677 ---------------PWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGG- 718
P +I +N+ +G P+ + LD V+ SL G
Sbjct: 94 DVVELRARVGMVFQKPNPFPKSIYENVAYG----PRIHGLARSKAELDEIVETSLRKAGL 149
Query: 719 -----DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWIL 769
D + E G LSGGQ+ RL +ARA+ ++ ++D+ SA+D A+V I
Sbjct: 150 WEEVKDR--LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELI- 206
Query: 770 SNAIMGPHMLQK--TRILCTHNVQ 791
L++ T ++ TH++Q
Sbjct: 207 -------DELRQNYTIVIVTHSMQ 223
|
Length = 267 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 26/183 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI------HASGSIAYVP 674
++ +S L G + V G G GK++LL + G + G + A
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 675 QVPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ ++ L G + +N+ F ++ ++ +L G +
Sbjct: 74 NILYLGHLPGLKPELSALENLHF--------WAAIHGGAQRTIEDALAAVGLTGFEDLPA 125
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK--TRIL 785
LS GQ+ RLALAR + +++LD+ +A+D L ++ H L + +L
Sbjct: 126 AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVA--LLAGLLRAH-LARGGIVLL 182
Query: 786 CTH 788
TH
Sbjct: 183 TTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 38/227 (16%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL-------NIIN 1286
AA+ +++F+++ G + IVG +G+GKS AL RL GG + D + +I
Sbjct: 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89
Query: 1287 ------TPVRDLRGR-FAVVPQSPFLFEGSLRDNLDP-FHMNDDL-----------KIWS 1327
+R +RG A++ Q P +L+P F + + + + +
Sbjct: 90 LSEQSAAQMRHVRGADMAMIFQEPM-------TSLNPVFTVGEQIAESIRLHQGASREEA 142
Query: 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
++E + ++V +T + S G RQ + +A AL VL DE T +D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVT 202
Query: 1388 -TASILQ--NAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
A ILQ + E M VI I H + V + D +L++ G V
Sbjct: 203 IQAQILQLIKVLQKEMS-MGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
Length = 623 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 30/198 (15%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSIHA 666
+N + VS+ P+ S+ A+IG G GKS++L SI G+++L I+
Sbjct: 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 667 SGS--------IAYVPQVPWILSG-TIRDNILFGKNYD---PQSYS-ETLKACTLDVDIS 713
G + V Q P +I DN++ G + +S + E +++ V +
Sbjct: 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW 135
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
V + + LSGGQ+ RL +AR + ++ ++D+ SA+D I +
Sbjct: 136 DEVKDRLK---SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI--EEL 190
Query: 774 MGPHMLQKTRILCTHNVQ 791
+ + T I+ THN+Q
Sbjct: 191 IEELKEKYTIIIVTHNMQ 208
|
Length = 252 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 22/162 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------IAYVPQ 675
+L Q+S LP G L+ + G G+GK++LL I G + G I Y Q
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 676 VPWI--LSG-----TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+ ++ SG T+R+N L YD + L SL I
Sbjct: 76 LCFVGHRSGINPYLTLRENCL----YDIHFSPGAVGITELCRLFSL-----EHLIDYPCG 126
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
LS GQ+ ++AL R + +++LD+ L A+D I++
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
|
Length = 200 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 55/223 (24%), Positives = 86/223 (38%), Gaps = 54/223 (24%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 7 LEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 1279 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKI 1325
V+G I +D LR R +V Q F NL HM
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-F--------NLWS-HM------ 108
Query: 1326 WSVLE-------------KCHVKEEVEA----VGLETFVKESGISFSVGQRQLICLARAL 1368
+VLE K E E VG+ S GQ+Q + +ARAL
Sbjct: 109 -TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARAL 167
Query: 1369 LKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVIT 1407
+V+ DE T+ +D + ++Q ++ E + M V+T
Sbjct: 168 AMEPEVMLFDEPTSALDPELVGEVLKVMQ-DLAEEGRTMVVVT 209
|
Length = 256 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLN----------SILGEMMLTHGSIHA----S 667
+L V+ + KG +V ++G G GKS+LL+ S GE+ L +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 668 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIG 724
I + Q + ++ N+LF + TLK A + +L G
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLF-------ALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIMGPHMLQ 780
+ LSGGQRAR+AL RA+ +LD+ S +D Q +W+ S
Sbjct: 130 QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEV----RAAG 185
Query: 781 KTRILCTHNVQAISAADMVVVM 802
+ TH++Q + A V+ M
Sbjct: 186 IPTVQVTHDLQDVPAGSRVIEM 207
|
Length = 213 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 48/200 (24%), Positives = 77/200 (38%), Gaps = 47/200 (23%)
Query: 1237 HDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI------------ 1284
++ I G I+G G GKS++L L RL G + +DG +I
Sbjct: 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83
Query: 1285 ------INTP----VRDL--RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC 1332
TP V++L RGR+ P P W ++
Sbjct: 84 GLLAQNATTPGDITVQELVARGRY---PHQPLFTR------------------WRKEDEE 122
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
V + ++A G+ +S + S GQRQ +A L + + ++ LDE T +D L
Sbjct: 123 AVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDL 182
Query: 1393 QNAIS--SECKGMTVITIAH 1410
+S + KG T+ + H
Sbjct: 183 LELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 38/226 (16%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLN------------SILGEMMLTHGSIHASG-- 668
L+ +SL + L A+IG G GKS+ L I GE+ +I+ S
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDISL 714
+ V Q P ++ DN+ +G K Q E+LK + +
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK- 138
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
+ SGGQ+ R+ +ARA+ + +LD+ SA+D + I +
Sbjct: 139 ------DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME 192
Query: 775 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 819
H Q T I+ THN+ QA +D + G + G + ++ ++
Sbjct: 193 LKH--QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIA 236
|
Length = 251 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-05
Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 29/204 (14%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
V+N +S + G ++G G+GKS++ ILG G I G
Sbjct: 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARA 114
Query: 670 -IAYVPQVPWI-LSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I VPQ + L T+R+N+L FG+ + + ++ I ++ + A + K
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYF-------GMSTREIEAVIPSLL--EFARLESK 165
Query: 727 G----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+LSGG + RL LARA+ + + +LD+ + +D AR ++ + KT
Sbjct: 166 ADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLIWERLRSLLARGKT 224
Query: 783 RILCTHNV-QAISAADMVVVMDKG 805
+L TH + +A D + V++ G
Sbjct: 225 ILLTTHFMEEAERLCDRLCVLEAG 248
|
Length = 340 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-05
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 14/211 (6%)
Query: 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRD 1291
P I+F++ G VG+ G GAG+S ++ L+ T GQ+ +DG I I +P
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDA 325
Query: 1292 LRGRFAVVPQSPFLFEG-----SLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVG 1342
+R + P+ EG S+ DN++ H+ I + E + + ++
Sbjct: 326 IRAGIMLCPEDR-KAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLN 384
Query: 1343 LETFVKESGISF-SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
++T +E I S G +Q L R L + KV+ LDE T +D + N I
Sbjct: 385 IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 1402 -GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
G+ V+ ++ + VL + D I+++ G +
Sbjct: 445 QGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 38/195 (19%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG----- 668
V+L + S+ A IG G GKS++L + + GE++L ++ G
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM---- 720
+I V Q P + +IRDN++ G + + L V+ SL G ++
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL---VEKSL-RGANLWNEV 138
Query: 721 -AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI---MGP 776
+ + G LSGGQ+ RL +ARA+ D+ ++D+ SA+D I + AI +
Sbjct: 139 KDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP-----ISTLAIEDLINE 193
Query: 777 HMLQKTRILCTHNVQ 791
T ++ THN+Q
Sbjct: 194 LKQDYTIVIVTHNMQ 208
|
Length = 258 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 52/228 (22%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGS------- 663
L +++ + + + A+IG G GKS+ L N GE++L +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 664 ---IHASGSIAYVPQVPWILSGTIRDNILFG--------KNYDPQSYSETLKACTLDVDI 712
I I+ V Q P +I +N+ +G ++ + L+ L ++
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEV 151
Query: 713 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWI 768
+G D+A+ NLSGGQ+ RL +ARA+ +I + D+ SA+D A + I
Sbjct: 152 KDRLG-DLAF------NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204
Query: 769 --LSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSS 813
L N + T ++ THN+ QA +D M G++ G++
Sbjct: 205 SDLKNKV--------TILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
|
Length = 265 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-05
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--GSIAYVPQ 675
+ + ++L L G +A+IGE G GK++LL +++GE+ G++ S +I Y Q
Sbjct: 330 DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQ 389
|
Length = 530 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 8e-05
Identities = 60/224 (26%), Positives = 96/224 (42%), Gaps = 52/224 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSS-------LLNSILGEMMLTHGSIHASGSIA 671
NVV+ +S L G + ++GE GSGKS+ L+NS GE+ +H
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-QGEIWFDGQPLHNLNRRQ 356
Query: 672 YVPQVPWILSGTIRDNILFGKNYDPQS------------------YSETLKACTLDVD-I 712
+P I ++F DP S + TL A + I
Sbjct: 357 LLPVRHRI-------QVVF---QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI 406
Query: 713 SLM--VGGDMA----YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766
++M VG D Y E SGGQR R+A+ARA+ + +LD+ S++D V
Sbjct: 407 AVMEEVGLDPETRHRYPAE----FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462
Query: 767 WILS--NAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807
IL+ ++ H L + +H++ + A V+V+ +G+V
Sbjct: 463 QILALLKSLQQKHQL--AYLFISHDLHVVRALCHQVIVLRQGEV 504
|
Length = 529 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 8e-05
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASG---------SIA 671
LN +S + G+L A++GE G+GK++LL+ + G + G I +G S
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82
Query: 672 YVPQVPWILSG--TIRDNILF 690
YV Q + S T+R+ + F
Sbjct: 83 YVEQQD-VHSPNLTVREALRF 102
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 27/180 (15%)
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF-A 1297
++F ++ G + + G GAGK+++L L L + GQI +DG T R R RF A
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG----KTATRGDRSRFMA 85
Query: 1298 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE----EVEAVGL----ETFVKE 1349
+ P L+ +L ++L L K+ + VGL +T V++
Sbjct: 86 YLGHLP-----GLKADLSTL---ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQ 137
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVIT 1407
S GQ++ + LAR L + + LDE AN+D + +++ IS+ + G ++T
Sbjct: 138 ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVT 193
|
Length = 214 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 9e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
VS L G ++ ++GE GSGK++LLN++ + G +H
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS--NAIMGPHMLQKTRILCTH 788
SGGQR R+A+ARA+ ++ +LD+ SA+D V +L + H L + + +H
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGL--SYLFISH 485
Query: 789 NVQAISA-ADMVVVMDKGQVKWIGSSADL 816
++ + A V+VM G++ G + +
Sbjct: 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
|
Length = 534 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 30/223 (13%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY--------- 672
+L +++ +P S+ ++G GSGKS+LL + + + I G + Y
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 673 ----------VPQVPWILSG-TIRDNILFG-KNY---DPQSYSETLKACTLDVDISLMVG 717
V Q P +I DNI + K++ + + + ++ C V + V
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV- 143
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ LSGGQ+ RL +ARA+ + ++D+ S +D ++ I ++
Sbjct: 144 --YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI--EKLITEL 199
Query: 778 MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819
+ ++ +HN Q ++ AD V + G++ GSS ++ S
Sbjct: 200 KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 54/209 (25%), Positives = 92/209 (44%), Gaps = 42/209 (20%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMM 658
WY Q+ L ++L +P+ + A+IG G GKS+ + + + GEM
Sbjct: 21 WY-----GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMN 75
Query: 659 LTHGSIHAS--------GSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD- 709
+I +I V Q +I DN+ +G P+ + K +
Sbjct: 76 YNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYG----PRIHGTKNKKKLQEI 131
Query: 710 VDISLMVGGDMAYIGE-------KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA 762
V+ SL D+A E + ++LSGGQ+ RL +ARA+ D+ ++D+ SA+D
Sbjct: 132 VEKSLK---DVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDP 188
Query: 763 QVARWILSNAIMGPHMLQKTRILCTHNVQ 791
R I ++ + T ++ THN+Q
Sbjct: 189 VSTRKI--EELILKLKEKYTIVIVTHNMQ 215
|
Length = 259 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-04
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
EEQ VL +SL + G +VA++G GSGKS+L+N ILG
Sbjct: 18 EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG 55
|
Length = 648 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 57/221 (25%)
Query: 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASGS------------ 669
V+L LP + A+ G G+GK+SL+N+I G LT G I +G
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISG---LTRPQKGRIVLNGRVLFDAEKGICLP 72
Query: 670 -----IAYVPQ----VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGD 719
I YV Q P +R N+ +G + I ++G +
Sbjct: 73 PEKRRIGYVFQDARLFPHY---KVRGNLRYGMAKSMVAQFD----------KIVALLGIE 119
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI------LSNAI 773
+ +LSGG++ R+A+ RA+ ++ ++D+ L+++D R + L+ I
Sbjct: 120 -PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 774 MGPHMLQKTRIL-CTHNVQAI-SAADMVVVMDKGQVKWIGS 812
IL +H++ I AD VVV+++G+VK G
Sbjct: 179 -------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 1251 IVGRTGAGKSSILNALFRLT-PICG-----GQILVDGLNIINTPVRDLRGRFAVVPQSPF 1304
I GR+GAGK+S++NA+ LT P G G++L D I P + R V Q
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPE--KRRIGYVFQDAR 86
Query: 1305 LF-----EGSLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1356
LF G+LR + M D + V +G+E + S S
Sbjct: 87 LFPHYKVRGNLRYGMAKS-MVAQFDKI--------------VALLGIEPLLDRYPGSLSG 131
Query: 1357 GQRQLICLARALLKSSKVLCLDECTANVD 1385
G++Q + + RALL + ++L +DE A++D
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK------- 781
LSGGQ+ R+A+ARA+ + + D+ SA+D R IL +L+
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE-------LLKDINRELGL 192
Query: 782 TRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 815
T +L TH + + D V V+D G++ G+ ++
Sbjct: 193 TIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227
|
Length = 343 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 25/165 (15%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L+DI+ I G V ++G +G+GK+++L + L G I G ++ RD +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMN--DDLKI-WSVLE----------KCHVKEEVEAVG 1342
F V Q LF HM D++ +VL K V + +E V
Sbjct: 78 F--VFQHYALFR----------HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQ 125
Query: 1343 LETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
L S GQ+Q + LARAL ++L LDE +DAQ
Sbjct: 126 LAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 2e-04
Identities = 45/200 (22%), Positives = 78/200 (39%), Gaps = 24/200 (12%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMMLTHGSIHASGSIAYVPQ 675
L + L + +G +V ++GE G GKS+L GE++L ++ A Y
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD- 416
Query: 676 VPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
+ S D LF G++ + + L+ + + + GG
Sbjct: 417 ---LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGG-----FSTT 468
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
LS GQ+ RLAL A I + D+ + D R+ + KT I+ +
Sbjct: 469 TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIIS 528
Query: 788 HNVQAISAADMVVVMDKGQV 807
H+ Q AD ++ + G +
Sbjct: 529 HDDQYFELADQIIKLAAGCI 548
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAY 672
E + +S + G +A++GE GSGKS SILG +L + H SGSI +
Sbjct: 19 EGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILG--LLPSPAAAHPSGSILF 74
|
Length = 534 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 34/221 (15%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNS------------ILGEMMLTHGSIHASG-- 668
LN +++ + K S+ A+IG G GKS+ L + I G ++ +I+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGDM 720
I V Q P +I DNI +G P+ + K LD V+ SL
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYG----PKIHGTKDKK-KLDEIVEQSLKKSALW 137
Query: 721 AYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ +K ++LSGGQ+ RL +AR + ++ ++D+ SA+D ++ + I+
Sbjct: 138 NEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP-ISTGKIEELIINL 196
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
T I+ THN+ QA +D G ++ S+ +L
Sbjct: 197 KE-SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236
|
Length = 254 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 683 TIRDNILFGKNYDPQSYSETLK-ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
TI +I+FG P S + + A +VG D +Y+ LSGGQ+ R+ALA
Sbjct: 122 TIEKDIIFG----PVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALA 177
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVV 800
+ D + D+ + +D Q + IL + KT IL TH++ + +
Sbjct: 178 GILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236
Query: 801 VMDKGQV 807
G++
Sbjct: 237 FFKDGKI 243
|
Length = 305 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 35/226 (15%)
Query: 609 CSWYCNNEEEQNV---VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
C C +E +V VL+ VS + +G ++A++G GSGKS+LL+ +LG +
Sbjct: 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGL-----DTP 61
Query: 666 ASGSIAYVPQVPWILSGTIR---DNILFGKNYDPQSYSETLKACTLDVDISLMVGGD--- 719
SG + + Q LS + N G Y A +V + L++G
Sbjct: 62 TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE-NVAMPLLIGKKKPA 120
Query: 720 ---------MAYIG-EKGVN-----LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
+A +G E N LSGG+R R+A+ARA+ + + + D+ +DA+
Sbjct: 121 EINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
Query: 765 ARWILSNAIMGP-HMLQKTRIL-CTHNVQAISAADMVVVMDKGQVK 808
A I ++G + LQ T L TH++Q + M G++
Sbjct: 181 ADSIF--QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLT 224
|
Length = 233 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
VLN VSL L G VA++G G GKS+L ++G + G++ G
Sbjct: 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86
Query: 669 -----------SIAYV-PQ--VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISL 714
SI+ V P+ V I+ +R + K SE L+A LD +
Sbjct: 87 FRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLD 146
Query: 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIM 774
LSGGQ R+ LARA+ + +LD+ +S +D + ++
Sbjct: 147 KRPP----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIR---- 192
Query: 775 GPHMLQKTR-------ILCTHNVQAISA-ADMVVVMDKGQV 807
+L+K + + TH+++ + V+VMD GQ+
Sbjct: 193 ---LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230
|
Length = 268 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1274
Q L+ + +T Y P D++F + G +GIVG +G+GK+++LNAL RL P G
Sbjct: 4 QPLLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG 61
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-04
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279
E +NVT R + + DI+F++ G +G G G+G++ ++N LF + GG+I +
Sbjct: 267 EVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
Query: 1280 DGLNI-INTPVRDLRGRFAVVPQS-------------------PFLFEGSLRDNLDPFHM 1319
+G +I +P+ ++ A + +S L +G + + FH
Sbjct: 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHE 382
Query: 1320 NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLD 1378
D+ + + + E + L+ I+ S G +Q + +++ L +V+ D
Sbjct: 383 VDEQRT--------AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD 434
Query: 1379 ECTANVDAQTAS 1390
E T +D +
Sbjct: 435 EPTRGIDVGAKA 446
|
Length = 510 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 54/225 (24%), Positives = 96/225 (42%), Gaps = 49/225 (21%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG--GQILVDG--LNIINTPVRD- 1291
D++F + G +GIVG +G+GKS++L L RL P G I+ G L + +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80
Query: 1292 ---LRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETF-- 1346
+R + V Q+P RD L M V ++ E + A+G +
Sbjct: 81 RRLMRTEWGFVHQNP-------RDGL---RMR-------VSAGANIGERLMAIGARHYGN 123
Query: 1347 --------VKESGI----------SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
++E I +FS G +Q + +AR L+ +++ +DE T +D
Sbjct: 124 IRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV 183
Query: 1389 ASILQNAISSECK--GMTVITIAHRISTV-LNMDEILILDHGHLV 1430
+ L + + + G+ VI + H + L +L++ G +V
Sbjct: 184 QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 51/247 (20%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG 1274
+ L+ ++ Y P D++F + G +GIVG +G+GK+++L + RLTP G
Sbjct: 4 KPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 1275 -------GQILVDGLNIINTPVRDL-RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIW 1326
D + R L R + V Q+P RD L
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNP-------RDGLRM---------- 104
Query: 1327 SVLEKCHVKEEVEAVG--------------LE------TFVKESGISFSVGQRQLICLAR 1366
V ++ E + A+G LE + + +FS G +Q + +AR
Sbjct: 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164
Query: 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTV-LNMDEILI 1423
L+ +++ +DE T +D + L + + + G+ V+ + H ++ L D +++
Sbjct: 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMV 224
Query: 1424 LDHGHLV 1430
+ G +V
Sbjct: 225 MKQGQVV 231
|
Length = 258 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 64/225 (28%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+L V L + +G VA++G GSGKS+LL + G + G + G
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 669 ----SIAYVPQ---------------VPWILSGTIRDNILFGKNYDPQSYS-ETLKACTL 708
+ +V Q +P L G D ++ + L+A L
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA--------DSRAGAKALLEAVGL 136
Query: 709 DVDISLMVGGDMA-YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767
G + Y + LSGG++ R+ALARA D+ D+ +D
Sbjct: 137 --------GKRLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 768 ILS-----NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
I N G T +L TH+ Q + D + + G++
Sbjct: 185 IADLLFALNRERG-----TTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTR 783
++LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I A G T+
Sbjct: 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETG-----ITQ 194
Query: 784 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSA 814
++ TH V+ A A VV M+ G + G ++
Sbjct: 195 VIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 43/189 (22%)
Query: 637 AVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------------------IAYVPQ 675
A+IG G GKS+ L +I M S H +G+ I V Q
Sbjct: 69 AIIGPSGCGKSTFLRAI-NRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127
Query: 676 VPWILSGTIRDNILFGKNY----DPQSYSE----TLKACTLDVDISLMVGGDMAYIGEKG 727
P +I DNI +G D + E +L+ L ++S + +
Sbjct: 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNA 180
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI--LSNAIMGPHMLQKTRIL 785
+ LSGGQ+ RL +AR + +I +LD+ SA+D + I L + G + T ++
Sbjct: 181 LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY----TIMI 236
Query: 786 CTHNVQAIS 794
THN+Q S
Sbjct: 237 VTHNMQQAS 245
|
Length = 286 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 44/217 (20%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAY---------- 672
+N +S+ + K ++ A+IG G GKS+ L SI M S + G I Y
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLNILDSNI 95
Query: 673 -----------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD--VDISLMVGGD 719
V Q P +I +NI Y E K+ LD V+ SL
Sbjct: 96 NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYA----GERRKS-VLDEIVEESLTKAAL 150
Query: 720 MAYIGEK----GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA--- 772
+ ++ ++LSGGQ+ RL +AR + + +LD+ SA+D +SNA
Sbjct: 151 WDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP------ISNAKIE 204
Query: 773 -IMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQV 807
++ + + I+ THN+ QA+ +D G +
Sbjct: 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241
|
Length = 268 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 37/226 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSI------------LGEMMLTHGSI----- 664
VL+QVS+ P ++ +++G GSGK++ L ++ G+++L SI
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 665 --HASGSIAYVPQVPWILSGTIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVGG 718
+ + Q P +I DN+L G K + + +A +V + V
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA----QVARWILSNAIM 774
++ + LSGGQ+ L LAR + ++ +LD+ SA+D ++ +I S A
Sbjct: 156 RLS---DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD- 211
Query: 775 GPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADLAVS 819
+ T I+ THN+ QA +D + G++ G + L S
Sbjct: 212 -----RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-04
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 29/152 (19%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---------VPWILSG 682
G ++ ++G G GK++ + + G + GS ++Y PQ V +L
Sbjct: 366 DGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-EDLKVSYKPQYISPDYDGTVEDLLRS 424
Query: 683 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLSGGQRARLALA 741
IR +E +K L+ + E+ V LSGG+ R+A+A
Sbjct: 425 AIRSAFG-----SSYFKTEIVKPLNLE------------DLLERPVDELSGGELQRVAIA 467
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
A+ +D+Y+LD+ + +D + R I++ I
Sbjct: 468 AALSREADLYLLDEPSAYLDVE-QRIIVAKVI 498
|
Length = 591 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPVRDLR 1293
L++I+ ++ GT ++G +GAGK+++L+ L + + G+IL++G + ++ +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL----DKNFQ 78
Query: 1294 GRFAVVPQSPFLFEGS-LRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1352
V Q +R+ L F L+ GL
Sbjct: 79 RSTGYVEQQDVHSPNLTVREALR-FSAL--LR-----------------GL--------- 109
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA----SILQNAISSECKGMTVITI 1408
SV QR+ + + L +L LDE T+ +D+Q A L+ S G ++
Sbjct: 110 --SVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADS---GQAILCT 164
Query: 1409 AHRISTVL--NMDEILILDHG 1427
H+ S + D +L+L G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|206743 cd11383, YfjP, YfjP GTPase | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 1250 GIVGRTGAGKSSILNALFR--LTPI------------CGGQILVDGLNIINTPVRDLRGR 1295
G++G+TGAGKSS+ NALF + + Q DGL +++ P RGR
Sbjct: 1 GLMGKTGAGKSSLCNALFGTEVAAVGDRRPTTRAAQAYVWQTGGDGLVLLDLPGVGERGR 60
Query: 1296 F 1296
Sbjct: 61 R 61
|
The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 18/245 (7%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
++ + L+ +SL +G ++ ++G GSGKS+L N I G + T G + +G ++ V
Sbjct: 31 KHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS-V 89
Query: 674 PQVPWILSGTIR--DNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
+ LSG + +NI F + + +KA T + I G+ Y K
Sbjct: 90 IAISAGLSGQLTGIENIEFKMLCMGFKRKE----IKAMTPKI-IEFSELGEFIYQPVK-- 142
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
S G RA+L + + DI ++D+ LS D A+ L + I KT +H
Sbjct: 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCL-DKIYEFKEQNKTIFFVSH 201
Query: 789 NV-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASS 847
N+ Q + ++ G++K G D+ + Y F N+F +++E R
Sbjct: 202 NLGQVRQFCTKIAWIEGGKLKDYGELDDV-LPKYEAF--LNDFKKKSKAEQKEFRNKLDE 258
Query: 848 ANKQI 852
+ I
Sbjct: 259 SRFVI 263
|
Length = 264 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 28/197 (14%)
Query: 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVRDLRGRFAVVPQSPFLFE 1307
G+VG G GKS++ L L G +L G L+ + LR + A V Q P
Sbjct: 31 GLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP---- 86
Query: 1308 GSLRDNLDPFHMNDDLKIWSVLEKCHVKEE---------VEAVGLETFVKESGISFSVGQ 1358
F+ + D I L V E + V + F + S GQ
Sbjct: 87 -----EQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQ 141
Query: 1359 RQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITIAHRIST 1414
++ + +A AL+ ++ L LDE TA +D Q +I++ ++ +G VI +H I
Sbjct: 142 KKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA---QGNHVIISSHDIDL 198
Query: 1415 VLNM-DEILILDHGHLV 1430
+ + D + +L G ++
Sbjct: 199 IYEISDAVYVLRQGQIL 215
|
Length = 271 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 5e-04
Identities = 60/202 (29%), Positives = 95/202 (47%), Gaps = 31/202 (15%)
Query: 1246 GTQVGIVGRTGAGKSSILNALF-RLTP--ICGGQILVDGLNIINTPVR--------DLRG 1294
GT ++G +GAGK+++LN L R+T I GG LV+G + ++ R DL
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHL 848
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETF----VKE 1349
+ V +S F LR P + S EK EEV + + +E++ V
Sbjct: 849 PTSTVRES-LRFSAYLRQ---PKSV-------SKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 1350 SGISFSVGQRQLICLARALLKSSKVLC-LDECTANVDAQTA-SILQNAISSECKGMTVIT 1407
G +V QR+ + + L+ K+L LDE T+ +D+QTA SI + G ++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILC 957
Query: 1408 IAHRISTVL--NMDEILILDHG 1427
H+ S +L D +L+L G
Sbjct: 958 TIHQPSAILFEEFDRLLLLQKG 979
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 92/375 (24%), Positives = 151/375 (40%), Gaps = 66/375 (17%)
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT----LLTKIVNAPVLFFDQ-- 988
S Y++V+ I MF S TL ++ G KV T L I+ + FFDQ
Sbjct: 869 SLYILVIAI-AMFIS-ETLKNYYNNVIGE-----KVEKTMKRRLFENILYQEISFFDQDK 921
Query: 989 -TPGGRILNRFSSDLYMIDDSLPFILNILL-ANFVGLLGIAVVLS-YVQVFFLLLLVPFW 1045
PG + + D++++ L + NI++ +F+ L +++V+S Y +L +
Sbjct: 922 HAPG-LLSAHINRDVHLLKTGL--VNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978
Query: 1046 FIYSKLQFFYR-----STSRELRRLDSVSRSPIYASFTETLNGSS-----------TIRA 1089
FI+ ++ F R + E + ++ Y S E S T+
Sbjct: 979 FIFMRV-FAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVII 1037
Query: 1090 FKSEDYFMAKFKEHVVLYQRTSYSELT---ASLW-LSLRLQLLAAFIISFIATM-AVIGS 1144
+ EDYF E + Y T + LW S QL FI SF + +
Sbjct: 1038 YGLEDYF-CNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQL---FINSFAYWFGSFLIR 1093
Query: 1145 RGNLPATFSTPGLVGLAL--SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM------ 1196
RG + L SYA ++SL G ++E +S E+ +
Sbjct: 1094 RGTILVDDFMKSLFTFLFTGSYAGKLMSLKG-------DSENAKLSFEKYYPLIIRKSNI 1146
Query: 1197 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGR 1254
DV G + +G IE +V RY +P++P D+ F+ + IVG
Sbjct: 1147 DVRDN---GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPI-YKDLTFSCDSKKTTAIVGE 1202
Query: 1255 TGAGKSSILNALFRL 1269
TG+GKS++++ L R
Sbjct: 1203 TGSGKSTVMSLLMRF 1217
|
Length = 1466 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
VS L G ++ ++GE GSGK++LL I G + G++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 7e-04
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSL---LNSIL----GEMMLTHGSIHASG------- 668
L +++ + KG + A++G G+GKS+L LN IL G ++ I S
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 669 -SIAYVPQVP--WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
S+ V Q P + S ++ ++ FG + VD +L G + ++ +
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKLPEDEVRKRVDNALKRTG-IEHLKD 136
Query: 726 KGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
K + LS GQ+ R+A+A + + +LD+ + +D I+ + L T I
Sbjct: 137 KPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTII 196
Query: 785 LCTHNVQAISA-ADMVVVMDKGQV 807
+ TH++ + D V VM +G+V
Sbjct: 197 IATHDIDIVPLYCDNVFVMKEGRV 220
|
Length = 283 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 36/200 (18%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL--------GEMMLTHGSIHA-- 666
E + +L V L + +G +A+IGE GSGKS+LL +IL GE+ L +H
Sbjct: 20 EHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMD 78
Query: 667 --------SGSIAYVPQVPWILSGTI--RDNI-----LFGKNYDPQSYSETLKACTLDVD 711
+ + +V Q ++L T+ +N+ L G++ QS +
Sbjct: 79 EEARAKLRAKHVGFVFQ-SFMLIPTLNALENVELPALLRGES-SRQSRNGAKALLE---- 132
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
L +G + ++ + LSGG++ R+ALARA D+ D+ +D Q I
Sbjct: 133 -QLGLGKRLDHLPAQ---LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188
Query: 772 AIMGPHMLQKTRILCTHNVQ 791
T IL TH++Q
Sbjct: 189 LFSLNREHGTTLILVTHDLQ 208
|
Length = 228 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 8e-04
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1248 QVGIVGRTGAGKSSILNALFR 1268
+V +VGR GKS+++NAL
Sbjct: 1 RVALVGRPNVGKSTLINALTG 21
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 9e-04
Identities = 30/103 (29%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
VG D G+ V+LSGGQ+ R+++ARA+ ++ + D+ SA+D ++ +L IM
Sbjct: 139 VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLR--IMQ 196
Query: 776 PHMLQ-KTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ KT ++ TH + A + V+ + +G+++ G+ L
Sbjct: 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQL 239
|
Length = 257 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 56/235 (23%), Positives = 90/235 (38%), Gaps = 53/235 (22%)
Query: 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG----------GQILVDGLN 1283
A L D++ IE G ++GR GAGKS++L AL + G G + ++G
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL--AGDLTGGGAPRGARVTGDVTLNGEP 72
Query: 1284 IINTPVRDLRGRFAVVPQSP---FLFEGSLRD--NLDPF----------HMNDDLKIWSV 1328
+ L AV+PQ+ F F S R+ L + H + ++ W
Sbjct: 73 LAAIDAPRLARLRAVLPQAAQPAFAF--SAREIVLLGRYPHARRAGALTHRDGEI-AWQA 129
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---------SSKVLCLDE 1379
L G V + S G+ + AR L + + L LDE
Sbjct: 130 LAL---------AGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDE 180
Query: 1380 CTANVD-AQTASILQN--AISSECKGMTVITIAHRIS-TVLNMDEILILDHGHLV 1430
TA +D A +L ++ + + V+ I H + + D I +L G +V
Sbjct: 181 PTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNLAARHADRIAMLADGAIV 234
|
Length = 272 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-04
Identities = 49/219 (22%), Positives = 84/219 (38%), Gaps = 34/219 (15%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALF--RLTPICGGQILVDGLNIINTPV--RD 1291
L +N T++ G I+G G+GKS++ + + G IL G +++ R
Sbjct: 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERA 75
Query: 1292 LRGRFAVVPQSP----------FL-------FEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
G F + Q P FL + LD LK + L +
Sbjct: 76 RAGLF-LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK--AKLALLGM 132
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA--NVDA-QTASI 1391
EE L V E FS G+++ + + L K+ LDE + ++DA + +
Sbjct: 133 DEEF----LNRSVNE---GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAE 185
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
N + + +IT R+ + D + +L G +V
Sbjct: 186 GINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV 224
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 52/218 (23%), Positives = 90/218 (41%), Gaps = 31/218 (14%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLL---NSILGEMMLTHGSIHASG----------- 668
L +++ + + + A+IG G GKS+ L N + ++ G + G
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 669 --SIAYVPQVPWILSGTIRDNILFG-------KNYDPQSYSETLKACTLDVDISLMVGGD 719
++ V Q P + +I +NI + KN D + + C V + V
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEE--ALVVDCLQKVGLFEEVKDK 135
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+ + + LSGGQ+ RL +ARA+ + +LD+ SA+D + I H L
Sbjct: 136 LK---QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNL 192
Query: 780 QKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+ I+ THN+ Q AD G++ G S +
Sbjct: 193 --SMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228
|
Length = 246 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 32/164 (19%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLL------------NSILGEMMLTHGSIHA-S 667
+L+ +SL P G + +IG GSGKS+LL +L L S A +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84
Query: 668 GSIAYVP-QVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISLMVGG 718
+AY+P Q+P T+R+ + G+ + + +A +L VG
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL-------VG- 136
Query: 719 DMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ + + V+ LSGG+R R +A V S +LD+ SA+D
Sbjct: 137 -LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRI- 784
LSGGQ+ R+A+ARA+ + + D+ +A+D AQ+ I L +T I
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII--------RELAETGIT 193
Query: 785 --LCTHNVQ-AISAADMVVVMDKGQV 807
+ TH V+ A A VV M+ G +
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHI 219
|
Length = 242 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 50/184 (27%)
Query: 611 WYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI 670
WY + +N+ L+ + + + A+IG G GKS+ + + L M+ S+ +G I
Sbjct: 33 WYGEDHALKNINLD-----IHENEVTAIIGPSGCGKSTYIKT-LNRMVELVPSVKTTGKI 86
Query: 671 AY---------------------VPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709
Y V Q P +I DN+ +G P+ + K TLD
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG----PKIHGIKDKK-TLD 141
Query: 710 --VDISLMVGG----------DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 757
V+ SL D AY LSGGQ+ RL +AR + D+ ++D+
Sbjct: 142 EIVEKSLRGAAIWDELKDRLHDNAY------GLSGGQQQRLCIARCLAIEPDVILMDEPT 195
Query: 758 SAVD 761
SA+D
Sbjct: 196 SALD 199
|
Length = 271 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 0.001
Identities = 49/219 (22%), Positives = 103/219 (47%), Gaps = 20/219 (9%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 670
++++++ + + A +G G+GK++ L+ + G + T G++ G S+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005
Query: 671 AYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729
PQ + T+ ++ILF +S+ E L+++ L G E+ +
Sbjct: 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA----QLEMEAMLEDTGLHHKRNEEAQD 1061
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
LSGG + +L++A A + + +LD+ S VD R I ++ + +T I+ TH+
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWD--LLLKYRSGRTIIMSTHH 1119
Query: 790 V-QAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWST 827
+ +A D + ++ +G++ G+ L +GF+ T
Sbjct: 1120 MDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLT 1158
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI----H--ASGSIAYVPQVPWI 679
+S L +G +A+IGE GSGKS+L + G + T G + H G +Y Q
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQ---- 87
Query: 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG-EKGVN--------- 729
R ++F DP + + + +D L + D+ EK +
Sbjct: 88 -----RIRMIF---QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL 139
Query: 730 ----------LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
L+ GQ+ RL LARA+ + + D+ L+++D + R L N ++ L
Sbjct: 140 PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM-RSQLINLML---EL 195
Query: 780 QKTR----ILCTHNV---QAISAADMVVVMDKGQVKWIGSSADLAVS 819
Q+ + I T ++ + IS D V+VM +G+V GS+AD+ S
Sbjct: 196 QEKQGISYIYVTQHLGMMKHIS--DQVLVMHQGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664
VL VSL + G VA+ G G+GKS+LL S+ + G I
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI 65
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 624 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665
VS L G ++ ++GE GSGKS+LL + G + HG+
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 46/188 (24%), Positives = 76/188 (40%), Gaps = 44/188 (23%)
Query: 1212 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLT 1270
D P +I F + + Y P P ++NF I+ +++ +VG G GKS+IL + L
Sbjct: 502 DRPGPPIISFSDASFGY-PGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560
Query: 1271 PICG-------------GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF 1317
P G Q VDGL++ + P+ + F VP E LR +L F
Sbjct: 561 PSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVP------EQKLRAHLGSF 614
Query: 1318 HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+ +L + + + S GQ+ + A+ K +L L
Sbjct: 615 GVTGNLAL-----------------------QPMYTLSGGQKSRVAFAKITFKKPHILLL 651
Query: 1378 DECTANVD 1385
DE + ++D
Sbjct: 652 DEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 49/181 (27%)
Query: 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNIL 689
+GSL + G GSGKS++L++I L G +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIG-----------------------LALGGA-QSATR 53
Query: 690 FGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV----Y 745
+ ++ LSGG++ ALA +
Sbjct: 54 RRSGVKAGCIV-----AAVSAELIFTRLQ-----------LSGGEKELSALALILALASL 97
Query: 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCTHNVQAISAADMVVVMD 803
+Y+LD++ +D + + L+ AI+ L K I+ TH + AD ++ +
Sbjct: 98 KPRPLYILDEIDRGLDPRDGQ-ALAEAIL--EHLVKGAQVIVITHLPELAELADKLIHIK 154
Query: 804 K 804
K
Sbjct: 155 K 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 1238 DINFTIEGGTQV-GIVGRTGAGKSSILNA----LFRLTPICGGQILVD 1280
DI+ + + IVG GAGKSSIL+A L+ TP G L D
Sbjct: 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLGAFSLDD 63
|
Length = 908 |
| >gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
L+AV+GE +GKS+LLN++LGE +L G + I +
Sbjct: 2 LLAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAVITVL 40
|
The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.002
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 42/211 (19%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASGSIAY 672
++ V N V+L + +G++ A+IG G GK++ L +I LT G I G Y
Sbjct: 16 DKQAVKN-VNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 673 VPQVPWIL----------------SGTIRDNILFG------KNYDP--QSYSETLKACTL 708
P+V + + ++ DN++ G ++ D + +L+ L
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAAL 134
Query: 709 DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD-AQVARW 767
++ + LSGGQ+ RL +ARA+ +I ++D+ SA+D A AR
Sbjct: 135 WDEVK-------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTAR- 186
Query: 768 ILSNAIMGPHMLQKTRILCTHNV-QAISAAD 797
+M T I+ THN+ QA +D
Sbjct: 187 --IEDLMTDLKKVTTIIIVTHNMHQAARVSD 215
|
Length = 252 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------HAS 667
V+ VSL + G +V ++G G+GK++ ++G + G+I A
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 668 GSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I Y+PQ I ++ DN++ +E + D LM + ++ +
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE----DRANELMEEFHIEHLRDS 133
Query: 727 -GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
G +LSGG+R R+ +ARA+ +LD+ + VD
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 0.002
Identities = 45/204 (22%), Positives = 86/204 (42%), Gaps = 19/204 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ +T Y + A+ + + G G++G GAGK++ L T + G
Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKE 1336
V G +I+ T + D+ PQ D +D + L +++ L +E
Sbjct: 1997 TVAGKSIL-TNISDVHQNMGYCPQF---------DAIDDLLTGREHLYLYARLRGVPAEE 2046
Query: 1337 -------EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
++++GL + ++S G ++ + A AL+ ++ LDE T +D Q
Sbjct: 2047 IEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQAR 2106
Query: 1390 SILQNAISSECK-GMTVITIAHRI 1412
+L N I S + G V+ +H +
Sbjct: 2107 RMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678
+ L +S+ ++ + G G GKSSLL I G M + G+I+ P+
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 679 I----------LSGTIRDNILF-GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
L T+ +N+ F + Y+ A TL I D+ + EK
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDL--LDEKC 121
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
+LS G + +A+AR + SD+++LD+V + + + R +L+N I
Sbjct: 122 YSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE-NRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.002
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 26/132 (19%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS---GTIRDNI 688
+G ++ ++G G GK++ + G + G + I+Y PQ +I GT+ D +
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQ--YIKPDYDGTVEDLL 421
Query: 689 -----LFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN-LSGGQRARLALAR 742
G +Y SE +K L+ L+ +K V LSGG+ R+A+A
Sbjct: 422 RSITDDLGSSY---YKSEIIKPLQLE---RLL---------DKNVKDLSGGELQRVAIAA 466
Query: 743 AVYHGSDIYMLD 754
+ +D+Y+LD
Sbjct: 467 CLSRDADLYLLD 478
|
Length = 590 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1305
G + +VG GAGKS++L + +T G I G + +L A + Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQ---- 79
Query: 1306 FEGSLRDNLDPFHMNDDLKIWSVLE-KCHVKEEVEAV-------GLETFVKESGISFSVG 1357
PF M +W L K E + L+ + S S G
Sbjct: 80 ------QQTPPFAM----PVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 1358 QRQLICLARALLK-------SSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIA 1409
+ Q + LA +L+ + ++L LDE ++D S L +S+ C+ G+ ++ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 1410 HRIS-TVLNMDEILILDHGHLV 1430
H ++ T+ + +L G L+
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLL 211
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 32/162 (19%)
Query: 626 VSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--------------IA 671
VS + G ++ + G VG+G++ L ++ G + G I G IA
Sbjct: 278 VSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337
Query: 672 YVP----QVPWILSGTIRDNILF--------GKNYDPQSYSETLKACTLDVDISLMVGGD 719
YVP +L +I +NI D + + + I
Sbjct: 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI------K 391
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761
+ LSGG + ++ LAR + + +LD+ +D
Sbjct: 392 TPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433
|
Length = 500 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 13/93 (13%)
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILC 786
SGGQR R+A+ARA+ D+ + D+ +SA+D V +L N +M LQ+ + +
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVL-NLMMD---LQQELGLSYVFI 211
Query: 787 THN---VQAISAADMVVVMDKGQVKWIGSSADL 816
+H+ V+ I AD V+VM G+ G+ +
Sbjct: 212 SHDLSVVEHI--ADEVMVMYLGRCVEKGTKEQI 242
|
Length = 327 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 37/173 (21%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG--LNIINTPVR-DL 1292
L + ++ G + ++G +G+GKS++L L L G++ + G L+ ++ R L
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 1293 RGR--------FAVVP--------QSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
R + F ++P + P L G S R + + K
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----------------RNGAK 128
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
+E +GL + S G++Q + LARA VL DE T N+D QT
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE--MMLTHGSI 664
+L V+L + KG + A++G GSGKS+L +I G +T G+I
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 50/190 (26%), Positives = 70/190 (36%), Gaps = 61/190 (32%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-----------GEMMLTHGSIHASGSIA 671
L + + +P G L V G GSGKSSL+N L E H I I
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHID 70
Query: 672 YVPQV------------PWILSG---TIRDNILF-----GKNYDPQSYSETLK----ACT 707
V + P +G IR+ LF GK Y+ ++ K A
Sbjct: 71 KVIVIDQSPIGRTPRSNPATYTGVFDEIRE--LFCEVCKGKRYNRETLEVRYKGKSIADV 128
Query: 708 LDVDI------------------SLM-VGGDMAYIGEKGVNLSGG--QRARLA--LARAV 744
LD+ + +L VG +G+ LSGG QR +LA L++
Sbjct: 129 LDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRS 188
Query: 745 YHGSDIYMLD 754
G +Y+LD
Sbjct: 189 -TGKTLYILD 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.004
Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV----- 676
+L VS+ + + + A+IG G GKS+ L L M + G + + Q
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKC-LNRMNELESEVRVEGRVEFFNQNIYERR 80
Query: 677 ----------------PWILSGTIRDNILFGKN---YDPQ-SYSETLKACTLDVDISLMV 716
P + ++ DN+ +G + P+ + +++ D D+ +
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI 140
Query: 717 GGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
I + ++LSGGQ+ RL +ARA+ + ++D+ +D +A + + I
Sbjct: 141 KHK---IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP-IASMKVESLIQSL 196
Query: 777 HMLQK-TRILCTHNVQAIS 794
+ + T ++ +HN+ +S
Sbjct: 197 RLRSELTMVIVSHNLHQVS 215
|
Length = 261 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.004
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 29/221 (13%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASGS------ 669
++ +LN V+ G ++AV+G GSGKS+LLN++ G + + G+I A+
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQI 138
Query: 670 ---IAYVPQ----VPWILSGTIRDNILFGKNYD-PQSYSETLKACTLDVDISL--MVGGD 719
+V Q P + T+R+ ++F P+S ++ K + IS + +
Sbjct: 139 LKRTGFVTQDDILYPHL---TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195
Query: 720 MAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
IG + +SGG+R R+++A + + +LD+ S +DA A ++ +
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG---SL 252
Query: 779 LQKTRILCTHNVQAISAA----DMVVVMDKGQVKWIGSSAD 815
QK + + T Q S D V+V+ +G+ + G +D
Sbjct: 253 AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 31/233 (13%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
I + + P AL +N T+ G ++G GAGKS+++ L + G I
Sbjct: 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1278 LVDGLNIIN-TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL--------KIWSV 1328
++ +N + ++ Q E S+ D L + ++L K+ V
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQ-----ELSVIDELT---VLENLYIGRHLTKKVCGV 114
Query: 1329 ----LEKCHVKEEV--EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
+ V+ + VGL+ + E + S+ +Q++ +A+ L+ +KV+ +DE T+
Sbjct: 115 NIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174
Query: 1383 ---NVDAQTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLVC 1431
N + ++ N + E ++ I+H+++ + + D ++ G VC
Sbjct: 175 SLTNKEVDYLFLIMNQLRKEGTA--IVYISHKLAEIRRICDRYTVMKDGSSVC 225
|
Length = 510 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1446 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-257 Score=2436.60 Aligned_cols=1221 Identities=42% Similarity=0.699 Sum_probs=1122.6
Q ss_pred CCCCCCCh--hhHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHh
Q 000521 199 DCNTDSSY--WDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYP 276 (1446)
Q Consensus 199 ~~e~~~~~--~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~ 276 (1446)
.|.+.++. +|+++|||++|++++|||++|+.+|+|+++++++++.+.++|++.|+++.++++++|+++++++++|+|.
T Consensus 123 ~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~~ 202 (1381)
T KOG0054|consen 123 NPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGRT 202 (1381)
T ss_pred CcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHH
Confidence 34455555 9999999999999999999999999999999999999999999999998744345789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 277 YICLGLLKVVNDSIGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355 (1446)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy 355 (1446)
++..++++.+.+...|++|.+++.++++++++ .+.+.||+|+++++++.++++++.++|+|...+.|+|+|+++.++||
T Consensus 203 ~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY 282 (1381)
T KOG0054|consen 203 FLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIY 282 (1381)
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999884 56788999999999999999999999999999999999999999999
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 000521 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIA 435 (1446)
Q Consensus 356 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~ 435 (1446)
+|+|+++...+++.+.|+++|+|++|++|+.++..++|.+|.+|+|+++++++||.++|+++++|++++++++|+|.+++
T Consensus 283 ~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a 362 (1381)
T KOG0054|consen 283 RKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLA 362 (1381)
T ss_pred HhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 436 NLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFT 515 (1446)
Q Consensus 436 ~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1446)
++++++|++.|+.+|+|++.|+|+|+|||+||||+||+.|.++|++.|++|++.++|..++.+++.+++.+.|+++.+++
T Consensus 363 ~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~t 442 (1381)
T KOG0054|consen 363 KKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVT 442 (1381)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCcc
Q 000521 516 FGLFA-LMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSN 594 (1446)
Q Consensus 516 f~~~~-~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~ 594 (1446)
|++|+ ..++.++++++|+++++|++++.|+..+|+.++.++++.+|++|+++||..+|.++..... .+.
T Consensus 443 F~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~--~~~-------- 512 (1381)
T KOG0054|consen 443 FVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER--SPD-------- 512 (1381)
T ss_pred HHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc--CCC--------
Confidence 99999 7788999999999999999999999999999999999999999999999998876632210 011
Q ss_pred CCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeCeEEEEc
Q 000521 595 FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVP 674 (1446)
Q Consensus 595 ~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~~i~yv~ 674 (1446)
...+.+++++|++|+|+++++++ .|+||||+|++|++++|||++||||||||++|+||+++.+|++.++|.+||||
T Consensus 513 -~~~~~~i~i~~~sfsW~~~~~~~---tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~ 588 (1381)
T KOG0054|consen 513 -EAGENAIEIKNGSFSWDSESPEP---TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVP 588 (1381)
T ss_pred -CCCCceEEEeeeeEecCCCCCcc---cccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEec
Confidence 23456799999999999743333 49999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEc
Q 000521 675 QVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754 (1446)
Q Consensus 675 Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLD 754 (1446)
|+|||+||||||||+||++||++||++|+++|+|++|++.+|.||+|+|||+|.||||||||||+||||+|+++||||||
T Consensus 589 Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 589 QQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred cccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhccccCcccccccchhh
Q 000521 755 DVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL 834 (1446)
Q Consensus 755 ep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 834 (1446)
||+||||+||++|||++|+.| .+++||||+|||+++++++||+|++|+||+|.++|+|+|+++.+..+.++..+.+.+.
T Consensus 669 DplSAVDahvg~~if~~ci~~-~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~ 747 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEECIRG-LLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQ 747 (1381)
T ss_pred CcchhhhHhhhHHHHHHHHHh-hhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhh
Confidence 999999999999999999977 8899999999999999999999999999999999999999976665554321111111
Q ss_pred hhh--hhhhhhcccc------hhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhh-hhHHHHHHHHHHHH
Q 000521 835 HMQ--KQEMRTNASS------ANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF-SGWFITLVICLSAI 905 (1446)
Q Consensus 835 ~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~-~g~~~~~~~~~~~~ 905 (1446)
... ....+..... ........++......++..+..++|+++.|.++|++|+.|+++ .|+....+++++.+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v 827 (1381)
T KOG0054|consen 748 EEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFV 827 (1381)
T ss_pred ccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 000 0000000000 00000000011111112245566778889999999999999998 56666666678888
Q ss_pred HHHHHHhhhhhHhhhhhcccCCCCCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 000521 906 LMQASRNGNDLWLSYWVDTTGSSQTK-YSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVL 984 (1446)
Q Consensus 906 ~~~~~~~~~~~wl~~w~~~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ 984 (1446)
..+++..+.++|+++|++........ .+..+|+++|++++++..++.+++++.+..++.++++++|++|+++++|+||+
T Consensus 828 ~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~ 907 (1381)
T KOG0054|consen 828 LTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMS 907 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 99999999999999999875332221 46778999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 985 FFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRR 1064 (1446)
Q Consensus 985 ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~ 1064 (1446)
|||+||+|||+||||+|++.+|..+|..+..++.+++.++++++++++..|+++++++|+.++|++++++|++++||++|
T Consensus 908 FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkR 987 (1381)
T KOG0054|consen 908 FFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKR 987 (1381)
T ss_pred hcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000521 1065 LDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGS 1144 (1446)
Q Consensus 1065 l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~ 1144 (1446)
+|+.+|||+|+||+|+++|+.|||||+.|++|.+++.+++|.+++++|...+++||+++|+|+++++++.++++++++..
T Consensus 988 LesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~ 1067 (1381)
T KOG0054|consen 988 LESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP 1067 (1381)
T ss_pred hhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888643
Q ss_pred cCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccc--cccCCCCCCCCCCCccEEEE
Q 000521 1145 RGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE--LCGYQSLSPDWPFQGLIEFQ 1222 (1446)
Q Consensus 1145 ~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~--~~~~~~~~~~wp~~g~I~f~ 1222 (1446)
. +..++|.+|++++|++++++.++|++++.+++|+.|+||||+.+|.+.|+|. ..+...||++||.+|+|+|+
T Consensus 1068 ~-----~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~ 1142 (1381)
T KOG0054|consen 1068 S-----GLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFE 1142 (1381)
T ss_pred C-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEE
Confidence 2 1146999999999999999999999999999999999999999999998883 12223388999999999999
Q ss_pred EEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCC
Q 000521 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302 (1446)
Q Consensus 1223 nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQd 1302 (1446)
|++++|+|+.|+|||||||+|+||||||||||||||||||+++|+|+.||.+|+|.|||+||+++++++||+++++||||
T Consensus 1143 ~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQd 1222 (1381)
T KOG0054|consen 1143 DLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQD 1222 (1381)
T ss_pred EeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecc
Q 000521 1303 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1446)
Q Consensus 1303 p~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEa 1380 (1446)
|+||+||+|+||||+++++|++||+|||+|+|+++++++ |||++|.|+|.|||.||||++||||||||++|||+||||
T Consensus 1223 PvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1223 PVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred CceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 999999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1381 TS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||++|++||..||++||++|+|||||+||||++||+|||||+|||+|+|+|+|+|.++.
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-207 Score=2103.42 Aligned_cols=1392 Identities=31% Similarity=0.508 Sum_probs=1180.2
Q ss_pred ccchhhhHHHHHhhhhhHHH-HHhhhc-ccccCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-ch
Q 000521 17 FSKCFDDMILDFATNMVTIF-IILIIG-ITQRSPR-QNQRINLMEKVFLHILPLVGACLSSVDVILLLKEKLHGEFV-SY 92 (1446)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 92 (1446)
+.+||.+..+..+++.++.+ ....+- ..++..+ ....+.+..|++...++++ ++++. ++...|..+.... .+
T Consensus 23 ~t~~f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ 98 (1522)
T TIGR00957 23 FTKCFQNTVLAWVPCFYLWVCFPCYFLYLSRHDRGYIQMTHLNKTKTALGFLLWI---VCWAD-LFYSFWERSHGRAPAP 98 (1522)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCcchHHHHHHHHHHHHHH---HHHHH-HHHHHHhccccccccc
Confidence 55999998887766666555 221111 1122222 4445667778776655543 23221 2233333222222 25
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhHHhhhhhhhhh--hh-HHHHHHHHHHHHHH
Q 000521 93 HEWLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIKPVMGILHQLVTFSSFEVLKC--LK-EICLVLLDIMFGIS 169 (1446)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~rt~~~~~~~~~~--~~-~~~~~~~~~~~~~~ 169 (1446)
.+++++++.++++++++++++.||.|+.|||.++.+||++++++|++++||+|........ .. ....+++.++++.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1522)
T TIGR00957 99 VFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAIVDPFRDTTFYIYFALVLS 178 (1522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhcccccccceehhhHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999875321100 00 12233344444443
Q ss_pred HHHHhhccc-cCcccccccccccCCCCCCCCCCCCCChhhHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHH
Q 000521 170 INIIRVKRA-SSRRSSIEESLLSVDGDVEEDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKL 248 (1446)
Q Consensus 170 ~~~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~~~~~~ 248 (1446)
.++. |. .+|+..+.+ . ..+.+++||+++|++||++|||+||++++|||++|+.+|||+++++++++.+.++|
T Consensus 179 ~~~~---~~~~~~~~~~~~-~---~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~ 251 (1522)
T TIGR00957 179 QLVL---SCFSDKSPLFSE-T---NHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVL 251 (1522)
T ss_pred HHHH---HhhcCCCCcccc-c---cccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHH
Confidence 3222 22 222222211 0 11112479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc---------------------------------------CCCCchHHHHHHHHHhHhHHHHHHHHHHHHH
Q 000521 249 LSCWQAQRSC---------------------------------------NCTNPSLVRAICCAYGYPYICLGLLKVVNDS 289 (1446)
Q Consensus 249 ~~~w~~~~~~---------------------------------------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~ 289 (1446)
++.|+++.++ +.++++|+++++++|++.++..++++++.++
T Consensus 252 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~ 331 (1522)
T TIGR00957 252 VENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDL 331 (1522)
T ss_pred HHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999875310 1134789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC
Q 000521 290 IGFAGPLLLNKLIKFLQQG-SGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSE 368 (1446)
Q Consensus 290 ~~~~~P~ll~~li~~~~~~-~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~ 368 (1446)
+.+++|++++.+++++.++ .+.+.||++++++++++++.+++.++|.|...+++.++|++|+..||+|+|+++...+++
T Consensus 332 ~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~ 411 (1522)
T TIGR00957 332 MMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKS 411 (1522)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 9999999999999999763 344568999999999999999999999999999999999999999999999999999888
Q ss_pred CChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 369 FSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQ 448 (1446)
Q Consensus 369 ~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (1446)
.++|+++|+|++|++++..+...+|.+|..|++++++++++|.++|+++++|++++++++|++.++++++++.++++++.
T Consensus 412 ~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1522)
T TIGR00957 412 STVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKS 491 (1522)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC
Q 000521 449 KDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALM--GHQL 526 (1446)
Q Consensus 449 ~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~L 526 (1446)
+|+|++.++|+++|||+||+||||+.+.+++++.|++|++..++..+...+..+.+...|.++.+++|++|.+. ++.+
T Consensus 492 ~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l 571 (1522)
T TIGR00957 492 KDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNIL 571 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999998888887777888888888999999876 4679
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEe
Q 000521 527 DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 606 (1446)
Q Consensus 527 t~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 606 (1446)
+++.+|+++++++++..|+..+|..++.+.++++|++||++||+.++.++..... ... .......++++|
T Consensus 572 ~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~--------~~~~~~~i~~~~ 641 (1522)
T TIGR00957 572 DAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIER--RTI--------KPGEGNSITVHN 641 (1522)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc--ccc--------CCCCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999876543211000 000 001123699999
Q ss_pred cEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeCeEEEEcCCCCCCCccHHH
Q 000521 607 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRD 686 (1446)
Q Consensus 607 ~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~~i~yv~Q~p~l~~~ti~~ 686 (1446)
++|+|+.. + +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+||||||+||++++||||
T Consensus 642 ~~~~~~~~-~---~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~e 717 (1522)
T TIGR00957 642 ATFTWARD-L---PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRE 717 (1522)
T ss_pred eEEEcCCC-C---CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHH
Confidence 99999642 1 2459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHH
Q 000521 687 NILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVAR 766 (1446)
Q Consensus 687 nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~ 766 (1446)
||.||.++|+++|++++++|++.+|++.+|+||+|.+|++|.+|||||||||+||||+|++|++++||||||+||+++++
T Consensus 718 NI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~ 797 (1522)
T TIGR00957 718 NILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797 (1522)
T ss_pred HhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcC-cccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhccccCcccccccchhh-----hhh---
Q 000521 767 WILSNAIMG-PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSL-----HMQ--- 837 (1446)
Q Consensus 767 ~i~~~~~~~-~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~-----~~~--- 837 (1446)
++++.+... .+.+++|+|+|||+++.++.||+|++|++|+++++|+++++.++.+.+..+..+..... +..
T Consensus 798 ~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 877 (1522)
T TIGR00957 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTA 877 (1522)
T ss_pred HHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhccccccccccccccc
Confidence 999986521 15678999999999999999999999999999999999999765443332211000000 000
Q ss_pred ---hhhhhh-------cc---cchhh-h------h--hh---h---cc--ccccCCcchhHHHHHHHHhcCcchhHhHHH
Q 000521 838 ---KQEMRT-------NA---SSANK-Q------I--LL---Q---EK--DVVSVSDDAQEIIEVEQRKEGRVELTVYKN 887 (1446)
Q Consensus 838 ---~~~~~~-------~~---~~~~~-~------~--~~---~---~~--~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 887 (1446)
.+..+. .. ..+.. . . .. . .. +..+..+...+..++|.++.|.+++++|++
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 957 (1522)
T TIGR00957 878 LVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWD 957 (1522)
T ss_pred cccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcccHHHHHH
Confidence 000000 00 00000 0 0 00 0 00 000000011234456777889999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 888 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 967 (1446)
Q Consensus 888 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 967 (1446)
|+++.|+..+++++++.++.+++..++++|+++|++............+|+++|++++++..++.++..+++.+.+.+++
T Consensus 958 Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~ 1037 (1522)
T TIGR00957 958 YMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQAS 1037 (1522)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887766666777777888889999999999753211122334567889999999999888888888899999999
Q ss_pred HHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHH
Q 000521 968 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1047 (1446)
Q Consensus 968 ~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~ 1047 (1446)
+++|++++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.++++++..|+++++++|++++
T Consensus 1038 ~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~ 1117 (1522)
T TIGR00957 1038 RVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLL 1117 (1522)
T ss_pred HHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888899998888998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000521 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQL 1127 (1446)
Q Consensus 1048 ~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1127 (1446)
+++++++|.+++|++++++.++++|+++++.|+++|+.|||+||+|++|.+++.+..|.++++.+...+.++|++.++++
T Consensus 1118 ~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1197 (1522)
T TIGR00957 1118 YFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLEC 1197 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccc--c
Q 000521 1128 LAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--G 1205 (1446)
Q Consensus 1128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~--~ 1205 (1446)
++.+++.+++.+.+.. .+..++|.+|++++|+..+..++.++++.++++|++++|++|+.+|.+.|+|+.. +
T Consensus 1198 ~~~~~~~~~~~~~v~~------~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~ 1271 (1522)
T TIGR00957 1198 VGNCIVLFAALFAVIS------RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQ 1271 (1522)
T ss_pred HHHHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 8876555444444321 2345799999999999999999999999999999999999999999988877531 2
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC
Q 000521 1206 YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII 1285 (1446)
Q Consensus 1206 ~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~ 1285 (1446)
...++++||.+|.|+|+||+|+|+++.++||+|+||+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+
T Consensus 1272 ~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~ 1351 (1522)
T TIGR00957 1272 ETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIA 1351 (1522)
T ss_pred CCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEcc
Confidence 23455679999999999999999877778999999999999999999999999999999999999999999999999999
Q ss_pred CCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHH
Q 000521 1286 NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1286 ~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
+++++++|++|++|||||+||+||||+||||+++++|+|+|+|+++|+++++++++ ||||.++|+|.+||||||||+|
T Consensus 1352 ~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1352 KIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred ccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++++||||+|||+|+|+|+|+|..+.
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl 1507 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLL 1507 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-207 Score=2097.36 Aligned_cols=1409 Identities=31% Similarity=0.519 Sum_probs=1164.6
Q ss_pred CccCCCCcc-ccccc------cccchhhhHHHHHhhhhhHHH-HHhhhc-ccc-cCCcccchhhHHHHHHHHHHHHHHHH
Q 000521 2 DFICPNSPF-VWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-ITQ-RSPRQNQRINLMEKVFLHILPLVGAC 71 (1446)
Q Consensus 2 ~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~k~~~~~~~~~~~~ 71 (1446)
+-+|+.... +|.+. .+.+||++..+..+++..... ..+.+- .++ .+...+..+..+.|..+.++++...+
T Consensus 7 ~~~c~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1622)
T PLN03130 7 DWYCRPVPNGVWAKKVDNAFGAYTPCATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCTA 86 (1622)
T ss_pred hhhcCCCccCCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHHH
Confidence 347964322 35553 466999995444444433332 111111 111 12222333356666666555544333
Q ss_pred HHHHHHHHH---HHHhhc-CcccchhH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhH
Q 000521 72 LSSVDVILL---LKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLV 143 (1446)
Q Consensus 72 ~~~~~~~~~---~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt 143 (1446)
..++..... ..+... ..+..+.. +++.++..++++++.++.+.||.|+.+++..+.+||++. +++.++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 164 (1622)
T PLN03130 87 EPLFRLVMGISVLNLDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLVLS-- 164 (1622)
T ss_pred HHHHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHHHH--
Confidence 333221111 011110 11122333 566778888888778889999999999999999999999 77776621
Q ss_pred Hhhhhhhhh---hhhHHHHHHHHHHHHHHHHHHhhccccCcccccc---cccc------cCCCCCCCCCCCCCChhhHHH
Q 000521 144 TFSSFEVLK---CLKEICLVLLDIMFGISINIIRVKRASSRRSSIE---ESLL------SVDGDVEEDCNTDSSYWDLMA 211 (1446)
Q Consensus 144 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~------~~~~~~~~~~e~~~~~~s~~~ 211 (1446)
..+.... .. ....+++.+++.++.+ ...+..++..... .+.. +.....+++||+++|++||++
T Consensus 165 --~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~ 239 (1622)
T PLN03130 165 --VKEYYSSFVLYL-YISEVAAQVLFGILLL--VYFPNLDPYPGYTPIGSESVDDYEYEELPGGEQICPERHANIFSRIF 239 (1622)
T ss_pred --HHHHHhccccce-ehhHHHHHHHHHHHHH--HHHhcCCCCcccccccccccccccccCCcccCCCCcccccCHHHHHH
Confidence 1111111 11 2222333333333221 1112222211110 0100 001112258999999999999
Q ss_pred HHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 000521 212 FKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIG 291 (1446)
Q Consensus 212 f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 291 (1446)
|||++|++++|||++|+.+|||+++++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++..++.
T Consensus 240 F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~ 317 (1622)
T PLN03130 240 FGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL-K-KPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQ 317 (1622)
T ss_pred HHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999865 2 35689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh
Q 000521 292 FAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD 371 (1446)
Q Consensus 292 ~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~ 371 (1446)
+++|++++.+++++.+....+.+++++++++++.++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++
T Consensus 318 ~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~ 397 (1622)
T PLN03130 318 FVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTS 397 (1622)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCH
Confidence 99999999999999764444567777777777777777778888888899999999999999999999999998888899
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 372 GEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 451 (1446)
Q Consensus 372 g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 451 (1446)
|+++|+|++|++++.+....+|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++.++++++.+|+
T Consensus 398 G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~ 477 (1622)
T PLN03130 398 GKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDK 477 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHH
Q 000521 452 RIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMV 531 (1446)
Q Consensus 452 R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ 531 (1446)
|.+.++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++.+++|++|.+.++.+|++.+
T Consensus 478 r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~v 557 (1622)
T PLN03130 478 RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARA 557 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999888888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEecEEEe
Q 000521 532 FTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSW 611 (1446)
Q Consensus 532 ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w 611 (1446)
|+++++++.+..|+..+|..+..+.++++|++||++|++.+|..+... .+. ......|+++|++|+|
T Consensus 558 f~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~----~~~---------~~~~~~I~~~nvsf~y 624 (1622)
T PLN03130 558 FTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN----PPL---------EPGLPAISIKNGYFSW 624 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC----Ccc---------cCCCCceEEEeeEEEc
Confidence 999999999999999999999999999999999999998765422100 000 0122469999999999
Q ss_pred cCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCC-cEEEEeCeEEEEcCCCCCCCccHHHHHhc
Q 000521 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-GSIHASGSIAYVPQVPWILSGTIRDNILF 690 (1446)
Q Consensus 612 ~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~-G~i~~~~~i~yv~Q~p~l~~~ti~~nI~~ 690 (1446)
+..++ +++|+|+||++++|++++|+||+|||||||+++|+|+++|.+ |+|.++++||||+|+|||||+||||||+|
T Consensus 625 ~~~~~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~f 701 (1622)
T PLN03130 625 DSKAE---RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILF 701 (1622)
T ss_pred cCCCC---CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhC
Confidence 75322 346999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHH
Q 000521 691 GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770 (1446)
Q Consensus 691 g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~ 770 (1446)
|+++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|++
T Consensus 702 g~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~ 781 (1622)
T PLN03130 702 GSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781 (1622)
T ss_pred CCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhccccCcccccccchhhhhhh--hhhh-hcccc
Q 000521 771 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQK--QEMR-TNASS 847 (1446)
Q Consensus 771 ~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~ 847 (1446)
+|+.+ .+++||+|+|||+++.++.||+|++|++|+|+++|+++|+.++.+.+..+..+.....+... .+.. .....
T Consensus 782 ~~l~~-~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1622)
T PLN03130 782 KCIKD-ELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSS 860 (1622)
T ss_pred HHhhH-HhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhccccccccccccccccccccc
Confidence 98766 56889999999999999999999999999999999999998765444332211100000000 0000 00000
Q ss_pred hhh-h---hhhhcccc--ccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhhhhHhhh
Q 000521 848 ANK-Q---ILLQEKDV--VSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW-FITLVICLSAILMQASRNGNDLWLSY 920 (1446)
Q Consensus 848 ~~~-~---~~~~~~~~--~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wl~~ 920 (1446)
... . ........ .+..+......++|+++.|.+++++|++|+++.|. +.+++++++.++.++...++++|+++
T Consensus 861 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~ 940 (1622)
T PLN03130 861 KPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSE 940 (1622)
T ss_pred ccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000000 00000112234567788999999999999998653 34444455666778888899999999
Q ss_pred hhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHc
Q 000521 921 WVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSS 1000 (1446)
Q Consensus 921 w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~ 1000 (1446)
|++.... .......|+++|++++++..++.+++.+++.+.+.+++.++|++++++++++|++|||++|+|+|+|||++
T Consensus 941 w~~~~~~--~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~ 1018 (1622)
T PLN03130 941 WTDQGTP--KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAK 1018 (1622)
T ss_pred HHhcccc--CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHH
Confidence 9975322 12234568889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHh
Q 000521 1001 DLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTET 1080 (1446)
Q Consensus 1001 D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Et 1080 (1446)
|++.+|..++..+..++..++.+++.++++++..|+++++++|+.++++.++++|.+++|++++++.++++|+++|+.|+
T Consensus 1019 Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Et 1098 (1622)
T PLN03130 1019 DLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEA 1098 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999888888888888888888898888888899999999999999999999999999999
Q ss_pred hcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHH
Q 000521 1081 LNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGL 1160 (1446)
Q Consensus 1081 l~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl 1160 (1446)
++|++|||+|+++++|.+++.+..|.+++..+.....++|+++++++++++++.+.+.+.+.... ........++.+|+
T Consensus 1099 l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~-~~~~~~~~~~~~G~ 1177 (1622)
T PLN03130 1099 LNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNG-RAENQAAFASTMGL 1177 (1622)
T ss_pred hCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccccchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999887766555444443211 00011122678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEecCCCCcccce
Q 000521 1161 ALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1238 (1446)
Q Consensus 1161 ~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~ 1238 (1446)
+++|++.+...++++.+.+.++|+.++|+||+.+|.+.|+|+.. +...+++.||.+|.|+|+||+|+|+++.++||+|
T Consensus 1178 ~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~ 1257 (1622)
T PLN03130 1178 LLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHG 1257 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecc
Confidence 99999999999999999999999999999999999998887532 2234556799999999999999998877789999
Q ss_pred eeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC
Q 000521 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH 1318 (1446)
Q Consensus 1239 isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~ 1318 (1446)
+||+|+||||||||||||||||||+++|+|+|+|++|+|.|||+||++++++++|++|++|||||+||+||||+||||++
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~ 1337 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN 1337 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHH
Q 000521 1319 MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396 (1446)
Q Consensus 1319 ~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I 1396 (1446)
+++|+|+|+|+++|+++++++++ ||||.++|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|
T Consensus 1338 ~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I 1417 (1622)
T PLN03130 1338 EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTI 1417 (1622)
T ss_pred CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1397 SSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1397 ~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++.+++||+|+||||++|+++||||+|||+|+|+|+|+|..+.
T Consensus 1418 ~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl 1460 (1622)
T PLN03130 1418 REEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLL 1460 (1622)
T ss_pred HHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999999998764
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-203 Score=2062.27 Aligned_cols=1407 Identities=30% Similarity=0.515 Sum_probs=1158.8
Q ss_pred cCCCCc-cccccc------cccchhhhHHHHHhhhhhHHH-HHhhhc-c-cccCCcccchhhHHHHHHHHHHHHHHHHHH
Q 000521 4 ICPNSP-FVWDGS------TFSKCFDDMILDFATNMVTIF-IILIIG-I-TQRSPRQNQRINLMEKVFLHILPLVGACLS 73 (1446)
Q Consensus 4 ~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 73 (1446)
+|+... ..|.+. .+.+||++..+...++..... ..+.+- . ..++...+..+..+.|+.+.++++...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPCAIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCVVEP 88 (1495)
T ss_pred hcCCccccCCCcccccccCCCCccHHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHHHHH
Confidence 785322 245543 356999995444444433332 211111 1 012222223335666666655555433333
Q ss_pred HHHHHH---HHHHhhc-CcccchhH-HHHHHHHHHHHHHHHHHHHhhccccCCchhHHHHHHHHH---HHHHHHHHhHHh
Q 000521 74 SVDVIL---LLKEKLH-GEFVSYHE-WLSSCSEFTVWTIIVLLSRCACFHCLFCHRILCFWWIIK---PVMGILHQLVTF 145 (1446)
Q Consensus 74 ~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~---~~~~~~~~rt~~ 145 (1446)
++.... ...+... .....+.. +++.++..++++.+..+.+.||.|+.+++..+.+||++. +++.++. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 164 (1495)
T PLN03232 89 VLRLVMGISLFDMDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLVL----P 164 (1495)
T ss_pred HHHHHHHhhhhccccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHHH----H
Confidence 322111 0111111 11122333 666788888888777789999999999999999999999 7777762 1
Q ss_pred hhhhhhh---hhhHHHHHHHHHHHHHHHHHHhhccccCcccccc---ccccc------CCCCCCCCCCCCCChhhHHHHH
Q 000521 146 SSFEVLK---CLKEICLVLLDIMFGISINIIRVKRASSRRSSIE---ESLLS------VDGDVEEDCNTDSSYWDLMAFK 213 (1446)
Q Consensus 146 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~---~~~~~------~~~~~~~~~e~~~~~~s~~~f~ 213 (1446)
..+.... .. ....+++.+.+.+..+ ...|..++..... .+..+ .+....++||+++|+|||++|+
T Consensus 165 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~a~~~s~~~f~ 241 (1495)
T PLN03232 165 LKNSINRTALYL-CISSRCCQALFGILLL--VYIPELDPYPGYHILNNESLDNVEYDALRGGENICPERYASIFSRIYFS 241 (1495)
T ss_pred HHHHHhccccce-ehhHHHHHHHHHHHHH--HhcccCCCCCcccccccccccccccccccccCCCCccccCCHHHHHHHH
Confidence 1111111 11 1222222333222221 1113222211111 01111 0001226799999999999999
Q ss_pred hhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 000521 214 SIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFA 293 (1446)
Q Consensus 214 Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 293 (1446)
|++|++++||+++|+.+|||+|+++++++.+.++|++.|+++. + +++++|+++++++|++.++..++++++.+++.++
T Consensus 242 w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~-~-~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 319 (1495)
T PLN03232 242 WMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES-R-RPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFV 319 (1495)
T ss_pred HHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh-c-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999765 2 3568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhH
Q 000521 294 GPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGE 373 (1446)
Q Consensus 294 ~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~ 373 (1446)
+|++++.++++++++...+.++.+++++++..++.+++.++|.+...+++.++|+.+...+|+|+++++...+++.++|+
T Consensus 320 ~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~ 399 (1495)
T PLN03232 320 GPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGK 399 (1495)
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHH
Confidence 99999999999976444456788888888888888999889999999999999999999999999999998888889999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 374 IQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI 453 (1446)
Q Consensus 374 i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~ 453 (1446)
++|+|++|++++.+....+|.+|..|++++++++++|..+|++++++++++++++|++.++++++++.++++++.+|+|.
T Consensus 400 i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~ 479 (1495)
T PLN03232 400 VTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRV 479 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHH
Q 000521 454 RRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFT 533 (1446)
Q Consensus 454 ~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft 533 (1446)
+.++|+++|||+||+||||+.+.+++++.|++|++..++..+..++..+++...|.++.+++|++|.+.++.+|++.+|+
T Consensus 480 ~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~ 559 (1495)
T PLN03232 480 GIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFT 559 (1495)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999888887777777888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEecEEEecC
Q 000521 534 CLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYC 613 (1446)
Q Consensus 534 ~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~ 613 (1446)
++++++.+..|+..+|..+..+.++++|++||++|++.++..+... .+. ......++++|++|+|+.
T Consensus 560 ~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~----~~~---------~~~~~~I~~~~vsF~y~~ 626 (1495)
T PLN03232 560 SLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN----PPL---------QPGAPAISIKNGYFSWDS 626 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc----CCc---------CCCCCcEEEEeeEEEcCC
Confidence 9999999999999999999999999999999999997665321100 000 012346999999999975
Q ss_pred CCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE-EEEeCeEEEEcCCCCCCCccHHHHHhcCC
Q 000521 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS-IHASGSIAYVPQVPWILSGTIRDNILFGK 692 (1446)
Q Consensus 614 ~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~-i~~~~~i~yv~Q~p~l~~~ti~~nI~~g~ 692 (1446)
.++ +++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|. +.++++||||+|+|||||+||||||+||+
T Consensus 627 ~~~---~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 627 KTS---KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred CCC---CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCC
Confidence 322 34699999999999999999999999999999999999999975 56789999999999999999999999999
Q ss_pred CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHh
Q 000521 693 NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNA 772 (1446)
Q Consensus 693 ~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~ 772 (1446)
++|+++|++++++|+|++|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||++++++|++++
T Consensus 704 ~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~ 783 (1495)
T PLN03232 704 DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783 (1495)
T ss_pred ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhccccCcccccccchhhhhhhhh-hhhcccc-h-h
Q 000521 773 IMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQE-MRTNASS-A-N 849 (1446)
Q Consensus 773 ~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~ 849 (1446)
+.+ .++++|+|+|||+++.++.||+|++|++|+|+++|+++|+.+..+.+..+..+.....+..+.. ...+... . .
T Consensus 784 l~~-~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1495)
T PLN03232 784 MKD-ELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPT 862 (1495)
T ss_pred hhh-hhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhccccccccccccccccccccccc
Confidence 766 5688999999999999999999999999999999999999876544433322111000000000 0000000 0 0
Q ss_pred hhhhhhcc---ccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhh-HHHHHHHHHHHHHHHHHHhhhhhHhhhhhccc
Q 000521 850 KQILLQEK---DVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG-WFITLVICLSAILMQASRNGNDLWLSYWVDTT 925 (1446)
Q Consensus 850 ~~~~~~~~---~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~ 925 (1446)
.+....+. +..+..+......++|+++.|.+++++|++|+++.| ++.+++++++.++.++...++++|+++|++..
T Consensus 863 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~ 942 (1495)
T PLN03232 863 VTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQS 942 (1495)
T ss_pred ccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 00000000 000000011224466778889999999999999865 34444555566677788888999999998753
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhh
Q 000521 926 GSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMI 1005 (1446)
Q Consensus 926 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~i 1005 (1446)
.. ......+|+++|++++++..++.+++.+++.+.+.++++++|++++++++++|++||+++|+|+++|||++|++.+
T Consensus 943 ~~--~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~i 1020 (1495)
T PLN03232 943 TP--KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDI 1020 (1495)
T ss_pred CC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHH
Confidence 21 1223467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchH
Q 000521 1006 DDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1085 (1446)
Q Consensus 1006 d~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~ 1085 (1446)
|..++..+..++..++.+++.++++++..++++++++|+.++++.++.+|.+++|++++.+..+++|+++++.|+++|+.
T Consensus 1021 d~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~ 1100 (1495)
T PLN03232 1021 DRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLS 1100 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChH
Confidence 99999999998888888888877777777887788888888888888999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHH
Q 000521 1086 TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1165 (1446)
Q Consensus 1086 tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~ 1165 (1446)
|||+||++++|.+++.+..|.+++..+.....++|+..++++++++++.+.+.+.+.. .+........++.+|++++|+
T Consensus 1101 tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~ 1179 (1495)
T PLN03232 1101 SIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYT 1179 (1495)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887765554444433332 111101112356788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccc--cCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEE
Q 000521 1166 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELC--GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTI 1243 (1446)
Q Consensus 1166 ~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~--~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I 1243 (1446)
..+..+++++++.+.++|++++|+||+.++.+.|+|+.. +...++++||.+|.|+|+||+|+|+++.++||+|+||+|
T Consensus 1180 ~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I 1259 (1495)
T PLN03232 1180 LNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFV 1259 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEE
Confidence 999999999999999999999999999999998887532 222345679999999999999999887778999999999
Q ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChH
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1323 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ 1323 (1446)
+||||||||||||||||||+++|+|+++|++|+|.|||+||++++++++|++|++|||||++|+||||+||||+++++|+
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sde 1339 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDA 1339 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC
Q 000521 1324 KIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401 (1446)
Q Consensus 1324 ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~ 1401 (1446)
|+|+|+++++++++++++ ||||.++|+|.|||||||||+||||||+|+|+|||||||||+||.+||+.||++|++.++
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~ 1419 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK 1419 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC
Confidence 999999999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1402 GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1402 ~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||+|+||||++|+++||||+|||+|+|+|+|+|..+.
T Consensus 1420 ~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1420 SCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-192 Score=1954.16 Aligned_cols=1215 Identities=27% Similarity=0.456 Sum_probs=1061.0
Q ss_pred CCCCCCChhhHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHhHhHH
Q 000521 199 DCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSCWQAQRSCNCTNPSLVRAICCAYGYPYI 278 (1446)
Q Consensus 199 ~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~~~~~~~~~w~~~~~~~~~~~~l~~~l~~~~~~~~~ 278 (1446)
+||+++|+|||++|||+||++++||+++|+.+|||+|+++++++.+.++|++.|+++..++.++++|+++++++|+|+++
T Consensus 4 ~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~~ 83 (1490)
T TIGR01271 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRFV 83 (1490)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999987653334568999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 279 CLGLLKVVNDSIGFAGPLLLNKLIKFLQQGS--GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQ 356 (1446)
Q Consensus 279 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~ 356 (1446)
..++++++.+++.+++|++++++++++++.. ..+.++++++++++++++.+++.+++.|...++++++|++|...||+
T Consensus 84 ~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~ 163 (1490)
T TIGR01271 84 FYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYK 163 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999996422 23568899999999999999999999999999999999999999999
Q ss_pred HHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 357 KCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 436 (1446)
Q Consensus 357 K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~ 436 (1446)
|+|+++....++.++|+++|+|++|++++..+...+|.+|..|+++++++++||+++|+++++|++++++++|++.++++
T Consensus 164 K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~ 243 (1490)
T TIGR01271 164 KTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQ 243 (1490)
T ss_pred HHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 437 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTF 516 (1446)
Q Consensus 437 ~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 516 (1446)
++.+.++++++.+|+|++.++|+++|||+||+||||+.|.+++++.|++|++..++..++..+...++...|.++++++|
T Consensus 244 ~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 323 (1490)
T TIGR01271 244 KMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSV 323 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888889999999999
Q ss_pred HHHHHhCCCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccC
Q 000521 517 GLFALMGHQLDAAMVFTCLALFNSLISPLN-SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNF 595 (1446)
Q Consensus 517 ~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~-~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~ 595 (1446)
++|.+.++ ++++.+||+++++++++.|+. .+|..+..+.++.+|++||++||..+|.++...
T Consensus 324 ~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~---------------- 386 (1490)
T TIGR01271 324 VPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY---------------- 386 (1490)
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc----------------
Confidence 99988755 789999999999999999985 799999999999999999999998766432100
Q ss_pred CCCCceEEEEecEEEecCCC----------------c-c-----------cccccceeeeeEeeCCcEEEEEcCCCCcHH
Q 000521 596 NSKDMAVIMQDATCSWYCNN----------------E-E-----------EQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647 (1446)
Q Consensus 596 ~~~~~~i~~~~~~f~w~~~~----------------~-~-----------~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 647 (1446)
+.....+.++|++|.|+... . . ..+++|+|+||+|++|++++|+||||||||
T Consensus 387 ~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKS 466 (1490)
T TIGR01271 387 NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKS 466 (1490)
T ss_pred cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHH
Confidence 01123588999999995310 0 0 013579999999999999999999999999
Q ss_pred HHHHHHhcCccCCCcEEEEeCeEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000521 648 SLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1446)
Q Consensus 648 tll~~llg~~~~~~G~i~~~~~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 727 (1446)
|||++|+|+++|++|+|.++|+||||+|+||++++||+|||+||.++++++|++++++|+|++|++.+|+||+|.+|++|
T Consensus 467 TLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g 546 (1490)
T TIGR01271 467 SLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546 (1490)
T ss_pred HHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEE
Q 000521 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1446)
Q Consensus 728 ~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1446)
.+|||||||||+||||+|++|++|||||||||||+++++++++.|+.+ +.+++|+|+|||+++.++.||+|++|++|++
T Consensus 547 ~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~-~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK-LMSNKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhcCCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999987655 5678999999999999999999999999999
Q ss_pred EEecChhHHHhccccCccccc--------------------------c--c-----c-h------hhhhhhhhh------
Q 000521 808 KWIGSSADLAVSLYSGFWSTN--------------------------E--F-----D-T------SLHMQKQEM------ 841 (1446)
Q Consensus 808 ~~~g~~~~l~~~~~~~~~~~~--------------------------~--~-----~-~------~~~~~~~~~------ 841 (1446)
.+.|+++++......+..... + . + . ....+..+.
T Consensus 626 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 705 (1490)
T TIGR01271 626 YFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSII 705 (1490)
T ss_pred EEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999998753211100000 0 0 0 0 000000000
Q ss_pred -------------------------h--hcccch------hh----------hh---------------------h---h
Q 000521 842 -------------------------R--TNASSA------NK----------QI---------------------L---L 854 (1446)
Q Consensus 842 -------------------------~--~~~~~~------~~----------~~---------------------~---~ 854 (1446)
. .....+ .. .. . .
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1490)
T TIGR01271 706 LNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRG 785 (1490)
T ss_pred ccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence 0 000000 00 00 0 0
Q ss_pred ---hcc--cc--------------c-------c-CC-------c----c--hhHHHHHHHHhcCcchhHhHHHHHhhhhH
Q 000521 855 ---QEK--DV--------------V-------S-VS-------D----D--AQEIIEVEQRKEGRVELTVYKNYAKFSGW 894 (1446)
Q Consensus 855 ---~~~--~~--------------~-------~-~~-------~----~--~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 894 (1446)
.+. +. . . .. + + .....++|+++.|.++|++|++|+++.|+
T Consensus 786 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~ 865 (1490)
T TIGR01271 786 ENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRN 865 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCc
Confidence 000 00 0 0 00 0 0 01124456778899999999999998765
Q ss_pred -HHHHHHHHHHHHHHHHHhhhhhHhhhhhcccC-----C-CCC-----------CcchhhH-HHHHHHHHHHHHHHHHHH
Q 000521 895 -FITLVICLSAILMQASRNGNDLWLSYWVDTTG-----S-SQT-----------KYSTSFY-LVVLCIFCMFNSFLTLVR 955 (1446)
Q Consensus 895 -~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-----~-~~~-----------~~~~~~~-l~~~~~l~~~~~~~~~~~ 955 (1446)
..+++++++.++.+++..++++|+.+|..... . .+. .....+| +.+|+++.++..++.+++
T Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1490)
T TIGR01271 866 LVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFR 945 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 44444456667778899999999999875210 0 000 0011233 445555555566777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhH
Q 000521 956 AFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV 1035 (1446)
Q Consensus 956 ~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~ 1035 (1446)
.+++...+.++++++|++++++++++|++||+++|+|+++|||++|++.+|+.+|..+..++..++.+++.++++++..|
T Consensus 946 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p 1025 (1490)
T TIGR01271 946 GLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQP 1025 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1036 FFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSEL 1115 (1446)
Q Consensus 1036 ~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~ 1115 (1446)
+++++++|+++++++++++|.+++|++++++..+++|+++|+.|+++|+.|||+||++++|.+++.+.++.+++..+...
T Consensus 1026 ~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1105 (1490)
T TIGR01271 1026 YIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYL 1105 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000521 1116 TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY 1195 (1446)
Q Consensus 1116 ~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~ 1195 (1446)
+.++|+..++++++.+++..++++++.. ....+|.+|++++|++.+...++++++.+.++|+.+.|++|+.+|
T Consensus 1106 ~~~~wl~~~~~~i~~~~~~~~~~l~~~~-------~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~ 1178 (1490)
T TIGR01271 1106 STLRWFQMRIDIIFVFFFIAVTFIAIGT-------NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKF 1178 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988765444433333321 113467799999999999999999999999999999999999999
Q ss_pred hcCCcccccc----------------CCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCH
Q 000521 1196 MDVPQEELCG----------------YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259 (1446)
Q Consensus 1196 ~~~~~e~~~~----------------~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGK 1259 (1446)
.+.|+|+... ...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||||||||||||||
T Consensus 1179 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1179 IDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred hcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCH
Confidence 9887764211 012345799999999999999999877899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHH
Q 000521 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVE 1339 (1446)
Q Consensus 1260 STLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~ 1339 (1446)
|||+++|+|+++ .+|+|.|||+||++++++++|++|++|||||+||+||||+||||+++++|+++|+||++++++++++
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHH
Confidence 999999999998 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh
Q 000521 1340 AV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN 1417 (1446)
Q Consensus 1340 ~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~ 1417 (1446)
++ ||||.|+|+|.||||||||||||||||||+|+|||||||||+||.+||+.||++|++.|++||||+||||++++.+
T Consensus 1338 ~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE 1417 (1490)
T ss_pred hCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 98 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCEEEEEeCCEEEEEeccchhh
Q 000521 1418 MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1418 ~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||+|||+|+|+|+|+|..+.
T Consensus 1418 ~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1418 CQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999998775
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-182 Score=1847.87 Aligned_cols=1234 Identities=32% Similarity=0.523 Sum_probs=1052.3
Q ss_pred CCCCCCCChhhHHHHHhhHHHHHccccCCCCCCCCCCCCCCCChhHHHHHHHHH----------HHHhhh----------
Q 000521 198 EDCNTDSSYWDLMAFKSIDSVMNRGVIKQLDFEDLLGLPTDMDPSTCHSKLLSC----------WQAQRS---------- 257 (1446)
Q Consensus 198 ~~~e~~~~~~s~~~f~Wl~pl~~~g~~~~L~~~Dl~~l~~~~~s~~~~~~~~~~----------w~~~~~---------- 257 (1446)
+.||+++||+.|+++.|++|++.+..|..|+.+|||+-..+.++-++..++.+. |+-...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 468999999999999999999999999999999999988888876665555443 321000
Q ss_pred -------------------------------c------------------------------------------------
Q 000521 258 -------------------------------C------------------------------------------------ 258 (1446)
Q Consensus 258 -------------------------------~------------------------------------------------ 258 (1446)
+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred ---------CCCCchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHHHHH
Q 000521 259 ---------NCTNPSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG-HLDGYVLAIALGLTSILK 328 (1446)
Q Consensus 259 ---------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~g~~l~~~l~~~~~~~ 328 (1446)
.++..+|+++++++|++.++..++++++.+++.+++|++++.++++++++.. ...++++++++++++++.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 0123479999999999999999999999999999999999999999976333 345788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 329 SFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERS--EFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVAL 406 (1446)
Q Consensus 329 ~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~--~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~ 406 (1446)
+++.++|.|...+.+.++|++|...+|+|+++++..+.. +.++|+++|+|++|++++..+..++|.+|..|+++++++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887664 568899999999999999999999999999999999999
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHH
Q 000521 407 YLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSE 486 (1446)
Q Consensus 407 ~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~E 486 (1446)
++||+.+|+++++|++++++++|++.++++++.+.++++++++|+|++.++|+++|||+||+||||+.|.+++++.|++|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 487 VKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 566 (1446)
Q Consensus 487 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~ 566 (1446)
++.+++..+..++..++++++|.++.+++|++|.+.++.||++.+||+++++++++.|+..+|..++.+.++++|++||+
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~ 538 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIS 538 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCchh----hhh-----hcCCCCcc----cCC----------------------------------CccCCCCC
Q 000521 567 RFLGCSEYKHE----LEQ-----AANSPSYI----SNG----------------------------------LSNFNSKD 599 (1446)
Q Consensus 567 ~fL~~~e~~~~----~~~-----~~~~~~~~----~~~----------------------------------~~~~~~~~ 599 (1446)
+||+.+|.... ... ....+... ... ........
T Consensus 539 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1560)
T PTZ00243 539 TFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPS 618 (1560)
T ss_pred HHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 99987663110 000 00000000 000 00000112
Q ss_pred ceEEEEecEEEecCCCc----------------------------------ccccccceeeeeEeeCCcEEEEEcCCCCc
Q 000521 600 MAVIMQDATCSWYCNNE----------------------------------EEQNVVLNQVSLCLPKGSLVAVIGEVGSG 645 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~----------------------------------~~~~~~l~~i~l~i~~G~~~~ivG~~GsG 645 (1446)
..+.++|++|+|+.... ...+++|+|+||+|++|++++|+||||||
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsG 698 (1560)
T PTZ00243 619 PSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSG 698 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCc
Confidence 34667777777642100 01235799999999999999999999999
Q ss_pred HHHHHHHHhcCccCCCcEEEEeCeEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccC
Q 000521 646 KSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725 (1446)
Q Consensus 646 KStll~~llg~~~~~~G~i~~~~~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~ 725 (1446)
||||+++|+|+++|++|+|.++++||||+|+||++++||+|||.|+.++++++|++++++|+|++|++.+|+|++|.+|+
T Consensus 699 KSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~ 778 (1560)
T PTZ00243 699 KSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778 (1560)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcC
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCC
Q 000521 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 805 (1446)
Q Consensus 726 ~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 805 (1446)
+|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+ ..+++|+|++||+++.++.||+|++|++|
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~~~~ad~ii~l~~G 857 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLG-ALAGKTRVLATHQVHVVPRADYVVALGDG 857 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987665 45689999999999999999999999999
Q ss_pred EEEEecChhHHHhccccCccccccc---ch--hhhhhhh--hhhhccc---c-h---hhhhhh-hccccccCCcchhHHH
Q 000521 806 QVKWIGSSADLAVSLYSGFWSTNEF---DT--SLHMQKQ--EMRTNAS---S-A---NKQILL-QEKDVVSVSDDAQEII 870 (1446)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~~~~~~---~~--~~~~~~~--~~~~~~~---~-~---~~~~~~-~~~~~~~~~~~~~~~~ 870 (1446)
++.++|+++++.+... +..+.... .. ......+ ..+.... . . ..+... ...+............
T Consensus 858 ~i~~~G~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 936 (1560)
T PTZ00243 858 RVEFSGSSADFMRTSL-YATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLM 936 (1560)
T ss_pred EEEEecCHHHHHhChH-HHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 9999999999875421 11111100 00 0000000 0000000 0 0 000000 0000000001122345
Q ss_pred HHHHHhcCcchhHhHHHHHhhhhHHH-HHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHH
Q 000521 871 EVEQRKEGRVELTVYKNYAKFSGWFI-TLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNS 949 (1446)
Q Consensus 871 ~~e~~~~g~v~~~~y~~y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~ 949 (1446)
++|+++.|.++|++|++|++..|... ++.++++.++.+++..++++|+++|++... ......|+++|+++.++..
T Consensus 937 ~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~----~~~~~~~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 937 TREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSF----KLSAATYLYVYLGIVLLGT 1012 (1560)
T ss_pred hHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----CCCcccHHHHHHHHHHHHH
Confidence 56777889999999999999876443 344444555667788889999999987421 1223467888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhh
Q 000521 950 FLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVV 1029 (1446)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~ 1029 (1446)
++..++.+.....+.++++++|+.++++++++|++|||++|+|+++|||++|++.+|+.++..+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788889999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHH
Q 000521 1030 LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109 (1446)
Q Consensus 1030 ~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~ 1109 (1446)
+++..|+++++++|+.++++.+.++|.+..|++++.+..+++|+++++.|+++|+.|||+||++++|.+++.+..|.+.+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88888988888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000521 1110 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSL 1189 (1446)
Q Consensus 1110 ~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv 1189 (1446)
+.+.....++|+..+++++..+++.+++++.+..... ..+..++|.++++++|+..+..+++++++.+.++|+++.|+
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~ 1250 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTML--RATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSV 1250 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876554444433322110 11224689999999999999999999999999999999999
Q ss_pred HHHHHHhcC-Ccccccc-------------------------CCCCC---CCCCCCccEEEEEEEEEecCCCCcccceee
Q 000521 1190 ERVLEYMDV-PQEELCG-------------------------YQSLS---PDWPFQGLIEFQNVTMRYKPSLPAALHDIN 1240 (1446)
Q Consensus 1190 ~Ri~~~~~~-~~e~~~~-------------------------~~~~~---~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is 1240 (1446)
+|+.+|.+. |+|+... ...++ +.||..|.|+|+||+|+|+++.++||+|||
T Consensus 1251 eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vs 1330 (1560)
T PTZ00243 1251 ERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVS 1330 (1560)
T ss_pred HHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecce
Confidence 999999964 3332100 01111 235677999999999999887778999999
Q ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCC
Q 000521 1241 FTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1320 (1446)
Q Consensus 1241 l~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~ 1320 (1446)
|+|+||||||||||||||||||+++|+|+++|++|+|.|||+||+++++++||++|++|||||+||+||||+||||++++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~ 1410 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEA 1410 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEeccCCCCCHHHHHHHHHHHH
Q 000521 1321 DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS-SKVLCLDECTANVDAQTASILQNAIS 1397 (1446)
Q Consensus 1321 ~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~-~~ILlLDEaTS~lD~~Te~~Iq~~I~ 1397 (1446)
+|+|+|+|+++|+++++++++ ||||.++|+|.|||||||||||||||||++ |+|||||||||+||.+||+.||++|+
T Consensus 1411 sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1411 SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999999999999999996 89999999999999999999999999
Q ss_pred HhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1398 SECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1398 ~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+.|++||||+||||++|+.+||||+|||+|+|+|+|+|..+.
T Consensus 1491 ~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1491 SAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred HHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999998775
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-143 Score=1348.51 Aligned_cols=1142 Identities=21% Similarity=0.251 Sum_probs=840.4
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccCCC------chHHHHHHHHHHHHHHHHHHH-HH
Q 000521 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLL---NKLIKFLQQGSG------HLDGYVLAIALGLTSILKSFF-DT 333 (1446)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll---~~li~~~~~~~~------~~~g~~l~~~l~~~~~~~~~~-~~ 333 (1446)
++++-+..+-++++++..+-.+...+-...+|++. ..+.+.+....+ ...-.++.+.+.+..++.+++ ..
T Consensus 14 ~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 14 SFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred chHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344456667777777777777788888754 333443332111 111111111222222222222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 000521 334 QYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-----SFHDAWSLPFQIGVALYL 408 (1446)
Q Consensus 334 ~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-----~~~~~~~~pl~i~i~~~l 408 (1446)
.+.+...|...++|......+ ||.+.+.++....|++.+-|+.|+++++++.. ++|.+-....-++++++.
T Consensus 94 c~~~~geRq~~riR~~yl~~i----LrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 94 CWMRTGERQTARIRSKYLKAI----LRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777766555 55666777777779999999999999998643 333333333333443333
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Q 000521 409 LYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVK 488 (1446)
Q Consensus 409 L~~~lg~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~ 488 (1446)
.|++- ++.+.+..++.......++.+.+...+.+++..+.-+...|++++||+|-.|+.|+...++..+.-+.-.+
T Consensus 170 -~W~Lt---lv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k 245 (1228)
T KOG0055|consen 170 -GWKLT---LVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALK 245 (1228)
T ss_pred -HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHH
Confidence 33333 33444444455556777888888888888888899999999999999999999999888887766444444
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 489 HLSTRKYLDAWCVFFW--ATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLT 566 (1446)
Q Consensus 489 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~ 566 (1446)
...+......+...+. .+.......+|||..++..+..+++++|+.+...-.-...|.+..+.++.+.+|+++..+|.
T Consensus 246 ~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~ 325 (1228)
T KOG0055|consen 246 FGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIF 325 (1228)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHH
Confidence 4444444443332222 22223445688887777778899999999886666667788899999999999999999999
Q ss_pred HHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcH
Q 000521 567 RFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 646 (1446)
Q Consensus 567 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 646 (1446)
+-++....-+.... ++. ......+.|+++|+.|+||++++ .++|+|+||+||+|+.+++||||||||
T Consensus 326 ~~i~~~~~i~~~~~---------~~~-~~~~~~g~ief~nV~FsYPsRpd---v~Il~g~sl~i~~G~~valVG~SGsGK 392 (1228)
T KOG0055|consen 326 ETIDRKPSIDPYSK---------GGR-VLSSIKGEIEFRNVCFSYPSRPD---VKILKGVSLKIPSGQTVALVGPSGSGK 392 (1228)
T ss_pred HHhcCCCCCCcccc---------cCC-cccccccceEEEEEEecCCCCCc---chhhCCeEEEeCCCCEEEEECCCCCCH
Confidence 99865432221110 000 11235678999999999998754 456999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHH
Q 000521 647 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDI 712 (1446)
Q Consensus 647 Stll~~llg~~~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di 712 (1446)
||++++|.|+|+|++|+|.++| +||.|+|+|.||++||+|||.||+| -+.++..++++....++.+
T Consensus 393 ST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi 472 (1228)
T KOG0055|consen 393 STLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFI 472 (1228)
T ss_pred HHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHH
Confidence 9999999999999999999997 5999999999999999999999986 4678888999998999999
Q ss_pred hhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch
Q 000521 713 SLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA 792 (1446)
Q Consensus 713 ~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~ 792 (1446)
..+|+|++|.+||+|..|||||||||||||||.++|+||||||||||||+++++.+.+ ++.. ..+|+|.|+|+||++.
T Consensus 473 ~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~-ALd~-~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 473 LKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQE-ALDK-ASKGRTTIVVAHRLST 550 (1228)
T ss_pred HhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHH-HHHH-hhcCCeEEEEeeehhh
Confidence 9999999999999999999999999999999999999999999999999998775554 4544 7789999999999999
Q ss_pred hhhCCEEEEEeCCEEEEecChhHHHhccccCcccccccchhhhhh----hhh-hhhcccch--hhhhhhhcccc--ccCC
Q 000521 793 ISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQ----KQE-MRTNASSA--NKQILLQEKDV--VSVS 863 (1446)
Q Consensus 793 l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~--~~~~~~~~~~~--~~~~ 863 (1446)
+++||+|++|++|+|+|.|+|+||++.++.+.++....+.....+ +.+ .+....+. ........... ....
T Consensus 551 IrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~ 630 (1228)
T KOG0055|consen 551 IRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLL 630 (1228)
T ss_pred hhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccc
Confidence 999999999999999999999999988877766532221111000 000 00000000 00000000000 0000
Q ss_pred --cchhHHHHHHHHhcCcchhHhHHHHHh--hhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCC---CCcchhh
Q 000521 864 --DDAQEIIEVEQRKEGRVELTVYKNYAK--FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQ---TKYSTSF 936 (1446)
Q Consensus 864 --~~~~~~~~~e~~~~g~v~~~~y~~y~~--~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~---~~~~~~~ 936 (1446)
...++..++...+.. ....++.-++ ...|..+++..+..++..+....-.+.+++..+...... .......
T Consensus 631 ~~~~~~e~~~~~~~~~~--~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~ 708 (1228)
T KOG0055|consen 631 SVKPEGEDPEEPVSEED--EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA 708 (1228)
T ss_pred ccccccccccccccccc--ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 000000000000000 1112333333 125666666666666665555444444444333221111 1122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--CChhHHHHHHHchhhhhccchHHHHH
Q 000521 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILN 1014 (1446)
Q Consensus 937 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~ 1014 (1446)
|..+|++++++..+..++..+++.+.+.+...++|.+++++++++++.|||. +. |.+.+|+++|...+...+...+.
T Consensus 709 ~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~ 787 (1228)
T KOG0055|consen 709 WALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLS 787 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999996 56 99999999999999988888888
Q ss_pred HHHHHHHHHHHhhhhHHhHhHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchhHhHHHHhhcchHHHhhc
Q 000521 1015 ILLANFVGLLGIAVVLSYVQVF---FLLLLVPFWFIYSKLQFFYRS-TSRELRRLDSVSRSPIYASFTETLNGSSTIRAF 1090 (1446)
Q Consensus 1015 ~~~~~~~~~l~~~~~~~~~~~~---~~~~~~pl~~~~~~i~~~y~~-~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf 1090 (1446)
.++.++..++..+++.++..|- +.+++.|++++..+.+..+.. .+++.+....++ .....|++++++||++|
T Consensus 788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea----~~iA~eai~NIrTV~al 863 (1228)
T KOG0055|consen 788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEA----SKIAIEAVSNIRTVAAL 863 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----HHHHHHHHHhHHHHHHH
Confidence 8888877777666665555554 456677887777666665543 344433322222 24678999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHH
Q 000521 1091 KSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1170 (1446)
Q Consensus 1091 ~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1170 (1446)
+.|++|.+.|.+.++...+...+.. .|-++...+-..++...-++...++... ...+..++..+..++.-+..-..
T Consensus 864 ~~e~~~~~~y~~~l~~p~~~~~~~~---~i~gl~f~~sqs~~~~~~A~~f~~G~~L-i~~g~~~~~~~~~vf~~l~~ta~ 939 (1228)
T KOG0055|consen 864 CAEEKFMELYKEELEKPRKSSFKRG---LISGLGFGFSQSLLFFVYALSFWYGARL-ISNGEMTFEDVFRVFMALSFTAM 939 (1228)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HhcCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999888877766543 3444443333333322222222222111 11344556655555544444455
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEE
Q 000521 1171 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQV 1249 (1446)
Q Consensus 1171 ~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~Gekv 1249 (1446)
.+.......++.-++..|+.+++++++.+++-...........+.+|.|+|+||+|+||.. ..+||+|+||+|++||.+
T Consensus 940 ~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTv 1019 (1228)
T KOG0055|consen 940 ALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTV 1019 (1228)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEE
Confidence 6677888889999999999999999988774321111111122468999999999999743 236999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHH
Q 000521 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSV 1328 (1446)
Q Consensus 1250 gIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~a 1328 (1446)
|+||||||||||++.+|.|+|+|.+|.|.|||+||+++++++||++|++|+|||.||++||||||.++. ..+++||.+|
T Consensus 1020 ALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~A 1099 (1228)
T KOG0055|consen 1020 ALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA 1099 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999983 4699999999
Q ss_pred HHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 000521 1329 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406 (1446)
Q Consensus 1329 L~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI 1406 (1446)
++.++.++||.++ ||||.|||+|.+||||||||||||||++|||||||||||||+||.++|+.+|++|++...+||+|
T Consensus 1100 ak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1100 AKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred HHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1407 TIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1407 ~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|||||+||++||.|.|+++|+|+|.|+-..|.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELL 1212 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHHH
Confidence 999999999999999999999999999866543
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-131 Score=1337.74 Aligned_cols=1149 Identities=17% Similarity=0.201 Sum_probs=835.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
+++-..+.+++.++...++.++..++....|+++.++++.+..... ...+++.++++.++..++...+.+...+++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 126 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN---VNDIIFSLVLIGIFQFILSFISSFCMDVVTT 126 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334456667777788888888888899999999987642211 1223344445556666777778888899999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HhhHhHHHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL-LYTQVKFAFVSGLA 422 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~l-L~~~lg~a~l~~~~ 422 (1446)
++...+...+|+|.++++...++....|++.+.++.|++.+...+. .+..+...++.++.++.+ ++....++. +.++
T Consensus 127 ~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lal-v~l~ 205 (1466)
T PTZ00265 127 KILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTL-CITC 205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH
Confidence 9999999999999999999888888889999999999999887653 344555555554443332 222222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1446)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1446)
++.+++.+..++.+++.+..++..+..++..+.+.|.++||++||.|+.|+.+.+++.+..++..+...+.....++...
T Consensus 206 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 206 VFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567788888888888888899999999999999999999999999999887655545544444444444322
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000521 503 FWATT--PTLFSLFTFGLFALMGH--------QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 572 (1446)
Q Consensus 503 ~~~~~--~~~~~~~~f~~~~~~~~--------~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 572 (1446)
+.... ...+.++++|.+.+..+ .++++.+++.+........++..+...+..+..+.+|.+||.+.++.+
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~ 365 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRK 365 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 22222 22345677888877653 588898888765555545566666677889999999999999999764
Q ss_pred CCchhhhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHH
Q 000521 573 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNS 652 (1446)
Q Consensus 573 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~ 652 (1446)
+..+.. . .... .+ ....++++|++|+|+..++ .++|+|+||+|++||+++|+||||||||||+++
T Consensus 366 ~~~~~~-~-~~~~---------~~-~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 366 PLVENN-D-DGKK---------LK-DIKKIQFKNVRFHYDTRKD---VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred CCCCCC-C-CCcc---------CC-CCCcEEEEEEEEEcCCCCC---CceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 322110 0 0000 01 1136999999999975322 346999999999999999999999999999999
Q ss_pred HhcCccCCCcEEEEe-C-------------eEEEEcCCCCCCCccHHHHHhcCCC-------------------------
Q 000521 653 ILGEMMLTHGSIHAS-G-------------SIAYVPQVPWILSGTIRDNILFGKN------------------------- 693 (1446)
Q Consensus 653 llg~~~~~~G~i~~~-~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~------------------------- 693 (1446)
|+|+++|++|+|.++ | +||||+|+|.+|++||+|||.+|..
T Consensus 431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1466)
T PTZ00265 431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK 510 (1466)
T ss_pred HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence 999999999999994 3 4899999999999999999998741
Q ss_pred ---------------------------------CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000521 694 ---------------------------------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740 (1446)
Q Consensus 694 ---------------------------------~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~l 740 (1446)
.++++..++++.+++++.+..+|+|++|.+|++|.+|||||||||+|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI 590 (1466)
T PTZ00265 511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590 (1466)
T ss_pred cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence 23356777888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhhCCEEEEEeCC--------------
Q 000521 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKG-------------- 805 (1446)
Q Consensus 741 ARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G-------------- 805 (1446)
|||++++|+|||||||||+||+++++.+.+. +.... .+|+|+|+||||++.+..||+|++|++|
T Consensus 591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~-L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~ 669 (1466)
T PTZ00265 591 ARAIIRNPKILILDEATSSLDNKSEYLVQKT-INNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGED 669 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccc
Confidence 9999999999999999999999999988876 43311 2479999999999999999999999986
Q ss_pred ---------------------------------EEEEecChhHHHh-ccccCcccccccchhhhhh-----hhhh--hhc
Q 000521 806 ---------------------------------QVKWIGSSADLAV-SLYSGFWSTNEFDTSLHMQ-----KQEM--RTN 844 (1446)
Q Consensus 806 ---------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~-----~~~~--~~~ 844 (1446)
+|+|+|+|+|+++ ..+.+..+.+......... .... ...
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~ 749 (1466)
T PTZ00265 670 PTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS 749 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccc
Confidence 5999999999987 4555544432111000000 0000 000
Q ss_pred c-c-ch-h---hhhhh---hccc------cccCCcch-hHHHHH------HHH--hcCcc--hhHhHHHHHhhhhHHHHH
Q 000521 845 A-S-SA-N---KQILL---QEKD------VVSVSDDA-QEIIEV------EQR--KEGRV--ELTVYKNYAKFSGWFITL 898 (1446)
Q Consensus 845 ~-~-~~-~---~~~~~---~~~~------~~~~~~~~-~~~~~~------e~~--~~g~v--~~~~y~~y~~~~g~~~~~ 898 (1446)
. . .. . ..... .+.. .....++. .+...+ ++. ..... .+..+..+++...+. .+
T Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 828 (1466)
T PTZ00265 750 AYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKD-VT 828 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHH-HH
Confidence 0 0 00 0 00000 0000 00000000 000000 000 00001 111222333222222 22
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhhcccCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 899 VICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 977 (1446)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 977 (1446)
+.++++++..++....++.++.+.+.... .........|.+++++++++..++.++..++..+.+.+...+++.+++++
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ 908 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN 908 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234445555555556666666553211 00111234567777788888888889999999999999999999999999
Q ss_pred HhcCCcccccC--CChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000521 978 IVNAPVLFFDQ--TPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFY 1055 (1446)
Q Consensus 978 vl~~p~~ff~~--~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y 1055 (1446)
+++.|++|||+ +++|++++|+++|++.+...+...+..++..++.+++.++++.+..|.++++++|+.++........
T Consensus 909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~ 988 (1466)
T PTZ00265 909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR 988 (1466)
T ss_pred HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 8899999999999999999888888888888887777777777777777666555443332221111
Q ss_pred HH--HHHHHHHH-------------HHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000521 1056 RS--TSRELRRL-------------DSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1120 (1446)
Q Consensus 1056 ~~--~sr~l~~l-------------~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1446)
.+ ..++.++. +.+..+.....++|+++|++|||+|+.|+++.+++.+..+...+..........+
T Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1466)
T PTZ00265 989 ARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068 (1466)
T ss_pred HHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111111 1222345667899999999999999999999999999998887776655444433
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCC
Q 000521 1121 LSLRLQLLAAFIISFIATMA-VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVP 1199 (1446)
Q Consensus 1121 l~~~l~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~ 1199 (1446)
+....+.+..+...++..+. .+.. .+..+.|.+..++.+.+.....+..+...+.++..+..+.+|+.++++.+
T Consensus 1069 ~~~~~~~~~~~~~~~~~~~G~~lv~-----~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~ 1143 (1466)
T PTZ00265 1069 LWGFSQSAQLFINSFAYWFGSFLIR-----RGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRK 1143 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33333333222211111111 1111 23456666555554444444556778888999999999999999999876
Q ss_pred ccccc-cCCCCC--CCCCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC---
Q 000521 1200 QEELC-GYQSLS--PDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--- 1272 (1446)
Q Consensus 1200 ~e~~~-~~~~~~--~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--- 1272 (1446)
++... .....+ ...+..|.|+|+||+|+|++. ..+||+|+||+|+|||++||||+||||||||+++|+|+|+|
T Consensus 1144 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~ 1223 (1466)
T PTZ00265 1144 SNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKND 1223 (1466)
T ss_pred CcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccc
Confidence 54211 111111 112346889999999999743 24799999999999999999999999999999999999998
Q ss_pred ---------------------------------------------------CCceEEEcCeeCCCCChHhHhcceEEEeC
Q 000521 1273 ---------------------------------------------------CGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1446)
Q Consensus 1273 ---------------------------------------------------~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1301 (1446)
++|+|+|||+||+++++++||++|+||||
T Consensus 1224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Q 1303 (1466)
T PTZ00265 1224 HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQ 1303 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCC
Confidence 69999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1302 SPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1302 dp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
||+||+|||||||.++. +.+|+|+++|++.++++++|.++ ||||.|||+|.+|||||||||||||||+|+|+|||||
T Consensus 1304 ep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1304 EPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999884 47999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeC----CEE-EEEeccchhh
Q 000521 1379 ECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDH----GHL-VCISFICRYF 1439 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~----G~v-vE~~~~~~~~ 1439 (1446)
||||+||++||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|.|+...+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999873 69999999999999999999999999 995 5899977654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-85 Score=786.58 Aligned_cols=545 Identities=26% Similarity=0.355 Sum_probs=441.3
Q ss_pred hHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCC-CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGS-SQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFA 960 (1446)
Q Consensus 882 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~-~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 960 (1446)
+...+.|.+.-.+++...+ ++.++......+.+.++...++.... ............+..++.++.+++..++.+++.
T Consensus 135 ~~rl~~l~~~~~~~l~~a~-~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~ 213 (716)
T KOG0058|consen 135 LKRLLGLLKPEWKWLVAAF-VLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQ 213 (716)
T ss_pred HHHHHHHhchhHHHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556655444444333 23333444455556666554443221 111222333455667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHH--
Q 000521 961 FGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL-- 1038 (1446)
Q Consensus 961 ~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-- 1038 (1446)
+.+.+...++|..+|++++++.++|||.+.+|++++|++.|...+.+.++..+...+.+.+..++.+..+++.+|-+.
T Consensus 214 ~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv 293 (716)
T KOG0058|consen 214 YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLV 293 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998888888887643
Q ss_pred -HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1039 -LLLVPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116 (1446)
Q Consensus 1039 -~~~~pl~-~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~ 1116 (1446)
++.+|++ ++..++.++|++.+++.+. +-+.......|.+.+++|||+|+.|++..++|.+.+++..+...+...
T Consensus 294 ~~i~~P~v~~~~~~yG~~~rklS~~~Q~----a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 294 TLIVVPIVALVAKIYGKYLRKLSKQTQD----ALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 3444556666777766654 334455778899999999999999999999999988887666544433
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 000521 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1446)
Q Consensus 1117 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~ 1196 (1446)
..-.+....++........ ...++.+ ....+.+++|.+...+.|...+...+.++...|.++.+..+|.+|++||+
T Consensus 370 a~~~f~~~~~~~~~~~~~s---iL~~Gg~-Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~ 445 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLS---ILFYGGH-LVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELM 445 (716)
T ss_pred HhhHhHhHHHHHHhHHHHH---HHHhccc-hhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 3322222223332221111 1111111 12346678999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000521 1197 DVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1446)
Q Consensus 1197 ~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1275 (1446)
|.+|.-... ....|. +.+|.|+|+||+|+||.. ..+||||+||+|+|||.||+||||||||||++++|+|+|+|++|
T Consensus 446 dr~P~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 446 DRKPRIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccCCCCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 987753222 111222 568999999999999744 23699999999999999999999999999999999999999999
Q ss_pred eEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCC
Q 000521 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1352 (1446)
Q Consensus 1276 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~ 1352 (1446)
+|++||+||++++.++||++|++|.|||+||+|||||||.++. ..+||||.+|.++++.++||.++ |+||.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 9999999999999999999999999999999999999998875 46899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEE
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCI 1432 (1446)
Q Consensus 1353 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~ 1432 (1446)
+|||||||||||||||+|||+|||||||||+||.|+|..||++|.+..+++|||+|||||+||+.+|+|+|+|+|+|+|.
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccch
Q 000521 1433 SFICR 1437 (1446)
Q Consensus 1433 ~~~~~ 1437 (1446)
|+-..
T Consensus 684 G~h~e 688 (716)
T KOG0058|consen 684 GTHDE 688 (716)
T ss_pred ccHHH
Confidence 96543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-78 Score=753.47 Aligned_cols=529 Identities=27% Similarity=0.382 Sum_probs=443.4
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000521 901 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980 (1446)
Q Consensus 901 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 980 (1446)
++..++.+....+.+++.....|..-.............++++.++...++.+++.+++...+.|....+-.++++++++
T Consensus 160 ~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~ 239 (709)
T COG2274 160 LLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLR 239 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 34555666667777777777766432222223333344556677788889999999999999999999999999999999
Q ss_pred CCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHH----HHHHHHHH
Q 000521 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIY----SKLQFFYR 1056 (1446)
Q Consensus 981 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~----~~i~~~y~ 1056 (1446)
.|++||.+.++|++++|+ +|++.|.+.+.......+..+...+..++++.+.+|.++++.+..++++ ...+.+.+
T Consensus 240 Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~ 318 (709)
T COG2274 240 LPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLR 318 (709)
T ss_pred CcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 5788888888777766666666666666666666665544333333322 33344444
Q ss_pred HHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000521 1057 STSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFI 1136 (1446)
Q Consensus 1057 ~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~ 1136 (1446)
+..++.- +..+...++..|++.|+.|||+.+.|+++..++++..++..+..+.......|.+....++..+....+
T Consensus 319 ~~~~~~~----~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~i 394 (709)
T COG2274 319 RKTRKLI----EESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLI 394 (709)
T ss_pred HHHHHHH----HHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 344455689999999999999999999999999999999999999888888887777666655433332
Q ss_pred HHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCC
Q 000521 1137 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216 (1446)
Q Consensus 1137 ~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~ 1216 (1446)
..+.+... ..+..+.|.+....+....+.+++..++..|+++.....+.+|+.+.++.|+|+..+.. +...|+.+
T Consensus 395 L~~G~~lV----l~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~~ 469 (709)
T COG2274 395 LWFGAILV----LEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKLQ 469 (709)
T ss_pred HHHHHHHH----hcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-cccccccC
Confidence 22222111 13456788888888889999999999999999999999999999999999998643321 34556788
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|.|+|+||+|+|+++.|++|+|+|++|+|||+|||||+||||||||+++|.|+|+|++|+|++||+|+++++++.+|++|
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCcHHHhcCCCCCC-ChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1297 AVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLdp~~~~-~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+|||||++||+||||||+..++.. +|||+++|++.+|++++++++ ||||++||+|.||||||||||+||||++++|+
T Consensus 550 g~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ 629 (709)
T COG2274 550 GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK 629 (709)
T ss_pred eEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC
Confidence 999999999999999999988754 679999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|||+|.|+...+.
T Consensus 630 ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell 695 (709)
T COG2274 630 ILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695 (709)
T ss_pred EEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-74 Score=731.38 Aligned_cols=528 Identities=26% Similarity=0.382 Sum_probs=425.8
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++........++++....+... ........+...++++.++..++.+...+...+.+.+...+++.++++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 98 (567)
T COG1132 21 LLLLLSALLSLLLPLLIGRIIDALL--ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRL 98 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444445555556666665544322 11112233444455555566666777777777778999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|+++|++++.|++++|+++|++.++..+......+...++.+++.++++....|.+.++++....++......+.+..+.
T Consensus 99 ~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
T COG1132 99 PLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRK 178 (567)
T ss_pred CHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887775555545666677777777777766555444444444444444444466
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1446)
..+...++.+.+.+.+.|+++|+++||+|+.++...+++.+..+...+...........+.....++..+....+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
T COG1132 179 LSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGG 258 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777788999999999999999999999998888888777776665544444444433333333322222211111
Q ss_pred HhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEE
Q 000521 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1446)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1446)
... ..+..+.|.+...+.+...+..++..+...+..++....+.+|+.++.+.+++...+... .++..|.|+|
T Consensus 259 ~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~I~f 331 (567)
T COG1132 259 FLV----LSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEF 331 (567)
T ss_pred HHH----HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---CCCCCCeEEE
Confidence 110 123356888999999999999999999999999999999999999999986653211111 3456788999
Q ss_pred EEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeC
Q 000521 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1446)
Q Consensus 1222 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1301 (1446)
+||+|+|++ .+++|+|+||+|+|||++||||||||||||++++|+|+|+|++|+|.|||+||++++.++||++|++|||
T Consensus 332 ~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Q 410 (567)
T COG1132 332 ENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410 (567)
T ss_pred EEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcc
Confidence 999999975 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1302 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1302 dp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
||+||+||||+||+++.+ .+|||+++|++.++++|+++++ |+||.+||+|.+||||||||+|||||++|+|+|||||
T Consensus 411 d~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILD 490 (567)
T COG1132 411 DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILD 490 (567)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999976 6999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||++|++||+.|++.+++..+++|+|+||||++|+++||+|+|||+|+|+|.|++..+.
T Consensus 491 EaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 491 EATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred ccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999888899999999999999999999999999999999998764
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-74 Score=731.26 Aligned_cols=550 Identities=19% Similarity=0.227 Sum_probs=422.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccC-CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTG-SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGS 963 (1446)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 963 (1446)
++.|++...+..+ +.+++.++...+....++.+.+..+... ..........++.+++++.++..++.+++.+.....+
T Consensus 13 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (588)
T PRK11174 13 LKQQSKPAKRWLN-LSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAG 91 (588)
T ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554333322 2233444555555566666666555321 0111111223444555566667777788888888899
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHH
Q 000521 964 LRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVP 1043 (1446)
Q Consensus 964 ~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~p 1043 (1446)
.+...+++.++++++++.|+++|++.++|++++|+++|++.+++.+...+..++..++..++.++++.+.+|.+.++++.
T Consensus 92 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~ 171 (588)
T PRK11174 92 QHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG 171 (588)
T ss_pred HHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888777777777777777777777777765544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000521 1044 FWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSL 1123 (1446)
Q Consensus 1044 l~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~ 1123 (1446)
..++...+...+.+..++..+...+..+.+.+.+.|.++|+++||+|++|+++.+++.+..++..+..........+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK11174 172 TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSA 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444556677889999999999999999999999999999888887776655554444444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCCCCcCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 000521 1124 RLQLLAAFIISFIA-TMAVIGSRGNLPATF----STPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1446)
Q Consensus 1124 ~l~~~~~~~~~~~~-~~~v~~~~~~~~~~~----~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~ 1198 (1446)
...++..+.+.++. ...... .+....+. .+......++.++..+..++..+...+.++..+..+.+|+.++++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 330 (588)
T PRK11174 252 VLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLET 330 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44433332221111 111111 11111111 1122233344566677888999999999999999999999999987
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Q 000521 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1446)
Q Consensus 1199 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1446)
++++..... .+.+.+..+.|+|+||+|.|.++ +++|+|+||+|+|||++||||+||||||||+++|+|+| |++|+|.
T Consensus 331 ~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~ 407 (588)
T PRK11174 331 PLAHPQQGE-KELASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK 407 (588)
T ss_pred CCcccCCCc-cccCCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence 664321111 11111234679999999888654 57999999999999999999999999999999999999 8999999
Q ss_pred EcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCC
Q 000521 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFS 1355 (1446)
Q Consensus 1279 IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LS 1355 (1446)
+||+|+++++.+++|++|+||||||++|+|||||||.+++ +.+|+|+++|++.|+++++++++ |+||.+||+|.+||
T Consensus 408 i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS 487 (588)
T PRK11174 408 INGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487 (588)
T ss_pred ECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCC
Confidence 9999999999999999999999999999999999999885 58999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEecc
Q 000521 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1356 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~ 1435 (1446)
|||||||+||||++++|+|||||||||+||.+|++.|++.|++..+++|+|+||||++++.+||+|+||++|+++|.|+.
T Consensus 488 GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~ 567 (588)
T PRK11174 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDY 567 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCH
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999997
Q ss_pred chhh
Q 000521 1436 CRYF 1439 (1446)
Q Consensus 1436 ~~~~ 1439 (1446)
..+.
T Consensus 568 ~eL~ 571 (588)
T PRK11174 568 AELS 571 (588)
T ss_pred HHHH
Confidence 7653
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-74 Score=741.45 Aligned_cols=530 Identities=25% Similarity=0.353 Sum_probs=427.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 899 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 978 (1446)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 978 (1446)
..+++.++........+++.+...+..............+.+++++.++..++..++.+.+.+.+.+...++++++++++
T Consensus 165 ~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~l 244 (711)
T TIGR00958 165 SAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSL 244 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555666666677777766654321111111222344455556667777788888888999999999999999999
Q ss_pred hcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 979 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058 (1446)
Q Consensus 979 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~ 1058 (1446)
++.|++||+++++|+++||+++|++.+++.+...+..++..++.+++.++++.+.+|.+.++++....+...+.+.+.+.
T Consensus 245 l~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~ 324 (711)
T TIGR00958 245 LRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKR 324 (711)
T ss_pred HcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888888888888877777777776655444444444444444444
Q ss_pred HHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHH
Q 000521 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS---LWLSLRLQLLAAFIISF 1135 (1446)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~---~wl~~~l~~~~~~~~~~ 1135 (1446)
.++..+...+..+...+++.|+++|+++||+|++|+++.+++.+..++..+......... .|....+..+..+++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 404 (711)
T TIGR00958 325 YQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLY 404 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555667789999999999999999999999999999888777665543332 23222222222211111
Q ss_pred HHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCC
Q 000521 1136 IATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPF 1215 (1446)
Q Consensus 1136 ~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~ 1215 (1446)
+....+. .+..+.|.+..++.|...+..++..+...+.++.++..+.+|+.++++.+++...... ..+++.
T Consensus 405 ~g~~lv~-------~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~~~~ 475 (711)
T TIGR00958 405 YGGQLVL-------TGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAPLNL 475 (711)
T ss_pred HHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCCCCC
Confidence 1111111 3456788888899999999999999999999999999999999999987765422111 122456
Q ss_pred CccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhc
Q 000521 1216 QGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1294 (1446)
+|.|+|+||+|+|+++ .+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|+
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 7889999999999753 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1295 RFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+|++|||||++|+|||||||.++. ..+|+++++++++++++++++++ |+||.+||+|.+||||||||+|||||++++
T Consensus 556 ~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~ 635 (711)
T TIGR00958 556 QVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRK 635 (711)
T ss_pred hceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999774 46899999999999999999999 999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|++..+.
T Consensus 636 p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~ 701 (711)
T TIGR00958 636 PRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701 (711)
T ss_pred CCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHH
Confidence 99999999999999999999999 3445799999999999999999999999999999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-73 Score=732.35 Aligned_cols=527 Identities=21% Similarity=0.227 Sum_probs=423.8
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
+..++........++.+....|..-..........+..+++++.++..++.+++.+.....+.+...+++..+++++++.
T Consensus 143 ~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~ 222 (686)
T TIGR03797 143 AMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRL 222 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555566666655553211111111223344556666677788888888899999999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|++||++.++|++++|++ |++.+.+.+...+...+..+...++.++++.+.+|++.++++.+.+++..+.....+..+.
T Consensus 223 ~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~ 301 (686)
T TIGR03797 223 PVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVR 301 (686)
T ss_pred CHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 7888888777666665555555555666666666665554443333333333233322233
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1446)
..+...+..+...+++.|+++|+.|||++|.|+++.+++.+..++..+..+.....+.|.......+..+...++.++..
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556789999999999999999999999999999999998888888777777766555544332222221111
Q ss_pred HhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEE
Q 000521 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1446)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1446)
... ..+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|..... . ...+..|.|+|
T Consensus 382 ~lv----~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~--~~~~~~~~I~~ 454 (686)
T TIGR03797 382 SLL----GGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-T--DPGKLSGAIEV 454 (686)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-C--CCCCCCceEEE
Confidence 110 1244678888888888899999999999999999999999999999998776642211 1 11234678999
Q ss_pred EEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeC
Q 000521 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1446)
Q Consensus 1222 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1301 (1446)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q 534 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQ 534 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEcc
Confidence 99999997666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000521 1302 SPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379 (1446)
Q Consensus 1302 dp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1379 (1446)
||++|+|||||||.++++.+|+++++|++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+||+|||
T Consensus 535 ~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDE 614 (686)
T TIGR03797 535 NGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDE 614 (686)
T ss_pred CCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999988778999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1380 CTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1380 aTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|++..+
T Consensus 615 pTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 615 ATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred CccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999876 6899999999999999999999999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-72 Score=734.36 Aligned_cols=530 Identities=22% Similarity=0.294 Sum_probs=429.8
Q ss_pred HHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000521 903 SAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982 (1446)
Q Consensus 903 ~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p 982 (1446)
+.++..+.....+++.+...|.............++.+++++.++..++.+++.++....+.+...+++.++++++++.|
T Consensus 162 ~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~ 241 (710)
T TIGR03796 162 AGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLP 241 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444555555666666655532111111112233445555666777888888899999999999999999999999999
Q ss_pred cccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSREL 1062 (1446)
Q Consensus 983 ~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l 1062 (1446)
++||++.++|++++|++.| +.+.+.+...+...+..++.+++.++++.+.+|+++++++..++++..+...+.+..+..
T Consensus 242 ~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~ 320 (710)
T TIGR03796 242 VRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDA 320 (710)
T ss_pred HHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 567777776777777777777777777777777766655554444444444444444444
Q ss_pred HHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1063 RRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142 (1446)
Q Consensus 1063 ~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~ 1142 (1446)
.+......+...+++.|+++|+.+||++|+|+.+.+++.+..++..+..+.......|.......+..+...++.++...
T Consensus 321 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~ 400 (710)
T TIGR03796 321 NRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGL 400 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677899999999999999999999999999988888888777766666666655555444322222111111
Q ss_pred hhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccC----C-CCCCCCCCCc
Q 000521 1143 GSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGY----Q-SLSPDWPFQG 1217 (1446)
Q Consensus 1143 ~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~----~-~~~~~wp~~g 1217 (1446)
.. ..+..+.|.+..+..+...+..++..+...+.++.....+.+|+.++++.++|..... . ...+.++..|
T Consensus 401 ~v----~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~ 476 (710)
T TIGR03796 401 RV----MEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSG 476 (710)
T ss_pred HH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCC
Confidence 10 1245678888888899999999999999999999999999999999998877642211 0 0111134568
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 99999999999876678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
||||||++|+|||||||.+++ +.+|++++++++.++++++++++ |+||.+||+|.+|||||||||+||||++++|+|
T Consensus 557 ~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 557 MVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred EEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999998875 47899999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||||+||.+||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+|.|++..+.
T Consensus 637 liLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll 699 (710)
T TIGR03796 637 LILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699 (710)
T ss_pred EEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999987 589999999999999999999999999999999987653
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-72 Score=728.72 Aligned_cols=546 Identities=24% Similarity=0.317 Sum_probs=426.1
Q ss_pred hHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 961 (1446)
Q Consensus 882 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 961 (1446)
+..+..|++...+.. ...++..++..+.....+++++.+.|.............+..+++++.++..++.+++.++...
T Consensus 144 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (708)
T TIGR01193 144 LLKFIPLITRQKKLI-VNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNV 222 (708)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444554333222 2233444555566666778888777643211111112223334455556677788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHH
Q 000521 962 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1041 (1446)
Q Consensus 962 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1041 (1446)
.+.+...+++.++++++++.|++||++.++|++++|++ |.+.+.+.+...+...+..+..++..++++.+.+|.+++++
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 301 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLS 301 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999999999999999998 88877776655555555555555555555666666554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000521 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1121 (1446)
Q Consensus 1042 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1446)
+..++++..+...+.+..++..+...+..+...+++.|+++|+.|||+||.|+++.+++.+..+...+..+.......+.
T Consensus 302 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (708)
T TIGR01193 302 LLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQ 381 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444455556677889999999999999999999999999888887777766655444443
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 000521 1122 SLRLQLLAAF---IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1446)
Q Consensus 1122 ~~~l~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~ 1198 (1446)
.....++..+ ++..++...+. .+..+.|.+..+..+...+..++..+...+.++.....+++|+.++++.
T Consensus 382 ~~~~~~~~~~~~i~il~~g~~lv~-------~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 382 QAIKAVTKLILNVVILWTGAYLVM-------RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333332222 11111111121 3456788888888999999999999999999999999999999999988
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Q 000521 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1446)
Q Consensus 1199 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1446)
++|..... .....++..|.|+|+||+|+|++ .+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|+
T Consensus 455 ~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~ 532 (708)
T TIGR01193 455 DSEFINKK-KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532 (708)
T ss_pred CCcccccc-cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence 77643221 11223455789999999999964 35799999999999999999999999999999999999999999999
Q ss_pred EcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCC--CCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCC
Q 000521 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISF 1354 (1446)
Q Consensus 1279 IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~--~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~L 1354 (1446)
+||+|+++++.+++|++|+||||||++|+|||||||.++ ...+|++++++++.++++++++++ ||||.++|+|.+|
T Consensus 533 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 533 LNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 999999999999999999999999999999999999987 357899999999999999999998 9999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEec
Q 000521 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1355 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~ 1434 (1446)
||||||||+||||++++|+|||||||||+||.+||+.+++.|++ .+++|+|+||||++++..||+|+||++|+++|.|+
T Consensus 613 SgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~-~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~ 691 (708)
T TIGR01193 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGS 691 (708)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH-hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999987 47899999999999999999999999999999999
Q ss_pred cchhh
Q 000521 1435 ICRYF 1439 (1446)
Q Consensus 1435 ~~~~~ 1439 (1446)
+..+.
T Consensus 692 ~~~L~ 696 (708)
T TIGR01193 692 HDELL 696 (708)
T ss_pred HHHHH
Confidence 87653
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-72 Score=724.11 Aligned_cols=531 Identities=23% Similarity=0.306 Sum_probs=424.1
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++..+.....++.++...|.............+..+++++.++..++.+++.++....+.+...+++..+++++++.
T Consensus 154 ~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l 233 (694)
T TIGR03375 154 IASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGL 233 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444555556667777666653211111111222333444455667778888888999999999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|++| ++.++|++++|+ +|++.+.+.+...+...+..++.++..++++.+.+|++.++.+..++++..+...+.+..++
T Consensus 234 ~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 311 (694)
T TIGR03375 234 RMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSR 311 (694)
T ss_pred Cccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 788999999999 79999998887766666666555555556666666665544433333333333333333344
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1446)
..+...+..+...+++.|+++|+++||+|++|+.+.+++.+..++..+..+.....+.+.....+++..+...++..+..
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456667789999999999999999999999999999988887777776665555544444443322211111111
Q ss_pred HhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEE
Q 000521 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1446)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1446)
... ..+..+.|.+..++.+...+..++..+...+.++.....+.+|+.++++.++|...... .....+..|.|+|
T Consensus 392 ~~v----~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~-~~~~~~~~~~I~~ 466 (694)
T TIGR03375 392 YLI----SDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR-FLHRPRLQGEIEF 466 (694)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CCCCCCccceEEE
Confidence 100 12456788888889999999999999999999999999999999999988776422111 1111234678999
Q ss_pred EEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeC
Q 000521 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1446)
Q Consensus 1222 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1301 (1446)
+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||||
T Consensus 467 ~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q 546 (694)
T TIGR03375 467 RNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546 (694)
T ss_pred EEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECC
Confidence 99999997666689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1302 SPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1302 dp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
||++|+|||||||.++++ .+|++++++++.++++++++++ |+||.+||+|.+||||||||++||||++++|+|||||
T Consensus 547 ~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD 626 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626 (694)
T ss_pred ChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999998865 7899999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+++|.|++..+.
T Consensus 627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999988999999999999999999999999999999999987664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-71 Score=709.59 Aligned_cols=530 Identities=23% Similarity=0.336 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 900 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYST--SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTK 977 (1446)
Q Consensus 900 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~--~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~ 977 (1446)
.+++.++........++++....+........... ..++.+++++.++..++.+.+.+.....+.+...+++.+++++
T Consensus 28 ~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (592)
T PRK10790 28 AVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDA 107 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666777777776642111111111 1122234444455666677777788888999999999999999
Q ss_pred HhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 978 IVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRS 1057 (1446)
Q Consensus 978 vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~ 1057 (1446)
+++.|+++|++.+.|++++|+++|++.+++.+...+..++..+..+++.++++.+..|++.++++..+.+...+...+.+
T Consensus 108 l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~ 187 (592)
T PRK10790 108 ALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQR 187 (592)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888888777777777777767666666543332222111122222222
Q ss_pred HHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHH
Q 000521 1058 TSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL-SLRLQLLAAFIISFI 1136 (1446)
Q Consensus 1058 ~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl-~~~l~~~~~~~~~~~ 1136 (1446)
..+...+......+.+..++.|+++|+.+||+||.|+++.+++.+..+...+..+.....+.+. .....++..+...++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (592)
T PRK10790 188 YSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGL 267 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333455667889999999999999999999999999988777666655544433322 222222222211111
Q ss_pred HHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCC
Q 000521 1137 ATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216 (1446)
Q Consensus 1137 ~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~ 1216 (1446)
.+ +.+. ...+..+.|.+..++.+...+..++..+...+.++++...+.+|+.++++.++++.... ..++..
T Consensus 268 ~~--~~~~---~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~ 338 (592)
T PRK10790 268 LM--LFGF---SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND----DRPLQS 338 (592)
T ss_pred HH--HHHH---HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC----ccCCCC
Confidence 11 1111 11345678888888899999999999999999999999999999999998765432111 123345
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++|
T Consensus 339 ~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 789999999999753 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||||||.+|+||||+||.+++..+|++++++++++|++++++.+ |+||.++|+|.+|||||||||+||||++++|+|
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred EEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999999999888999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|++..+.
T Consensus 498 lllDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999987653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-71 Score=690.48 Aligned_cols=543 Identities=23% Similarity=0.279 Sum_probs=470.1
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1446)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 343 (1446)
+-++..++-+++.+....+..++..++.++.|++.+.++|.+-.+.+......+++++.+..++.+++.....|...+++
T Consensus 143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~ 222 (709)
T COG2274 143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLG 222 (709)
T ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667778888889999999999999999999999999987777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 000521 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 421 (1446)
Q Consensus 344 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~ 421 (1446)
.|+...+...+|+|.+++|...++++++|++++.++ |.+.|.+++.. +..+...++-++....|.++ -+.-+++++
T Consensus 223 ~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~y-s~~L~li~l 300 (709)
T COG2274 223 KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVL 300 (709)
T ss_pred HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999999999999999999986 88889886643 33444555555544444444 344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1446)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1446)
+.+++.+.+..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..++++.-.+.++...+.........
T Consensus 301 ~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 380 (709)
T COG2274 301 AAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILN 380 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56666667778888999999999999999999999999999999999999999999999988888888888777766665
Q ss_pred HHHHHHHHH--HHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 000521 502 FFWATTPTL--FSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 579 (1446)
Q Consensus 502 ~~~~~~~~~--~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 579 (1446)
.+......+ +.+++||++.+.++.+|.|.++++.++.+.+..|+..+...+..+.+++++.+|+.+.++.|...+...
T Consensus 381 ~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~ 460 (709)
T COG2274 381 TIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK 460 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 554444333 346899999999999999999999999999999999999999999999999999999998765433111
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000521 580 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~ 659 (1446)
.... .....+.|+++|++|.|..+++ ++|+|+||+|++||.++|||+||||||||+|+|+|.++|
T Consensus 461 ~~~~-----------~~~~~g~I~~~nvsf~y~~~~~----~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 461 TLIH-----------LPKLQGEIEFENVSFRYGPDDP----PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred cccc-----------ccccCceEEEEEEEEEeCCCCc----chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 0000 1235578999999999986532 459999999999999999999999999999999999999
Q ss_pred CCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCCh-hhHHHHHHHhcchHHHhhccCCCcccccC
Q 000521 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISLMVGGDMAYIGE 725 (1446)
Q Consensus 660 ~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~-~~~~~v~~~~~l~~di~~~~~gd~t~ig~ 725 (1446)
.+|+|.+|| +|+||+|++.+|+|||+|||.++.|... |+..++++..+.++++..+|.|++|.+||
T Consensus 526 ~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E 605 (709)
T COG2274 526 QQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605 (709)
T ss_pred CCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccc
Confidence 999999998 5999999999999999999999987644 78888888889999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCC
Q 000521 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 805 (1446)
Q Consensus 726 ~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 805 (1446)
+|.+||||||||++||||++++|+|+||||||||||+++++.|.+++ .. ..+|+|+|+||||++.+++||+|+||++|
T Consensus 606 ~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L-~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~G 683 (709)
T COG2274 606 GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL-LQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQG 683 (709)
T ss_pred CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHH-HH-HhcCCeEEEEEccchHhhhccEEEEccCC
Confidence 99999999999999999999999999999999999999999999984 33 66789999999999999999999999999
Q ss_pred EEEEecChhHHHhccccCcc
Q 000521 806 QVKWIGSSADLAVSLYSGFW 825 (1446)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~ 825 (1446)
+|+++|+++|+++..+.+.+
T Consensus 684 kiv~~gs~~ell~~~g~y~~ 703 (709)
T COG2274 684 KIVEQGSHEELLAQGGLYAR 703 (709)
T ss_pred ceeccCCHHHHHHhcChHHH
Confidence 99999999999987665543
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-71 Score=707.40 Aligned_cols=530 Identities=25% Similarity=0.340 Sum_probs=429.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++...+....+++++.+.+.............+...++++.++..++.+++.+.....+.+....++..+++++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~ 111 (582)
T PRK11176 32 VALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444445556666665553221111111111222334455666677777777778888899999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|.++|++.+.|++++|+++|++.+.+.+...+..++..++.+++.++++.+..|+++++++..+++..++.....+..++
T Consensus 112 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~ 191 (582)
T PRK11176 112 PVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRN 191 (582)
T ss_pred CHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888888887777777777776554444444433333344443344
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1446)
..+......+.+.+++.|.++|+.+||+||.|+.+.+++.+..+...+..........|.....+.+..+...++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 271 (582)
T PRK11176 192 ISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAAS 271 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455667889999999999999999999999999999999998888877777776666666655433222222111
Q ss_pred HhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEE
Q 000521 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1446)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1446)
... ..+..+.|.+..++++...+..++..+...+.++.....+.+|+.++.+.+++...+.. ...|..+.|+|
T Consensus 272 ~~~----~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---~~~~~~~~i~~ 344 (582)
T PRK11176 272 FPS----VMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR---VIERAKGDIEF 344 (582)
T ss_pred HHH----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc---CCCCCCCeEEE
Confidence 110 12456788888888999999999999999999999999999999999987665322111 12244578999
Q ss_pred EEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeC
Q 000521 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1446)
Q Consensus 1222 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1301 (1446)
+||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||
T Consensus 345 ~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 424 (582)
T PRK11176 345 RNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424 (582)
T ss_pred EEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEcc
Confidence 99999998666789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCCCC--CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1302 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1302 dp~lF~gTIR~NLdp~~--~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
||++|+|||||||..+. .++|++++++++.++++++++++ ||||.+||+|.+|||||||||+||||++++|+||||
T Consensus 425 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ilil 504 (582)
T PRK11176 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_pred CceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999998753 47899999999999999999999 999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||||+||++|++.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|++..+
T Consensus 505 DEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999998889999999999999999999999999999999997654
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-71 Score=662.34 Aligned_cols=540 Identities=20% Similarity=0.220 Sum_probs=443.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 346 (1446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~i 346 (1446)
.+.+..||.+..+.++.++.......-|.++.+++|.+.. .+......-....+..++++.+++...+.+.....+.++
T Consensus 140 ~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv 219 (716)
T KOG0058|consen 140 GLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERV 219 (716)
T ss_pred HHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667888888888899999999999999999998876 333222233455666777888999998999999999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhhHhHHHHHHHHHHH
Q 000521 347 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLAIT 424 (1446)
Q Consensus 347 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~pl~i~i~~-~lL~~~lg~a~l~~~~v~ 424 (1446)
-..+...+|++.++...+++++..+|++++.++.|++.+.+.+ .++.+..-+.++...++ +|++....++.+.-+ .+
T Consensus 220 ~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i-~~ 298 (716)
T KOG0058|consen 220 VARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLI-VV 298 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH-Hh
Confidence 9999999999999999999999999999999999999999865 45666666666654443 444444444443322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1446)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1446)
.+.+.+..+++++.++..++.+++..+..+...|.+++||+||+|+.|+...++..+.-++-.+..+|...........+
T Consensus 299 P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~ 378 (716)
T KOG0058|consen 299 PIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGST 378 (716)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHH
Confidence 33344567777888888888888888888999999999999999999998887777655444555544444333333222
Q ss_pred HH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000521 505 AT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1446)
Q Consensus 505 ~~--~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1446)
.. ....++++.+|.|++.++.||++...+++.+-..+..++..+...++.++++..+.+|+.+|++.+..-+... .
T Consensus 379 ~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G--~ 456 (716)
T KOG0058|consen 379 NLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTG--T 456 (716)
T ss_pred HHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCC--c
Confidence 22 2245667889999999999999999999999999999999999999999999999999999997654322110 0
Q ss_pred CCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000521 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G 662 (1446)
..| ....+.|+|+|++|+||.+++ .++|+|+||+|+|||.+|+||||||||||+.++|+.+|+|++|
T Consensus 457 ~~p----------~~~~G~IeF~~VsFaYP~Rp~---~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG 523 (716)
T KOG0058|consen 457 LAP----------DHLQGVIEFEDVSFAYPTRPD---VPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG 523 (716)
T ss_pred ccc----------ccccceEEEEEeeeecCCCCC---chhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 011 134578999999999998654 4569999999999999999999999999999999999999999
Q ss_pred EEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 663 ~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
+|.+|| +||+|.|+|-||++||+|||.+|.+ .++|+..++.+.+..++.|..+|+|++|.|||+|.
T Consensus 524 ~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~ 603 (716)
T KOG0058|consen 524 RILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS 603 (716)
T ss_pred eEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccc
Confidence 999998 5999999999999999999999976 56788999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
.|||||||||||||||+++|.||||||+|||||++++..+- .++.. ..+++|||+|+||++.+++||+|+++++|+++
T Consensus 604 qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq-~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~ 681 (716)
T KOG0058|consen 604 QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQ-EALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVV 681 (716)
T ss_pred cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHH-HHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeEE
Confidence 99999999999999999999999999999999999766554 44544 67789999999999999999999999999999
Q ss_pred EecChhHHHhcc-ccCcc
Q 000521 809 WIGSSADLAVSL-YSGFW 825 (1446)
Q Consensus 809 ~~g~~~~l~~~~-~~~~~ 825 (1446)
|.|+|+|+++.. +.+.+
T Consensus 682 E~G~h~eLl~~~~gly~~ 699 (716)
T KOG0058|consen 682 EMGTHDELLSKPNGLYAK 699 (716)
T ss_pred ecccHHHHhhCcccHHHH
Confidence 999999999876 34433
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=647.88 Aligned_cols=497 Identities=24% Similarity=0.330 Sum_probs=423.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHH
Q 000521 934 TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFIL 1013 (1446)
Q Consensus 934 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l 1013 (1446)
...+++.++++.++..++.+.+.......+.++...+|..+++++.+.+..+-...|+|++....+..++.++..+...+
T Consensus 39 l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryL 118 (559)
T COG4988 39 LLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYL 118 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777788888888888888889999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHhhhhHHhHhH---HHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHhhcchhHhHHHHhhcchHHHh
Q 000521 1014 NILLANFVGLLGIAVVLSYVQV---FFLLLLVPFWFIYSKLQ-FFYR-STSRELRRLDSVSRSPIYASFTETLNGSSTIR 1088 (1446)
Q Consensus 1014 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~pl~~~~~~i~-~~y~-~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIr 1088 (1446)
.....+....+.+++.+.+..| .++++..|++.++..+- ..-. ...++.. +...+-+||.+.++|+.|+|
T Consensus 119 Pq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~-----~~~~ls~~FLD~LrGL~TLr 193 (559)
T COG4988 119 PQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFS-----ALARLSGHFLDRLRGLETLR 193 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHHHHHHHHhcChHHHH
Confidence 8887777766666666665554 45556667766654432 2222 2222332 33456689999999999999
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHH
Q 000521 1089 AFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPI 1168 (1446)
Q Consensus 1089 af~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~ 1168 (1446)
+||..+...++..+..++..+..+....++.--+..+|++..+-+.++++.+.+...+. +..+....-+++..+--+
T Consensus 194 ~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~---G~ltl~~~l~~LiLAPEf 270 (559)
T COG4988 194 AFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGE---GDLTLFAGLFVLILAPEF 270 (559)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---CCccHHHHHHHHHHhHHH
Confidence 99999999999999999999999999888888889999998877766665554433221 233444445556667778
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcE
Q 000521 1169 VSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQ 1248 (1446)
Q Consensus 1169 ~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gek 1248 (1446)
..++..+-..|..-..+..+.+.+..+.+.|.+...........|..+.+++.+|++++|+++. ++++|+||+++|||+
T Consensus 271 f~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~ 349 (559)
T COG4988 271 FQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQL 349 (559)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcE
Confidence 8899999999999999999999999999988765333222233343445677779999998654 899999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCC-CChHHHHH
Q 000521 1249 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWS 1327 (1446)
Q Consensus 1249 vgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~ 1327 (1446)
+||||+||||||||+++|+|+.+|++|+|.+||+|+.+++.+.+|+++++|||+|++|+|||||||.+++. .+|+++++
T Consensus 350 talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~ 429 (559)
T COG4988 350 TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIA 429 (559)
T ss_pred EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 68999999
Q ss_pred HHHHccHHHHHHh-CCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 000521 1328 VLEKCHVKEEVEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406 (1446)
Q Consensus 1328 aL~~~~L~~~i~~-lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI 1406 (1446)
+++++++.++++. .||||.+||+|.+|||||+||++||||++++++++++|||||+||.|||+.|++.|.+.++++|||
T Consensus 430 al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl 509 (559)
T COG4988 430 ALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVL 509 (559)
T ss_pred HHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEE
Confidence 9999999999986 499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1407 TIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1407 ~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++.+.++|+|+|||+|+++|.|.++++.
T Consensus 510 ~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 510 VITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred EEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 999999999999999999999999999999874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-70 Score=698.85 Aligned_cols=530 Identities=25% Similarity=0.362 Sum_probs=446.0
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++..++..+.+++++...+.............+.++++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~ 100 (571)
T TIGR02203 21 VAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGL 100 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455555555666666655543211111112223344566777777888888888999999999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++++.+.+|+++++++.+.++...+...+.+..++
T Consensus 101 ~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~ 180 (571)
T TIGR02203 101 PVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRR 180 (571)
T ss_pred CHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888888888888888888888887776666666656566666665666
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1446)
..+...+..+.+.+.+.|+++|+.+||+++.++++.+++.+..+...+..........+.....+++..+...++.++..
T Consensus 181 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (571)
T TIGR02203 181 ISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIAL 260 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667788889999999999999999999999999999999998888877777777666655555432222222111
Q ss_pred HhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEE
Q 000521 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1446)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1446)
... ..+..++|.+..++.++..+..++..+...+.++.....+.+|+.++++.+++...... +. -+..+.|++
T Consensus 261 ~~~----~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~--~~~~~~i~~ 333 (571)
T TIGR02203 261 FQA----QAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-AI--ERARGDVEF 333 (571)
T ss_pred HHH----HcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-CC--CCCCCeEEE
Confidence 110 13456789999999999999999999999999999999999999999987665422111 11 134578999
Q ss_pred EEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeC
Q 000521 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301 (1446)
Q Consensus 1222 ~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQ 1301 (1446)
+||+|+|+++.+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||||
T Consensus 334 ~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 334 RNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred EEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 99999997655689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHhcCCCC--CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1302 SPFLFEGSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1302 dp~lF~gTIR~NLdp~~--~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
||++|+|||||||..++ +.+|+++++++++++++++++++ ||||.++|+|.+||||||||||||||++++|+|++|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illL 493 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILIL 493 (571)
T ss_pred CcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999875 57999999999999999999998 999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||||+||.+|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|++..+
T Consensus 494 DEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred eCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999998899999999999999999999999999999999987765
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-72 Score=709.43 Aligned_cols=501 Identities=22% Similarity=0.285 Sum_probs=406.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHH
Q 000521 933 STSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI 1012 (1446)
Q Consensus 933 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~ 1012 (1446)
....+...|+.+++...+..++...++.+.+.|...++|.+.++++||++++|||.+..|++..|+++|++.+.+.+...
T Consensus 69 ~~~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geK 148 (1228)
T KOG0055|consen 69 EVSKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEK 148 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHH
Confidence 34556777788888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHhHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhh
Q 000521 1013 LNILLANFVGLLGIAVVLSYVQVFFLLLL---VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRA 1089 (1446)
Q Consensus 1013 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIra 1089 (1446)
+..++..+...++.+++.++..|.+.+++ .|++++...+ +.+..-.....+..+.+.--+...|++.+++|+.+
T Consensus 149 vg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~---~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~a 225 (1228)
T KOG0055|consen 149 VGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGL---LARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYA 225 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 99999888888887777777777665544 4444433322 22221122222222333344678899999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHH
Q 000521 1090 FKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169 (1446)
Q Consensus 1090 f~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~ 1169 (1446)
|+.|++..++|.+.++...|...+.. .|.++.....-.++....+....++.... .....++|.+..++...+.-.
T Consensus 226 f~gq~~e~~ry~~~L~~~~k~gi~~g---~~~G~~~G~~~~~~~~~~a~~~WyG~~li-~~~~~~~g~v~~v~~~vl~g~ 301 (1228)
T KOG0055|consen 226 FNGEKKEIERYSKALENALKFGIKKG---LFKGLGLGFTFFLLFASYALAFWYGSTLI-LNGGYNGGDVITVFFSVLIGG 301 (1228)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCceEEEEEeehhhhh
Confidence 99999999999999988888765542 23333333222222222222222221111 112344555555555555556
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCC-CcccceeeEEEeCCcE
Q 000521 1170 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQ 1248 (1446)
Q Consensus 1170 ~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~-~~vL~~isl~I~~Gek 1248 (1446)
..++.....+..+.++..|..++.+.++..++...........-..+|.|+|+||+|+||... .++|+|+||+|++||.
T Consensus 302 ~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~ 381 (1228)
T KOG0055|consen 302 MSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT 381 (1228)
T ss_pred hhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCE
Confidence 667777778888889999999999998765543211111112223579999999999997542 3799999999999999
Q ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHH
Q 000521 1249 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWS 1327 (1446)
Q Consensus 1249 vgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~ 1327 (1446)
||+||+|||||||++++|.|+|+|++|+|+|||.|+++++.++||++||+|.|||+||++||+|||.++. +.+++|+.+
T Consensus 382 valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~ 461 (1228)
T KOG0055|consen 382 VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEE 461 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 458999999
Q ss_pred HHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEE
Q 000521 1328 VLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1405 (1446)
Q Consensus 1328 aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~Tv 1405 (1446)
|++.++.++++..+ |+||.+||+|.+|||||||||||||||+|+|+||+||||||+||+++|+.+|++|++..+|+|.
T Consensus 462 a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTT 541 (1228)
T KOG0055|consen 462 AAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541 (1228)
T ss_pred HHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeE
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCchhHhhcCEEEEEeCCEEEEEeccchhhh
Q 000521 1406 ITIAHRISTVLNMDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1406 I~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|+|||||+||+++|+|+||++|+|||.|++..+..
T Consensus 542 ivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEEeeehhhhhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999887654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=692.34 Aligned_cols=503 Identities=19% Similarity=0.238 Sum_probs=396.4
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLV--VLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 979 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 979 (1446)
++.++..++....++.+++..+...... .....+.. .++++.++..++.++..+.....+.+...+++.+++++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 97 (529)
T TIGR02868 20 LLGALALGSAVALLGVSAWLISRAAEMP--PVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLA 97 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455555556666665555321111 11111111 1223344556666777777778888999999999999999
Q ss_pred cCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000521 980 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIY-SKLQFFYRST 1058 (1446)
Q Consensus 980 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~-~~i~~~y~~~ 1058 (1446)
+.|.++|++.++|++++|+++|++.+++.+...+..++..++.+++.++++++..|.+.++++..+.++ .....++.+.
T Consensus 98 ~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 177 (529)
T TIGR02868 98 RLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRA 177 (529)
T ss_pred ccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888888887777777777777777777665554433322 2233334444
Q ss_pred HHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000521 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138 (1446)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1138 (1446)
.++..+...+..+.+.+++.|+++|+++||+|++|+.+.+++.+..++..+..........+......++..+...++..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (529)
T TIGR02868 178 ARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALW 257 (529)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556678889999999999999999999999999999988888877666555544444333333322221111
Q ss_pred HHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCC-CCCCCCCCCc
Q 000521 1139 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ-SLSPDWPFQG 1217 (1446)
Q Consensus 1139 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~-~~~~~wp~~g 1217 (1446)
+.... ...+..+.|.+...+.++..+..++..+...+.++.+...+.+|+.++++.++|...... .+...+|..+
T Consensus 258 ~g~~~----~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~ 333 (529)
T TIGR02868 258 AGGPA----VADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKP 333 (529)
T ss_pred HHHHH----HhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCc
Confidence 11110 012345688888888888889999999999999999999999999999987765322111 1112344567
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|++++ .+++|++|+
T Consensus 334 ~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~ 411 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRIS 411 (529)
T ss_pred eEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheE
Confidence 89999999999754 4699999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
||||||++|+|||||||.+++ +.+|+++++|++.++++++++++ |+||.+||+|.+||||||||||||||++++|+|
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999875 46999999999999999999998 999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCc
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRI 1412 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl 1412 (1446)
||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=691.89 Aligned_cols=534 Identities=19% Similarity=0.187 Sum_probs=420.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQ-GSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
++...+.+++.++...++.++..++...+|++++.++|.+.. +.+....+.++++++++.++..++.....+...+.+.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (588)
T PRK11174 13 LKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQ 92 (588)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888888999999999999999999999997642 2222223344555666677788888888888899999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhhHhHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSG 420 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~---lL~~~lg~a~l~~ 420 (1446)
++...+...+|+|.++++...+.+.++|++.|.+++|++++.+... .+..++...+.++++++ .+.+.+++..++
T Consensus 93 ~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~- 171 (588)
T PRK11174 93 HIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLG- 171 (588)
T ss_pred HHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999998889999999999999999998654 45555555554443333 233333433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000521 421 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYL 496 (1446)
Q Consensus 421 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~ 496 (1446)
++++...+..++.++.++..++.++..++..+.+.|.++|+++||.|++|+.+.+++++ .|+.+.+..+.....
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (588)
T PRK11174 172 --TAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLS 249 (588)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333334556778888888999999999999999999999999999999988887744 444444443332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 497 DAWCVFFWATTPTLFSLFTFGLFALMGHQLDA---------AMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTR 567 (1446)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~Lt~---------~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~ 567 (1446)
......+.... . +.++.++.+.+. +.+|. ..+|.++.+...+..|+..++..+..+.++.++.+||.+
T Consensus 250 ~~~~~~~~~~~-~-~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ 326 (588)
T PRK11174 250 SAVLEFFASIS-I-ALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVT 326 (588)
T ss_pred HHHHHHHHHHH-H-HHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111 1 122233334333 33444 345666677788899999999999999999999999999
Q ss_pred HhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHH
Q 000521 568 FLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647 (1446)
Q Consensus 568 fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKS 647 (1446)
+++.++.++.... ...+ ......++++|++|.|+++ +++|+|+||++++|++++|+||||||||
T Consensus 327 ~l~~~~~~~~~~~-~~~~----------~~~~~~i~~~~vsf~~~~~-----~~vL~~i~l~i~~G~~vaIvG~SGsGKS 390 (588)
T PRK11174 327 FLETPLAHPQQGE-KELA----------SNDPVTIEAEDLEILSPDG-----KTLAGPLNFTLPAGQRIALVGPSGAGKT 390 (588)
T ss_pred HHcCCCcccCCCc-cccC----------CCCCceEEEEeeEEeccCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHH
Confidence 9976543211000 0000 0123469999999987632 2459999999999999999999999999
Q ss_pred HHHHHHhcCccCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHh
Q 000521 648 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDIS 713 (1446)
Q Consensus 648 tll~~llg~~~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~ 713 (1446)
||+++|+|++ |++|+|.++| +|+||||+||||++||||||++|++ .++++++++++.|+++++++
T Consensus 391 TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~ 469 (588)
T PRK11174 391 SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLP 469 (588)
T ss_pred HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHH
Confidence 9999999999 9999999987 5999999999999999999999965 89999999999999999999
Q ss_pred hccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh
Q 000521 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 793 (1446)
Q Consensus 714 ~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 793 (1446)
.+|+|++|.+||+|.+|||||||||+||||++++|+|+||||||||||++++++|.+. +.. +.+++|+|+||||++.+
T Consensus 470 ~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~-l~~-~~~~~TvIiItHrl~~i 547 (588)
T PRK11174 470 LLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQA-LNA-ASRRQTTLMVTHQLEDL 547 (588)
T ss_pred hcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEecChHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 444 55789999999999999
Q ss_pred hhCCEEEEEeCCEEEEecChhHHHhccccCc
Q 000521 794 SAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824 (1446)
Q Consensus 794 ~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~ 824 (1446)
+.||+|++|++|+|+++|+++|++++++.+.
T Consensus 548 ~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~ 578 (588)
T PRK11174 548 AQWDQIWVMQDGQIVQQGDYAELSQAGGLFA 578 (588)
T ss_pred HhCCEEEEEeCCeEeecCCHHHHHhcchHHH
Confidence 9999999999999999999999987655443
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-70 Score=689.14 Aligned_cols=492 Identities=21% Similarity=0.285 Sum_probs=401.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHH
Q 000521 941 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANF 1020 (1446)
Q Consensus 941 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~ 1020 (1446)
+.++.++..++.++..+.....+.+...+++.++++++++.|+.+|++.++|++++|+++|++.+++.+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777788889999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHhhhhHHhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHH
Q 000521 1021 VGLLGIAVVLSYVQVFFLLLLVPFWF-IYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099 (1446)
Q Consensus 1021 ~~~l~~~~~~~~~~~~~~~~~~pl~~-~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~ 1099 (1446)
+.+++.++++++.+|.+.++++..+. ++..+..++.+..+...+...++.+.+.+.+.|.++|+++||+||.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 88777777777777776654432222 22222333344444444444556677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000521 1100 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA-APIVSLLGNFLSS 1178 (1446)
Q Consensus 1100 ~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~-~~~~~~l~~~i~~ 1178 (1446)
+.+..++..+..+.......+.....+++..+...++..+..... .+..+.|.+..++.|. ......+..+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-----~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~ 300 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGV-----GGNAQPGALIALFVFAALAAFEALMPVAGA 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777666666555555544433222222211111 1233455544444443 3334566677778
Q ss_pred HHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCC
Q 000521 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAG 1258 (1446)
Q Consensus 1179 ~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSG 1258 (1446)
+.+......+.+|+.++++.++|........ ..+..+.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||
T Consensus 301 ~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsG 378 (574)
T PRK11160 301 FQHLGQVIASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCG 378 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCcccC--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCC
Confidence 8888999999999999998776532111111 12345789999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHH
Q 000521 1259 KSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEE 1337 (1446)
Q Consensus 1259 KSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~ 1337 (1446)
||||+++|.|+++|++|+|.+||+|+++++.+++|++|++|||||++|+|||||||.++. +.+|+++++++++++++++
T Consensus 379 KSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~ 458 (574)
T PRK11160 379 KSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKL 458 (574)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 4689999999999999999
Q ss_pred HHh-CCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q 000521 1338 VEA-VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1416 (1446)
Q Consensus 1338 i~~-lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~ 1416 (1446)
+++ .||||.+||+|.+||||||||++||||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.
T Consensus 459 i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~ 538 (574)
T PRK11160 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE 538 (574)
T ss_pred HcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH
Confidence 885 4999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hcCEEEEEeCCEEEEEeccchhh
Q 000521 1417 NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1417 ~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||+|++|++|+++|.|+...+.
T Consensus 539 ~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 539 QFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999987653
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=700.14 Aligned_cols=528 Identities=23% Similarity=0.319 Sum_probs=422.3
Q ss_pred HHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 000521 904 AILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPV 983 (1446)
Q Consensus 904 ~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~ 983 (1446)
.++........++.++...|..-..........+..+++++.++..++.+++.++....+.+...+++.++++++++.|+
T Consensus 148 s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~ 227 (694)
T TIGR01846 148 SLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPL 227 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33444444555666666555321111111222334455566666778888888999999999999999999999999999
Q ss_pred ccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 984 LFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELR 1063 (1446)
Q Consensus 984 ~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~ 1063 (1446)
+||++.++|++++|+ +|++.+.+.+...+...+..++.++..++++.+.+|.++++++..++++..+.....+..+...
T Consensus 228 ~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~ 306 (694)
T TIGR01846 228 GYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRV 306 (694)
T ss_pred HHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 6999999887766666655555555555566666776655443333333332222222222222
Q ss_pred HHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000521 1064 RLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIG 1143 (1446)
Q Consensus 1064 ~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~ 1143 (1446)
+...+..+...+++.|+++|+.+||+||.|+.+.+++.+..++..+..+.....+.+.....+++..+...++.++....
T Consensus 307 ~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~l 386 (694)
T TIGR01846 307 EDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHL 386 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 22334455677899999999999999999999999999999988888887777666666655555443222221111111
Q ss_pred hcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEE
Q 000521 1144 SRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQN 1223 (1446)
Q Consensus 1144 ~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~n 1223 (1446)
. ..+..+.|.+.....+...+..++..+...+.++++...+.+|+.++++.++|..... .....+..|.|+|+|
T Consensus 387 v----~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--~~~~~~~~~~i~~~~ 460 (694)
T TIGR01846 387 V----IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG--LAALPELRGAITFEN 460 (694)
T ss_pred H----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC--CCCCCCCCCeEEEEE
Confidence 0 1245678888888889999999999999999999999999999999998877642211 111112357899999
Q ss_pred EEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCC
Q 000521 1224 VTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSP 1303 (1446)
Q Consensus 1224 Vs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp 1303 (1446)
|+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|++||+|+++++.+++|+++++|||||
T Consensus 461 vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~ 540 (694)
T TIGR01846 461 IRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN 540 (694)
T ss_pred EEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence 99999876667999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecc
Q 000521 1304 FLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1446)
Q Consensus 1304 ~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEa 1380 (1446)
.+|+|||||||..++ ..+|++++++++.++++++++++ |+||.++++|.+||||||||++||||++++|+|||||||
T Consensus 541 ~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEp 620 (694)
T TIGR01846 541 VLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEA 620 (694)
T ss_pred eehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 999999999998865 46899999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1381 TS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||+||++|++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|++..+
T Consensus 621 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 621 TSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred CcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999998889999999999999999999999999999999987665
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=627.96 Aligned_cols=487 Identities=22% Similarity=0.339 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHH
Q 000521 944 FCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGL 1023 (1446)
Q Consensus 944 l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~ 1023 (1446)
+++...+..++....-.....+.-..+|.++|+++...+..-..+-..|+++||+..|++.+|+.+-..+...+..++..
T Consensus 67 ~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~ 146 (573)
T COG4987 67 LAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLI 146 (573)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHH
Confidence 44455555555555666677888889999999999999999999999999999999999999999999999998888888
Q ss_pred HHhhhhHHhHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHH
Q 000521 1024 LGIAVVLSYVQVFFLLLLVPF-WFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1102 (1446)
Q Consensus 1024 l~~~~~~~~~~~~~~~~~~pl-~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1102 (1446)
+++.+.+++.+|++++.+... ++....+...+.+..|...+.-...+..++++|.|.+.|....+.||.++.|.+.+.+
T Consensus 147 ~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~ 226 (573)
T COG4987 147 AVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226 (573)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH
Confidence 888888888877765544333 3333444445555566666666778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000521 1103 HVVLYQRTSYSELTASLWLSLRLQLLAAFIIS-FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFL-SSFT 1180 (1446)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i-~~~~ 1180 (1446)
..+.+.+...+...+..|-...+.++.++.+. .+...+.... .+..+...+.+++..++.....+.-+. ..+.
T Consensus 227 ~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~-----~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 227 TEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG-----AGALAQPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----CCCcchhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 99999999999999999999988888876554 3333332111 121221122222222233344444444 6668
Q ss_pred HHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCc-cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCH
Q 000521 1181 ETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQG-LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGK 1259 (1446)
Q Consensus 1181 ~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g-~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGK 1259 (1446)
++.+...|++|+.+..+.++|...+.. +-|..+ .++++||+|+|+.+.+++|+|+||++++||||||+|||||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~----~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDE----QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCcc----ccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 888999999999999988776532211 112222 799999999999888899999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHH
Q 000521 1260 SSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEV 1338 (1446)
Q Consensus 1260 STLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i 1338 (1446)
||++++|.|.++|++|+|..+|.|++.++.+++|+.|++++|.+.+|+||+|+||...++ .||||+|++|+++||.+.+
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654 6999999999999999999
Q ss_pred HhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh
Q 000521 1339 EAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1416 (1446)
Q Consensus 1339 ~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~ 1416 (1446)
++. ||+|.+||+|.+||||||||++|||++|++.++++|||||.+||++||+.|.+.|.+..+|+|+|+||||+..+.
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCCEEEEEeccchhh
Q 000521 1417 NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1417 ~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
.||||+|||+|+++|.|++..+.
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhh
Confidence 99999999999999999998653
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-68 Score=681.79 Aligned_cols=533 Identities=24% Similarity=0.355 Sum_probs=422.5
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++........++.+....+..-..........++.+++++.++..++.+++.++....+.+....++..+++++++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 104 (576)
T TIGR02204 25 VALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISL 104 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555556666555443111111111222334444555555666777778888889999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|.++|++...|++++|+++|++.+++.+...+..++..++.+++.++++.+..|++.++++...++...+...+.+..+.
T Consensus 105 ~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~ 184 (576)
T TIGR02204 105 SPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRK 184 (576)
T ss_pred CHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888777777777777777777676666665544333333333333333333344
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAV 1141 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v 1141 (1446)
..+.....+....+++.|.++|+++||+|+.|+++.+++.+..+...+..........|+......+..+...++..+..
T Consensus 185 ~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 264 (576)
T TIGR02204 185 LSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGA 264 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556667789999999999999999999999999999888877776666555555554444333222111111111
Q ss_pred HhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEE
Q 000521 1142 IGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEF 1221 (1446)
Q Consensus 1142 ~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f 1221 (1446)
.. ...+..+.|.+..+..++..+..++..+...+.++.....+.+|+.++++.++|........+..+|..+.|+|
T Consensus 265 ~~----v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (576)
T TIGR02204 265 HD----VIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEF 340 (576)
T ss_pred HH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEE
Confidence 10 01244678888888889999999999999999999999999999999998765421111111122445578999
Q ss_pred EEEEEEecCCC-CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEe
Q 000521 1222 QNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1300 (1446)
Q Consensus 1222 ~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp 1300 (1446)
+||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++|+|
T Consensus 341 ~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~ 420 (576)
T TIGR02204 341 EQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVP 420 (576)
T ss_pred EEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEc
Confidence 99999997543 57999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1301 QSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1301 Qdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
|||++|+|||||||.+++ ..+|++++++++++++.++++.+ |+||.++|+|.+||||||||++||||++++|+||+|
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ilil 500 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLL 500 (576)
T ss_pred cCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 999999999999999865 45889999999999999999998 999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1378 DECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||||+||.+|++.+.+.+++..+++|+|+||||++.+..||+|++|++|+++|.|++..+
T Consensus 501 DEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 501 DEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred eCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHH
Confidence 9999999999999999999998889999999999999999999999999999999998765
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=674.48 Aligned_cols=515 Identities=22% Similarity=0.284 Sum_probs=407.6
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccC-CCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTG-SSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 980 (1446)
++.++..++....++.+++..+... ..........++++++++.++..++.+++.+.....+.+...+++.++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~ 89 (529)
T TIGR02857 10 LLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAA 89 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555566666666555321 111111223345556666777778888888888899999999999999999999
Q ss_pred CCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1060 (1446)
Q Consensus 981 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1060 (1446)
.|..+|++.++|++++|+++|++.+++.+...+..++..++..++.++++.+.+|+++++++....+...+...+.+..+
T Consensus 90 ~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~ 169 (529)
T TIGR02857 90 LGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQ 169 (529)
T ss_pred CCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888777777766666666666666666665444333222222122222222222
Q ss_pred HHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HH
Q 000521 1061 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIA-TM 1139 (1446)
Q Consensus 1061 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~-~~ 1139 (1446)
...+......+.+.+++.|+++|+++||+|+.|+++.+++.+..++..+..........+.....+++..+...++. +.
T Consensus 170 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (529)
T TIGR02857 170 AAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYI 249 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334445677899999999999999999999999999988888877766666666655555554443222211 11
Q ss_pred HHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccE
Q 000521 1140 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1219 (1446)
Q Consensus 1140 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1219 (1446)
..... .+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++++.++++.... +...+..+.|
T Consensus 250 ~~~~~-----~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~~~~~i 321 (529)
T TIGR02857 250 GFRLL-----AGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAAPAPSL 321 (529)
T ss_pred HHHHH-----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCCCCCeE
Confidence 11111 234567877788888888999999999999999999999999999998654322111 1112234689
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++||
T Consensus 322 ~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v 401 (529)
T TIGR02857 322 EFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401 (529)
T ss_pred EEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEE
Confidence 99999999976555799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000521 1300 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1446)
Q Consensus 1300 pQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1376 (1446)
||||++|+|||||||.++. ..+|++++++++.++++++++++ ||||.+||+|.+||||||||++||||++++|+|++
T Consensus 402 ~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ili 481 (529)
T TIGR02857 402 PQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLL 481 (529)
T ss_pred cCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998865 46889999999999999999999 99999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEE
Q 000521 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1424 (1446)
Q Consensus 1377 LDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl 1424 (1446)
||||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 482 lDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 482 LDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999888899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-68 Score=676.38 Aligned_cols=530 Identities=23% Similarity=0.292 Sum_probs=416.1
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000521 900 ICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIV 979 (1446)
Q Consensus 900 ~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl 979 (1446)
+++..++..++....++++....|.... ......++.+++++.++..+..+.......+...+...++..+++++++
T Consensus 24 ~~~~~i~~~~~~~~~~~~~~~iid~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 100 (588)
T PRK13657 24 LAVANVLLAAATFAEPILFGRIIDAISG---KGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERII 100 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666667777766654221 1112222333333333333333333444444555555666779999999
Q ss_pred cCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 980 NAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTS 1059 (1446)
Q Consensus 980 ~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~s 1059 (1446)
+.|..+|++.+.|++++|+++|++.+.+.+...+..++..++..++.++++.+..|+++++++.+++++..+...+.+..
T Consensus 101 ~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~ 180 (588)
T PRK13657 101 QLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKT 180 (588)
T ss_pred hCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877666666666665555566666666777666655555555555556666666
Q ss_pred HHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000521 1060 RELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1139 (1446)
Q Consensus 1060 r~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1139 (1446)
++..+...+..+.+.+++.|+++|+++||+||.++.+.+++.+..+...+........+.+.....+++..+...++.++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (588)
T PRK13657 181 KDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVL 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677888899999999999999999999999999998888887776665555555444443333222221111
Q ss_pred HHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccE
Q 000521 1140 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLI 1219 (1446)
Q Consensus 1140 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I 1219 (1446)
..... ..+..+.|.+..++.++..+..++..+...+.++..+..+.+|+.++.+.+++........+. -+..+.|
T Consensus 261 g~~~v----~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~~~~~I 335 (588)
T PRK13657 261 GAALV----QKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDL-GRVKGAV 335 (588)
T ss_pred HHHHH----HcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCc-CCCCCeE
Confidence 11111 134567888888889999999999999999999999999999999998765442111111111 1234689
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+|+||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||
T Consensus 336 ~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 414 (588)
T PRK13657 336 EFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVV 414 (588)
T ss_pred EEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999743 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000521 1300 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1446)
Q Consensus 1300 pQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1376 (1446)
||||.+|+|||||||..++ +.+|++++++++.++++++++++ |+||.++++|.+||||||||+|||||++++|+|||
T Consensus 415 ~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ili 494 (588)
T PRK13657 415 FQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILI 494 (588)
T ss_pred ecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998875 46899999999999999999998 99999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1377 LDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||||||+||++|++.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|++..+
T Consensus 495 LDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 495 LDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999988789999999999999999999999999999999986554
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-67 Score=682.75 Aligned_cols=537 Identities=21% Similarity=0.254 Sum_probs=443.4
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 264 SLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1446)
Q Consensus 264 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 343 (1446)
.+++..++.+++.++...++.++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888888999999999999999999999998764333344455666666777778888888888999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 000521 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGL 421 (1446)
Q Consensus 344 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~ 421 (1446)
.++...+...+|+|.++++...+.+.+.|++++.++ |++.+.+.... +..+...++-++ ++++++..-++.+++.+
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l 282 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALL-NLGLMFYYSWKLALVAV 282 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888899999999987 78888875532 233344444433 33333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1446)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1446)
+++++.+.+..++.+.+.+..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++..++..+...+......+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (686)
T TIGR03797 283 ALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLT 362 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556677888888899999999999999999999999999999999999988888876666666665555554443
Q ss_pred HHHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 000521 502 FFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 579 (1446)
Q Consensus 502 ~~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 579 (1446)
.+...... .+.++++|.|.+.++.+|.|.++++.+++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 363 ~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 441 (686)
T TIGR03797 363 VFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC-
Confidence 33332222 233466788888888999999999999999999999999999999999999999999999765422110
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000521 580 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~ 659 (1446)
. ..+ ......++++|++|+|+.++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|
T Consensus 442 ~--~~~----------~~~~~~I~~~nvsf~Y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 505 (686)
T TIGR03797 442 K--TDP----------GKLSGAIEVDRVTFRYRPDG----PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP 505 (686)
T ss_pred c--CCC----------CCCCceEEEEEEEEEcCCCC----ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 0 000 11234699999999996431 3469999999999999999999999999999999999999
Q ss_pred CCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000521 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1446)
Q Consensus 660 ~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 726 (1446)
++|+|.++| +||||||+|++|++||||||.+|++.++++..++++.|+++++++.+|+|++|.+||+
T Consensus 506 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 506 ESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred CCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 999999987 5999999999999999999999988899999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 727 g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
|.+|||||||||+||||++++|+|++||||||+||+++++++.+. +.. . ++|+|+||||++.++.||+|++|++|+
T Consensus 586 G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~-L~~-~--~~T~IiItHr~~~i~~~D~Iivl~~G~ 661 (686)
T TIGR03797 586 GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES-LER-L--KVTRIVIAHRLSTIRNADRIYVLDAGR 661 (686)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH-HHH-h--CCeEEEEecChHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999987 333 2 589999999999999999999999999
Q ss_pred EEEecChhHHHhccccC
Q 000521 807 VKWIGSSADLAVSLYSG 823 (1446)
Q Consensus 807 i~~~g~~~~l~~~~~~~ 823 (1446)
|+++|+++|+.++++.+
T Consensus 662 iv~~G~~~~Ll~~~~~y 678 (686)
T TIGR03797 662 VVQQGTYDELMAREGLF 678 (686)
T ss_pred EEEECCHHHHHhCCcHH
Confidence 99999999998765444
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-67 Score=684.23 Aligned_cols=544 Identities=20% Similarity=0.215 Sum_probs=445.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 345 (1446)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 345 (1446)
++..++.+++.++..++..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.+
T Consensus 145 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (710)
T TIGR03796 145 LWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIK 224 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888899999999999999999999876533333344556666667777888888888999999999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000521 346 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAIT 424 (1446)
Q Consensus 346 ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~ 424 (1446)
+...+...+|+|.++++...+.+.++|++++.++.| +.+.+... .+..+....+.+++.+++++..-++.+++.++.+
T Consensus 225 ~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 303 (710)
T TIGR03796 225 LAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFA 303 (710)
T ss_pred HHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988889999999999888 66776543 3444444444444444444443344444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1446)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1446)
++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++...++.+...+......+...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (710)
T TIGR03796 304 AINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLP 383 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556677788888888899999999999999999999999999999999999999988888887776666555444333
Q ss_pred HHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000521 505 ATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1446)
Q Consensus 505 ~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1446)
..... .+.++++|+|.+.++.+|.|.++++.+++..+..|+..++..+..+.++.++++|+.++++.++..+.....
T Consensus 384 ~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~- 462 (710)
T TIGR03796 384 TLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE- 462 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc-
Confidence 22222 234567888888889999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000521 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G 662 (1446)
.+. ............++++|++|+|+..+ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|
T Consensus 463 -~~~---~~~~~~~~~~~~I~~~~vsf~y~~~~----~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 463 -APA---AGSEPSPRLSGYVELRNITFGYSPLE----PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred -ccc---cccccCCCCCCeEEEEEEEEecCCCC----CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 000 00000011235799999999997432 3469999999999999999999999999999999999999999
Q ss_pred EEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCC-CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 663 ~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
+|.++| +|+||||+|++|++||||||.++. +.+++++.++++.++++++++.+|+|++|.+||+|.
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 999987 599999999999999999999875 478899999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
+|||||||||+||||++++|+|+|||||||+||+++++++++.+ .. +++|+|+||||++.++.||+|++|++|+|+
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l-~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~ 690 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNL-RR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVV 690 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHH-Hh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999984 22 479999999999999999999999999999
Q ss_pred EecChhHHHhccccC
Q 000521 809 WIGSSADLAVSLYSG 823 (1446)
Q Consensus 809 ~~g~~~~l~~~~~~~ 823 (1446)
++|+++|+++..+.+
T Consensus 691 ~~G~~~~Ll~~~~~y 705 (710)
T TIGR03796 691 QRGTHEELWAVGGAY 705 (710)
T ss_pred EecCHHHHHHcCCcH
Confidence 999999998765544
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-67 Score=677.48 Aligned_cols=535 Identities=21% Similarity=0.288 Sum_probs=444.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
.++..++.+++.+....++.++..++.++.|++++.++|.+....+....+.++++++++.++..++.....+...+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (694)
T TIGR03375 137 WFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGK 216 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888999999999999999999999987543333334445555666667778888888889999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVALYLLYTQVKFAFVSGLA 422 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~ 422 (1446)
++...+...+|+|.++++... .+.++|++++.+ .|++.+.+.... +..+...++-++..+++++ .-++.+++.++
T Consensus 217 ~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~l~li~l~ 293 (694)
T TIGR03375 217 KADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAI-IGGPLVWVPLV 293 (694)
T ss_pred HHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 999999999999999999887 677899999998 799999986542 2334444444444333333 33334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1446)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1446)
++++.+.+..++.++..+..++.++..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+..........
T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (694)
T TIGR03375 294 AIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATN 373 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556667778889999999999999999999999999999999999999999999999888777777776666555443
Q ss_pred HHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000521 503 FWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1446)
Q Consensus 503 ~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1446)
+...... .+.++++|+|.+.++.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..+....
T Consensus 374 ~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 453 (694)
T TIGR03375 374 FAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTR 453 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence 3333222 23356778888888899999999999999999999999999999999999999999999987543211000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000521 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~ 660 (1446)
... .......|+++|++|+|+.. + +++|+|+||+|++||.++|+|+||||||||+++|+|+++|+
T Consensus 454 ---~~~--------~~~~~~~I~~~~vsf~Y~~~-~---~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~ 518 (694)
T TIGR03375 454 ---FLH--------RPRLQGEIEFRNVSFAYPGQ-E---TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT 518 (694)
T ss_pred ---CCC--------CCCccceEEEEEEEEEeCCC-C---ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 000 01123579999999999642 1 34699999999999999999999999999999999999999
Q ss_pred CcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000521 661 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1446)
Q Consensus 661 ~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 726 (1446)
+|+|.++| .|+||||+|++|++||+|||.++++ .+++++.++++.|+++++++.+|+|++|.+||+
T Consensus 519 ~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 519 EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred CceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 99999987 5999999999999999999999976 789999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 727 g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
|.+||||||||++||||++++|++++||||||+||+++++++.+. +.. ..+++|+|+||||++.++.||+|++|++|+
T Consensus 599 G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~-l~~-~~~~~T~iiItHrl~~~~~~D~iivl~~G~ 676 (694)
T TIGR03375 599 GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR-LKR-WLAGKTLVLVTHRTSLLDLVDRIIVMDNGR 676 (694)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999887 443 456899999999999999999999999999
Q ss_pred EEEecChhHHHhc
Q 000521 807 VKWIGSSADLAVS 819 (1446)
Q Consensus 807 i~~~g~~~~l~~~ 819 (1446)
++++|+++|+++.
T Consensus 677 i~e~G~~~eLl~~ 689 (694)
T TIGR03375 677 IVADGPKDQVLEA 689 (694)
T ss_pred EEeeCCHHHHHHH
Confidence 9999999999764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-70 Score=613.33 Aligned_cols=491 Identities=23% Similarity=0.387 Sum_probs=392.9
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchH
Q 000521 937 YLVVLCIFCMFN------SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLP 1010 (1446)
Q Consensus 937 ~l~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~ 1010 (1446)
....|..+.+++ +++.-+++++......-+.+.+--.+++++.+..+.|.-...+|+++.-..+..+.+. .+.
T Consensus 255 ~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~ 333 (790)
T KOG0056|consen 255 LVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLE 333 (790)
T ss_pred HHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHH
Confidence 344455544433 4566677777778888899999999999999999999999999998887766655554 222
Q ss_pred HHHHHHHHHHHHHHH-hhhhHHhHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcchhHhHHHHhhcchH
Q 000521 1011 FILNILLANFVGLLG-IAVVLSYVQVFFLLLLVPFWFIYSKLQ----FFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1085 (1446)
Q Consensus 1011 ~~l~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~pl~~~~~~i~----~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~ 1085 (1446)
....++.-.+.-+.. .+.......+|+.+++..+..+|..+. .+--+..|.+...+.+++ +.-.+++-+..
T Consensus 334 yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesr----Ar~vDsllNFE 409 (790)
T KOG0056|consen 334 YVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESR----ARQVDSLLNFE 409 (790)
T ss_pred HHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhh----hhhhhhhhcch
Confidence 222222112222222 222223346777777766666554432 122223333333333433 45578999999
Q ss_pred HHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHH
Q 000521 1086 TIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYA 1165 (1446)
Q Consensus 1086 tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~ 1165 (1446)
|+|-|++|++..++|.+.++.+|+..++....-..+...-..+..+......++.++ .......+.|...+..+|.
T Consensus 410 TVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY----~Vt~q~ltVGDfVlf~TYl 485 (790)
T KOG0056|consen 410 TVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAY----RVTEQTLTVGDFVLFLTYL 485 (790)
T ss_pred hhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeee----eeeeccccccceehHHHHH
Confidence 999999999999999999999999988876655555554444433322222222221 1113445678888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeC
Q 000521 1166 APIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEG 1245 (1446)
Q Consensus 1166 ~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~ 1245 (1446)
+++..+++++-..+..++++..-.||+.++++.++|-.+.+..+|- --.+|.|+|+||+|.|+|+ +|||+||||+++|
T Consensus 486 iqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl-~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~p 563 (790)
T KOG0056|consen 486 IQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPL-KVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQP 563 (790)
T ss_pred HHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCc-cccCCeEEEEEeEEecCCC-CceeecceEEecC
Confidence 9999999999999999999999999999999887775433322322 2357999999999999876 5799999999999
Q ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCC-CChHH
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLK 1324 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~-~~d~e 1324 (1446)
|+.+|+|||||+||||++++|+|++|.++|+|.|||+||+++..+.||++||+||||.+||++||..||.+... .+|||
T Consensus 564 GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~Asnee 643 (790)
T KOG0056|consen 564 GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEE 643 (790)
T ss_pred CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764 68999
Q ss_pred HHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC
Q 000521 1325 IWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKG 1402 (1446)
Q Consensus 1325 i~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~ 1402 (1446)
+.+|.+.++++|.|-++ |++|.|||+|..||||||||+|+||++||+|.|++||||||+||..||+.||.++.+..++
T Consensus 644 vyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~ 723 (790)
T KOG0056|consen 644 VYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN 723 (790)
T ss_pred HHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC
Confidence 99999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1403 MTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1403 ~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+|.|+|||||+|+.++|.|+|+++|+|+|.|+-..+
T Consensus 724 RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeL 759 (790)
T KOG0056|consen 724 RTTIVVAHRLSTIVNADLILVISNGRIVERGRHEEL 759 (790)
T ss_pred CceEEEeeeehheecccEEEEEeCCeEeecCcHHHH
Confidence 999999999999999999999999999999987654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-66 Score=672.29 Aligned_cols=535 Identities=19% Similarity=0.191 Sum_probs=423.8
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 270 CCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSS 349 (1446)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~ 349 (1446)
.+.+++.++...++.++..++..+.|++++.++|.+.+..+.......+..++++.++..++.....+...+.+.++...
T Consensus 156 ~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 235 (711)
T TIGR00958 156 SGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLR 235 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777888999999999999999999998864322222222233334444555566655666667778888888
Q ss_pred HHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 000521 350 IMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLI 428 (1446)
Q Consensus 350 L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~ 428 (1446)
+...+|+|.++.+...+++.++|++.|.++.|++.+.+... .+..++...+.+++++++++..-...+++.++.+++..
T Consensus 236 lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~ 315 (711)
T TIGR00958 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315 (711)
T ss_pred HHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88999999999999888888999999999999999987553 45555555555554444333322222333333333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000521 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT- 507 (1446)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~- 507 (1446)
.+..++.++..+..++..+..++..+...|.++|+++||.|++|+.+.+++++..++-.+...+.....+.........
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (711)
T TIGR00958 316 LAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLG 395 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888899999999999999999999999999998887777665444443333333222222221111
Q ss_pred -HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCC
Q 000521 508 -PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 586 (1446)
Q Consensus 508 -~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 586 (1446)
...+.++.+|.|.+.++.+|++.+++++.+...+..|+..++..+..+.++.++.+||.+|++.++..+.... ..+
T Consensus 396 ~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~--~~~- 472 (711)
T TIGR00958 396 MLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGT--LAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--CCC-
Confidence 1223455677888888899999999999999999999999999999999999999999999976543221000 000
Q ss_pred cccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEE
Q 000521 587 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1446)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~ 666 (1446)
.+....|+++|++|+|+..++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 473 ---------~~~~~~I~~~nVsf~Y~~~~~---~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 473 ---------LNLEGLIEFQDVSFSYPNRPD---VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred ---------CCCCCeEEEEEEEEECCCCCC---CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 122356999999999975322 35699999999999999999999999999999999999999999999
Q ss_pred eC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 667 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 667 ~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
+| +|+||||+|++|++||||||.+|.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 87 5999999999999999999999964 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecC
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1446)
|||||++||||++++|+|+|||||||+||+++++.+.+. . ..+++|+|+||||++.++.||+|++|++|+|+++|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~-~---~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES-R---SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHh-h---ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 999999999999999999999999999999999998872 1 346899999999999999999999999999999999
Q ss_pred hhHHHhccccC
Q 000521 813 SADLAVSLYSG 823 (1446)
Q Consensus 813 ~~~l~~~~~~~ 823 (1446)
++|++++++.+
T Consensus 697 ~~eL~~~~~~y 707 (711)
T TIGR00958 697 HKQLMEDQGCY 707 (711)
T ss_pred HHHHHhCCCch
Confidence 99998765544
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=666.70 Aligned_cols=496 Identities=21% Similarity=0.260 Sum_probs=397.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHH
Q 000521 936 FYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNI 1015 (1446)
Q Consensus 936 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~ 1015 (1446)
.|+++++++.++..++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+.......+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~ 116 (569)
T PRK10789 37 MWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLT 116 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555666666776777777889999999999999999999999999999999999999999998666555555
Q ss_pred HHHHHHHHHHhhhhH-HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHH
Q 000521 1016 LLANFVGLLGIAVVL-SYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED 1094 (1446)
Q Consensus 1016 ~~~~~~~~l~~~~~~-~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~ 1094 (1446)
++..++..++.++++ .+..|.+.++++..+.+...+.+.+.+..++..+......+.+.+.+.|+++|+++||+|++|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~ 196 (569)
T PRK10789 117 LVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLED 196 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccH
Confidence 555544444443333 3455544443333333333333334433333333444556778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHH
Q 000521 1095 YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGN 1174 (1446)
Q Consensus 1095 ~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~ 1174 (1446)
.+.+++.+..++..+..+.......+..........+...++..+.... ...+..+.|.+..+..+...+..++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~l----v~~g~lt~g~l~a~~~~~~~~~~pl~~ 272 (569)
T PRK10789 197 RQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWM----VVNGSLTLGQLTSFVMYLGLMIWPMLA 272 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887777666544444433333322221111111111110 012445788888888888889999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECC
Q 000521 1175 FLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGR 1254 (1446)
Q Consensus 1175 ~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGr 1254 (1446)
+...+.++.....+.+|+.++.+.++|........+ +..|.|+|+||+|+|+++.+++|+|+||+|+|||++||+|+
T Consensus 273 l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~ 349 (569)
T PRK10789 273 LAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGP 349 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECC
Confidence 999999999999999999999987654321111111 23568999999999986556799999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHcc
Q 000521 1255 TGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCH 1333 (1446)
Q Consensus 1255 TGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~ 1333 (1446)
||||||||+++|.|+++|++|+|.+||+|+++++.+++|++++++||||++|+||+||||.++. ..+|++++++++.++
T Consensus 350 sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~ 429 (569)
T PRK10789 350 TGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLAS 429 (569)
T ss_pred CCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998874 578999999999999
Q ss_pred HHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q 000521 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411 (1446)
Q Consensus 1334 L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHr 1411 (1446)
+++++.++ |+||.+|++|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|++..+++|+|+||||
T Consensus 430 l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~ 509 (569)
T PRK10789 430 VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHR 509 (569)
T ss_pred CHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 99999988 9999999999999999999999999999999999999999999999999999999988789999999999
Q ss_pred chhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1412 ISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1412 l~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++++..||+|++|++|+++|.|++..+
T Consensus 510 ~~~~~~~d~i~~l~~G~i~~~g~~~~l 536 (569)
T PRK10789 510 LSALTEASEILVMQHGHIAQRGNHDQL 536 (569)
T ss_pred hhHHHcCCEEEEEeCCEEEEecCHHHH
Confidence 999999999999999999999987654
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=609.51 Aligned_cols=491 Identities=23% Similarity=0.354 Sum_probs=383.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHH
Q 000521 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILN 1014 (1446)
Q Consensus 935 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~ 1014 (1446)
..-+..|.+..+...++..++.+.+.+...++-+....+.+++.+...+++|.+..+|.+.+.+.+-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999888887777666665555444
Q ss_pred HHHHHHHHHHHhhhhHHh-HhHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHhhcchhHhHHHHhhcchHHHhh
Q 000521 1015 ILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSKLQ---FFYR-STSRELRRLDSVSRSPIYASFTETLNGSSTIRA 1089 (1446)
Q Consensus 1015 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~pl~~~~~~i~---~~y~-~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIra 1089 (1446)
.++..++.+......+.+ ..+.++++.......|..+. ..++ +--++..+. ....-....|++.+-.+||+
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~A----dn~as~~~~dsL~Nye~VKs 229 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNA----DNSASRRAYDSLINYEIVKS 229 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhh----hhHHHHHHHHHHhhHHHHHH
Confidence 444433333222222222 23333333333333332211 1111 111222222 22233567799999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHH
Q 000521 1090 FKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIV 1169 (1446)
Q Consensus 1090 f~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~ 1169 (1446)
||.|++..++|...+..+.+......+....+.+.-..+.+.... .+.+.+..+ ...+..+.|......+...++.
T Consensus 230 fNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~---~im~l~~~g-i~~~~mtvgdlv~~n~l~~qL~ 305 (591)
T KOG0057|consen 230 FNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT---FIMVLGSNG-IAAGKMTVGDLVMVNSLLFQLS 305 (591)
T ss_pred cccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH---HHHHHHhhh-hhhccccccchhhHHHHHHHHH
Confidence 999999999999999999888766554444433333333222222 222222222 2234556777777788888888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEE
Q 000521 1170 SLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQV 1249 (1446)
Q Consensus 1170 ~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gekv 1249 (1446)
.+++.+-..+.++-.++.-.+-++...+... ..... +.+.-+..|.|+|+||+|+|.|+ +++|+|+||+|++||||
T Consensus 306 ~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~--~i~~~-~~~i~~~~~~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 306 LPLNFLGSVYRELRQALTDMRTLFILLEVDE--DIQEA-ALPIELFGGSIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKV 381 (591)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh--hhhhc-cCCcccCCCcEEEEeeEEEeCCC-CceecceeEEecCCCEE
Confidence 8999998888888887777766654432111 11111 22223446789999999999865 56999999999999999
Q ss_pred EEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCC-CChHHHHHH
Q 000521 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSV 1328 (1446)
Q Consensus 1250 gIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~a 1328 (1446)
||||+|||||||++++|+|+++ ++|+|+|||+||++++++.+|+.||+||||..||++||-+||.+++. .+|||+.++
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~ 460 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEA 460 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999999999998875 599999999
Q ss_pred HHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEE
Q 000521 1329 LEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVI 1406 (1446)
Q Consensus 1329 L~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI 1406 (1446)
+++++++|.+.++ |++|.|||+|..||||||||++||||+||+|+|+++|||||+||.+||+.|.+.|++...|+|+|
T Consensus 461 ~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 461 CKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1407 TIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1407 ~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+|+||++++++||+|++||+|+|+|.|+-..+
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHH
Confidence 99999999999999999999999999986543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-66 Score=658.50 Aligned_cols=528 Identities=21% Similarity=0.275 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000521 901 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980 (1446)
Q Consensus 901 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 980 (1446)
+++.++..++....++.+++..+..... .....++..+++..++..+..++..........+...++++++++++++
T Consensus 25 ~~~~~~~~~~~~~~p~~~~~iid~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~ 101 (585)
T TIGR01192 25 VIANITLAAITIAEPILFGRIIDAISSK---SDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIIS 101 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445555566666677666666532111 1111222222233333333334444444455555666677799999999
Q ss_pred CCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1060 (1446)
Q Consensus 981 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1060 (1446)
.|++||+++++|++++|+++|++.+...+...+...+..++.+++.++++.+.+|.+.++++.+.+++..+.+.+.+..+
T Consensus 102 l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~ 181 (585)
T TIGR01192 102 MPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTK 181 (585)
T ss_pred CCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877777766666666666666666667777666555555555555556666666
Q ss_pred HHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000521 1061 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1140 (1446)
Q Consensus 1061 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1140 (1446)
+..+......+.+.+++.|+++|++|||+||.++.+.+++.+..++..+..+.......+......++..+...++..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 261 (585)
T TIGR01192 182 NGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIG 261 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666777888999999999999999999999999999888877776655444333333322222222111111111
Q ss_pred HHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCC-CCCccE
Q 000521 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW-PFQGLI 1219 (1446)
Q Consensus 1141 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~w-p~~g~I 1219 (1446)
... ...+..+.|.+..++.++..+..++..+...+.++.....+.+|+.++.+.+++...... + ..+ +..+.|
T Consensus 262 ~~~----v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-~-~~~~~~~~~i 335 (585)
T TIGR01192 262 TVL----VIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-A-PELPNVKGAV 335 (585)
T ss_pred HHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc-C-CCCCCCCCeE
Confidence 110 012446788888888888889999999999999999999999999999876554321111 1 112 235689
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+|+||+|+|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+|+.+++.+++|+++++|
T Consensus 336 ~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 336 EFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred EEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 999999999753 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000521 1300 PQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1446)
Q Consensus 1300 pQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1376 (1446)
||||.+|++|+||||.++. ..+|++++++++.+++++++.++ |+||.++++|.+||||||||++||||++++|+|||
T Consensus 415 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ili 494 (585)
T TIGR01192 415 FQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILV 494 (585)
T ss_pred ccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999998874 46889999999999999999888 99999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1377 LDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||||||+||.+|++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+...+
T Consensus 495 lDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred EECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999988889999999999999999999999999999999987655
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-66 Score=669.40 Aligned_cols=535 Identities=21% Similarity=0.244 Sum_probs=434.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 347 (1446)
..++.+++.++...+..++..++.++.|++++.++|.+.........+.++++++++.++..++.....+...+++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (708)
T TIGR01193 149 PLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLS 228 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888889999999999999999999987643333333445555666677778888888888999999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 000521 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-F-HDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425 (1446)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~-~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~ 425 (1446)
..+...+|+|.++++...+++.+.|++++.++ |.+.+.+.... + ..+...++.++..+++++.... .+++.+++++
T Consensus 229 ~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~ 306 (708)
T TIGR01193 229 IDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML-LFLLSLLSIP 306 (708)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence 99999999999999999988899999999998 99998875432 2 2233444444333333333322 2333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 505 (1446)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 505 (1446)
+.+.+..++.++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++...+..+...+..........+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (708)
T TIGR01193 307 VYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKA 386 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677788888999999999999999999999999999999999999888877765555555444444333332222
Q ss_pred HHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcC
Q 000521 506 TTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 583 (1446)
Q Consensus 506 ~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 583 (1446)
... ..+.++++|+|.+.++.+|+|.++++.++...+..|+..+...+..+.+++++.+|+.++++.++..+.....
T Consensus 387 ~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~-- 464 (708)
T TIGR01193 387 VTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR-- 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc--
Confidence 221 2234567888988899999999999999999999999999999999999999999999999765432211000
Q ss_pred CCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE
Q 000521 584 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 663 (1446)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~ 663 (1446)
.+ .......|+++|++|+|+.+ +++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+
T Consensus 465 ~~---------~~~~~~~I~~~~vsf~y~~~-----~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 465 TE---------LNNLNGDIVINDVSYSYGYG-----SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred cC---------CCCCCCcEEEEEEEEEcCCC-----CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 00 01223579999999999632 24699999999999999999999999999999999999999999
Q ss_pred EEEeC-------------eEEEEcCCCCCCCccHHHHHhcCC--CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 664 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 664 i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
|.++| +|+||||+|++|++||||||.+|. +.++++..++++.++++++++.+|+|++|.+||+|.
T Consensus 531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~ 610 (708)
T TIGR01193 531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS 610 (708)
T ss_pred EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence 99987 599999999999999999999983 467889999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
+|||||||||+||||++++|+|+|||||||+||+++++++.+.+ .. . +++|+|+||||++.+..||+|++|++|+++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L-~~-~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~ 687 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL-LN-L-QDKTIIFVAHRLSVAKQSDKIIVLDHGKII 687 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH-HH-h-cCCEEEEEecchHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999874 33 3 689999999999999999999999999999
Q ss_pred EecChhHHHhccccC
Q 000521 809 WIGSSADLAVSLYSG 823 (1446)
Q Consensus 809 ~~g~~~~l~~~~~~~ 823 (1446)
+.|+++|+++..+.+
T Consensus 688 ~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 688 EQGSHDELLDRNGFY 702 (708)
T ss_pred EECCHHHHHhcCCcH
Confidence 999999998765544
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=645.55 Aligned_cols=523 Identities=19% Similarity=0.205 Sum_probs=401.7
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++........++.++...|..-..........++.+++++.++..++.+++.++....+.+...+++.++++++++.
T Consensus 13 ~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 92 (544)
T TIGR01842 13 LFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSA 92 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455555566666665553211111112223444555566667777888888888899999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHH-HHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPF-ILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1060 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1060 (1446)
|+.. .+...+++++|++.+.+.+.. .+..++..++.++.. +++.+..|++.++++...++...+.....+..+
T Consensus 93 ~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~ 166 (544)
T TIGR01842 93 TLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNNRATK 166 (544)
T ss_pred cccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9842 356789999999999876655 344444444433333 345555665544333222222223223333323
Q ss_pred HHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000521 1061 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1140 (1446)
Q Consensus 1061 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1140 (1446)
...+...+..+...+++.|+++|+++||+||.|+.+.+++.+..++..+..+.......+......++..+...++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 246 (544)
T TIGR01842 167 KPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLG 246 (544)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566677899999999999999999999999999988887776665544443333333333222111111111
Q ss_pred HHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEE
Q 000521 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1220 (1446)
Q Consensus 1141 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1220 (1446)
... ...+..++|.+..++.++..+..++..+...+.++.....+.+|+.++++.++|+... ... -+..+.|+
T Consensus 247 ~~l----~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~---~~~~~~i~ 318 (544)
T TIGR01842 247 AYL----AIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MPL---PEPEGHLS 318 (544)
T ss_pred HHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CCC---CCCCCeEE
Confidence 110 0134567888888899999999999999999999999999999999999876653211 111 12356899
Q ss_pred EEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEe
Q 000521 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP 1300 (1446)
Q Consensus 1221 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp 1300 (1446)
++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||+|+.+++.+.+|+++++||
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 398 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLP 398 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEec
Confidence 99999999765567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1301 QSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1301 Qdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
|||++|++|+|||+.++++ .+|++++++++.++++++++++ |+||.++|+|.+||||||||++||||++++|+||||
T Consensus 399 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ilil 478 (544)
T TIGR01842 399 QDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVL 478 (544)
T ss_pred CCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999986654 7899999999999999999999 999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1378 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||||+||.+|++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|++..+
T Consensus 479 DEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 479 DEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred eCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999998875 68999999999999999999999999999999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=647.85 Aligned_cols=538 Identities=18% Similarity=0.202 Sum_probs=430.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 347 (1446)
..++.+++.++..++..++..++..+.|++++.+++.+..+........++.+++++.++..++.....+...+++.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T PRK11176 18 PTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGKVV 97 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777777778888999999999876542222222223333444556666766677777888999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 000521 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITIL 426 (1446)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~ 426 (1446)
..+...+|+|.++++.....+.+.|++++.++.|++.+.+.. ..+..++..++.+++.+.+++..-++.+++.++++++
T Consensus 98 ~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~l 177 (582)
T PRK11176 98 MTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPI 177 (582)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888999999999999999998754 3455566666666555544444333333334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 427 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWAT 506 (1446)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~ 506 (1446)
.+.+..++.+++++..++.++..++..+...|.++|+++||.+|+|+.+.+++++.-++-.+...+..........+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T PRK11176 178 VSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQL 257 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888888888999999999999999999999999999999888888776554444444444333333222222
Q ss_pred HH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCC
Q 000521 507 TP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANS 584 (1446)
Q Consensus 507 ~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~ 584 (1446)
.. ..+.++.++.|.+.++.++++.+.++++++..+..|+..+...+..+.+++.+++|+.++++.++..+....
T Consensus 258 ~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~---- 333 (582)
T PRK11176 258 IASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKR---- 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCc----
Confidence 21 223345667777777899999999999999999999999999999999999999999999976543211000
Q ss_pred CCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEE
Q 000521 585 PSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664 (1446)
Q Consensus 585 ~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i 664 (1446)
. .+.....++++|++|+|++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|
T Consensus 334 ~---------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I 400 (582)
T PRK11176 334 V---------IERAKGDIEFRNVTFTYPGKE----VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 (582)
T ss_pred C---------CCCCCCeEEEEEEEEecCCCC----CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence 0 011234699999999996431 346999999999999999999999999999999999999999999
Q ss_pred EEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC--CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000521 665 HASG-------------SIAYVPQVPWILSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1446)
Q Consensus 665 ~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~--~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 729 (1446)
.++| .|+||||+|++|++||||||.+|++ +++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~ 480 (582)
T PRK11176 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVL 480 (582)
T ss_pred EECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCc
Confidence 9987 5899999999999999999999853 788999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEE
Q 000521 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 809 (1446)
Q Consensus 730 LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~ 809 (1446)
||||||||++||||+|++|+|++|||||||||+++++.+++. +.. +.+++|+|+||||++.++.||+|++|++|++++
T Consensus 481 LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~-l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e 558 (582)
T PRK11176 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVE 558 (582)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999887 433 446799999999999999999999999999999
Q ss_pred ecChhHHHhccccCc
Q 000521 810 IGSSADLAVSLYSGF 824 (1446)
Q Consensus 810 ~g~~~~l~~~~~~~~ 824 (1446)
.|+++++++..+.+.
T Consensus 559 ~g~~~~l~~~~~~y~ 573 (582)
T PRK11176 559 RGTHAELLAQNGVYA 573 (582)
T ss_pred eCCHHHHHhCCChHH
Confidence 999999987665443
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=644.47 Aligned_cols=535 Identities=20% Similarity=0.229 Sum_probs=438.3
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 267 RAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKL 346 (1446)
Q Consensus 267 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~i 346 (1446)
..+++.+++.++...++.++..++...+|++++.+++...........+.+++.++++.++..++.....+...+.+.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 85 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKV 85 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888888899999999999999999999986544332223333344455566667777777778888999999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Q 000521 347 RSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITI 425 (1446)
Q Consensus 347 r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~ 425 (1446)
...+...+|+|.++.+.....+.+.|++.+.++.|++++.+... .+..++...+.+++++.+++..-.+.+++.+++++
T Consensus 86 ~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~ 165 (571)
T TIGR02203 86 VRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLP 165 (571)
T ss_pred HHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999888888999999999999999987654 45555555555554444443333333344444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 426 LLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWA 505 (1446)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~ 505 (1446)
+.+.+..++.++.++..++..+..+++.+.++|.++|+++||.++.|+.+.+++++..++..+...+..........+..
T Consensus 166 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (571)
T TIGR02203 166 VLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQ 245 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566778888888999999999999999999999999999999999998888888766666655554444444333322
Q ss_pred HHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcC
Q 000521 506 TTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAAN 583 (1446)
Q Consensus 506 ~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~ 583 (1446)
.... .+.++.+|.+.+.++.+|++.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+...
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~---- 321 (571)
T TIGR02203 246 LIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT---- 321 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC----
Confidence 2222 2345667778888889999999999999999999999999999999999999999999997654322100
Q ss_pred CCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcE
Q 000521 584 SPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGS 663 (1446)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~ 663 (1446)
.+. +..+..++++|++|+|++.+ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+
T Consensus 322 ~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 322 RAI---------ERARGDVEFRNVTFRYPGRD----RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred CCC---------CCCCCeEEEEEEEEEcCCCC----CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 000 11234699999999996432 34699999999999999999999999999999999999999999
Q ss_pred EEEeC-------------eEEEEcCCCCCCCccHHHHHhcCC--CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 664 IHASG-------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 664 i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~--~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
|.++| .|+||||+|++|++|+||||.++. +.++++.+++++.|++++++..+|+|.+|.+|++|.
T Consensus 389 I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~ 468 (571)
T TIGR02203 389 ILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGV 468 (571)
T ss_pred EEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCC
Confidence 99987 499999999999999999999985 488999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
+||||||||++||||++++|+|++||||||+||+++++++.+. +.. ..+++|+|+|||+.+.+..||+|++|++|+++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~-L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~ 546 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAA-LER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIV 546 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999887 433 45689999999999999999999999999999
Q ss_pred EecChhHHHhcc
Q 000521 809 WIGSSADLAVSL 820 (1446)
Q Consensus 809 ~~g~~~~l~~~~ 820 (1446)
+.|+++++.+..
T Consensus 547 ~~g~~~~l~~~~ 558 (571)
T TIGR02203 547 ERGTHNELLARN 558 (571)
T ss_pred eeCCHHHHHHcC
Confidence 999999997653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=618.96 Aligned_cols=463 Identities=26% Similarity=0.368 Sum_probs=346.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC----CcEEEEeC--------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT----HGSIHASG-------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~----~G~i~~~~-------- 668 (1446)
.++++|.+..|.... .+ ..+++||||++.+||.++|||.|||||||+.++|+|..++. +|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~-~~-~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATDG-GR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecCC-cc-eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 578899998887652 22 35799999999999999999999999999999999999987 89998876
Q ss_pred ---------eEEEEcCCCC-CCCc--cHHHHHh----cCCCC----ChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 669 ---------SIAYVPQVPW-ILSG--TIRDNIL----FGKNY----DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 669 ---------~i~yv~Q~p~-l~~~--ti~~nI~----~g~~~----~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
.|||++|+|+ .+|. ||.+-|. ..... ..++..+.++..+|.+.... .....
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPh 153 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPH 153 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCc
Confidence 4999999996 5554 7776664 22222 12334445555666443221 45677
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 807 (1446)
.|||||||||.||+||..+|+++|+||||+|||+.++.+|++.+.......|.++|+|||++..+.+ ||+|+||.+|++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999986332223457799999999999876 999999999999
Q ss_pred EEecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHH
Q 000521 808 KWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKN 887 (1446)
Q Consensus 808 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~ 887 (1446)
+|.|+.+++..+...-
T Consensus 234 VE~G~~~~i~~~p~hp---------------------------------------------------------------- 249 (539)
T COG1123 234 VETGPTEEILSNPQHP---------------------------------------------------------------- 249 (539)
T ss_pred EEecCHHHHHhccCCc----------------------------------------------------------------
Confidence 9999999886432100
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 888 YAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAA 967 (1446)
Q Consensus 888 y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 967 (1446)
|-+. + |.. .+....
T Consensus 250 YT~~----------L------------------l~a-----~p~~~~--------------------------------- 263 (539)
T COG1123 250 YTRG----------L------------------LAA-----VPRLGD--------------------------------- 263 (539)
T ss_pred ccHH----------H------------------Hhh-----CCCccc---------------------------------
Confidence 0000 0 000 000000
Q ss_pred HHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHH
Q 000521 968 VKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFI 1047 (1446)
Q Consensus 968 ~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~ 1047 (1446)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000521 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQL 1127 (1446)
Q Consensus 1048 ~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~ 1127 (1446)
T Consensus 264 -------------------------------------------------------------------------------- 263 (539)
T COG1123 264 -------------------------------------------------------------------------------- 263 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCC
Q 000521 1128 LAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQ 1207 (1446)
Q Consensus 1128 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~ 1207 (1446)
. ... ..+.+
T Consensus 264 -------------------~-~~~---------------------------------------------~~~~~------ 272 (539)
T COG1123 264 -------------------E-KII---------------------------------------------RLPRR------ 272 (539)
T ss_pred -------------------c-ccc---------------------------------------------ccccc------
Confidence 0 000 00000
Q ss_pred CCCCCCCCCccEEEEEEEEEecCC---------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Q 000521 1208 SLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1446)
Q Consensus 1208 ~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1446)
.+. +....++++|++.+|... ...+++||||++++||.+||||.||||||||.++|+|+++|++|+|.
T Consensus 273 ~~~---~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~ 349 (539)
T COG1123 273 GPL---RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSII 349 (539)
T ss_pred ccc---ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 000 012358899999999741 24689999999999999999999999999999999999999999999
Q ss_pred EcCee--CCCCChHhHhcceEEEeCCCCC--C-CCcHHHhcC-CCCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCC
Q 000521 1279 VDGLN--IINTPVRDLRGRFAVVPQSPFL--F-EGSLRDNLD-PFHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESG 1351 (1446)
Q Consensus 1279 IDG~d--i~~i~~~~lR~~i~~VpQdp~l--F-~gTIR~NLd-p~~~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G 1351 (1446)
+||.| .+.-....+|+++-+|.|||+- - ..||+++|. |...+.... .+-.+..+.+.++..||.. ......
T Consensus 350 ~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~VgL~~~~l~ryP 427 (539)
T COG1123 350 FDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELVGLPPEFLDRYP 427 (539)
T ss_pred EeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHcCCCHHHHhcCc
Confidence 99977 3333455688899999999973 3 259999984 322111100 0111112222233335665 355667
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCE
Q 000521 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1428 (1446)
Q Consensus 1352 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1428 (1446)
..||||||||+||||||..+|++||+|||||+||+-+...|.+.|.+.-+ +.|.|+|||+++.++. ||||+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 78999999999999999999999999999999999999999998876543 7999999999999986 99999999999
Q ss_pred EEEEeccchhhh
Q 000521 1429 LVCISFICRYFI 1440 (1446)
Q Consensus 1429 vvE~~~~~~~~~ 1440 (1446)
|||.|.....|.
T Consensus 508 iVE~G~~~~v~~ 519 (539)
T COG1123 508 IVEEGPTEKVFE 519 (539)
T ss_pred EEEeCCHHHHhc
Confidence 999997766654
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=637.73 Aligned_cols=532 Identities=19% Similarity=0.230 Sum_probs=415.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLD--GYVLAIALGLTSILKSFFDTQYSFHLSKLKLK 345 (1446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~--g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ 345 (1446)
...+.+++.++...++.++..++..+.|+++..++|.+..+.+... ...+++++++..++..++.....+...+.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (592)
T PRK10790 16 AYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVG 95 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888899999999999999999997654222111 12223334445556667777777888899999
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH-H--HhhHhHHHHHHHH
Q 000521 346 LRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALY-L--LYTQVKFAFVSGL 421 (1446)
Q Consensus 346 ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~i~~~-l--L~~~lg~a~l~~~ 421 (1446)
+...+...+|+|.++.+...+.+.+.|+++|.++.|++++.+.... +..+....+.+++++. + +.+.+++..+++
T Consensus 96 ~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~- 174 (592)
T PRK10790 96 VVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMI- 174 (592)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999998888889999999999999999875543 3333333333333322 2 222333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000521 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC- 500 (1446)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~- 500 (1446)
+++.+.+..+..++..+..++..+..++..+...|.++|+++||.|+.|+.+.+++.+..++..+...+.....+..
T Consensus 175 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (592)
T PRK10790 175 --FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLL 252 (592)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344555666677777778888888899999999999999999999999888876655444433322222211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000521 501 ---VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1446)
Q Consensus 501 ---~~~~~~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1446)
..+......+..++.+ .+ +..+.++.+.+++++.++..+..|+..++..+..+.++..+.+||.++++.++.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~-~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 253 RPLLSLFSALILCGLLMLF-GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 1111111111112222 23 356789999999999999999999999999999999999999999999975432111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000521 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~ 657 (1446)
.. .. ......++++|++|+|+.+ +++|+|+||++++||.++|+|+||||||||+++|+|++
T Consensus 331 ~~---~~-----------~~~~~~i~~~~v~f~y~~~-----~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~ 391 (592)
T PRK10790 331 ND---DR-----------PLQSGRIDIDNVSFAYRDD-----NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY 391 (592)
T ss_pred CC---cc-----------CCCCCeEEEEEEEEEeCCC-----CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 00 00 1123469999999999632 23599999999999999999999999999999999999
Q ss_pred cCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCccccc
Q 000521 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724 (1446)
Q Consensus 658 ~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig 724 (1446)
+|++|+|.++| +|+||||+|++|++||||||.+|++.++++..+++++++++++++.+|+|++|.+|
T Consensus 392 ~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 392 PLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99999999987 49999999999999999999999888999999999999999999999999999999
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeC
Q 000521 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804 (1446)
Q Consensus 725 ~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1446)
++|.+||||||||++||||++++|+|++||||||+||++++++|.+. +.. +.+++|+|+||||++.++.||+|++|++
T Consensus 472 e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~-l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~ 549 (592)
T PRK10790 472 EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA-LAA-VREHTTLVVIAHRLSTIVEADTILVLHR 549 (592)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999887 433 4567999999999999999999999999
Q ss_pred CEEEEecChhHHHhccccCcc
Q 000521 805 GQVKWIGSSADLAVSLYSGFW 825 (1446)
Q Consensus 805 G~i~~~g~~~~l~~~~~~~~~ 825 (1446)
|++++.|+++|+++..+.+..
T Consensus 550 G~i~~~G~~~~L~~~~~~y~~ 570 (592)
T PRK10790 550 GQAVEQGTHQQLLAAQGRYWQ 570 (592)
T ss_pred CEEEEEcCHHHHHhCCCHHHH
Confidence 999999999999876554443
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-64 Score=630.16 Aligned_cols=504 Identities=20% Similarity=0.192 Sum_probs=392.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 347 (1446)
.+.+.+++.++...++.++..++..+.|++++.++|.+.........+.+.++++++.++..++.....+...+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 6 PLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777778888899999999999999999876532221111111222223445566666667777788999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHhhHhHHHHHHHHHH
Q 000521 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALY---LLYTQVKFAFVSGLAI 423 (1446)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~i~~~---lL~~~lg~a~l~~~~v 423 (1446)
..+...+|+|.++++...+.+.++|+++|.++.|++++.+.... +..+....+.+++++. .+.+.+++.++++++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~- 164 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL- 164 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-
Confidence 99999999999999999998999999999999999999986553 3444444444333333 233334433333322
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 424 TILLIPVNKWI-ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1446)
Q Consensus 424 ~~~~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1446)
++..+..++ .+..++..++..+..++..+...|.++|+++||.+++|+.+.+++++..++..+...+.....+....
T Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (529)
T TIGR02868 165 --LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAA 242 (529)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233 34345556777788899999999999999999999999999999988776666665555555444433
Q ss_pred HHHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000521 503 FWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1446)
Q Consensus 503 ~~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1446)
+..... ..+.++++|.|.+.++.++++.+.+.+.+...+..|+..++..+..+.++.++.+|+.++++.++..+....
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 322 (529)
T TIGR02868 243 AQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV 322 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC
Confidence 332222 223345677787888899999999999999999999999999999999999999999999976543211000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000521 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~ 660 (1446)
..+. ........++++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+
T Consensus 323 --~~~~-------~~~~~~~~I~~~~vsf~Y~~~-----~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 388 (529)
T TIGR02868 323 --PAAG-------ALGLGKPTLELRDLSFGYPGS-----PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL 388 (529)
T ss_pred --CCCc-------ccCCCCceEEEEEEEEecCCC-----CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 0000 001123469999999999642 23699999999999999999999999999999999999999
Q ss_pred CcEEEEeC------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000521 661 HGSIHASG------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1446)
Q Consensus 661 ~G~i~~~~------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 727 (1446)
+|+|.++| +||||||+|++|++||||||.+|.+ .++++++++++.|+++++++.+|+|++|.+||+|
T Consensus 389 ~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 468 (529)
T TIGR02868 389 QGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGG 468 (529)
T ss_pred CcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhcccc
Confidence 99999998 7999999999999999999999865 6889999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCc
Q 000521 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790 (1446)
Q Consensus 728 ~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~ 790 (1446)
.+||||||||++||||++++|+|++||||||+||+++++.|.+.+ .. ..+++|+|+||||+
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l-~~-~~~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDL-LA-ALSGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HH-hcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999884 33 56789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=635.62 Aligned_cols=541 Identities=18% Similarity=0.219 Sum_probs=425.4
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
.++.+++.+++.++...++.++..++.++.|+++..+++.+-.+.+......+++.++++.++..++...+.+...+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGE 87 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888889999999999999999999974322222222223333444445555666667788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhhHhHHHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL-YLLYTQVKFAFVSGLA 422 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~-~lL~~~lg~a~l~~~~ 422 (1446)
++...+...+|+|.++.+.....+.+.|++.+.++.|++.+.+... .+..++...+.+++++ ++++....++.++.+
T Consensus 88 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~- 166 (576)
T TIGR02204 88 RVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL- 166 (576)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-
Confidence 9999999999999999999888888899999999999999987653 3444444444433332 233232222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 423 ITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502 (1446)
Q Consensus 423 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 502 (1446)
.+++.+.+..++.+++++..+++++..++..+...|.++|+++||.+++|+.+.+++++..++..+...+......+...
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334456788888889999999999999999999999999999999998888888766555554444433333222
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000521 503 FWATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1446)
Q Consensus 503 ~~~~~--~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1446)
+.... ...+.++.+|.|.+..+.+|++.++++..+...+..|+..++..+..+.+++.+++||.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 22111 2233455677888888899999999999999999999999999999999999999999999976432111000
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000521 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~ 660 (1446)
. ...+ ......++++|++|+|+.+++ +++|+|+||+++|||.++|+|+||||||||+++|+|+++|.
T Consensus 327 ~-~~~~---------~~~~~~i~~~~v~f~y~~~~~---~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~ 393 (576)
T TIGR02204 327 P-KTLP---------VPLRGEIEFEQVNFAYPARPD---QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ 393 (576)
T ss_pred C-ccCC---------cCCCceEEEEEEEEECCCCCC---CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 0 0000 012346999999999975322 34699999999999999999999999999999999999999
Q ss_pred CcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000521 661 HGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1446)
Q Consensus 661 ~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 726 (1446)
+|+|.++| .++||||+|++|++||||||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++
T Consensus 394 ~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~ 473 (576)
T TIGR02204 394 SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473 (576)
T ss_pred CCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCC
Confidence 99999987 5999999999999999999999875 577889999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 727 g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
|.+||||||||++||||++++|++++||||||+||+++++.+++. +.. ..+++|+|+|||+++.++.+|+|++|++|+
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~-l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~ 551 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA-LET-LMKGRTTLIIAHRLATVLKADRIVVMDQGR 551 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHH-HHH-HhCCCEEEEEecchHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999988876 443 456899999999999999999999999999
Q ss_pred EEEecChhHHHhccc
Q 000521 807 VKWIGSSADLAVSLY 821 (1446)
Q Consensus 807 i~~~g~~~~l~~~~~ 821 (1446)
+++.|+++++.++.+
T Consensus 552 ~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 552 IVAQGTHAELIAKGG 566 (576)
T ss_pred EEeeecHHHHHHcCC
Confidence 999999999876543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=641.35 Aligned_cols=541 Identities=19% Similarity=0.214 Sum_probs=438.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
.++..++.+++.+...++..++..++.++.|++++.++|.+-...+....+.++++++++.++..++.....+...+++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (694)
T TIGR01846 129 WFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTS 208 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777788888899999999999999999999987543333344455566666677788888888899999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 423 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v 423 (1446)
++...+...+|+|.++++...+.+.++|++++.+ .|++.+.+... .+..+....+.+++.+.+++..-++.+++.+++
T Consensus 209 ~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 287 (694)
T TIGR01846 209 RIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGS 287 (694)
T ss_pred HHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 59999988653 333333222222222323333222333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 424 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF 503 (1446)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~ 503 (1446)
+++.+.+..++.+++++..++.++..+++.+.+.|.++|+++||.+|.|+.+.+++++.-++..+...+..........+
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (694)
T TIGR01846 288 LVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQA 367 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556677788888888889999999999999999999999999999999988887666666655555554444333
Q ss_pred HHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhh
Q 000521 504 WATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQA 581 (1446)
Q Consensus 504 ~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~ 581 (1446)
..... ..+.++++|+|.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++..+.. .
T Consensus 368 ~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~- 445 (694)
T TIGR01846 368 IELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-G- 445 (694)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-C-
Confidence 22222 2233567888888888999999999999999999999999999999999999999999999765432110 0
Q ss_pred cCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCC
Q 000521 582 ANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 661 (1446)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~ 661 (1446)
... .+..+..++++|++|+|+++. +++|+|+||++++||.++|+|+||||||||+++|+|+++|++
T Consensus 446 --~~~--------~~~~~~~i~~~~vsf~y~~~~----~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~ 511 (694)
T TIGR01846 446 --LAA--------LPELRGAITFENIRFRYAPDS----PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511 (694)
T ss_pred --CCC--------CCCCCCeEEEEEEEEEcCCCC----ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 000 012235799999999996431 235999999999999999999999999999999999999999
Q ss_pred cEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000521 662 GSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1446)
Q Consensus 662 G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 727 (1446)
|+|.++| .|+||+|+|++|++||+|||.++.+ .++++..++++.++++++++.+|+|.+|.+|++|
T Consensus 512 G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g 591 (694)
T TIGR01846 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKG 591 (694)
T ss_pred ceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCC
Confidence 9999987 4899999999999999999999764 6788899999999999999999999999999999
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEE
Q 000521 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1446)
Q Consensus 728 ~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1446)
.+||||||||++||||++++|+++|||||||+||+++++++.+. +.. ..+++|+|++|||++.++.||+|++|++|++
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i 669 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRN-MRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHH-HHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999987 333 4568999999999999999999999999999
Q ss_pred EEecChhHHHhccccCc
Q 000521 808 KWIGSSADLAVSLYSGF 824 (1446)
Q Consensus 808 ~~~g~~~~l~~~~~~~~ 824 (1446)
+++|+++++++..+.+.
T Consensus 670 ~~~g~~~~l~~~~~~y~ 686 (694)
T TIGR01846 670 AESGRHEELLALQGLYA 686 (694)
T ss_pred EEeCCHHHHHHcCChHH
Confidence 99999999987655443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=649.21 Aligned_cols=480 Identities=22% Similarity=0.291 Sum_probs=346.4
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------- 668 (1446)
+..++++|++++|..... ..++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 10 ~~~l~v~~l~~~y~~~~~--~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~ 87 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQ--KIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQV 87 (623)
T ss_pred CceEEEeceEEEecCCCC--ceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccc
Confidence 346899999999963211 12469999999999999999999999999999999999999999987643
Q ss_pred -----------------eEEEEcCCC--CCCC-ccHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCc
Q 000521 669 -----------------SIAYVPQVP--WILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDM 720 (1446)
Q Consensus 669 -----------------~i~yv~Q~p--~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~ 720 (1446)
.||||+|+| .++. .||+|||.++. ..+. ++..++++..++... .
T Consensus 88 ~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~ 159 (623)
T PRK10261 88 IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------Q 159 (623)
T ss_pred cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------h
Confidence 489999998 4654 59999998752 1222 234445555555310 1
Q ss_pred ccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCE
Q 000521 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADM 798 (1446)
Q Consensus 721 t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~ 798 (1446)
........+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+. +.... ..|+|+|+|||+++.+.. ||+
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l-l~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL-IKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 123456678999999999999999999999999999999999999988875 33311 237899999999998765 999
Q ss_pred EEEEeCCEEEEecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcC
Q 000521 799 VVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEG 878 (1446)
Q Consensus 799 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 878 (1446)
|++|++|++++.|+++++...... . . ..
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~~~~------~--------------------~---------------~~----------- 266 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHAPQH------P--------------------Y---------------TR----------- 266 (623)
T ss_pred EEEeeCCeecccCCHHHhhcCCCC------h--------------------h---------------hh-----------
Confidence 999999999988887765321000 0 0 00
Q ss_pred cchhHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000521 879 RVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 958 (1446)
Q Consensus 879 ~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 958 (1446)
.++.. .+. +..+.
T Consensus 267 --------~l~~~---------------------~~~--~~~~~------------------------------------ 279 (623)
T PRK10261 267 --------ALLAA---------------------VPQ--LGAMK------------------------------------ 279 (623)
T ss_pred --------hhhhc---------------------cCc--ccccc------------------------------------
Confidence 00000 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHH
Q 000521 959 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1038 (1446)
Q Consensus 959 ~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 1038 (1446)
|+ .++
T Consensus 280 ---------------------------------~~--------------~~~---------------------------- 284 (623)
T PRK10261 280 ---------------------------------GL--------------DYP---------------------------- 284 (623)
T ss_pred ---------------------------------cc--------------cCC----------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1039 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118 (1446)
Q Consensus 1039 ~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~ 1118 (1446)
.+.|.. +
T Consensus 285 ------------------------------~~~~~~----~--------------------------------------- 291 (623)
T PRK10261 285 ------------------------------RRFPLI----S--------------------------------------- 291 (623)
T ss_pred ------------------------------cccccc----c---------------------------------------
Confidence 000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC
Q 000521 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1446)
Q Consensus 1119 ~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~ 1198 (1446)
.. . .. .. .
T Consensus 292 ---------------------~~---~-~~-~~----------------------------------------------~ 299 (623)
T PRK10261 292 ---------------------LE---H-PA-KQ----------------------------------------------E 299 (623)
T ss_pred ---------------------cc---c-cc-cc----------------------------------------------C
Confidence 00 0 00 00 0
Q ss_pred CccccccCCCCCCCCCCCccEEEEEEEEEecCC---------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Q 000521 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1199 ~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
+.+. ....+ +....++++|++++|+.. ...+|+|+||+|++||++||+|+||||||||+++|.|+
T Consensus 300 ~~~~---~~~~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl 373 (623)
T PRK10261 300 PPIE---QDTVV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL 373 (623)
T ss_pred cccc---ccccc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 0000 00000 011259999999999621 13699999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCeeCCCCChH---hHhcceEEEeCCCC--CCC-CcHHHhcCCC----CCCChHHHHHHHHHccHHHHHH
Q 000521 1270 TPICGGQILVDGLNIINTPVR---DLRGRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVE 1339 (1446)
Q Consensus 1270 ~~~~~G~I~IDG~di~~i~~~---~lR~~i~~VpQdp~--lF~-gTIR~NLdp~----~~~~d~ei~~aL~~~~L~~~i~ 1339 (1446)
++|++|+|.+||.++...+.. .+|++|+||||+|. +++ -|+++|+... +....++.. ....+.++
T Consensus 374 ~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~ 448 (623)
T PRK10261 374 VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLE 448 (623)
T ss_pred CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHH
Confidence 999999999999999877643 46788999999984 665 4999998531 111111111 11223344
Q ss_pred hCCCc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh
Q 000521 1340 AVGLE-TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1416 (1446)
Q Consensus 1340 ~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~ 1416 (1446)
.+|++ .........||||||||++|||||+.+|++||||||||+||..+.+.+.+.|++.. .+.|||+|||+++.+.
T Consensus 449 ~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~ 528 (623)
T PRK10261 449 RVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVE 528 (623)
T ss_pred HcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 44664 33455566899999999999999999999999999999999999999999998754 3789999999999987
Q ss_pred h-cCEEEEEeCCEEEEEeccchhh
Q 000521 1417 N-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1417 ~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
. ||||++|++|+|+|.|.+..+|
T Consensus 529 ~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 529 RISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 6 8999999999999999888765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=677.86 Aligned_cols=529 Identities=19% Similarity=0.230 Sum_probs=405.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973 (1446)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 973 (1446)
+..+++.+++.++..++....++.+...++.... ......+...+++++++..++.+++.+++.+.+.+...+++.+
T Consensus 59 ~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lR~~ 135 (1466)
T PTZ00265 59 RKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNL---GENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLE 135 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555566655553211 1123344556667777788888899999999999999999999
Q ss_pred HHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHH
Q 000521 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1053 (1446)
Q Consensus 974 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~ 1053 (1446)
++++++++|++|||..+.|++++|++.|++.+...+...+..++..++.+++.++++++.+|.+.++++.++.+++.+..
T Consensus 136 ~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl~~~~~~ 215 (1466)
T PTZ00265 136 FLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGV 215 (1466)
T ss_pred HHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888888888888888888888888877665544444333333333
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000521 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1133 (1446)
Q Consensus 1054 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1133 (1446)
.+.+..+...+......+...+.+.|+++|++|||+|+.|+++.++|.+..+...+..+.......+......++..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 295 (1466)
T PTZ00265 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASY 295 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444344444444455667789999999999999999999999999988888877766654444332222222221111
Q ss_pred HHHHHHHH-HhhcCC---CCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCC
Q 000521 1134 SFIATMAV-IGSRGN---LPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSL 1209 (1446)
Q Consensus 1134 ~~~~~~~v-~~~~~~---~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~ 1209 (1446)
.++.++.. ....+. ...+..++|.+...+.+.+.....+..+...+.++..+..|.+|+.+.++.+++..... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~--~ 373 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENND--D 373 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 11111110 001110 00112344544434434443344455667788899999999999999998766532111 1
Q ss_pred CCCCCCCccEEEEEEEEEecCCC-CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-cCeeCCCC
Q 000521 1210 SPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV-DGLNIINT 1287 (1446)
Q Consensus 1210 ~~~wp~~g~I~f~nVs~~Y~~~~-~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I-DG~di~~i 1287 (1446)
....|..+.|+|+||+|+|+... .++|+|+||+|++||++||||+||||||||+++|.|+|+|++|+|.+ ||.|++++
T Consensus 374 ~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDI 453 (1466)
T ss_pred CccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC
Confidence 11223345899999999997432 36999999999999999999999999999999999999999999999 67999999
Q ss_pred ChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-------------------------------------------------
Q 000521 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH------------------------------------------------- 1318 (1446)
Q Consensus 1288 ~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~------------------------------------------------- 1318 (1446)
+.+++|++|++|||+|.+|++||+|||.++.
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE 533 (1466)
T ss_pred CHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence 9999999999999999999999999997631
Q ss_pred ---------CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHH
Q 000521 1319 ---------MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387 (1446)
Q Consensus 1319 ---------~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~ 1387 (1446)
..+|++++++++.+++++++..+ |+||.+|++|.+||||||||++||||++++|+|||||||||+||++
T Consensus 534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~ 613 (1466)
T PTZ00265 534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK 613 (1466)
T ss_pred hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 24678999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCC
Q 000521 1388 TASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHG 1427 (1446)
Q Consensus 1388 Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G 1427 (1446)
+++.|++.|++.. +++|+|+||||+++++.||+|+||++|
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999875 489999999999999999999999996
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-62 Score=622.40 Aligned_cols=534 Identities=19% Similarity=0.213 Sum_probs=417.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSG---HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~---~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
+++.+++.++...++.++..++..+.|.+++.+++... .... .......+++++++.++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888899999999999999999998642 2211 0111112333444556677777777788889999
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhhHhHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSG 420 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~---lL~~~lg~a~l~~ 420 (1446)
++...+...+|+|.++++....++.+.|++++.++.|++.+.+... .+..+....+.+++++. .+.+.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888999999999999999998664 34444444444433332 3333344333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 421 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500 (1446)
Q Consensus 421 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 500 (1446)
++ ++...+..++.++.++..++..+..++..+.+.|.++|+++||.||.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LL--LLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222233556677778888888999999999999999999999999999998888877655555544444444333
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000521 501 VFFWATTP--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSL-ISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1446)
Q Consensus 501 ~~~~~~~~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l-~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1446)
..+..... ..+.++.+|.+.+ ++.++++..++++.+..++ ..|+..++..+..+.++.++.+||.++++.++..+.
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22222111 2223455666664 6778999988877765443 468888999999999999999999999976532110
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000521 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~ 657 (1446)
... .+. ......++++|++|+|+.++ +++|+|+||++++||.++|+||||||||||+++|+|++
T Consensus 327 ~~~---~~~---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~ 390 (574)
T PRK11160 327 PTT---STA---------AADQVSLTLNNVSFTYPDQP----QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 (574)
T ss_pred Ccc---cCC---------CCCCCeEEEEEEEEECCCCC----CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 000 000 11235699999999996421 24699999999999999999999999999999999999
Q ss_pred cCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccc
Q 000521 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYI 723 (1446)
Q Consensus 658 ~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~i 723 (1446)
+|++|+|.++| .|+||||+|++|++||+|||.++.+ .++++..++++.++++++++. |+|++|.+
T Consensus 391 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~v 469 (574)
T PRK11160 391 DPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWL 469 (574)
T ss_pred CCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchh
Confidence 99999999987 4999999999999999999999875 688899999999999999999 99999999
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEe
Q 000521 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 803 (1446)
Q Consensus 724 g~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 803 (1446)
||+|.+||||||||++||||++++|++++||||||+||+++++++.+. +.. ..+++|+|+||||++.++.||+|++|+
T Consensus 470 ge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~-l~~-~~~~~tviiitHr~~~~~~~d~i~~l~ 547 (574)
T PRK11160 470 GEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL-LAE-HAQNKTVLMITHRLTGLEQFDRICVMD 547 (574)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecChhHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999887 433 456899999999999999999999999
Q ss_pred CCEEEEecChhHHHhccccCc
Q 000521 804 KGQVKWIGSSADLAVSLYSGF 824 (1446)
Q Consensus 804 ~G~i~~~g~~~~l~~~~~~~~ 824 (1446)
+|++++.|+++|++++++.+.
T Consensus 548 ~G~i~~~g~~~~l~~~~g~y~ 568 (574)
T PRK11160 548 NGQIIEQGTHQELLAQQGRYY 568 (574)
T ss_pred CCeEEEeCCHHHHHhcCcHHH
Confidence 999999999999987765443
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=625.75 Aligned_cols=532 Identities=19% Similarity=0.219 Sum_probs=413.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348 (1446)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~ 348 (1446)
.++.++..++..++..++..++.++.|+++..++|.+.++.. . ..+++.++++.++..+......+...+...+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--I-FPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRL 89 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677778888999999999999999999998764321 1 1122222222333333344455566778888899
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH---HHHhhHhHHHHHHHHHHH
Q 000521 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL---YLLYTQVKFAFVSGLAIT 424 (1446)
Q Consensus 349 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~---~lL~~~lg~a~l~~~~v~ 424 (1446)
.+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+..+....+..++.+ +.+.+.+++..+ +++
T Consensus 90 ~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l---~~~ 166 (588)
T PRK13657 90 AVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLV---VLG 166 (588)
T ss_pred HHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999999888889999999999999999876432 3333333333222222 233333443333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1446)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1446)
++...+..++.++..+.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+.-++-.+...+..........+.
T Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK13657 167 IVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLN 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566778888888888999999999999999999999999999998777776654333333222222222221111
Q ss_pred H--HHHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000521 505 A--TTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1446)
Q Consensus 505 ~--~~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1446)
. .....+.++++|.|.+..+.+|++.+++++.++..+..|+..+...+..+.++..+.+|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-- 324 (588)
T PRK13657 247 RAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG-- 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC--
Confidence 1 112234456778888888899999999999999999999999999999999999999999999876432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000521 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G 662 (1446)
... .......++++|++|+|+.+ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~I~~~~vsf~y~~~-----~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 325 -AID--------LGRVKGAVEFDDVSFSYDNS-----RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred -CCC--------cCCCCCeEEEEEEEEEeCCC-----CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 000 01123469999999999632 2359999999999999999999999999999999999999999
Q ss_pred EEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 663 ~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
+|.++| .|+||||+|++|++||||||.++++ .++++..++++.+++++.++.+|+|.+|.+|++|.
T Consensus 391 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~ 470 (588)
T PRK13657 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGR 470 (588)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCC
Confidence 999987 5999999999999999999999864 67888999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
+||||||||++||||++++|+|++||||||+||+++++.+++.+ .. ..+++|+|+||||++.++.||+|++|++|++.
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l-~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~ 548 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAAL-DE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVV 548 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999998873 33 44689999999999999999999999999999
Q ss_pred EecChhHHHhccccCc
Q 000521 809 WIGSSADLAVSLYSGF 824 (1446)
Q Consensus 809 ~~g~~~~l~~~~~~~~ 824 (1446)
++|+++++++..+.+.
T Consensus 549 ~~g~~~~l~~~~~~y~ 564 (588)
T PRK13657 549 ESGSFDELVARGGRFA 564 (588)
T ss_pred EeCCHHHHHHCCChHH
Confidence 9999999986654443
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-63 Score=625.65 Aligned_cols=511 Identities=16% Similarity=0.148 Sum_probs=382.7
Q ss_pred HHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000521 902 LSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNA 981 (1446)
Q Consensus 902 ~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~ 981 (1446)
++.++...+....++.++.+.+.... ... ..+..++++.++..++.++..+.....+.+...+++.++++++++.
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~i~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~ 99 (555)
T TIGR01194 25 ALGLAGGLAIIALLASINNAIHEENF--LGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGA 99 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc--ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444455555566677766553110 000 1122233445555667777778888899999999999999999999
Q ss_pred CcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 982 PVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRE 1061 (1446)
Q Consensus 982 p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~ 1061 (1446)
|+.+|++.++|++++|+++|++.+++.+.. +..++..++.+++.++++++..|.+.++++..+++...+.....+..++
T Consensus 100 ~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~ 178 (555)
T TIGR01194 100 PIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFK 178 (555)
T ss_pred CHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987753 5555666666666666777777766554433333322222222222233
Q ss_pred HHHHHHhhcchhHhHHHHhhcchHHHhhcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000521 1062 LRRLDSVSRSPIYASFTETLNGSSTIRAFKSED--YFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATM 1139 (1446)
Q Consensus 1062 l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~--~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~ 1139 (1446)
..+......+.+.+.+.|.+.|+++||+|+.++ ...+++.+..++..+................+++..+.. ++.
T Consensus 179 ~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 255 (555)
T TIGR01194 179 FFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLI---GCA 255 (555)
T ss_pred HHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 333333455678899999999999999999954 556677777666666554332222221111122211111 111
Q ss_pred HHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccc-cc---cC-CCC--CCC
Q 000521 1140 AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE-LC---GY-QSL--SPD 1212 (1446)
Q Consensus 1140 ~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~-~~---~~-~~~--~~~ 1212 (1446)
.+++.. .+..+.|.+...+.++..+..++..+...+.++++...+.+|+.++.+.+.++ .. .. ... .+.
T Consensus 256 ~~~~~~----~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~ 331 (555)
T TIGR01194 256 LFAAAM----FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAH 331 (555)
T ss_pred HHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 111110 12356788888888888999999999999999999999999999997642221 10 00 000 011
Q ss_pred CCCCccEEEEEEEEEecCC---CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh
Q 000521 1213 WPFQGLIEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289 (1446)
Q Consensus 1213 wp~~g~I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1289 (1446)
.+..+.|+|+||+|+|++. .+++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~ 411 (555)
T TIGR01194 332 DKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR 411 (555)
T ss_pred CCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH
Confidence 1234789999999999753 2369999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
+++|+++++|||||++|++|+|+|+.+ ..+|++++++++.++++++++.+ |+||. .+||||||||++||||
T Consensus 412 ~~~~~~i~~v~q~~~lf~~ti~~n~~~--~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRa 484 (555)
T TIGR01194 412 DDYRDLFSAIFADFHLFDDLIGPDEGE--HASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICA 484 (555)
T ss_pred HHHHhhCcEEccChhhhhhhhhccccc--chhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHH
Confidence 999999999999999999999999743 46788999999999999999988 99984 5899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHH-h-cCCcEEEEeccCchhHhhcCEEEEEeCCEEEEE
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISS-E-CKGMTVITIAHRISTVLNMDEILILDHGHLVCI 1432 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~-~-~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~ 1432 (1446)
++++|+|||||||||+||++|++.+++.+.+ . .+++|+|+||||++++..||+|+||++|+++|.
T Consensus 485 ll~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 485 WLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999887643 2 368999999999999999999999999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-62 Score=619.76 Aligned_cols=520 Identities=19% Similarity=0.223 Sum_probs=415.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 272 AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM 351 (1446)
Q Consensus 272 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~ 351 (1446)
.+++.++..+++.++..++..+.|++++.++|.+....+....+.+++.++++.++..++.....+...+.+.++...+.
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888889999999999999999999765322223334455566666777888888888889999999999999
Q ss_pred HHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHH--HHHHhhHhHHHHHHHHHHHHHH
Q 000521 352 TIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS--FHDAWSLPFQIGVA--LYLLYTQVKFAFVSGLAITILL 427 (1446)
Q Consensus 352 ~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~--~~~~~~~pl~i~i~--~~lL~~~lg~a~l~~~~v~~~~ 427 (1446)
..+|+|.++++... .+...+.++.|++++.+.... +..+...++.++.. ++.+.+.+++.++++++ +.
T Consensus 83 ~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~---l~ 154 (544)
T TIGR01842 83 QPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAV---VL 154 (544)
T ss_pred HHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HH
Confidence 99999999998732 245667788999999876543 33344444443332 33333444444433332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 428 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 507 (1446)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 507 (1446)
..+..+..++.++..++.++..+++.+.+.|.++|+++||.+|+|+.+.+++++..++..+...+.....+....+....
T Consensus 155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (544)
T TIGR01842 155 VGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYF 234 (544)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777788888999999999999999999999999999999999988876665555554444443332222222
Q ss_pred H--HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCC
Q 000521 508 P--TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSP 585 (1446)
Q Consensus 508 ~--~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~ 585 (1446)
. ..+.++++|.|.+.++.+|++.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+.. .+
T Consensus 235 ~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-----~~ 309 (544)
T TIGR01842 235 RIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-----CC
Confidence 1 2234567888888888999999999999999999999999999999999999999999999754432110 00
Q ss_pred CcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEE
Q 000521 586 SYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665 (1446)
Q Consensus 586 ~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~ 665 (1446)
. +..+..++++|++|+|+..+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.
T Consensus 310 ~---------~~~~~~i~~~~v~~~y~~~~----~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 310 L---------PEPEGHLSVENVTIVPPGGK----KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred C---------CCCCCeEEEEEEEEEcCCCC----ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 0 11234699999999996421 2459999999999999999999999999999999999999999999
Q ss_pred EeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 666 ASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 666 ~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
++| .++||||+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 986 4999999999999999999986554 78888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEec
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 811 (1446)
||||||++||||++++|+++|||||||+||+++++++.+. +.....+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA-IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHH-HHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 9999999999999999999999999999999999999876 333123579999999999999899999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+++++.+
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-65 Score=573.07 Aligned_cols=476 Identities=25% Similarity=0.365 Sum_probs=385.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhh-hHHhHhHH
Q 000521 958 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV-VLSYVQVF 1036 (1446)
Q Consensus 958 ~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~-~~~~~~~~ 1036 (1446)
++...+..+-+.+--+.|.++.+..+.|.-+..+|-+..-......-|+..+-..+.+.+-.++-+...++ ......||
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 45556667777788888899999999998887777554444443334443343444444333333322222 22334567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1037 FLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELT 1116 (1446)
Q Consensus 1037 ~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~ 1116 (1446)
+.++.+..+++|.++.-.-....-..||.-..+.+..++.-.+++-+..|+|.||.|+++..+|.+.++.++++..+...
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 76666665555544433222222334555555666667788899999999999999999999999999999999888877
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 000521 1117 ASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1446)
Q Consensus 1117 ~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~ 1196 (1446)
.-.||++.-..+..........+... ....+..+.|.+...-.+..+++.+++.+...+.++.+++...|+..+..
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~----~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSAL----GVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHH----HHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 77787776555444322222222111 11245567889999999999999999999999999999999999999999
Q ss_pred cCCccccccCCCCCCCCC-CCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000521 1197 DVPQEELCGYQSLSPDWP-FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1446)
Q Consensus 1197 ~~~~e~~~~~~~~~~~wp-~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1275 (1446)
+.+.|....+ ..++-|| ..|.|.|+||+|.|.+. .++|+|+||++++|+++||||+||+||||+..+|+|||++++|
T Consensus 241 ~~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCC-CCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 8877653322 2344575 46889999999999876 4799999999999999999999999999999999999999999
Q ss_pred eEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCC
Q 000521 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGI 1352 (1446)
Q Consensus 1276 ~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~ 1352 (1446)
+|.|||+||..+..+.+|+.||+||||.+||+.|+..|+.++++ .+++|++.|++.+++.++++.+ |+||.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999998875 5899999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEE
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCI 1432 (1446)
Q Consensus 1353 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~ 1432 (1446)
.||||||||+++||++|++|+||+||||||+||..||+.||..|++..+++|.++|||||+||.++|.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhh
Q 000521 1433 SFICRYF 1439 (1446)
Q Consensus 1433 ~~~~~~~ 1439 (1446)
|+-..+.
T Consensus 479 g~h~~ll 485 (497)
T COG5265 479 GTHEELL 485 (497)
T ss_pred CcHHHHH
Confidence 9876553
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=678.09 Aligned_cols=247 Identities=21% Similarity=0.279 Sum_probs=196.2
Q ss_pred HHHHHHHhHHHHHHHHHh--cCCccccccCCCCCCCCCCCc--cEEEEEEEEEec--CCCCcccceeeEEEeCCcEEEEE
Q 000521 1179 FTETEKEMVSLERVLEYM--DVPQEELCGYQSLSPDWPFQG--LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIV 1252 (1446)
Q Consensus 1179 ~~~~e~~~~sv~Ri~~~~--~~~~e~~~~~~~~~~~wp~~g--~I~f~nVs~~Y~--~~~~~vL~~isl~I~~GekvgIv 1252 (1446)
..+.|+.+.++||..++. +.++|.......... .+.+| .++++||+++|+ ++.+.+|+|||++|+|||++||+
T Consensus 717 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~ 795 (1394)
T TIGR00956 717 GETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDM-EKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALM 795 (1394)
T ss_pred ccccccccccccccccCCCCccccccccccccccc-cccCCCceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEE
Confidence 345667778889988763 233332111111000 01134 479999999995 33457999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCC---CCCceEEEcCeeCCCCChHhHhcceEEEeCCCCC-CCCcHHHhcCCC------CCCCh
Q 000521 1253 GRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNLDPF------HMNDD 1322 (1446)
Q Consensus 1253 GrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~l-F~gTIR~NLdp~------~~~~d 1322 (1446)
||||||||||+++|.|+.+ |++|+|.+||.++. ..+|++++||||++.+ +..|+||||++. ...++
T Consensus 796 G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~ 871 (1394)
T TIGR00956 796 GASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSK 871 (1394)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCH
Confidence 9999999999999999997 68899999999985 2578999999998765 457999999742 12233
Q ss_pred HH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC-EEEEeccCCCCCHHHHHHHHHHHH
Q 000521 1323 LK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK-VLCLDECTANVDAQTASILQNAIS 1397 (1446)
Q Consensus 1323 ~e----i~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~-ILlLDEaTS~lD~~Te~~Iq~~I~ 1397 (1446)
++ +.++++..++.+ -.|+.+++.|.+||||||||++|||||+++|+ ||+||||||+||..+...|++.|+
T Consensus 872 ~~~~~~v~~~l~~l~L~~-----~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~ 946 (1394)
T TIGR00956 872 SEKMEYVEEVIKLLEMES-----YADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMR 946 (1394)
T ss_pred HHHHHHHHHHHHHcCChh-----hCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 33 445566555543 36888888888999999999999999999997 999999999999999999999998
Q ss_pred Hh-cCCcEEEEeccCchhH--hhcCEEEEEeCC-EEEEEecc
Q 000521 1398 SE-CKGMTVITIAHRISTV--LNMDEILILDHG-HLVCISFI 1435 (1446)
Q Consensus 1398 ~~-~~~~TvI~IaHrl~ti--~~~DrIlvl~~G-~vvE~~~~ 1435 (1446)
+. .+|+|||+++|+++.. ..||+|++|++| +++++|.+
T Consensus 947 ~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 947 KLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred HHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 86 4689999999999974 569999999997 99999987
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=621.70 Aligned_cols=522 Identities=20% Similarity=0.237 Sum_probs=412.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000521 284 KVVNDSIGFAGPLLLNKLIKFLQQGS-GHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVR 362 (1446)
Q Consensus 284 ~l~~~~~~~~~P~ll~~li~~~~~~~-~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~ 362 (1446)
.++..++..+.|++++.++|.+.... .....+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++
T Consensus 4 ~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~ 83 (569)
T PRK10789 4 LIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQH 83 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34556777889999999999775422 22223334445555566677777677777888999999999999999999999
Q ss_pred ccccCCCChhHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 363 LAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQIGVALYLLYTQVKF-AFVSGLAITILLIPVNKWIANLIAN 440 (1446)
Q Consensus 363 ~~~~~~~~~g~i~nlms~D~~~i~~~~-~~~~~~~~~pl~i~i~~~lL~~~lg~-a~l~~~~v~~~~~~~~~~~~~~~~~ 440 (1446)
...+.+.+.|++++.+++|++.+.... ..+..++..++..++++++++..++| .+++.++++++...+..++.+++.+
T Consensus 84 ~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 84 PEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888899999999999999998654 34555665555544444333223333 2223333333344455667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 000521 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP--TLFSLFTFGL 518 (1446)
Q Consensus 441 ~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~ 518 (1446)
..++..+..++..+.+.|.++|+++||.+++|+.+.+++.+..++..+...+.....+....+..... ..+.++++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999998888776544433333333333332222211111 2233456778
Q ss_pred HHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCC
Q 000521 519 FALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSK 598 (1446)
Q Consensus 519 ~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1446)
|.+.++.+|++.+++++.+...+..|+..+++.+..+.+++++.+||.++++.++..+... .+. +..
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~----~~~---------~~~ 310 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS----EPV---------PEG 310 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CCC---------CCC
Confidence 8888889999999999999999999999999999999999999999999997643211000 000 112
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------- 668 (1446)
+..++++|++|+|+..+ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 311 ~~~I~~~~v~~~y~~~~----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 311 RGELDVNIRQFTYPQTD----HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386 (569)
T ss_pred CCcEEEEEEEEECCCCC----CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHH
Confidence 34689999999997421 2459999999999999999999999999999999999999999999986
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCC-CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000521 669 ---SIAYVPQVPWILSGTIRDNILFGK-NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~ti~~nI~~g~-~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARal 744 (1446)
.++||+|+|++|++|++|||.++. +.++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||||+
T Consensus 387 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARal 466 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARAL 466 (569)
T ss_pred HHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 489999999999999999999985 4688899999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhccccCc
Q 000521 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGF 824 (1446)
Q Consensus 745 y~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~ 824 (1446)
+++|+++|||||||+||+++++++.+. +.. ..+++|+|++||+++.++.||+|++|++|+++++|+++++.++.+.+.
T Consensus 467 l~~~~illlDEpts~LD~~~~~~i~~~-l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~ 544 (569)
T PRK10789 467 LLNAEILILDDALSAVDGRTEHQILHN-LRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYR 544 (569)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHH-HHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHH
Confidence 999999999999999999999999987 433 457899999999999999999999999999999999999987655443
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-64 Score=632.47 Aligned_cols=442 Identities=23% Similarity=0.312 Sum_probs=336.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC--CCcEEEEeC----------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG---------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~--~~G~i~~~~---------- 668 (1446)
.++++|++++|.. .++|+|+||++++||+++|+||||||||||+++|.|.++| ++|+|.++|
T Consensus 5 ~l~~~nl~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFGG------VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeCC------eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH
Confidence 4789999999852 2359999999999999999999999999999999999996 899999865
Q ss_pred ----eEEEEcCCCCCCCc-cHHHHHhcCCCC------Chh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 ----SIAYVPQVPWILSG-TIRDNILFGKNY------DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 ----~i~yv~Q~p~l~~~-ti~~nI~~g~~~------~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.++||+|+|.++.. |++||+.++... +.+ +.+++++..++. ........+||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG 147 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLG 147 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHH
Confidence 38999999987765 999999886421 221 223333333332 1234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
||||++||||+..+|+++||||||++||+...+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI-IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 99999999999999999999999999999999988875 33212357899999999999865 99999999999987664
Q ss_pred hhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhh
Q 000521 813 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 892 (1446)
Q Consensus 813 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 892 (1446)
.+++.. .+ ... .+.
T Consensus 227 ~~~~~~-----------------------------------------------------~~-------~~~---~~~--- 240 (506)
T PRK13549 227 AAGMTE-----------------------------------------------------DD-------IIT---MMV--- 240 (506)
T ss_pred cccCCH-----------------------------------------------------HH-------HHH---Hhh---
Confidence 322100 00 000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 893 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 972 (1446)
Q Consensus 893 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 972 (1446)
. .
T Consensus 241 ------------------------------~---~--------------------------------------------- 242 (506)
T PRK13549 241 ------------------------------G---R--------------------------------------------- 242 (506)
T ss_pred ------------------------------C---c---------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHH
Q 000521 973 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1052 (1446)
Q Consensus 973 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~ 1052 (1446)
+
T Consensus 243 ---------~---------------------------------------------------------------------- 243 (506)
T PRK13549 243 ---------E---------------------------------------------------------------------- 243 (506)
T ss_pred ---------C----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000521 1053 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1132 (1446)
Q Consensus 1053 ~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1132 (1446)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCC
Q 000521 1133 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1212 (1446)
Q Consensus 1133 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~ 1212 (1446)
.. . ..+.+ .++
T Consensus 244 -----------------~~---~-----------------------------------------~~~~~------~~~-- 254 (506)
T PRK13549 244 -----------------LT---A-----------------------------------------LYPRE------PHT-- 254 (506)
T ss_pred -----------------cc---c-----------------------------------------ccccc------ccC--
Confidence 00 0 00000 000
Q ss_pred CCCCccEEEEEEEEEecC-CCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEEcCeeCCCCCh-
Q 000521 1213 WPFQGLIEFQNVTMRYKP-SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-ICGGQILVDGLNIINTPV- 1289 (1446)
Q Consensus 1213 wp~~g~I~f~nVs~~Y~~-~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-~~~G~I~IDG~di~~i~~- 1289 (1446)
+....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.|+...+.
T Consensus 255 -~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~ 333 (506)
T PRK13549 255 -IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQ 333 (506)
T ss_pred -CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHH
Confidence 01124899999999953 23469999999999999999999999999999999999998 599999999999875543
Q ss_pred HhHhcceEEEeCCC---CCCC-CcHHHhcCCCC--CC------ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCCh
Q 000521 1290 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFH--MN------DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSV 1356 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp---~lF~-gTIR~NLdp~~--~~------~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSg 1356 (1446)
+..|++++|+||+| .+|+ -|+.+|+.... .. +.++ .+....+.++.+|++. ........|||
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSg 408 (506)
T PRK13549 334 QAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRLKVKTASPELAIARLSG 408 (506)
T ss_pred HHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhcCccCCCcccccccCCH
Confidence 45677899999997 3565 59999996421 11 1111 1112334445556642 34555668999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1357 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
|||||++||||++++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. |||+++|++|+++..|.
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998753 48999999999999875 89999999999998887
Q ss_pred cchh
Q 000521 1435 ICRY 1438 (1446)
Q Consensus 1435 ~~~~ 1438 (1446)
+..+
T Consensus 489 ~~~~ 492 (506)
T PRK13549 489 NHNL 492 (506)
T ss_pred cccC
Confidence 7654
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=634.05 Aligned_cols=451 Identities=25% Similarity=0.336 Sum_probs=339.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------- 668 (1446)
.++++|++++|+... ....+|+|+||++++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~--~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQ--TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred eEEEeceEEEecCCC--CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 478999999985321 112469999999999999999999999999999999999986 799998754
Q ss_pred ----------eEEEEcCCCC--CCC-ccHHHHHhcCC----CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCC
Q 000521 669 ----------SIAYVPQVPW--ILS-GTIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727 (1446)
Q Consensus 669 ----------~i~yv~Q~p~--l~~-~ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g 727 (1446)
.+||++|+|. +++ .|+++|+.++. ..+ .++.+++++.+++.... .......
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~ 154 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYP 154 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCC
Confidence 3899999985 444 49999986421 122 13445566666664211 0124456
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCC
Q 000521 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKG 805 (1446)
Q Consensus 728 ~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G 805 (1446)
.+|||||||||+||||++.+|+++||||||++||+...+++.+. +..... .++|+|+|||+++.+.. ||+|++|++|
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G 233 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQL-LRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHH-HHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECC
Confidence 78999999999999999999999999999999999999998875 322112 37899999999998765 9999999999
Q ss_pred EEEEecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhH
Q 000521 806 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 885 (1446)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 885 (1446)
++++.|+++++.... .. . +
T Consensus 234 ~i~~~g~~~~~~~~~---------------------------------------------------------~~-~---~ 252 (529)
T PRK15134 234 RCVEQNRAATLFSAP---------------------------------------------------------TH-P---Y 252 (529)
T ss_pred EEEEeCCHHHHhhCC---------------------------------------------------------CC-H---H
Confidence 999887765542100 00 0 0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 886 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 965 (1446)
Q Consensus 886 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 965 (1446)
.+ .
T Consensus 253 ---~~-----------------------------------------------------------------~--------- 255 (529)
T PRK15134 253 ---TQ-----------------------------------------------------------------K--------- 255 (529)
T ss_pred ---HH-----------------------------------------------------------------H---------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHH
Q 000521 966 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1045 (1446)
Q Consensus 966 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~ 1045 (1446)
T Consensus 256 -------------------------------------------------------------------------------- 255 (529)
T PRK15134 256 -------------------------------------------------------------------------------- 255 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000521 1046 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1125 (1446)
Q Consensus 1046 ~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1125 (1446)
++. .
T Consensus 256 --------~~~------------~-------------------------------------------------------- 259 (529)
T PRK15134 256 --------LLN------------S-------------------------------------------------------- 259 (529)
T ss_pred --------HHH------------h--------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCcccccc
Q 000521 1126 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205 (1446)
Q Consensus 1126 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~ 1205 (1446)
. ... ++. .
T Consensus 260 ---------------------~-~~~-----------------------------------------------~~~--~- 267 (529)
T PRK15134 260 ---------------------E-PSG-----------------------------------------------DPV--P- 267 (529)
T ss_pred ---------------------C-ccc-----------------------------------------------ccc--c-
Confidence 0 000 000 0
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecC---------CCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 000521 1206 YQSLSPDWPFQGLIEFQNVTMRYKP---------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1446)
Q Consensus 1206 ~~~~~~~wp~~g~I~f~nVs~~Y~~---------~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1446)
..++ ....|+++|++++|+. +..++|+|+||+|++||++||+|+||||||||+++|.|+++ ++|+
T Consensus 268 -~~~~----~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~ 341 (529)
T PRK15134 268 -LPEP----ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE 341 (529)
T ss_pred -cCCC----CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE
Confidence 0000 0114899999999952 12469999999999999999999999999999999999985 8999
Q ss_pred EEEcCeeCCCCChHh---HhcceEEEeCCCC--CCC-CcHHHhcCCCC-----CCChHHHHHHHHHccHHHHHHhCCCc-
Q 000521 1277 ILVDGLNIINTPVRD---LRGRFAVVPQSPF--LFE-GSLRDNLDPFH-----MNDDLKIWSVLEKCHVKEEVEAVGLE- 1344 (1446)
Q Consensus 1277 I~IDG~di~~i~~~~---lR~~i~~VpQdp~--lF~-gTIR~NLdp~~-----~~~d~ei~~aL~~~~L~~~i~~lgLd- 1344 (1446)
|.+||.++...+... +|++++||||+|. +|+ .|+++|+.... ..+..+. +....+.++.+|++
T Consensus 342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~ 416 (529)
T PRK15134 342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEVGLDP 416 (529)
T ss_pred EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHcCCCH
Confidence 999999998776543 4778999999983 666 49999996421 0111111 11123344445665
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEE
Q 000521 1345 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEI 1421 (1446)
Q Consensus 1345 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrI 1421 (1446)
........+||||||||++||||++.+|+||||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.. ||||
T Consensus 417 ~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 24455667899999999999999999999999999999999999999999998764 27899999999999875 9999
Q ss_pred EEEeCCEEEEEeccchhh
Q 000521 1422 LILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1422 lvl~~G~vvE~~~~~~~~ 1439 (1446)
++|++|++++.|.+..++
T Consensus 497 ~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 497 IVLRQGEVVEQGDCERVF 514 (529)
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999887654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-64 Score=630.19 Aligned_cols=439 Identities=21% Similarity=0.323 Sum_probs=334.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|.. +.+++|+||++++||+++|+||||||||||+++|.|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 5 YISMAGIGKSFGP------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred eEEEeeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 4789999998852 2359999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC-----C-----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 669 --SIAYVPQVPWILSG-TIRDNILFGKN-----Y-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~-ti~~nI~~g~~-----~-----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
.++|++|++.++.. |++||+.++.. + +. ++..++++.+++.. .......+||
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 147 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV-----------DLDEKVANLS 147 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCC
Confidence 38999999987765 99999987531 0 11 12333444444432 1244556899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
|||||||+||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..
T Consensus 148 gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~ 226 (510)
T PRK09700 148 ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI-MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCS 226 (510)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeee
Confidence 9999999999999999999999999999999999998876 33212347899999999999875 999999999999877
Q ss_pred cChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHh
Q 000521 811 GSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 890 (1446)
Q Consensus 811 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~ 890 (1446)
|+++++... +.. ....+
T Consensus 227 g~~~~~~~~------------------------------------------------~~~---~~~~~------------ 243 (510)
T PRK09700 227 GMVSDVSND------------------------------------------------DIV---RLMVG------------ 243 (510)
T ss_pred cchhhCCHH------------------------------------------------HHH---HHhcC------------
Confidence 664432100 000 00000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 891 FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKV 970 (1446)
Q Consensus 891 ~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 970 (1446)
.
T Consensus 244 ------------------------------------~------------------------------------------- 244 (510)
T PRK09700 244 ------------------------------------R------------------------------------------- 244 (510)
T ss_pred ------------------------------------C-------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHH
Q 000521 971 HNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSK 1050 (1446)
Q Consensus 971 h~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~ 1050 (1446)
+.
T Consensus 245 -----------~~------------------------------------------------------------------- 246 (510)
T PRK09700 245 -----------EL------------------------------------------------------------------- 246 (510)
T ss_pred -----------Cc-------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000521 1051 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1130 (1446)
Q Consensus 1051 i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~ 1130 (1446)
. .
T Consensus 247 ------------~-----~------------------------------------------------------------- 248 (510)
T PRK09700 247 ------------Q-----N------------------------------------------------------------- 248 (510)
T ss_pred ------------c-----c-------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCC
Q 000521 1131 FIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLS 1210 (1446)
Q Consensus 1131 ~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~ 1210 (1446)
.. .. . .++ ..++
T Consensus 249 ----------------~~-~~---~------------------------------------------~~~------~~~~ 260 (510)
T PRK09700 249 ----------------RF-NA---M------------------------------------------KEN------VSNL 260 (510)
T ss_pred ----------------cc-cc---c------------------------------------------ccc------cccC
Confidence 00 00 0 000 0000
Q ss_pred CCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-
Q 000521 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1289 (1446)
Q Consensus 1211 ~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~- 1289 (1446)
+....++++|+++.|. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.
T Consensus 261 ---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 261 ---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPL 333 (510)
T ss_pred ---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHH
Confidence 0112599999998763 38999999999999999999999999999999999999999999999999876543
Q ss_pred HhHhcceEEEeCCC---CCCCC-cHHHhcCCCCCC------------ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCC
Q 000521 1290 RDLRGRFAVVPQSP---FLFEG-SLRDNLDPFHMN------------DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI 1352 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp---~lF~g-TIR~NLdp~~~~------------~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~ 1352 (1446)
..+|++++|+||++ .+|++ |+++|+...... ...+ ++....+.++.+|+. ........
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhcCCCCCCccCccc
Confidence 45678999999984 57765 999998753210 1111 111223444555664 34455556
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEE
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLV 1430 (1446)
Q Consensus 1353 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vv 1430 (1446)
.||||||||++|||||+++|+|||||||||+||..+.+.+.+.|++.. ++.|||+|||+++.+.. ||||++|++|+++
T Consensus 409 ~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~ 488 (510)
T PRK09700 409 ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLT 488 (510)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998753 48899999999998764 8999999999999
Q ss_pred EEecc
Q 000521 1431 CISFI 1435 (1446)
Q Consensus 1431 E~~~~ 1435 (1446)
+.+.+
T Consensus 489 ~~~~~ 493 (510)
T PRK09700 489 QILTN 493 (510)
T ss_pred EEecC
Confidence 88766
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-62 Score=616.78 Aligned_cols=527 Identities=23% Similarity=0.285 Sum_probs=418.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 352 (1446)
Q Consensus 273 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~ 352 (1446)
++ .++...++.++..++....|.++..+++.+.. .......+...+++++++..++.....+...+.+.++...+..
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~ 89 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRR 89 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 77778888889999999999999999988761 2222233334444445556666666777777777999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hhHhHHHHHHHHHHHHHHH
Q 000521 353 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWS-LPFQIGVALYLL---YTQVKFAFVSGLAITILLI 428 (1446)
Q Consensus 353 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~-~pl~i~i~~~lL---~~~lg~a~l~~~~v~~~~~ 428 (1446)
.+|+|.++++...+.+...|++++.++.|++.+............ +++.+...+.++ .+.+++..+.+ .+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~---~~~~~ 166 (567)
T COG1132 90 DLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLI---LPLLA 166 (567)
T ss_pred HHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHH
Confidence 999999999999888888999999999999999987766432222 333333322222 22333333332 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 000521 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFF--WAT 506 (1446)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~--~~~ 506 (1446)
....++.++..+..++..+..++..+.+.|.++|++.||.|+.|+...++..+..++..+...+........... ...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555656688888888899999999999999999999999999877666665444444433322222222211 112
Q ss_pred HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCC
Q 000521 507 TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 586 (1446)
Q Consensus 507 ~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 586 (1446)
.-....++.++.+.+..+.++.|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++.++...+... +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~----~- 321 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD----P- 321 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC----C-
Confidence 22233456667777778889999999999999999999999999999999999999999999987442111000 0
Q ss_pred cccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEE
Q 000521 587 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1446)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~ 666 (1446)
.......|+++|++|+|+++ +++|+|+||++++||.++||||+||||||++++|+|+++|++|+|.+
T Consensus 322 --------~~~~~~~I~f~~vsf~y~~~-----~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 322 --------LKDTIGSIEFENVSFSYPGK-----KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred --------CCCCCCeEEEEEEEEEcCCC-----CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 01234569999999999742 34599999999999999999999999999999999999999999999
Q ss_pred eC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 667 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 667 ~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
+| +||||||+|+||++||+|||.+|++ .++++..++++.+++++.++.+|+|++|.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 87 5999999999999999999999987 588899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecC
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1446)
|||||++||||++++|+|++||||||+||+++++.|.+.+ .. +.++||+|+|+||++.+..||+|++|++|+|++.|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l-~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDAL-KK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHH-HH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999874 32 457789999999999999999999999999999999
Q ss_pred hhHHHhccccCcc
Q 000521 813 SADLAVSLYSGFW 825 (1446)
Q Consensus 813 ~~~l~~~~~~~~~ 825 (1446)
|+|++++++.+.+
T Consensus 547 h~eLl~~~g~y~~ 559 (567)
T COG1132 547 HEELLAKGGLYAR 559 (567)
T ss_pred HHHHHHcCCHHHH
Confidence 9999987665544
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=631.51 Aligned_cols=436 Identities=22% Similarity=0.338 Sum_probs=333.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCc--cCCCcEEEEe------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--MLTHGSIHAS------------ 667 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~--~~~~G~i~~~------------ 667 (1446)
++++|++++|.. ..+|+|+||++++|++++|+||||||||||+++|+|.. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLTKKFDG------KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEEEEECC------eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 357889988842 23599999999999999999999999999999999996 7999999875
Q ss_pred -----------C-----------------------eEEEEcCC-CCCCC-ccHHHHHhcCCC---CCh----hhHHHHHH
Q 000521 668 -----------G-----------------------SIAYVPQV-PWILS-GTIRDNILFGKN---YDP----QSYSETLK 704 (1446)
Q Consensus 668 -----------~-----------------------~i~yv~Q~-p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~ 704 (1446)
| .++|++|+ +.+++ .|++||+.++.. ++. ++..++++
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 28999997 56665 599999987421 221 34555666
Q ss_pred HhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceE
Q 000521 705 ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTR 783 (1446)
Q Consensus 705 ~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ 783 (1446)
.++++... .....+|||||||||+||||+..+|+++||||||++||+.+.+++.+. +..... .|+|+
T Consensus 155 ~~gl~~~~-----------~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tv 222 (520)
T TIGR03269 155 MVQLSHRI-----------THIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA-LEEAVKASGISM 222 (520)
T ss_pred HcCChhhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH-HHHHHHhcCcEE
Confidence 66664322 334568999999999999999999999999999999999999998775 332112 37899
Q ss_pred EEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccC
Q 000521 784 ILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSV 862 (1446)
Q Consensus 784 ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1446)
|+|||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------------------------------------------- 259 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------------------------------------------- 259 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-------------------------------------------
Confidence 999999999865 999999999998765543221000
Q ss_pred CcchhHHHHHHHHhcCcchhHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHH
Q 000521 863 SDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLC 942 (1446)
Q Consensus 863 ~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~ 942 (1446)
|. .
T Consensus 260 -------------------------~~---------------------------------~------------------- 262 (520)
T TIGR03269 260 -------------------------FM---------------------------------E------------------- 262 (520)
T ss_pred -------------------------HH---------------------------------h-------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHH
Q 000521 943 IFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVG 1022 (1446)
Q Consensus 943 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~ 1022 (1446)
T Consensus 263 -------------------------------------------------------------------------------- 262 (520)
T TIGR03269 263 -------------------------------------------------------------------------------- 262 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHH
Q 000521 1023 LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKE 1102 (1446)
Q Consensus 1023 ~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~ 1102 (1446)
...
T Consensus 263 --------------------------------------~~~--------------------------------------- 265 (520)
T TIGR03269 263 --------------------------------------GVS--------------------------------------- 265 (520)
T ss_pred --------------------------------------hch---------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1103 HVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTET 1182 (1446)
Q Consensus 1103 ~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~ 1182 (1446)
. .
T Consensus 266 --------------------------------------------~----------------------------------~ 267 (520)
T TIGR03269 266 --------------------------------------------E----------------------------------V 267 (520)
T ss_pred --------------------------------------------h----------------------------------h
Confidence 0 0
Q ss_pred HHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecC---CCCcccceeeEEEeCCcEEEEECCCCCCH
Q 000521 1183 EKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKP---SLPAALHDINFTIEGGTQVGIVGRTGAGK 1259 (1446)
Q Consensus 1183 e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~---~~~~vL~~isl~I~~GekvgIvGrTGSGK 1259 (1446)
+. .++ .+. ....++++|++++|+. +..++|+|+||+|++||++||+|+|||||
T Consensus 268 ~~-------------~~~-------~~~----~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGK 323 (520)
T TIGR03269 268 EK-------------ECE-------VEV----GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGK 323 (520)
T ss_pred cc-------------ccc-------cCC----CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCH
Confidence 00 000 000 1125999999999953 23469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEc-Ce---eCCCCC---hHhHhcceEEEeCCCCCCCC-cHHHhcCCC-C-CCChHHHHHHH
Q 000521 1260 SSILNALFRLTPICGGQILVD-GL---NIINTP---VRDLRGRFAVVPQSPFLFEG-SLRDNLDPF-H-MNDDLKIWSVL 1329 (1446)
Q Consensus 1260 STLl~~L~rl~~~~~G~I~ID-G~---di~~i~---~~~lR~~i~~VpQdp~lF~g-TIR~NLdp~-~-~~~d~ei~~aL 1329 (1446)
|||+++|.|+++|++|+|.++ |. ++...+ ...+|++++|+||++.+|+. |+++|+... . ....++.
T Consensus 324 STLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~---- 399 (520)
T TIGR03269 324 TTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA---- 399 (520)
T ss_pred HHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH----
Confidence 999999999999999999996 64 344332 23567789999999988875 999999631 1 1111110
Q ss_pred HHccHHHHHHhCCCch-----hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CC
Q 000521 1330 EKCHVKEEVEAVGLET-----FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KG 1402 (1446)
Q Consensus 1330 ~~~~L~~~i~~lgLdt-----~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~ 1402 (1446)
+....+.++.+|++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++.. .+
T Consensus 400 -~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g 478 (520)
T TIGR03269 400 -RMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478 (520)
T ss_pred -HHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 111223344445543 2455556799999999999999999999999999999999999999999998764 27
Q ss_pred cEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1403 MTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1403 ~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
.|||+|||+++.+.. ||||++|++|++++.|.+..++
T Consensus 479 ~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 516 (520)
T TIGR03269 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516 (520)
T ss_pred cEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 899999999999876 8999999999999999887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=571.75 Aligned_cols=523 Identities=23% Similarity=0.281 Sum_probs=419.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000521 281 GLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLY 360 (1446)
Q Consensus 281 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~ 360 (1446)
.++..+..+....|-.++-..++.+-..+.....+.++++++++.++.+++.....+..++.+.++|..|+..+++|..+
T Consensus 6 ~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~ 85 (559)
T COG4988 6 ALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAK 85 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666667677766666554433344555677788888899999999999999999999999999999999999
Q ss_pred CCccccCCCChhHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 361 VRLAERSEFSDGEIQTFMSVDTDRTVNLAN----SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIAN 436 (1446)
Q Consensus 361 l~~~~~~~~~~g~i~nlms~D~~~i~~~~~----~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~~~~~~~~~~~ 436 (1446)
++....+..++|+..+++..-+|.+...+. .....-..|+-+.++++++.+.-|+..++.+.++.+++ ..+++
T Consensus 86 ~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM---ilvg~ 162 (559)
T COG4988 86 LGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM---ILVGL 162 (559)
T ss_pred CChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 998888888899999999999999887543 33444567777888888888777766555554444433 34556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 437 LIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 512 (1446)
Q Consensus 437 ~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1446)
..++..+++++.-..-....-+.|+|+.++|.|+..+...++|.+ .|+.-|+.++-.-.-.+..-++.+.. +...
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls-iAlv 241 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS-IALV 241 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 666777788888888888899999999999999988777666654 56666666654322222223332222 2222
Q ss_pred HHHHHHHHHhC-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCC
Q 000521 513 LFTFGLFALMG-HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNG 591 (1446)
Q Consensus 513 ~~~f~~~~~~~-~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~ 591 (1446)
.+.+| +.+.+ ++++....+.++.+---+-.|+..+...+..-.++.++.+++..|++.|............
T Consensus 242 Av~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~------- 313 (559)
T COG4988 242 AVYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV------- 313 (559)
T ss_pred HHHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc-------
Confidence 23333 33455 6899999999999999999999999999999999999999999999877543311100000
Q ss_pred CccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---
Q 000521 592 LSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668 (1446)
Q Consensus 592 ~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--- 668 (1446)
...+...+..+|.+|.|+.. +++++|+||++++|++++|||+||||||||+++|+|+.+|++|+|.++|
T Consensus 314 ---~~~~~~ei~~~~l~~~y~~g-----~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l 385 (559)
T COG4988 314 ---ANEPPIEISLENLSFRYPDG-----KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL 385 (559)
T ss_pred ---ccCCCceeeecceEEecCCC-----CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc
Confidence 01233455666999999753 1459999999999999999999999999999999999999999999987
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ----------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ----------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
+++||+|+|.||++||||||+++++ .+++...++++..+|.+.++. |+|.+|++||+|.+|||||+||
T Consensus 386 ~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 386 RDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred cccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHH
Confidence 5999999999999999999999987 568899999999999999998 9999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
|+||||+++++++||||||||+||.++++.|.+. +.. +.++||+|+||||++.+..+|+|++|++|+++++|+|+++.
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~-l~~-l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQA-LQE-LAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHH-HHH-HHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHh
Confidence 9999999999999999999999999999999887 443 67789999999999999999999999999999999999998
Q ss_pred hccccCccc
Q 000521 818 VSLYSGFWS 826 (1446)
Q Consensus 818 ~~~~~~~~~ 826 (1446)
++++.+..+
T Consensus 543 ~~~~~y~~l 551 (559)
T COG4988 543 EKQGLYANL 551 (559)
T ss_pred hcCcHHHHH
Confidence 877666544
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=609.88 Aligned_cols=507 Identities=21% Similarity=0.213 Sum_probs=400.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 274 GYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMT 352 (1446)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~ 352 (1446)
++.++..+++.++..++....|++++.++|.+. +.........+++.++++.++..++.....+...+++.++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788889999999999999999999874 3222223334455555666777788888888899999999999999
Q ss_pred HHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HhhHhHHHHHHHHHHHHHHH
Q 000521 353 IIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYL---LYTQVKFAFVSGLAITILLI 428 (1446)
Q Consensus 353 ~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~l---L~~~lg~a~l~~~~v~~~~~ 428 (1446)
.+|+|.++++.....+.++|+++|.++.|++.+.+... .+..+....+.+++++.+ +.+.+++..+++++ +..
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~---l~~ 158 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP---LIP 158 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH
Confidence 99999999999988889999999999999999997654 355555444444333332 23334443333222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 429 PVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP 508 (1446)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~ 508 (1446)
.+..++.++..+..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++.-++..+...+..........+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23355677777888888899999999999999999999999999999888876644444433333333332222222211
Q ss_pred HHH--HHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCC
Q 000521 509 TLF--SLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS 586 (1446)
Q Consensus 509 ~~~--~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~ 586 (1446)
.+. .++.++.+.+..+.+|.+.+++++.+...+..|+..+...+..+.++.++++|+.++++.++.+.... ..+
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~- 314 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVT- 314 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCC-
Confidence 111 12234445555778999999999999999999999999999999999999999999997442111000 000
Q ss_pred cccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEE
Q 000521 587 YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1446)
Q Consensus 587 ~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~ 666 (1446)
......++++|++|+|+..+ +++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 315 ---------~~~~~~i~~~~v~f~y~~~~----~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 315 ---------AAPAPSLEFSGLSVAYPGRR----APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ---------CCCCCeEEEEEEEEECCCCC----cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 01124699999999997431 24699999999999999999999999999999999999999999999
Q ss_pred eC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 667 SG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 667 ~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
+| +++||+|+|++|++||||||.++.+ .++++..++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 87 4999999999999999999999864 678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEE
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 802 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l 802 (1446)
|||||++||||++++|++++||||||+||+++++.+++. +.. ..+++|+|+||||++.++.||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~-l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEA-LRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999999999887 444 45789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-64 Score=624.90 Aligned_cols=435 Identities=21% Similarity=0.302 Sum_probs=333.4
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~i~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDKAFPG------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEEEeCC------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 4789999998852 2359999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCCC-------Chh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 --SIAYVPQVPWILSG-TIRDNILFGKNY-------DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~-ti~~nI~~g~~~-------~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.++|++|+|.++.. |++||+.++... +.+ +..++++.+++.. .......+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~ 146 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELSIGE 146 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHH
Confidence 38999999987754 999999986421 221 2334444444432 1234556899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecCh
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 813 (1446)
|||++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|+++..|+.
T Consensus 147 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 147 QQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRV-IRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999999999988865 32212347899999999999865 999999999999876543
Q ss_pred hHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhh
Q 000521 814 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 893 (1446)
Q Consensus 814 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 893 (1446)
+++.. ++.
T Consensus 226 ~~~~~-----------------------------------------------------~~~------------------- 233 (501)
T PRK10762 226 ADLTE-----------------------------------------------------DSL------------------- 233 (501)
T ss_pred CcCCH-----------------------------------------------------HHH-------------------
Confidence 22100 000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973 (1446)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 973 (1446)
...+...
T Consensus 234 ------------------------~~~~~~~------------------------------------------------- 240 (501)
T PRK10762 234 ------------------------IEMMVGR------------------------------------------------- 240 (501)
T ss_pred ------------------------HHHhcCC-------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHH
Q 000521 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1053 (1446)
Q Consensus 974 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~ 1053 (1446)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000521 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1133 (1446)
Q Consensus 1054 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1133 (1446)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK10762 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCC
Q 000521 1134 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213 (1446)
Q Consensus 1134 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~w 1213 (1446)
.. . ..++. ...+
T Consensus 241 -------------~~-~----------------------------------------------~~~~~-----~~~~--- 252 (501)
T PRK10762 241 -------------KL-E----------------------------------------------DQYPR-----LDKA--- 252 (501)
T ss_pred -------------Cc-c----------------------------------------------ccccc-----cccC---
Confidence 00 0 00000 0000
Q ss_pred CCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-HhH
Q 000521 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDL 1292 (1446)
Q Consensus 1214 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~l 1292 (1446)
|..-.++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+
T Consensus 253 ~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 253 PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 0112488999974 37999999999999999999999999999999999999999999999999987664 346
Q ss_pred hcceEEEeCCC---CCCC-CcHHHhcCCCCC---------CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhH
Q 000521 1293 RGRFAVVPQSP---FLFE-GSLRDNLDPFHM---------NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQ 1358 (1446)
Q Consensus 1293 R~~i~~VpQdp---~lF~-gTIR~NLdp~~~---------~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQ 1358 (1446)
|++++|+||+| .+|. -|+++|+..... .+.++. +....+.++.+|++ .........|||||
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 78899999997 3555 599999964210 111111 11233444555663 34556666899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccc
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~ 1436 (1446)
|||++||||++.+|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+.+.
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 999999999999999999999999999999999999998764 47899999999999875 8999999999999988887
Q ss_pred hh
Q 000521 1437 RY 1438 (1446)
Q Consensus 1437 ~~ 1438 (1446)
.+
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 65
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=560.26 Aligned_cols=530 Identities=20% Similarity=0.269 Sum_probs=446.2
Q ss_pred chHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 263 PSLVRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKL 342 (1446)
Q Consensus 263 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~ 342 (1446)
.....+.+..++..|+..+++..+.+++.++.|+++-++.|.+-.+.+......+.+.....|+++.+++....+...|+
T Consensus 11 ~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Ri 90 (580)
T COG4618 11 KNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVRI 90 (580)
T ss_pred CchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888999999999999999999999999999998877777778888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHhHHHH
Q 000521 343 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-----NSFHDAWSLPFQIGVALYLLYTQVKFAF 417 (1446)
Q Consensus 343 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~-----~~~~~~~~~pl~i~i~~~lL~~~lg~a~ 417 (1446)
+.++...|...||.-+++.+..........+.+ .|.+.+..+. ..+.+..+.|+.+++ +|+++..+|+.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v-~fl~Hp~lG~~a 165 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAV-IFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999976554433222222222 3666666654 357788889999887 789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 418 VSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLD 497 (1446)
Q Consensus 418 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~ 497 (1446)
++|.++++.+..+|-++++ +..++-.+..-+|....+..++|..+|+.+|+.+...+++.+....-++...+..-..
T Consensus 166 ~~ga~iLv~la~ln~~~t~---~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERATR---KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999888888877766665 4566777888899999999999999999999999999999888776666655444333
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Q 000521 498 AWCVFFWATTPT--LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYK 575 (1446)
Q Consensus 498 ~~~~~~~~~~~~--~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~ 575 (1446)
.....+.-..-. -+.++..|+|++.++++|+|.++++..+......|+......+.++..|+.|.+|++++|......
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 322222211111 134567888999999999999999999999999999999999999999999999999999643221
Q ss_pred hhhhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhc
Q 000521 576 HELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1446)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg 655 (1446)
++.. .. +.++..+.++++++.-|. ..+++++|+||++++||.++|+||||||||||.++|.|
T Consensus 323 ~~~m---~L-----------P~P~g~L~Ve~l~~~PPg----~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 323 AERM---PL-----------PAPQGALSVERLTAAPPG----QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred cCCC---CC-----------CCCCceeeEeeeeecCCC----CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHc
Confidence 1111 11 234567889999986432 22456999999999999999999999999999999999
Q ss_pred CccCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHh-cCCCCChhhHHHHHHHhcchHHHhhccCCCcc
Q 000521 656 EMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKACTLDVDISLMVGGDMA 721 (1446)
Q Consensus 656 ~~~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~-~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t 721 (1446)
-.+|.+|.|++|| +|||.||+..||.|||+|||. |+.+.|+++.-++.++.+.++-|..+|+|++|
T Consensus 385 ~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT 464 (580)
T COG4618 385 IWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDT 464 (580)
T ss_pred ccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccC
Confidence 9999999999987 699999999999999999995 88888999999999999999999999999999
Q ss_pred cccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEE
Q 000521 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801 (1446)
Q Consensus 722 ~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~ 801 (1446)
.||+.|.+|||||||||+||||+|.+|.+++||||-|+||.+-+..+.+. +..-..+|.|+|+||||++.+..+|+|.+
T Consensus 465 ~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~A-i~~~k~rG~~vvviaHRPs~L~~~Dkilv 543 (580)
T COG4618 465 RIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA-ILAAKARGGTVVVIAHRPSALASVDKILV 543 (580)
T ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHH-HHHHHHcCCEEEEEecCHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999988888766 54446678899999999999999999999
Q ss_pred EeCCEEEEecChhHHHhc
Q 000521 802 MDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 802 l~~G~i~~~g~~~~l~~~ 819 (1446)
|++|++...|+.+|+.++
T Consensus 544 l~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 544 LQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCChHHhcCCHHHHHHH
Confidence 999999999999998765
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=604.91 Aligned_cols=533 Identities=18% Similarity=0.214 Sum_probs=413.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348 (1446)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~ 348 (1446)
.++.+++.++..+++.++..++..+.|++++.++|.+...... ..+++.+++..++..+......+...++..+++.
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRRA 89 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999999999977542211 1111122223333444444455667788888999
Q ss_pred HHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHhhHhHHHHHHHHHHH
Q 000521 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALY---LLYTQVKFAFVSGLAIT 424 (1446)
Q Consensus 349 ~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~---lL~~~lg~a~l~~~~v~ 424 (1446)
.+...+|+|.++++...+.+.++|++++.++.|++.+..... .+..+...++.++++++ .+.+.+++.++ +++
T Consensus 90 ~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l---~~~ 166 (585)
T TIGR01192 90 TLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM---VLG 166 (585)
T ss_pred HHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 999999999999999998888999999999999999986543 33344444444433322 22233333322 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1446)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1446)
++...+..++.+++.+..++..+..++..+.+.|.++|+++||.+|.|+.+.+++++..++-.+...+.....+....+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (585)
T TIGR01192 167 ILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLN 246 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344456677777788888888889999999999999999999999998888877755433333333222222222221
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000521 505 ATT--PTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1446)
Q Consensus 505 ~~~--~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1446)
... ...+.++.+|.|.+.++.++.+.+++++.++..+..|+..+...+..+.++..+.+|+.++++.++..+....
T Consensus 247 ~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~-- 324 (585)
T TIGR01192 247 RMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD-- 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc--
Confidence 111 1223456678888888899999999999999999999999999999999999999999999975432111000
Q ss_pred CCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000521 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G 662 (1446)
.+. .+.....++++|++|+|+.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|
T Consensus 325 -~~~--------~~~~~~~i~~~~v~~~y~~~-----~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 390 (585)
T TIGR01192 325 -APE--------LPNVKGAVEFRHITFEFANS-----SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG 390 (585)
T ss_pred -CCC--------CCCCCCeEEEEEEEEECCCC-----CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC
Confidence 000 01123469999999999632 2359999999999999999999999999999999999999999
Q ss_pred EEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 663 ~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
+|.++| .++||+|+|++|++|++|||.++.+ .++++..++++.+++++.+..+|+|++|.+|++|.
T Consensus 391 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~ 470 (585)
T TIGR01192 391 QILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 (585)
T ss_pred EEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCC
Confidence 999876 4899999999999999999999864 56777888999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
+||||||||++||||++++|+++|||||||+||+++++.+.+. +.. ..+++|+|+|||+++.++.||+|++|++|+++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~-l~~-~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~ 548 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNA-IDA-LRKNRTTFIIAHRLSTVRNADLVLFLDQGRLI 548 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH-HHH-HhCCCEEEEEEcChHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999876 433 45689999999999999999999999999999
Q ss_pred EecChhHHHhccccCcc
Q 000521 809 WIGSSADLAVSLYSGFW 825 (1446)
Q Consensus 809 ~~g~~~~l~~~~~~~~~ 825 (1446)
+.|+++++.++.+.+.+
T Consensus 549 ~~g~~~~l~~~~~~y~~ 565 (585)
T TIGR01192 549 EKGSFQELIQKDGRFYK 565 (585)
T ss_pred EECCHHHHHHCCChHHH
Confidence 99999999876654443
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=621.88 Aligned_cols=445 Identities=22% Similarity=0.296 Sum_probs=330.1
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC--CCcEEEEeC-----------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML--THGSIHASG----------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~--~~G~i~~~~----------- 668 (1446)
++++|++++|.. .++|+|+||++++|++++|+||||||||||+++|.|+.+| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFGG------VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeCC------eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 578899998842 2359999999999999999999999999999999999987 799999875
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 ---SIAYVPQVPWILSG-TIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~-ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.++|++|+|.++.. |++||+.++..+ +. ++.+++++.+++.... ......+||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG 145 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGG 145 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHH
Confidence 38999999987765 999999886431 11 1233344444432111 12235689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
||||++||||++.+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 146 ~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 224 (500)
T TIGR02633 146 QQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDI-IRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKD 224 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecC
Confidence 99999999999999999999999999999999998875 33212357899999999999875 99999999999875443
Q ss_pred hhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhh
Q 000521 813 SADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFS 892 (1446)
Q Consensus 813 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~ 892 (1446)
.+++. . . . ..
T Consensus 225 ~~~~~------------------------------------------------~-----~--------~--~~------- 234 (500)
T TIGR02633 225 MSTMS------------------------------------------------E-----D--------D--II------- 234 (500)
T ss_pred cccCC------------------------------------------------H-----H--------H--HH-------
Confidence 11100 0 0 0 00
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 893 GWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHN 972 (1446)
Q Consensus 893 g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~ 972 (1446)
.....
T Consensus 235 --------------------------~~~~~------------------------------------------------- 239 (500)
T TIGR02633 235 --------------------------TMMVG------------------------------------------------- 239 (500)
T ss_pred --------------------------HHHhC-------------------------------------------------
Confidence 00000
Q ss_pred HHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHH
Q 000521 973 TLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQ 1052 (1446)
Q Consensus 973 ~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~ 1052 (1446)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T TIGR02633 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000521 1053 FFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFI 1132 (1446)
Q Consensus 1053 ~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~ 1132 (1446)
+
T Consensus 240 -----------------~-------------------------------------------------------------- 240 (500)
T TIGR02633 240 -----------------R-------------------------------------------------------------- 240 (500)
T ss_pred -----------------c--------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCC
Q 000521 1133 ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPD 1212 (1446)
Q Consensus 1133 ~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~ 1212 (1446)
. .. . ..+.+. .+
T Consensus 241 --------------~--~~---~-----------------------------------------~~~~~~-----~~--- 252 (500)
T TIGR02633 241 --------------E--IT---S-----------------------------------------LYPHEP-----HE--- 252 (500)
T ss_pred --------------c--cc---c-----------------------------------------cccccc-----cC---
Confidence 0 00 0 000000 00
Q ss_pred CCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEEcCeeCCCCC-h
Q 000521 1213 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIINTP-V 1289 (1446)
Q Consensus 1213 wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-~~G~I~IDG~di~~i~-~ 1289 (1446)
+.+-.++++|++++|+.+ ...+|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.++|.++...+ .
T Consensus 253 -~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~ 331 (500)
T TIGR02633 253 -IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPA 331 (500)
T ss_pred -CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHH
Confidence 011258999999999432 23699999999999999999999999999999999999995 8999999999986544 3
Q ss_pred HhHhcceEEEeCCC---CCCC-CcHHHhcCCCCC--CCh-HHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHH
Q 000521 1290 RDLRGRFAVVPQSP---FLFE-GSLRDNLDPFHM--NDD-LKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp---~lF~-gTIR~NLdp~~~--~~d-~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQr 1361 (1446)
..+|++++++||++ .+|+ -|+++|+..... ... ..+...-.+....+.++.+|+.. ........||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 56788999999996 3666 499999975310 100 00000001112333444445532 2344455799999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccc
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~ 1436 (1446)
++||||++++|++|||||||++||..+.+.+.+.|++.. ++.|||+|||+++.+.. ||+|++|++|+++......
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999887753 47899999999999875 8999999999998766443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-63 Score=618.07 Aligned_cols=447 Identities=21% Similarity=0.348 Sum_probs=339.4
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|.. +.+|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 10 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 83 (510)
T PRK15439 10 PLLCARSISKQYSG------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA 83 (510)
T ss_pred ceEEEEeEEEEeCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH
Confidence 35899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCCC---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 669 ---SIAYVPQVPWILSG-TIRDNILFGKNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~-ti~~nI~~g~~~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
.+||++|++.++.. |++||+.++.... +++..++++..++... ......+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 84 HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred HhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHH
Confidence 38999999987765 9999999875322 2345556666655422 2345568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHhcc
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVSL 820 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~~ 820 (1446)
|||+.+|+++||||||++||+...+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD 231 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH
Confidence 999999999999999999999999998876 33212347899999999998765 9999999999999887765531100
Q ss_pred ccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhhHHHHHHH
Q 000521 821 YSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITLVI 900 (1446)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~~~ 900 (1446)
. ... +.
T Consensus 232 ------------------------------------------------~---~~~------------~~----------- 237 (510)
T PRK15439 232 ------------------------------------------------I---IQA------------IT----------- 237 (510)
T ss_pred ------------------------------------------------H---HHH------------Hh-----------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000521 901 CLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVN 980 (1446)
Q Consensus 901 ~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~ 980 (1446)
.. . ...
T Consensus 238 ----------------------~~---~-~~~------------------------------------------------ 243 (510)
T PRK15439 238 ----------------------PA---A-REK------------------------------------------------ 243 (510)
T ss_pred ----------------------Cc---c-ccc------------------------------------------------
Confidence 00 0 000
Q ss_pred CCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 981 APVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSR 1060 (1446)
Q Consensus 981 ~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr 1060 (1446)
T Consensus 244 -------------------------------------------------------------------------------- 243 (510)
T PRK15439 244 -------------------------------------------------------------------------------- 243 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000521 1061 ELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA 1140 (1446)
Q Consensus 1061 ~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~ 1140 (1446)
+.+.. .+
T Consensus 244 ~~~~~------------------------------------------~~------------------------------- 250 (510)
T PRK15439 244 SLSAS------------------------------------------QK------------------------------- 250 (510)
T ss_pred ccccc------------------------------------------cc-------------------------------
Confidence 00000 00
Q ss_pred HHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEE
Q 000521 1141 VIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIE 1220 (1446)
Q Consensus 1141 v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~ 1220 (1446)
. . . ..+... ...+ +..-.++
T Consensus 251 ~-----~--~----------------------------------------------~~~~~~----~~~~---~~~~~l~ 270 (510)
T PRK15439 251 L-----W--L----------------------------------------------ELPGNR----RQQA---AGAPVLT 270 (510)
T ss_pred c-----c--c----------------------------------------------cccccc----cccC---CCCceEE
Confidence 0 0 0 000000 0000 0112489
Q ss_pred EEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh-HhcceEEE
Q 000521 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFAVV 1299 (1446)
Q Consensus 1221 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~~V 1299 (1446)
++|++. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|++++|+
T Consensus 271 ~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 343 (510)
T PRK15439 271 VEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYL 343 (510)
T ss_pred EeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEEC
Confidence 999983 2699999999999999999999999999999999999999999999999998776654 46789999
Q ss_pred eCCC---CCCCC-cHHHhcCCC--C---CC-ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1300 PQSP---FLFEG-SLRDNLDPF--H---MN-DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1300 pQdp---~lF~g-TIR~NLdp~--~---~~-~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
||++ .+|.. |+++|+..+ . .. ...+. +....+.++.+|++ .........||||||||++||||+
T Consensus 344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al 418 (510)
T PRK15439 344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCL 418 (510)
T ss_pred CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHH
Confidence 9996 36654 999998432 1 00 11111 11233445555775 455666678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
+.+|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.+ ||||++|++|++++.+++..
T Consensus 419 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 419 EASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred hhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999998753 48999999999999976 89999999999999887753
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-62 Score=612.61 Aligned_cols=199 Identities=19% Similarity=0.287 Sum_probs=167.1
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| ++++
T Consensus 318 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 318 NALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred ceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 36999999999964 3699999999999999999999999999999999999999999999987 3579
Q ss_pred EEEeCCCC--CCC-CcHHHhcCCCC--CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1297 AVVPQSPF--LFE-GSLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1297 ~~VpQdp~--lF~-gTIR~NLdp~~--~~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+|+||++. +++ .|+++|+..+. ...++++.++|+.. |+. ........+||||||||++||||+++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL---------LFSQDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc---------CCChhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 99999984 443 59999986432 11233445555554 442 23445566899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEE-EEeccchhh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV-CISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vv-E~~~~~~~~ 1439 (1446)
+|+||||||||++||..+.+.+.+.|++. +.|||+|||+++.+.. ||||++|++|+++ +.|.+..++
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 99999999999999999999999999875 4699999999999876 8999999999998 667776543
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=614.74 Aligned_cols=437 Identities=21% Similarity=0.285 Sum_probs=331.2
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+. ..+|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (501)
T PRK11288 4 YLSFDGIGKTFPG------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAAL 77 (501)
T ss_pred eEEEeeeEEEECC------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHH
Confidence 4789999999852 2359999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC------CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 --SIAYVPQVPWILSG-TIRDNILFGKN------YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~-ti~~nI~~g~~------~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.++|++|+|.+++. |++||+.++.. .+. ++..++++.+++... ......+||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~ 146 (501)
T PRK11288 78 AAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-----------PDTPLKYLSIGQR 146 (501)
T ss_pred hCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-----------cCCchhhCCHHHH
Confidence 38999999988765 99999988631 121 233445555544321 2345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 814 (1446)
||++||||+..+|+++||||||++||+.+.+.+.+.+ .....+|+|+|++||+++.+.. ||+|++|++|+++..++..
T Consensus 147 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (501)
T PRK11288 147 QMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI-RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDM 225 (501)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHH-HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999988763 3212347899999999999765 9999999999987433200
Q ss_pred HHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhhH
Q 000521 815 DLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGW 894 (1446)
Q Consensus 815 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~ 894 (1446)
+ . . . .+. +.
T Consensus 226 ~-------------~---------------------------~-------~------~~~-------------~~----- 234 (501)
T PRK11288 226 A-------------Q---------------------------V-------D------RDQ-------------LV----- 234 (501)
T ss_pred c-------------c---------------------------C-------C------HHH-------------HH-----
Confidence 0 0 0 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 895 FITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTL 974 (1446)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~l 974 (1446)
..+...
T Consensus 235 ------------------------~~~~~~-------------------------------------------------- 240 (501)
T PRK11288 235 ------------------------QAMVGR-------------------------------------------------- 240 (501)
T ss_pred ------------------------HHhcCC--------------------------------------------------
Confidence 000000
Q ss_pred HHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHH
Q 000521 975 LTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFF 1054 (1446)
Q Consensus 975 l~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~ 1054 (1446)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000521 1055 YRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIIS 1134 (1446)
Q Consensus 1055 y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~ 1134 (1446)
T Consensus 241 -------------------------------------------------------------------------------- 240 (501)
T PRK11288 241 -------------------------------------------------------------------------------- 240 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCC
Q 000521 1135 FIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWP 1214 (1446)
Q Consensus 1135 ~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp 1214 (1446)
.. .. . ...++. + +
T Consensus 241 ------------~~-~~----------------------------------------~---~~~~~~--------~---~ 253 (501)
T PRK11288 241 ------------EI-GD----------------------------------------I---YGYRPR--------P---L 253 (501)
T ss_pred ------------Cc-cc----------------------------------------c---cccccc--------C---C
Confidence 00 00 0 000000 0 0
Q ss_pred CCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC-hHhHh
Q 000521 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLR 1293 (1446)
Q Consensus 1215 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR 1293 (1446)
..-.++++|++++ .+++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .+..|
T Consensus 254 ~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 327 (501)
T PRK11288 254 GEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIR 327 (501)
T ss_pred CCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHh
Confidence 1124889999742 4899999999999999999999999999999999999999999999999987543 34567
Q ss_pred cceEEEeCCCC---CCC-CcHHHhcCCCCC-C--------ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHH
Q 000521 1294 GRFAVVPQSPF---LFE-GSLRDNLDPFHM-N--------DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQR 1359 (1446)
Q Consensus 1294 ~~i~~VpQdp~---lF~-gTIR~NLdp~~~-~--------~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQr 1359 (1446)
++++|+||+|. +|+ .|+.+|+..... . ...+ ++....+.++.+|++ ........+||||||
T Consensus 328 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 328 AGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRW-----EAENADRFIRSLNIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHH-----HHHHHHHHHHhcCcccCCccCccccCCHHHH
Confidence 89999999973 554 699999864311 0 1100 011123344445663 334555568999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1360 Qrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
||++||||++.+|++|||||||++||..+.+.+.+.|++.. .+.|||+|||+++.+.. ||+|++|++|++++.|++..
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999997754 47899999999999865 89999999999999987764
Q ss_pred h
Q 000521 1438 Y 1438 (1446)
Q Consensus 1438 ~ 1438 (1446)
+
T Consensus 483 ~ 483 (501)
T PRK11288 483 A 483 (501)
T ss_pred C
Confidence 3
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-61 Score=658.75 Aligned_cols=535 Identities=18% Similarity=0.187 Sum_probs=382.4
Q ss_pred hHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 961 (1446)
Q Consensus 882 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 961 (1446)
.+..+..++..++..+... +..++...+...+++.++...+.............|+.++++..++..++.....+....
T Consensus 289 ~~l~~~l~~~~~~~~~~~~-~~~i~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 367 (1495)
T PLN03232 289 PWLLRALNNSLGGRFWLGG-IFKIGHDLSQFVGPVILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGVLCESQYFQNVGR 367 (1495)
T ss_pred chHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555444333 334556666666777777665533211111111112222222222222222112222356
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHH
Q 000521 962 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1041 (1446)
Q Consensus 962 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1041 (1446)
.+.+....+...+++++++.|..++++.++|+++||+++|++.+++... .+..+....+.++..++++.....+..++.
T Consensus 368 ~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~ 446 (1495)
T PLN03232 368 VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLYQQLGVASLFG 446 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6777778888899999999999999999999999999999999998753 333333333333332222222111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000521 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1121 (1446)
Q Consensus 1042 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1446)
+++++++..+..++.+..+..++.....+....+.+.|.++|+++||+|+||+.+.+++.+..+...+..........+.
T Consensus 447 ~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~ 526 (1495)
T PLN03232 447 SLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFN 526 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112221122223333333333334445556788999999999999999999999999887776665555443333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCcc
Q 000521 1122 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1201 (1446)
Q Consensus 1122 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e 1201 (1446)
......... ++.++.+.+.... .+..++|.+..++++...+..++..+...+..+..+..|.+|+.++++.+++
T Consensus 527 ~~~~~~~~~-~~~~~~fg~~~v~-----~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~ 600 (1495)
T PLN03232 527 SFILNSIPV-VVTLVSFGVFVLL-----GGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEER 600 (1495)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 221111111 1111111111111 2345788888888899999999999999999999999999999999986654
Q ss_pred ccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEc
Q 000521 1202 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1446)
Q Consensus 1202 ~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1446)
.... .+ +..+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|++|.+.
T Consensus 601 ~~~~--~~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 601 ILAQ--NP-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred cccc--cC-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 2111 11 111234679999999999753 35799999999999999999999999999999999999999999773
Q ss_pred CeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhH
Q 000521 1281 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1358 (1446)
Q Consensus 1281 G~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQ 1358 (1446)
.+|++|+||||+|++|+|||||||.++.++++++++++++.|++.++++.+ |+||.|||+|.+|||||
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 368999999999999999999999999889999999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccch
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~I-q~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|||||||||++++|+|+|||||||+||++|++.| +++++...+++|+|+||||++++..||+|++|++|+++|.|++.+
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~e 825 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAE 825 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999866 566777778999999999999999999999999999999999876
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
+.
T Consensus 826 L~ 827 (1495)
T PLN03232 826 LS 827 (1495)
T ss_pred HH
Confidence 53
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-60 Score=639.80 Aligned_cols=217 Identities=22% Similarity=0.341 Sum_probs=183.1
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcc
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1295 (1446)
...|+++|++++|+....++|+|+||+|++||++||+|++|||||||+++|.|+.+|++|+|.++|.++.+ +....|++
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 34699999999997533579999999999999999999999999999999999999999999999999975 45678899
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
|||+||++.+++. |+||||..+. ..+++++.+. ..+.++.+||+.........||||||||+++||||+.+
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~ 2088 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGC 2088 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999998875 9999996532 1222222211 12233334555445555567999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|+||+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|+++.+
T Consensus 2089 P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2089 PPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999998753 58999999999999875 999999999999999999865
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=601.72 Aligned_cols=462 Identities=18% Similarity=0.231 Sum_probs=347.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhh
Q 000521 949 SFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAV 1028 (1446)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~ 1028 (1446)
.++.++..+.....+.+...+++.++++++++.|+++|++.++|++++|+++|++.+...+. .+..++..++.+++.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~ 140 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAA 140 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44556677778888999999999999999999999999999999999999999999987544 34555666666677777
Q ss_pred hHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcH---HHHHHHHHHHHH
Q 000521 1029 VLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSE---DYFMAKFKEHVV 1105 (1446)
Q Consensus 1029 ~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e---~~~~~~~~~~~d 1105 (1446)
++.+.+|.++++++..+.+...+..+..+..+...+...+..+.+.+++.|.++|+++++ ++.+ +.+.+++.+..+
T Consensus 141 ~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~ 219 (547)
T PRK10522 141 YLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQ 219 (547)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHH
Confidence 777777776665544444333333333333333333334556778899999999999995 5443 466777777776
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 1106 LYQRTSYSELTASLWLSLRLQLLAAFI-ISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEK 1184 (1446)
Q Consensus 1106 ~~~~~~~~~~~~~~wl~~~l~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~ 1184 (1446)
...+..+...... .....+..++ ....++..+... .. ...+.+.++....+...+..++..+...+.++..
T Consensus 220 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 291 (547)
T PRK10522 220 EYRHHIIRADTFH----LSAVNWSNIMMLGAIGLVFYMAN--SL--GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLS 291 (547)
T ss_pred HHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH--Hh--hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665444332211 1111111111 111111111111 00 1112333333334444566788899999999999
Q ss_pred HhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHH
Q 000521 1185 EMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN 1264 (1446)
Q Consensus 1185 ~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~ 1264 (1446)
...+.+|+.++.+.++|+......+ -|..+.|+|+||+|+|++ .+++|+|+||+|+|||++||+|+||||||||++
T Consensus 292 ~~~a~~ri~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ 367 (547)
T PRK10522 292 AQVAFNKLNKLALAPYKAEFPRPQA---FPDWQTLELRNVTFAYQD-NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAM 367 (547)
T ss_pred HHHHHHHHHHHhccccccccccccc---cCcCceEEEEEEEEEeCC-CCeEEecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999976554321111111 122367999999999974 356999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCc
Q 000521 1265 ALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLE 1344 (1446)
Q Consensus 1265 ~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLd 1344 (1446)
+|.|+++|++|+|.+||+|+++++.+++|+++++|||||.+|+||+++| ....+|++++++++++++.+.+.
T Consensus 368 ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~----- 439 (547)
T PRK10522 368 LLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLE----- 439 (547)
T ss_pred HHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhh-----
Confidence 9999999999999999999999999999999999999999999999999 23567788888888877655433
Q ss_pred hhhhc---CCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcC
Q 000521 1345 TFVKE---SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMD 1419 (1446)
Q Consensus 1345 t~v~e---~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~D 1419 (1446)
.++ +|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+.. +++|+|+||||++++..||
T Consensus 440 --~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 440 --LEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred --ccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 222 378999999999999999999999999999999999999999999987654 4899999999999999999
Q ss_pred EEEEEeCCEEEEEec
Q 000521 1420 EILILDHGHLVCISF 1434 (1446)
Q Consensus 1420 rIlvl~~G~vvE~~~ 1434 (1446)
+|++|++|+++|.+.
T Consensus 518 ~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 518 RLLEMRNGQLSELTG 532 (547)
T ss_pred EEEEEECCEEEEecC
Confidence 999999999999754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=654.26 Aligned_cols=532 Identities=18% Similarity=0.177 Sum_probs=377.9
Q ss_pred HhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 883 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFG 962 (1446)
Q Consensus 883 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 962 (1446)
+..+..++..++.++.. ++..++..++...+++.++...+.............++.++++..++..+...-..+.....
T Consensus 290 ~l~~~l~~~~~~~~~~~-~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 368 (1622)
T PLN03130 290 WLLRALNNSLGGRFWLG-GFFKIGNDLSQFVGPLLLNLLLESMQNGEPAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRV 368 (1622)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555443332 23445555666666777766554322111111111111111111111111111111123456
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHH
Q 000521 963 SLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLV 1042 (1446)
Q Consensus 963 ~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 1042 (1446)
+.+....+...+++++++.|..++++.++|+++|++++|++.+++.... +..+....+.++..++++.....+..++.+
T Consensus 369 ~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~ 447 (1622)
T PLN03130 369 GFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVASLIGS 447 (1622)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888999999999999999999999999999999999987643 333333333333333332222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000521 1043 PFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLS 1122 (1446)
Q Consensus 1043 pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~ 1122 (1446)
+++++...++.++.+..+..++.....+....+.+.|.++|+++||+|+||+.|.+++.+..+...+..........+..
T Consensus 448 ~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~ 527 (1622)
T PLN03130 448 LMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNS 527 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333333333334444444556667889999999999999999999999998876665544333322222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccc
Q 000521 1123 LRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202 (1446)
Q Consensus 1123 ~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~ 1202 (1446)
....... +++.++.+...... .+..++|.+..++++...+..++..+...+.++..+.++.+|+.++++.+++.
T Consensus 528 ~~~~~~~-~~v~~~~fg~~~~~-----~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 528 FILNSIP-VLVTVVSFGVFTLL-----GGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHH-HHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 2111111 11111111111111 23467888888888888888999999999999999999999999999765432
Q ss_pred cccCCCCCCCCCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEEc
Q 000521 1203 LCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-GQILVD 1280 (1446)
Q Consensus 1203 ~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~-G~I~ID 1280 (1446)
... . ++ .-+..+.|+|+|++|+|+++ .+++|+|+||+|++||+++|||+||||||||+++|+|+++|.+ |+|.+
T Consensus 602 ~~~-~-~~-~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 602 LLP-N-PP-LEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred ccc-C-Cc-ccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 111 1 11 11224579999999999753 3579999999999999999999999999999999999999999 99974
Q ss_pred CeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhH
Q 000521 1281 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1358 (1446)
Q Consensus 1281 G~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQ 1358 (1446)
|++|+||||+|++|+|||||||.++.++++++++++++.|+|.++++.+ |++|.|||+|.+|||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQ 745 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQ 745 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHH
Confidence 7899999999999999999999999889999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccch
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASIL-QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~I-q~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
||||+||||++++|+|+|||||||+||+++++.| +++++...+++|+|+||||++.+..||+|++|++|+|+|.|++..
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~e 825 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEE 825 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999866 677887778999999999999999999999999999999999876
Q ss_pred h
Q 000521 1438 Y 1438 (1446)
Q Consensus 1438 ~ 1438 (1446)
+
T Consensus 826 L 826 (1622)
T PLN03130 826 L 826 (1622)
T ss_pred H
Confidence 5
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-62 Score=610.50 Aligned_cols=432 Identities=22% Similarity=0.317 Sum_probs=324.9
Q ss_pred EecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------eE
Q 000521 605 QDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------------SI 670 (1446)
Q Consensus 605 ~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------------~i 670 (1446)
+|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .+
T Consensus 2 ~nl~~~~~~------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 75 (491)
T PRK10982 2 SNISKSFPG------VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGI 75 (491)
T ss_pred CceEEEeCC------EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 466777742 2359999999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCC-ccHHHHHhcCCC------CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 671 AYVPQVPWILS-GTIRDNILFGKN------YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 671 ~yv~Q~p~l~~-~ti~~nI~~g~~------~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
+|++|++.++. .|++||+.++.. .+.+ +.+++++.+++. ........+|||||||||+
T Consensus 76 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv~ 144 (491)
T PRK10982 76 SMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-----------IDPRAKVATLSVSQMQMIE 144 (491)
T ss_pred EEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-----------CCccCchhhCCHHHHHHHH
Confidence 99999998765 599999987631 1221 222333333332 2234456789999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||||+..+|+++||||||++||+.+.+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 223 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI-IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTM 223 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCH
Confidence 99999999999999999999999999999876 33212357899999999998765 99999999999987665322100
Q ss_pred ccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhhHHHHH
Q 000521 819 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 898 (1446)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 898 (1446)
.+. .
T Consensus 224 -----------------------------------------------------~~~-------~---------------- 227 (491)
T PRK10982 224 -----------------------------------------------------DKI-------I---------------- 227 (491)
T ss_pred -----------------------------------------------------HHH-------H----------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 899 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 978 (1446)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 978 (1446)
..+..
T Consensus 228 --------------------~~~~~------------------------------------------------------- 232 (491)
T PRK10982 228 --------------------AMMVG------------------------------------------------------- 232 (491)
T ss_pred --------------------HHHhC-------------------------------------------------------
Confidence 00000
Q ss_pred hcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 979 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058 (1446)
Q Consensus 979 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~ 1058 (1446)
T Consensus 233 -------------------------------------------------------------------------------- 232 (491)
T PRK10982 233 -------------------------------------------------------------------------------- 232 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000521 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138 (1446)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1138 (1446)
+
T Consensus 233 -----------~-------------------------------------------------------------------- 233 (491)
T PRK10982 233 -----------R-------------------------------------------------------------------- 233 (491)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCcc
Q 000521 1139 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1218 (1446)
Q Consensus 1139 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1218 (1446)
. .. + ..+++. .+ +.+..
T Consensus 234 --------~--~~---------------------------------------~-----~~~~~~-----~~----~~~~~ 250 (491)
T PRK10982 234 --------S--LT---------------------------------------Q-----RFPDKE-----NK----PGEVI 250 (491)
T ss_pred --------C--cc---------------------------------------c-----cccccc-----CC----CCCcE
Confidence 0 00 0 000000 00 11125
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH-hHhcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR-DLRGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~-~lR~~i~ 1297 (1446)
|+++|++++| +++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 251 i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 251 LEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 8999999975 2599999999999999999999999999999999999999999999999999876654 4577899
Q ss_pred EEeCCCC---CCC-CcHHHh-----cCCCCC----CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHH
Q 000521 1298 VVPQSPF---LFE-GSLRDN-----LDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1298 ~VpQdp~---lF~-gTIR~N-----Ldp~~~----~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~ 1363 (1446)
|+||++. +|+ .|+++| +..... .+..+.. ....+.++.+|+. .........||||||||++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 401 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVI 401 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhcCccCCCcccccccCCcHHHHHHH
Confidence 9999963 565 477766 321111 1111111 1123344444553 2345556689999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccc
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~ 1436 (1446)
||||++++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.. ||||++|++|+++..+++.
T Consensus 402 la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 402 IGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 9999999999999999999999999999999997653 48999999999999865 8999999999999777654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-62 Score=608.12 Aligned_cols=443 Identities=19% Similarity=0.238 Sum_probs=329.8
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|+. ..+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 4 l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~ 77 (490)
T PRK10938 4 LQISQGTFRLSD------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQK 77 (490)
T ss_pred EEEEeEEEEcCC------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHH
Confidence 788999999852 1259999999999999999999999999999999999999999998764
Q ss_pred eEEEEcCCCCC---------CCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 669 SIAYVPQVPWI---------LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 ~i~yv~Q~p~l---------~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
.++|++|+|.+ ++.|++||+.++.. ++++.+++++..+++... .....+||||||||++
T Consensus 78 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 145 (490)
T PRK10938 78 LVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALL-----------DRRFKYLSTGETRKTL 145 (490)
T ss_pred HhceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhh-----------hCCcccCCHHHHHHHH
Confidence 27999998753 14599999876532 345566777777665322 3455689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||||+..+|+++||||||++||+...+++.+.+ .....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l-~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELL-ASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999988763 3212347899999999998765 99999999999988776554321
Q ss_pred ccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhhHHHHH
Q 000521 819 SLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFITL 898 (1446)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g~~~~~ 898 (1446)
... . .+..+.
T Consensus 225 ~~~-----------------------------------------------~----~~~~~~------------------- 234 (490)
T PRK10938 225 QAL-----------------------------------------------V----AQLAHS------------------- 234 (490)
T ss_pred chh-----------------------------------------------h----hhhhhh-------------------
Confidence 000 0 000000
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 899 VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKI 978 (1446)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~v 978 (1446)
..+ ..
T Consensus 235 --------------------~~~-~~------------------------------------------------------ 239 (490)
T PRK10938 235 --------------------EQL-EG------------------------------------------------------ 239 (490)
T ss_pred --------------------hcc-Cc------------------------------------------------------
Confidence 000 00
Q ss_pred hcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 979 VNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRST 1058 (1446)
Q Consensus 979 l~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~ 1058 (1446)
.
T Consensus 240 --------------------------~----------------------------------------------------- 240 (490)
T PRK10938 240 --------------------------V----------------------------------------------------- 240 (490)
T ss_pred --------------------------c-----------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000521 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIAT 1138 (1446)
Q Consensus 1059 sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~ 1138 (1446)
T Consensus 241 -------------------------------------------------------------------------------- 240 (490)
T PRK10938 241 -------------------------------------------------------------------------------- 240 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCcc
Q 000521 1139 MAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGL 1218 (1446)
Q Consensus 1139 ~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~ 1218 (1446)
.... ..+... ....+ +....
T Consensus 241 --------~~~~------------------------------------------------~~~~~~-~~~~~---~~~~~ 260 (490)
T PRK10938 241 --------QLPE------------------------------------------------PDEPSA-RHALP---ANEPR 260 (490)
T ss_pred --------ccCc------------------------------------------------cccccc-ccccC---CCCce
Confidence 0000 000000 00000 01225
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEEcCeeCCC-CChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-CGGQILVDGLNIIN-TPVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-~~G~I~IDG~di~~-i~~~~lR~~i 1296 (1446)
++++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+.++ ++|+|.+||.++.. .+....|+++
T Consensus 261 l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 261 IVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred EEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 999999999964 3599999999999999999999999999999999998876 69999999987632 2334568899
Q ss_pred EEEeCCCCCCC---CcHHHhcCCC--C---CC--ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000521 1297 AVVPQSPFLFE---GSLRDNLDPF--H---MN--DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1297 ~~VpQdp~lF~---gTIR~NLdp~--~---~~--~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1365 (1446)
+++||++.++. .|+++++.+. . .. .+.+.. ....+.++.+|++. ........||||||||++||
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQ-----KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHH
Confidence 99999986542 4677776421 1 01 011100 11223334446654 44555568999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCchhHhh--cCEEEEEeCCEEEEEec
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN--MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~-~-~TvI~IaHrl~ti~~--~DrIlvl~~G~vvE~~~ 1434 (1446)
||++++|++|||||||++||+++.+.+.+.|++..+ + .|||+|||+++.+.. ||+|++|++|++++.-.
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 999999999999999999999999999999987643 3 479999999999975 79999999999988643
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=600.10 Aligned_cols=196 Identities=22% Similarity=0.262 Sum_probs=160.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ + .++
T Consensus 323 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 323 KVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred eEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 46999999999964 3699999999999999999999999999999999999999999999954 2 169
Q ss_pred EEEeCCC-CCCC-CcHHHhcCCCCCC-----ChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHh
Q 000521 1297 AVVPQSP-FLFE-GSLRDNLDPFHMN-----DDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1297 ~~VpQdp-~lF~-gTIR~NLdp~~~~-----~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
+|+||++ .++. -|+++|+...... .+.+..+ .++.+|+.. ........||||||||++||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRA---------YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHH---------HHHhCCCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999997 5665 4999998643211 1122222 334446643 23445568999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-CEEEEE-eccc
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLVCI-SFIC 1436 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~-G~vvE~-~~~~ 1436 (1446)
+.+|++|||||||++||..+.+.+.+.|++. + .|||+|||+++.+.. ||+|++|++ |++.++ |.+.
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~ 529 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQ 529 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHH
Confidence 9999999999999999999999999999875 4 499999999998875 899999996 898864 4433
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-59 Score=639.99 Aligned_cols=545 Identities=19% Similarity=0.182 Sum_probs=400.4
Q ss_pred hHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 264 SLVRAICCAYGYPYIC-LGLLKVVNDSIGFAGPLLLNKLIKFLQ-QGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSK 341 (1446)
Q Consensus 264 ~l~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r 341 (1446)
+.++..+++.++.... .+++.++..++....|+.++...+.-. +.......+. .+.+++..++..++.....+....
T Consensus 953 ~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~-~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 953 SVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLR-LSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443322 233444555666778888876665321 1111111221 122333333444444444455567
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 000521 342 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSG 420 (1446)
Q Consensus 342 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~ 420 (1446)
.+.+.-..+...+|+|.++.+...++..+.|+++|.++.|++.+..... .+..+...++.++.++.++.....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999999999999999999999999999998654 445555666666555544433333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 421 LAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWC 500 (1446)
Q Consensus 421 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~ 500 (1446)
++++++...+..+..+..+..++...+.++...+..+|.++|+++||.||+|+.|.++..+..+...+..........+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333334444444455555566667777899999999999999999999998887776555444433322223332
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhh
Q 000521 501 VFFWATTPTLFSLFTFGLFAL-MGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELE 579 (1446)
Q Consensus 501 ~~~~~~~~~~~~~~~f~~~~~-~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~ 579 (1446)
.........+ .++..+.+.+ ..+.+++|.+..++.+...+..|+..+...+..+..+.+|.+||.+|++.++..+...
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 2221111111 1222233333 3467999999999999999999999999999999999999999999997654321100
Q ss_pred hhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC
Q 000521 580 QAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~ 659 (1446)
. ...+.. . -+.++.|+++|++|+|+++. +++|+|+||+|++||.++|||++|||||||+++|+|.++|
T Consensus 1271 ~-~~~~~~------~-wp~~g~I~f~nVsf~Y~~~~----~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1271 Q-ETAPPS------G-WPPRGRVEFRNYCLRYREDL----DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred c-CCCCCC------C-CCCCCcEEEEEEEEEeCCCC----cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 0 000000 0 02346799999999997532 2469999999999999999999999999999999999999
Q ss_pred CCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000521 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1446)
Q Consensus 660 ~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 726 (1446)
++|+|.++| +|+||||+|.||+|||||||....+++++...++++.|++++.++.+|+|.+|++||+
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 999999987 5999999999999999999983336888899999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 727 g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. ..+++|+|+|+||++.+..||+|++|++|+
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~-l~~-~~~~~TvI~IAHRl~ti~~~DrIlVld~G~ 1496 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQST-IRT-QFEDCTVLTIAHRLNTIMDYTRVIVLDKGE 1496 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999888776 443 567899999999999999999999999999
Q ss_pred EEEecChhHHHhccccCc
Q 000521 807 VKWIGSSADLAVSLYSGF 824 (1446)
Q Consensus 807 i~~~g~~~~l~~~~~~~~ 824 (1446)
|++.|+|+|++++++.+.
T Consensus 1497 IvE~G~~~eLl~~~~~f~ 1514 (1522)
T TIGR00957 1497 VAEFGAPSNLLQQRGIFY 1514 (1522)
T ss_pred EEEECCHHHHHhCCCHHH
Confidence 999999999987654443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=597.53 Aligned_cols=470 Identities=22% Similarity=0.288 Sum_probs=326.5
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--eEEEEcCCCC
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 678 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--~i~yv~Q~p~ 678 (1446)
.++++|++++|+.. +++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ .||||+|+|+
T Consensus 4 ~i~~~nls~~~~~~-----~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 78 (552)
T TIGR03719 4 IYTMNRVSKVVPPK-----KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ 78 (552)
T ss_pred EEEEeeEEEecCCC-----CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC
Confidence 47899999998521 2359999999999999999999999999999999999999999999874 6999999999
Q ss_pred CCC-ccHHHHHhcCCC-------------------CC--------hhhHHHHHHHhcchH---H----HhhccCCCcccc
Q 000521 679 ILS-GTIRDNILFGKN-------------------YD--------PQSYSETLKACTLDV---D----ISLMVGGDMAYI 723 (1446)
Q Consensus 679 l~~-~ti~~nI~~g~~-------------------~~--------~~~~~~v~~~~~l~~---d----i~~~~~gd~t~i 723 (1446)
+++ .|++|||.++.. .+ .+++.++++.++... . ++.+ |.. ..
T Consensus 79 ~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~ 155 (552)
T TIGR03719 79 LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PW 155 (552)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cc
Confidence 875 599999987521 01 012344444554321 1 1111 111 12
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEE
Q 000521 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVM 802 (1446)
Q Consensus 724 g~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l 802 (1446)
.....+|||||||||+||||++.+|+++||||||++||+.+.+++.+. +.. . +.|+|+|||+++.+.. ||+|++|
T Consensus 156 ~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~-L~~-~--~~tvIiisHd~~~~~~~~d~v~~l 231 (552)
T TIGR03719 156 DADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQH-LQE-Y--PGTVVAVTHDRYFLDNVAGWILEL 231 (552)
T ss_pred cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHH-HHh-C--CCeEEEEeCCHHHHHhhcCeEEEE
Confidence 456779999999999999999999999999999999999999988876 332 2 3599999999999876 9999999
Q ss_pred eCCEEE-EecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcch
Q 000521 803 DKGQVK-WIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVE 881 (1446)
Q Consensus 803 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~ 881 (1446)
++|+++ ..|+++++..... ... + ....+.+..+.
T Consensus 232 ~~g~i~~~~g~~~~~~~~~~-----------------~~~---------~---------------~~~~~~~~~~~---- 266 (552)
T TIGR03719 232 DRGRGIPWEGNYSSWLEQKE-----------------KRL---------E---------------QEEKEESARQK---- 266 (552)
T ss_pred ECCEEEEecCCHHHHHHHHH-----------------HHH---------H---------------HHHHHHHHHHH----
Confidence 999975 6788877643100 000 0 00000000000
Q ss_pred hHhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 882 LTVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 961 (1446)
Q Consensus 882 ~~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 961 (1446)
.+.. ...|....
T Consensus 267 ------~~~~--------------------------~~~~~~~~------------------------------------ 278 (552)
T TIGR03719 267 ------ALKR--------------------------ELEWVRSS------------------------------------ 278 (552)
T ss_pred ------HHHH--------------------------HHHHHHhh------------------------------------
Confidence 0000 00000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHH
Q 000521 962 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1041 (1446)
Q Consensus 962 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1041 (1446)
+
T Consensus 279 --------------------~----------------------------------------------------------- 279 (552)
T TIGR03719 279 --------------------P----------------------------------------------------------- 279 (552)
T ss_pred --------------------h-----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000521 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1121 (1446)
Q Consensus 1042 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1446)
.. ++ + +. +.
T Consensus 280 ---------------~~-~~-------~-----------------------------~~--------~~----------- 288 (552)
T TIGR03719 280 ---------------KA-RQ-------A-----------------------------KS--------KA----------- 288 (552)
T ss_pred ---------------hh-HH-------H-----------------------------HH--------HH-----------
Confidence 00 00 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-hcCCc
Q 000521 1122 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY-MDVPQ 1200 (1446)
Q Consensus 1122 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~-~~~~~ 1200 (1446)
.....++..+. ...++
T Consensus 289 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 305 (552)
T TIGR03719 289 ---------------------------------------------------------------RLARYEELLSQEFQKRN 305 (552)
T ss_pred ---------------------------------------------------------------HHHHHHhhhhhcccccC
Confidence 00000000000 00000
Q ss_pred cccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEc
Q 000521 1201 EELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1446)
Q Consensus 1201 e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1446)
+... ...+...-+.+..++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++
T Consensus 306 ~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~ 382 (552)
T TIGR03719 306 ETAE-IYIPPGPRLGDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG 382 (552)
T ss_pred CCce-eecCCCCCCCCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC
Confidence 0000 0000000011235999999999964 369999999999999999999999999999999999999999999995
Q ss_pred CeeCCCCChHhHhcceEEEeCCCC-CCC-CcHHHhcCCCCC---CC--hHHHHHHHHHccHHHHHHhCCCch-hhhcCCC
Q 000521 1281 GLNIINTPVRDLRGRFAVVPQSPF-LFE-GSLRDNLDPFHM---ND--DLKIWSVLEKCHVKEEVEAVGLET-FVKESGI 1352 (1446)
Q Consensus 1281 G~di~~i~~~~lR~~i~~VpQdp~-lF~-gTIR~NLdp~~~---~~--d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~ 1352 (1446)
+ + .+|+|+||++. +++ -|+++|+..... .. +.+.. +.++.+|++. .......
T Consensus 383 ~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~~l~~~~~~~~~~ 442 (552)
T TIGR03719 383 E-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRFNFKGSDQQKKVG 442 (552)
T ss_pred C-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhCCCChhHhcCchh
Confidence 4 2 16999999973 665 499999965321 11 11122 2344446643 2345556
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-CEEE
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-GHLV 1430 (1446)
Q Consensus 1353 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~-G~vv 1430 (1446)
.||||||||++||||++.+|++|||||||++||..+.+.+.+.|++. . .|||+|||+++.+.. ||+|++|++ |+++
T Consensus 443 ~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 443 QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 89999999999999999999999999999999999999999999876 3 499999999999876 899999997 6888
Q ss_pred EEe
Q 000521 1431 CIS 1433 (1446)
Q Consensus 1431 E~~ 1433 (1446)
+++
T Consensus 521 ~~~ 523 (552)
T TIGR03719 521 WFE 523 (552)
T ss_pred EeC
Confidence 653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=536.88 Aligned_cols=511 Identities=23% Similarity=0.285 Sum_probs=407.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000521 287 NDSIGFAGPLLLNKLIKFLQQ--GSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVR 362 (1446)
Q Consensus 287 ~~~~~~~~P~ll~~li~~~~~--~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~ 362 (1446)
.-.+...+|++++.+++.+.. ..+ .......+.+++++.++.++++-........+..++-......+|++.+.++
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345677899999999998864 222 2233456667777788888888888888888888888889999999999999
Q ss_pred ccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000521 363 LAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITIL-LIPVNKWIANLIAN 440 (1446)
Q Consensus 363 ~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~~~-~~~~~~~~~~~~~~ 440 (1446)
.+.+.+..+|++.+.|.--...+..... .+..+....+++.++...+++..|.+..+...+.+. .......++.+-.+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 9999889999999999888888887654 456777788899998989999999876554433333 33344455666678
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000521 441 ATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF- 519 (1446)
Q Consensus 441 ~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~- 519 (1446)
.+++.+++.++..+..-+.|.|-.+||.|+-|+...++....-.+--+...+.....++..+.... .+....++..|
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~--iFsv~~~~im~l 279 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKA--IFSVALTFIMVL 279 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 889999999999999999999999999999999998888765322222222222222222222111 11122223333
Q ss_pred ---HHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCC
Q 000521 520 ---ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFN 596 (1446)
Q Consensus 520 ---~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~ 596 (1446)
-+.++.+|.+...-..+++.+|..|+..|...+..+.++..-++-.....+.++ + . +....|. .
T Consensus 280 ~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~--~-i-~~~~~~i---------~ 346 (591)
T KOG0057|consen 280 GSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDE--D-I-QEAALPI---------E 346 (591)
T ss_pred HhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh--h-h-hhccCCc---------c
Confidence 245568999999999999999999999999999988888877765543332111 1 1 1100111 1
Q ss_pred CCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------
Q 000521 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668 (1446)
Q Consensus 597 ~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------- 668 (1446)
..+..|+|+|++|+|.+ .+++|+++||+|++||.++|+|+|||||||++++|+++++ .+|+|.++|
T Consensus 347 ~~~~~I~F~dV~f~y~~-----k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYGP-----KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSL 420 (591)
T ss_pred cCCCcEEEEeeEEEeCC-----CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhCh
Confidence 23456999999999963 2446999999999999999999999999999999999999 999999998
Q ss_pred -----eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000521 669 -----SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 669 -----~i~yv~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lAR 742 (1446)
.||||||+..|||.||.+||.+|++. .+++..++++..++++-+..+|+|++|.+||+|..|||||||||+|||
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaR 500 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLAR 500 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHH
Confidence 49999999999999999999999874 566777788888999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhcc
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 820 (1446)
Q Consensus 743 aly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~ 820 (1446)
|+.+||+|+++|||||+||.+|++.+++. +.+ ...+||+|+|.||++.++.+|+|+++++|++.+.|+++|++...
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~-i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s 576 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDM-IMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPS 576 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHH-HHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhh
Confidence 99999999999999999999999999998 444 67899999999999999999999999999999999999998743
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=528.77 Aligned_cols=451 Identities=25% Similarity=0.341 Sum_probs=339.8
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------ 668 (1446)
..+.++|.+.++.... ....++++|||++++||.+++||.||||||-..++++|+++. -+|+|..+|
T Consensus 5 ~lL~v~nLsV~f~~~~--~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 5 PLLSIRNLSVAFHQEG--GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred cceeeeccEEEEecCC--cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 3467888888776543 234579999999999999999999999999999999999975 367888776
Q ss_pred -----------eEEEEcCCCCC-CCc--cHHHHH----hcCCCCC----hhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000521 669 -----------SIAYVPQVPWI-LSG--TIRDNI----LFGKNYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1446)
Q Consensus 669 -----------~i~yv~Q~p~l-~~~--ti~~nI----~~g~~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 726 (1446)
+|+.++|+|-- .|- ||-.-| ...+..+ +++..+.++..++.+- ...+...
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~y 154 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAY 154 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhC
Confidence 69999999952 232 655444 4444333 2344555555655431 1234556
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCC
Q 000521 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKG 805 (1446)
Q Consensus 727 g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G 805 (1446)
...|||||||||-||.||..+|++||-||||.|||..+..+|++.+-.-....|..+++|||++..++. ||+|+||.+|
T Consensus 155 PHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G 234 (534)
T COG4172 155 PHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHG 234 (534)
T ss_pred CcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEecc
Confidence 679999999999999999999999999999999999999999986322113346799999999999987 9999999999
Q ss_pred EEEEecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhH
Q 000521 806 QVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVY 885 (1446)
Q Consensus 806 ~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y 885 (1446)
+++|.|+.+++...... .|
T Consensus 235 ~ivE~~~t~~lF~~PqH-------------------------------------------------------------pY 253 (534)
T COG4172 235 EIVETGTTETLFAAPQH-------------------------------------------------------------PY 253 (534)
T ss_pred EEeecCcHHHHhhCCCC-------------------------------------------------------------hH
Confidence 99998876554321000 00
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 886 KNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 965 (1446)
Q Consensus 886 ~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 965 (1446)
.+
T Consensus 254 ---Tr--------------------------------------------------------------------------- 255 (534)
T COG4172 254 ---TR--------------------------------------------------------------------------- 255 (534)
T ss_pred ---HH---------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHH
Q 000521 966 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFW 1045 (1446)
Q Consensus 966 ~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~ 1045 (1446)
T Consensus 256 -------------------------------------------------------------------------------- 255 (534)
T COG4172 256 -------------------------------------------------------------------------------- 255 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 000521 1046 FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRL 1125 (1446)
Q Consensus 1046 ~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l 1125 (1446)
+
T Consensus 256 ---------------~---------------------------------------------------------------- 256 (534)
T COG4172 256 ---------------K---------------------------------------------------------------- 256 (534)
T ss_pred ---------------H----------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCcccccc
Q 000521 1126 QLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCG 1205 (1446)
Q Consensus 1126 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~ 1205 (1446)
+++ .|+..
T Consensus 257 ---------------------------------------------------------------------Ll~--aeP~g- 264 (534)
T COG4172 257 ---------------------------------------------------------------------LLA--AEPSG- 264 (534)
T ss_pred ---------------------------------------------------------------------HHh--cCCCC-
Confidence 000 00000
Q ss_pred CCCCCCCCCCCccEEEEEEEEEecCC---------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCce
Q 000521 1206 YQSLSPDWPFQGLIEFQNVTMRYKPS---------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1446)
Q Consensus 1206 ~~~~~~~wp~~g~I~f~nVs~~Y~~~---------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1446)
..+|..-...--++.+||...|+-. .-.+.++|||+.++||.+||||+||||||||-.+|+|+++++ |+
T Consensus 265 -~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~ 342 (534)
T COG4172 265 -DPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GE 342 (534)
T ss_pred -CCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ce
Confidence 0111111122357777887777422 124799999999999999999999999999999999999976 99
Q ss_pred EEEcCeeCCCCChHh---HhcceEEEeCCCC--CCC-CcHHHhcC----CCC-CC----ChHHHHHHHHHccHHHHHHhC
Q 000521 1277 ILVDGLNIINTPVRD---LRGRFAVVPQSPF--LFE-GSLRDNLD----PFH-MN----DDLKIWSVLEKCHVKEEVEAV 1341 (1446)
Q Consensus 1277 I~IDG~di~~i~~~~---lR~~i~~VpQdp~--lF~-gTIR~NLd----p~~-~~----~d~ei~~aL~~~~L~~~i~~l 1341 (1446)
|..+|.||...+.++ +|+++-+|.|||+ |=+ .||-+-+. -.. .. .|+.+.+||+.+||+...
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~--- 419 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT--- 419 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH---
Confidence 999999999888776 5799999999997 222 25544442 111 11 245567777777654432
Q ss_pred CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-c
Q 000521 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-M 1418 (1446)
Q Consensus 1342 gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~ 1418 (1446)
...-...|||||||||+||||+.-+|++++||||||+||......|.+.+++.- .+-+-++|+|+|..++. |
T Consensus 420 -----r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~ 494 (534)
T COG4172 420 -----RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC 494 (534)
T ss_pred -----hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh
Confidence 234456799999999999999999999999999999999999999999998753 47799999999999985 9
Q ss_pred CEEEEEeCCEEEEEeccchhhh
Q 000521 1419 DEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1419 DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|+|+||.+|+|||.|.-...|.
T Consensus 495 ~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 495 HRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred ceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999999887774
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-59 Score=591.70 Aligned_cols=198 Identities=22% Similarity=0.329 Sum_probs=160.9
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 311 ~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 311 PLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred ceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 36999999999964 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEeCCC--CCCC-CcHHHhcCCC-CCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSP--FLFE-GSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp--~lF~-gTIR~NLdp~-~~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+|+||++ .+.. .|+.+|+... ....++++.+.|+. +|+.. ........||||||||++||||++++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~ 448 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGG---------FGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHH---------cCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999985 2443 3787776321 11122333344443 35532 34445567999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEE-Eeccchh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVC-ISFICRY 1438 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE-~~~~~~~ 1438 (1446)
|++|||||||++||..+...+.+.|++. . .|||+|||+++.+.. ||+|++|++|++++ .|.+..|
T Consensus 449 p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 449 PNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999875 4 599999999999875 89999999999984 5666544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-57 Score=613.69 Aligned_cols=210 Identities=20% Similarity=0.284 Sum_probs=173.4
Q ss_pred cEEEEEEEEEecC-----------CCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEcCeeC
Q 000521 1218 LIEFQNVTMRYKP-----------SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNI 1284 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~-----------~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di 1284 (1446)
.+.|+||++.++. +...+|+|+|++++|||.+||+|+||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6999999998852 123699999999999999999999999999999999999763 689999999886
Q ss_pred CCCChHhHhcceEEEeCCCCCCCC-cHHHhcCCCC------CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCC-C
Q 000521 1285 INTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH------MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESG-I 1352 (1446)
Q Consensus 1285 ~~i~~~~lR~~i~~VpQdp~lF~g-TIR~NLdp~~------~~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G-~ 1352 (1446)
. ...+|+.++||+|++.+++. |+||||.+.. ..+++ .+.++++..+|.+. .|+.+|..+ .
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-----~~~~vg~~~~~ 1018 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-----KDAIVGLPGVT 1018 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-----hCCccCCCCCC
Confidence 4 34567889999999988764 9999996421 12222 24455666655443 356665433 4
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchh--HhhcCEEEEEeC-CE
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GH 1428 (1446)
Q Consensus 1353 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~t--i~~~DrIlvl~~-G~ 1428 (1446)
.||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +++|||+++|+++. ...||++++|++ |+
T Consensus 1019 ~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1019 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 699999999999999999999999999999999999999999998864 48999999999984 356999999996 89
Q ss_pred EEEEecc
Q 000521 1429 LVCISFI 1435 (1446)
Q Consensus 1429 vvE~~~~ 1435 (1446)
++.+|.+
T Consensus 1099 ~v~~G~~ 1105 (1470)
T PLN03140 1099 VIYSGPL 1105 (1470)
T ss_pred EEEECCc
Confidence 9999986
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=519.92 Aligned_cols=538 Identities=20% Similarity=0.240 Sum_probs=390.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1446)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 343 (1446)
++...+ .++.++..+++.++..+....-=++-..+|..-.-... ....++.+++.=+..++.++..+.-........
T Consensus 8 i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 8 LRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344444 56666666655554433333222222333322111111 122333344444566777777666666677888
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHhHHHHHHHH
Q 000521 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAW--SLPFQIGVALYLLYTQVKFAFVSGL 421 (1446)
Q Consensus 344 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~--~~pl~i~i~~~lL~~~lg~a~l~~~ 421 (1446)
.++-+.+.-.+|+|....+.........|++.|.+..|++.+++...-...-| +..+.+++.+.+-+..++.+.+.++
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999998888888999999999999999999765433322 2222333344444667777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1446)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1446)
...+..+.+...+.+.-++..+...+.+..--+.+.+.+.|....+++|.++.+.+.+++.-..-.+..++...+..+..
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655666666666666677777777777888999999999999999999888776643333333333333333333
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhCCCCC-HhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 000521 502 FFWATTPTLF---SLFTFGLFALMGHQLD-AAMVFTCLALFNSLISPLNS-FPWVINGLIDAFISIRRLTRFLGCSEYKH 576 (1446)
Q Consensus 502 ~~~~~~~~~~---~~~~f~~~~~~~~~Lt-~~~~ft~l~l~~~l~~pl~~-l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 576 (1446)
++......+. .++|++.-. ..|..+ +..+...+..|..+. |+.. .|.++..+.+...|.+|+.+.++.++...
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~-~~G~~~~~~aa~~ll~~f~~~e-af~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~ 324 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQV-GAGALAQPGAALALLVIFAALE-AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT 324 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-cCCCcchhHHHHHHHHHHHHHH-HHhhhcchhHHHhhHHHHHHHHHhhhccCCcccC
Confidence 3322221111 122222211 123344 222222222233332 2222 23677888999999999999887654322
Q ss_pred hhhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcC
Q 000521 577 ELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~ 656 (1446)
.. . ... ...+..++++|++|+|+..+ .++|+|+||++++||.++|+|+||||||||++.+.|.
T Consensus 325 ~~-~-~~~-----------~~~~~~l~~~~vsF~y~~~~----~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~ 387 (573)
T COG4987 325 FP-D-EQT-----------ATTGQALELRNVSFTYPGQQ----TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA 387 (573)
T ss_pred CC-c-ccc-----------CCccceeeeccceeecCCCc----cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 11 0 000 11222789999999997542 3469999999999999999999999999999999999
Q ss_pred ccCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCccc
Q 000521 657 MMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAY 722 (1446)
Q Consensus 657 ~~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ 722 (1446)
++|++|+|..+| .+++++|.+.+|++|+|||+..+++- ++|...++++..+|++-++..|+|.+|.
T Consensus 388 ~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~ 467 (573)
T COG4987 388 WDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTW 467 (573)
T ss_pred cCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhch
Confidence 999999999987 58999999999999999999999864 6788999999999999999999999999
Q ss_pred ccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEE
Q 000521 723 IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVM 802 (1446)
Q Consensus 723 ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l 802 (1446)
+||+|..||||||||++|||++.+|+++++|||||.+||+.|++++++. +.. ..+|||+|+||||+..++.+|+|++|
T Consensus 468 lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~l-l~~-~~~~kTll~vTHrL~~le~~drIivl 545 (573)
T COG4987 468 LGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL-LFE-HAEGKTLLMVTHRLRGLERMDRIIVL 545 (573)
T ss_pred hccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHH-HHH-HhcCCeEEEEecccccHhhcCEEEEE
Confidence 9999999999999999999999999999999999999999999999987 444 67899999999999999999999999
Q ss_pred eCCEEEEecChhHHHhccccCcc
Q 000521 803 DKGQVKWIGSSADLAVSLYSGFW 825 (1446)
Q Consensus 803 ~~G~i~~~g~~~~l~~~~~~~~~ 825 (1446)
++|+++++|+|.+++.+++.+.+
T Consensus 546 ~~Gkiie~G~~~~Ll~~~g~~~~ 568 (573)
T COG4987 546 DNGKIIEEGTHAELLANNGRYKR 568 (573)
T ss_pred ECCeeeecCCHHhhhccccHHHH
Confidence 99999999999999886655443
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-57 Score=583.48 Aligned_cols=536 Identities=22% Similarity=0.250 Sum_probs=393.5
Q ss_pred HhHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 883 TVYKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSS-QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAF 961 (1446)
Q Consensus 883 ~~y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 961 (1446)
++.+.-++..+|.++...++..+.. ......+..+....+..... .+......|..+.++..++.+++.....+....
T Consensus 190 sl~~al~~~f~~~~~~~~~~~~~~~-~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~ 268 (1381)
T KOG0054|consen 190 SLLRALLRTFGRTFLLSGIFLFLRD-LAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFR 268 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4455555555555544443333333 33566677777666543322 122223445555556666666666666666777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHH
Q 000521 962 GSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLL 1041 (1446)
Q Consensus 962 ~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1041 (1446)
.+.|....+-..+++|.++..-+--..++.|+|+|-++.|.+.+++..+.....+...+-.+++...+.-...+..+ +.
T Consensus 269 ~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~-~G 347 (1381)
T KOG0054|consen 269 VGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSAL-AG 347 (1381)
T ss_pred hhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HH
Confidence 88888888899999999999988888889999999999999999998888777776655544443333222222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000521 1042 VPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWL 1121 (1446)
Q Consensus 1042 ~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl 1121 (1446)
+.+++++.-++.+..+..+..++.....+..-....+|.++|+++||.|+||+.|.++..+.-+.-.+...+....+...
T Consensus 348 ~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~ 427 (1381)
T KOG0054|consen 348 VAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALN 427 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222223232333333333333333344467899999999999999999999998776554444433333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCcc
Q 000521 1122 SLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE 1201 (1446)
Q Consensus 1122 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e 1201 (1446)
..... ....++.++.+.+... ...+..++..+..++++.-.+..++..+......+-++.+|++|+.+|+..++.
T Consensus 428 ~~~~~-~~p~lv~~~tF~~~v~----~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~ 502 (1381)
T KOG0054|consen 428 SFLNF-FSPVLVSVVTFVVFVL----LLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEEL 502 (1381)
T ss_pred HHHHH-HHHHHHHHHHHHHHhh----ccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 22211 1122222222222110 112345677777788888888888888888888888999999999999976543
Q ss_pred ccccCCCCCCCCCCCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEc
Q 000521 1202 ELCGYQSLSPDWPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1446)
Q Consensus 1202 ~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1446)
+...... .+.-+.+-.|+++|.+|+++++ .++.|+||||+|++||.+||||++|||||||+++|+|-++..+|++.++
T Consensus 503 ~~~~~~~-~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~ 581 (1381)
T KOG0054|consen 503 DPDSVER-SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN 581 (1381)
T ss_pred Ccccccc-CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence 3211111 1222345579999999999864 4459999999999999999999999999999999999999999999998
Q ss_pred CeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhH
Q 000521 1281 GLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQ 1358 (1446)
Q Consensus 1281 G~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQ 1358 (1446)
|. ++||||.|++|+|||||||.++.+++++...++++.|+|++.++.+ |-.|+|||+|.||||||
T Consensus 582 gs-------------iaYv~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQ 648 (1381)
T KOG0054|consen 582 GS-------------VAYVPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQ 648 (1381)
T ss_pred Ce-------------EEEeccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhH
Confidence 73 9999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHH-HHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccch
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASI-LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~-Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
||||+||||++++++|++||+|.|+||+++.+. ++++|+...++||+|.|||+++.+.+||+|+||++|+|+|.|++..
T Consensus 649 KqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~e 728 (1381)
T KOG0054|consen 649 KQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEE 728 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHH
Confidence 999999999999999999999999999999875 5678888889999999999999999999999999999999999987
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
+.
T Consensus 729 l~ 730 (1381)
T KOG0054|consen 729 LL 730 (1381)
T ss_pred HH
Confidence 65
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-56 Score=611.89 Aligned_cols=476 Identities=18% Similarity=0.198 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 000521 343 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAFVSGL 421 (1446)
Q Consensus 343 ~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~ 421 (1446)
+.+....+...+|++.++.+...+++.+.|+++|.++.|++.+.+.+. .+..+....+.++.++.++.....+.+++.+
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677899999999999999999999999999999999998654 3455555555555444443333223333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 422 AITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1446)
Q Consensus 422 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1446)
+++++...+..++.+..+..++......+.-.+.++|.++|+++||.|+.|+.+.++..+.-+...+...+......+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333344455555666666667777788999999999999999999999888876654444443332222222222
Q ss_pred HHHHHH--HHHHHHHHHHHH--HHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch-
Q 000521 502 FFWATT--PTLFSLFTFGLF--ALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH- 576 (1446)
Q Consensus 502 ~~~~~~--~~~~~~~~f~~~--~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~- 576 (1446)
...... ...+.++.++++ ....+.++++.+..++.+...+..|+..+...+..+..++.|++||.+|++..+.++
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 211111 111112222222 222345789988888888899999999999999999999999999999996422111
Q ss_pred -hhhh-------hcCCCCc------ccCC--C--ccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEE
Q 000521 577 -ELEQ-------AANSPSY------ISNG--L--SNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAV 638 (1446)
Q Consensus 577 -~~~~-------~~~~~~~------~~~~--~--~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~i 638 (1446)
.... ....+.+ .... . .......+.|+|+|++|+|+++. +++|+|+||+|++||.++|
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~----~~vL~~vsf~I~~GekVaI 1341 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGL----PLVLRGVSFRIAPREKVGI 1341 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCC----CceeecceEEECCCCEEEE
Confidence 0000 0000000 0000 0 00011235799999999996431 3469999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHH
Q 000521 639 IGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKA 705 (1446)
Q Consensus 639 vG~~GsGKStll~~llg~~~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~ 705 (1446)
||++|||||||+++|+|.++|++|+|.++| .|+||||+|.||+|||||||..+.+++++...++++.
T Consensus 1342 VGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHH
Confidence 999999999999999999999999999987 5999999999999999999987778889999999999
Q ss_pred hcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC-CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEE
Q 000521 706 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG-SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784 (1446)
Q Consensus 706 ~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~-~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~i 784 (1446)
|++++.++.+|+|.+|.+||+|.+||||||||++||||++++ |+|+|||||||+||+++++.|.+. +.. ..+++|+|
T Consensus 1422 a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~-~~~~~TvI 1499 (1560)
T PTZ00243 1422 VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMS-AFSAYTVI 1499 (1560)
T ss_pred CCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HCCCCEEE
Confidence 999999999999999999999999999999999999999996 899999999999999999998776 443 45789999
Q ss_pred EEccCcchhhhCCEEEEEeCCEEEEecChhHHHhc-cccCc
Q 000521 785 LCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS-LYSGF 824 (1446)
Q Consensus 785 lvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~-~~~~~ 824 (1446)
+|+||++.+..||+|++|++|+|++.|+++|++++ ++.+.
T Consensus 1500 ~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~ 1540 (1560)
T PTZ00243 1500 TIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFH 1540 (1560)
T ss_pred EEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999864 34443
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=582.00 Aligned_cols=198 Identities=23% Similarity=0.326 Sum_probs=161.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+ |.++ +|+
T Consensus 319 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 5899999999964 36999999999999999999999999999999999999999999999 4332 599
Q ss_pred EEeCCC-CCCCC-cHHHhcCCCCC-C--C--hHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1298 VVPQSP-FLFEG-SLRDNLDPFHM-N--D--DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1298 ~VpQdp-~lF~g-TIR~NLdp~~~-~--~--d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
|++|++ .+++. |+++|+..... . . +.++.+ .+..+|+.. ........||||||||++||||++
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~ 456 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLG---------YLQDFLFHPKRAMTPVKALSGGERNRLLLARLFL 456 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccchHHHHHH---------HHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHh
Confidence 999986 46654 99999964321 1 1 122222 333345532 334445579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe-CCEEEEEeccchhhhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-HGHLVCISFICRYFIF 1441 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~-~G~vvE~~~~~~~~~~ 1441 (1446)
++|++|||||||++||..+.+.+.+.|++. +.|||+|||+.+.+.. ||+|++|+ +|++.++ +.+|-.|
T Consensus 457 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~--~g~y~~y 526 (635)
T PRK11147 457 KPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY--VGGYHDA 526 (635)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc--cCCHHHH
Confidence 999999999999999999999999999875 5699999999999865 89999998 8999876 3444444
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=555.09 Aligned_cols=522 Identities=15% Similarity=0.107 Sum_probs=376.4
Q ss_pred HHH-HHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 269 ICC-AYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLR 347 (1446)
Q Consensus 269 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir 347 (1446)
+++ .+++.++..+++.++..++....|.+++.+++..... .....+. +++..++..++.....+...+.+.++.
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL-GQGSLFS----FGGLCLLALLFRIGADIFPAYAGMHII 85 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 7788888888899999999999999999887632111 1111111 112233444555666777888999999
Q ss_pred HHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhHHHHHHHHHHHHH
Q 000521 348 SSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALY-LLYTQVKFAFVSGLAITIL 426 (1446)
Q Consensus 348 ~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~-lL~~~lg~a~l~~~~v~~~ 426 (1446)
..+...+|+|.++++...+.+.++|++++.++.|++.+.+....+..+....+.+++++. +++....++.+ .++++++
T Consensus 86 ~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li-~l~~~~~ 164 (555)
T TIGR01194 86 ANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAI-TISAIII 164 (555)
T ss_pred HHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence 999999999999999998888899999999999999999876555555544444433333 33333222222 2222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 427 LIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQ--IFSSWLMKTRSSEVKHLSTRKYLDAWCVFFW 504 (1446)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~--~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~ 504 (1446)
.+.+..+..++..+..++..+..++..+.+.|.+.|++++|.++.++ ...+++++.-++..+...+..........+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFG 244 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566677777788888899999999999999999999854 3333343332222222111111111111111
Q ss_pred HHHHHHHH--HHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhc
Q 000521 505 ATTPTLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAA 582 (1446)
Q Consensus 505 ~~~~~~~~--~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~ 582 (1446)
.....+.. .+.++.+ .+.++.+.+++++.+...+..|+..+...++.+.++.+|.+||.++++.++.++......
T Consensus 245 ~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~ 321 (555)
T TIGR01194 245 QLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELS 321 (555)
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 11111111 1111111 257999999999999999999999999999999999999999999986422111000000
Q ss_pred CCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCc
Q 000521 583 NSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G 662 (1446)
.... ............++++|++|+|+..+. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|
T Consensus 322 ~~~~---~~~~~~~~~~~~i~~~~v~f~y~~~~~-~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G 397 (555)
T TIGR01194 322 DADN---VLLLAHDKSVDSIELKDVHMNPKAPEG-SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397 (555)
T ss_pred cccc---ccccccCCCCceEEEEEEEEEeCCCCC-CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 0000 000000112356999999999974311 113469999999999999999999999999999999999999999
Q ss_pred EEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000521 663 SIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1446)
Q Consensus 663 ~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 729 (1446)
+|.++| .++||+|+|++|++|+++|+ ..+.++++.+++++.++++++++.+|+|++|. .+
T Consensus 398 ~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~ 470 (555)
T TIGR01194 398 EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TA 470 (555)
T ss_pred EEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----cc
Confidence 999986 48999999999999999996 33456778889999999999999999999984 78
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEE
Q 000521 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKW 809 (1446)
Q Consensus 730 LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~ 809 (1446)
||||||||++||||++++|+|+|||||||+||+++++.+.+.++.....+++|+|+||||++.+..||+|++|++|++++
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999987643221235899999999999999999999999999986
Q ss_pred e
Q 000521 810 I 810 (1446)
Q Consensus 810 ~ 810 (1446)
.
T Consensus 551 ~ 551 (555)
T TIGR01194 551 D 551 (555)
T ss_pred e
Confidence 4
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=511.63 Aligned_cols=519 Identities=22% Similarity=0.289 Sum_probs=385.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 282 LLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLA---IALGLTS---ILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355 (1446)
Q Consensus 282 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~---~~l~~~~---~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy 355 (1446)
++.++.-++....|.+.+.+++.+.. +...-+.+. +.+.+.+ -+..++++...+...++..-....+-..+|
T Consensus 222 ~ll~i~rli~~~~pi~~k~iv~~lta--p~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lf 299 (790)
T KOG0056|consen 222 FLLIIGRLINVSLPILSKWIVDELTA--PDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELF 299 (790)
T ss_pred HHHHHHHHHhhhhHHhHHHHHHhhcC--cchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHH
Confidence 34444556677889999999988763 222222222 2222222 123566666666666666666777888999
Q ss_pred HHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH---HHHHHHHH
Q 000521 356 QKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAIT---ILLIPVNK 432 (1446)
Q Consensus 356 ~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~---~~~~~~~~ 432 (1446)
+|...++....-.+.+|++...|...++.+.-.-..+..+-...+.+++++...+. ..-...|++++ .+...+..
T Consensus 300 rHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~--~Fn~wFgLIVfl~m~lY~~~Ti 377 (790)
T KOG0056|consen 300 RHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFI--KFNIWFGLIVFLMMLLYCYVTI 377 (790)
T ss_pred HHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhh--hHhHHHHHHHHHHHHHHhheee
Confidence 99999998887778899999999777666652222333444444455555544333 33333344333 22223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 433 WIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMK----TRSSEVKHLSTRKYLDAWCVFFWATTP 508 (1446)
Q Consensus 433 ~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~----~R~~El~~~~~~~~~~~~~~~~~~~~~ 508 (1446)
.+...-.+++++++..-.+--..-.+.+-+-.+||.|+.|+...++..+ ..++|-+.+.....+......+...
T Consensus 378 ~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l-- 455 (790)
T KOG0056|consen 378 KITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL-- 455 (790)
T ss_pred eeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--
Confidence 3444445666666665555556667888899999999999876655433 3444444433333322222211111
Q ss_pred HHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcc
Q 000521 509 TLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYI 588 (1446)
Q Consensus 509 ~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~ 588 (1446)
.+.....+.+|.+..+.+|+|...-...++-.+.+|++.+......++...+-++|+.+.++.++...+. +..++
T Consensus 456 gll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~---P~a~p-- 530 (790)
T KOG0056|consen 456 GLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL---PGAPP-- 530 (790)
T ss_pred HHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC---CCCCC--
Confidence 1122223456667788999999888899999999999999999999999999999999999654321111 11111
Q ss_pred cCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC
Q 000521 589 SNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 668 (1446)
Q Consensus 589 ~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~ 668 (1446)
.....+.|+++|++|+|+++ +++|+||||+++||+.+++|||||+||||++++|.+.++..+|+|.+||
T Consensus 531 ------l~~~~G~i~fsnvtF~Y~p~-----k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg 599 (790)
T KOG0056|consen 531 ------LKVTQGKIEFSNVTFAYDPG-----KPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG 599 (790)
T ss_pred ------ccccCCeEEEEEeEEecCCC-----CceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC
Confidence 12356789999999999753 4559999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 -------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 -------------~i~yv~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
+||.||||..|||.||..||.++++- ..|...++.+|++.++.|..+|+|++|.|||+|..||||+
T Consensus 600 qdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE 679 (790)
T KOG0056|consen 600 QDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE 679 (790)
T ss_pred chHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence 59999999999999999999999874 4566777889999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChh
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~ 814 (1446)
|||||+||++.++|.|++|||+|||||.++++.|-.. +.. +..++|.|+|.||++.+-+||.|++++||+|+|.|+|+
T Consensus 680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaa-L~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~He 757 (790)
T KOG0056|consen 680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAA-LAR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHE 757 (790)
T ss_pred hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHH-HHH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHH
Confidence 9999999999999999999999999999999998654 433 77899999999999999999999999999999999999
Q ss_pred HHHhc-cccCc
Q 000521 815 DLAVS-LYSGF 824 (1446)
Q Consensus 815 ~l~~~-~~~~~ 824 (1446)
|+... ++.+.
T Consensus 758 eLl~rdgG~Ya 768 (790)
T KOG0056|consen 758 ELLKRDGGAYA 768 (790)
T ss_pred HHHhccCCcHH
Confidence 99876 44443
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-56 Score=566.40 Aligned_cols=202 Identities=21% Similarity=0.309 Sum_probs=163.0
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..++++||+++|+++ +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+++ +.++
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 469999999999533 3699999999999999999999999999999999999999999999875 3579
Q ss_pred EEEeCCCCCCCCcHHHhcC-C----CCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1297 AVVPQSPFLFEGSLRDNLD-P----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLd-p----~~~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+|+||++. ...++.+|.. . +...+++++.++|+..+ ++. ........||||||||++||||+++
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~g---------l~~~~~~~~~~~LSgGqkqRvaLAraL~~ 644 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG---------VTGNLALQPMYTLSGGQKSRVAFAKITFK 644 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCC---------CChHHhcCCccccCHHHHHHHHHHHHHhc
Confidence 99999973 2224444421 1 11233455555555554 432 2344556899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEE-Eeccchhhhhh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVC-ISFICRYFIFL 1442 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE-~~~~~~~~~~~ 1442 (1446)
+|++|||||||++||..+.+.+.+.+++. + .|||+|||+++.+.. ||+|++|++|++++ .|.+..|-.++
T Consensus 645 ~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~~ 716 (718)
T PLN03073 645 KPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKTL 716 (718)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHh
Confidence 99999999999999999999998888764 4 499999999999976 89999999999984 57766665544
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=504.57 Aligned_cols=480 Identities=22% Similarity=0.251 Sum_probs=349.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHH-HHHHHHH
Q 000521 941 LCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFI-LNILLAN 1019 (1446)
Q Consensus 941 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~-l~~~~~~ 1019 (1446)
...+.++..++..++...+.+.+.+.-.+++..++...+++|..--...+....++ |++.+..++... ...++..
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~Lr----DL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLR----DLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccchh----hHHHHHHHHcCCCcchhcCC
Confidence 34455567778889999999999999999999999999888876544444444443 444444433210 0000000
Q ss_pred HHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHH
Q 000521 1020 FVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099 (1446)
Q Consensus 1020 ~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~ 1099 (1446)
=... ..+.+++...||+.++.+.-.++...+...-....++--+...+....-..+..-+..+..+|+|.|......++
T Consensus 145 PW~P-~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~r 223 (580)
T COG4618 145 PWMP-LYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKR 223 (580)
T ss_pred chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHH
Confidence 0000 111223334555554443332222222211112222222222223333446677889999999999998877766
Q ss_pred HHHHHHHHHHH----HHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHH
Q 000521 1100 FKEHVVLYQRT----SYSEL---TASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLL 1172 (1446)
Q Consensus 1100 ~~~~~d~~~~~----~~~~~---~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l 1172 (1446)
+.+....+... ..... ...+-+-..+|. . +..+-+.+. ..+..++|.+...-........++
T Consensus 224 W~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs---~---iLg~GA~Lv-----i~ge~t~G~mIA~SIl~gRaLaPi 292 (580)
T COG4618 224 WGRFNAAYLSAQERASDRNGAFGALSRALRMALQS---A---VLGLGAWLV-----IKGEITPGMMIAGSILSGRALAPI 292 (580)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---H---HHhcceeeE-----EcCcCCcchhhHHHHHhhhhhccH
Confidence 65544444333 22211 111211111111 0 111111111 134556776655555555666788
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEE
Q 000521 1173 GNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIV 1252 (1446)
Q Consensus 1173 ~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIv 1252 (1446)
...+..|.++-.+..|..|+.++++..++.... ...| - .+|.+.++++++.=++...++|+|+||+++|||-+||+
T Consensus 293 d~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP--~-P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgII 368 (580)
T COG4618 293 DLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLP--A-PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGII 368 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCC--C-CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEE
Confidence 899999999999999999999999766543221 1111 1 26999999999966556679999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHH
Q 000521 1253 GRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEK 1331 (1446)
Q Consensus 1253 GrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~ 1331 (1446)
||||||||||.++|.|..+|.+|+|.+||-|+++.+.+++-++|||.|||-.||+|||.|||.-|+ +.+++.|.+|.+.
T Consensus 369 GPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~l 448 (580)
T COG4618 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARL 448 (580)
T ss_pred CCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997766 6677889999999
Q ss_pred ccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEe
Q 000521 1332 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITI 1408 (1446)
Q Consensus 1332 ~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~-~~~~TvI~I 1408 (1446)
++.+|.|-.+ ||||.|||+|..|||||||||+||||++.+|++++||||-||||.+-|+.+.++|.+. .+++|+|+|
T Consensus 449 AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvi 528 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528 (580)
T ss_pred cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999 9999999999999999999999999999999999999999999999999999988765 469999999
Q ss_pred ccCchhHhhcCEEEEEeCCEEEEEeccchhhh
Q 000521 1409 AHRISTVLNMDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1409 aHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|||.+.+..+|+|+||++|++..||.......
T Consensus 529 aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa 560 (580)
T COG4618 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLA 560 (580)
T ss_pred ecCHHHHhhcceeeeecCChHHhcCCHHHHHH
Confidence 99999999999999999999999998766543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-55 Score=556.02 Aligned_cols=513 Identities=15% Similarity=0.128 Sum_probs=387.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 896 ITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS----TSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 971 (1446)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~----~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh 971 (1446)
.+++.+++.++...+....+++.+...+.....+ ... ...++++++++.++..+..++...+......+..+++|
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~-~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS-PRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666777776665422111 111 11223334444455555555555666677778888888
Q ss_pred HHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHh-HhHHHHHHHHHHHHHHHH
Q 000521 972 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSY-VQVFFLLLLVPFWFIYSK 1050 (1446)
Q Consensus 972 ~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~pl~~~~~~ 1050 (1446)
++.+++....++.|||+ ++|++.+|+++|++.+.+.+...+..++..++.+++.++.+.. ..|.+.++++...++..+
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 88888888889999997 8899999999999999999988888888888888776665554 555554544444444455
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000521 1051 LQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAA 1130 (1446)
Q Consensus 1051 i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~ 1130 (1446)
+.+++.+..+++.+......+.+.+.+.|.++|.++||+|+.|+.+.+++.+..++..+..+.......++....+++..
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55566666666666666777788899999999999999999999999999999999888888888777777777666543
Q ss_pred HH---HHHHHH-HHHHhhcCCCCcCcccHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccc
Q 000521 1131 FI---ISFIAT-MAVIGSRGNLPATFSTPGL-VGLALSY---AAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEE 1202 (1446)
Q Consensus 1131 ~~---~~~~~~-~~v~~~~~~~~~~~~~~g~-vgl~l~~---~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~ 1202 (1446)
.. +..+.. ..++...+ ...+..+.|. ++..++| +..+..++..+...+.++....++.+|+.++.+.++|.
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~-~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~ 413 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTH-PAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDV 413 (659)
T ss_pred HHHHHHHHHHHHHHHHhccc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 111111 11111110 0012344443 3323333 56668889999999999999999999999999764432
Q ss_pred ccc-------CC-CC--------------CCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHH
Q 000521 1203 LCG-------YQ-SL--------------SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKS 1260 (1446)
Q Consensus 1203 ~~~-------~~-~~--------------~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKS 1260 (1446)
... .. .. .......+.|+++||+++|+++ +++|+|+||+|++||++||+|+||||||
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKS 492 (659)
T TIGR00954 414 KSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKS 492 (659)
T ss_pred hcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHH
Confidence 100 00 00 0001134679999999999643 4699999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCC--------CCCChHHHHHHHHHc
Q 000521 1261 SILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF--------HMNDDLKIWSVLEKC 1332 (1446)
Q Consensus 1261 TLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~--------~~~~d~ei~~aL~~~ 1332 (1446)
||+++|.|+++|++|+|.+|+ |+++++|||+|.+|++|+|||+... ...++++++++++.+
T Consensus 493 TLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~ 561 (659)
T TIGR00954 493 SLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNV 561 (659)
T ss_pred HHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHc
Confidence 999999999999999999874 6789999999999999999999753 234678899999999
Q ss_pred cHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccC
Q 000521 1333 HVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411 (1446)
Q Consensus 1333 ~L~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHr 1411 (1446)
++.++++.- |+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+++.+++. ++|+|+||||
T Consensus 562 ~l~~~~~~~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~ 638 (659)
T TIGR00954 562 QLTHILEREGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHR 638 (659)
T ss_pred CCHHHHhhcCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCc
Confidence 999988766 9999876 46699999999999999999999999999999999999999999999874 8999999999
Q ss_pred chhHhhcCEEEEEeC
Q 000521 1412 ISTVLNMDEILILDH 1426 (1446)
Q Consensus 1412 l~ti~~~DrIlvl~~ 1426 (1446)
++++..||+|++|+.
T Consensus 639 ~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 639 KSLWKYHEYLLYMDG 653 (659)
T ss_pred hHHHHhCCEEEEEeC
Confidence 999999999999973
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=586.05 Aligned_cols=483 Identities=18% Similarity=0.214 Sum_probs=360.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHh
Q 000521 335 YSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQV 413 (1446)
Q Consensus 335 ~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~l 413 (1446)
..+...+.+.+....+...++++.++.+...+...+.|+++|.++.|++.+..... .+..+....+.+++.+.++....
T Consensus 945 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~ 1024 (1490)
T TIGR01271 945 RGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQ 1024 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677778888888999999999999999989999999999999999987554 44555555555555554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 000521 414 KFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTR 493 (1446)
Q Consensus 414 g~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~ 493 (1446)
++..++.++++++.+.+..+..+..+..++.....++...+.+.|.++|+.+||.||+|+.+.++..+.-+...+.....
T Consensus 1025 p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1490)
T TIGR01271 1025 PYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLY 1104 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444445555555666667777888899999999999999999999999888877644322221111
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000521 494 KYLDAWCVFFWAT-TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 572 (1446)
Q Consensus 494 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~ 572 (1446)
.....+....... ...++..+.+ ..+.....+++.+-.++++...+..++..+...+..+..+.+|.+||.+|++.+
T Consensus 1105 ~~~~~wl~~~~~~i~~~~~~~~~~--l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~ 1182 (1490)
T TIGR01271 1105 LSTLRWFQMRIDIIFVFFFIAVTF--IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLP 1182 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111121111111 1111111111 111112345666666677777888899999999999999999999999999765
Q ss_pred CCchhhhhhcCCC--C---cccCCCcc-CCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcH
Q 000521 573 EYKHELEQAANSP--S---YISNGLSN-FNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGK 646 (1446)
Q Consensus 573 e~~~~~~~~~~~~--~---~~~~~~~~-~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGK 646 (1446)
+..+......... . ........ .-+..+.|+++|++|+|+++. +++|+|+||+|++||.++|||++||||
T Consensus 1183 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~----~~vL~~is~~I~~GekvaIvGrSGsGK 1258 (1490)
T TIGR01271 1183 QEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAG----RAVLQDLSFSVEGGQRVGLLGRTGSGK 1258 (1490)
T ss_pred CccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCC----cceeeccEEEEcCCCEEEEECCCCCCH
Confidence 4322100000000 0 00000000 002346799999999997531 346999999999999999999999999
Q ss_pred HHHHHHHhcCccCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHh
Q 000521 647 SSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 713 (1446)
Q Consensus 647 Stll~~llg~~~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~ 713 (1446)
|||+++|+|+++ .+|+|.++| +|+|+||+|.||+|||||||....++++++..++++.|+|.+.+.
T Consensus 1259 STLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~ 1337 (1490)
T TIGR01271 1259 STLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIE 1337 (1490)
T ss_pred HHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHH
Confidence 999999999997 799999987 599999999999999999998766788999999999999999999
Q ss_pred hccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh
Q 000521 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI 793 (1446)
Q Consensus 714 ~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l 793 (1446)
.+|+|.+|.||++|.+||||||||++||||++++|+|+|||||||+||+++++.|.+. +.. ..+++|+|+||||++.+
T Consensus 1338 ~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~-L~~-~~~~~TvI~IaHRl~ti 1415 (1490)
T TIGR01271 1338 QFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT-LKQ-SFSNCTVILSEHRVEAL 1415 (1490)
T ss_pred hCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999876 443 45789999999999999
Q ss_pred hhCCEEEEEeCCEEEEecChhHHHhccccCccc
Q 000521 794 SAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 826 (1446)
Q Consensus 794 ~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 826 (1446)
..+|+|++|++|+|++.|+|+++.+.++.+.++
T Consensus 1416 ~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l 1448 (1490)
T TIGR01271 1416 LECQQFLVIEGSSVKQYDSIQKLLNETSLFKQA 1448 (1490)
T ss_pred HhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHH
Confidence 999999999999999999999998755544444
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-55 Score=531.36 Aligned_cols=480 Identities=23% Similarity=0.300 Sum_probs=332.7
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--eEEEEcCCCC
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPW 678 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--~i~yv~Q~p~ 678 (1446)
.+.++|++.+|.. +++++|+||++.+|+.+++||+|||||||||++|.|+..|++|+|...+ ++||++|+|.
T Consensus 3 ~i~~~~ls~~~g~------~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~ 76 (530)
T COG0488 3 MITLENLSLAYGD------RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP 76 (530)
T ss_pred eEEEeeeEEeeCC------ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence 4678899999842 3459999999999999999999999999999999999999999999986 7999999999
Q ss_pred CCCc-cHHHHHhcCCCCC---hhhHHHHH---------------------HHhcchHHHhhccCC--CcccccCCCCccc
Q 000521 679 ILSG-TIRDNILFGKNYD---PQSYSETL---------------------KACTLDVDISLMVGG--DMAYIGEKGVNLS 731 (1446)
Q Consensus 679 l~~~-ti~~nI~~g~~~~---~~~~~~v~---------------------~~~~l~~di~~~~~g--d~t~ig~~g~~LS 731 (1446)
.... ||+|.+.-+...- ..+|+++. +...++.+++..-.| .... .....+||
T Consensus 77 ~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LS 155 (530)
T COG0488 77 LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLS 155 (530)
T ss_pred cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcC
Confidence 9865 9999998764210 01111111 111122222222222 1111 44557899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEE-E
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK-W 809 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~-~ 809 (1446)
||||.||+|||||..+||+|||||||++||..+.+++-+.+ . ..+| |+|+||||.++|.. |++|+.+++|++. +
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L-~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y 231 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL-K--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPY 231 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH-H--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEe
Confidence 99999999999999999999999999999999999998763 2 2345 99999999999998 9999999999864 6
Q ss_pred ecChhHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHH
Q 000521 810 IGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYA 889 (1446)
Q Consensus 810 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~ 889 (1446)
.|+|+...+..... .... .. ..+..+++.++
T Consensus 232 ~Gny~~~~~~r~~~-------------~~~~--------~~---------------~~~~~~~~~~~------------- 262 (530)
T COG0488 232 KGNYSSYLEQKAER-------------LRQE--------AA---------------AYEKQQKELAK------------- 262 (530)
T ss_pred cCCHHHHHHHHHHH-------------HHHH--------HH---------------HHHHHHHHHHH-------------
Confidence 67777664321000 0000 00 00000000000
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 890 KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 969 (1446)
Q Consensus 890 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1446)
+..|+..
T Consensus 263 ----------------------------~~~~i~r--------------------------------------------- 269 (530)
T COG0488 263 ----------------------------EQEWIRR--------------------------------------------- 269 (530)
T ss_pred ----------------------------HHHHHHH---------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHH
Q 000521 970 VHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYS 1049 (1446)
Q Consensus 970 lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~ 1049 (1446)
+.
T Consensus 270 ----------------------------~~-------------------------------------------------- 271 (530)
T COG0488 270 ----------------------------GK-------------------------------------------------- 271 (530)
T ss_pred ----------------------------HH--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000521 1050 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLA 1129 (1446)
Q Consensus 1050 ~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~ 1129 (1446)
...+++++
T Consensus 272 ----~~~~~~k~-------------------------------------------------------------------- 279 (530)
T COG0488 272 ----AAASKAKK-------------------------------------------------------------------- 279 (530)
T ss_pred ----hccchHHH--------------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--hcCCccccc-c-
Q 000521 1130 AFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEY--MDVPQEELC-G- 1205 (1446)
Q Consensus 1130 ~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~--~~~~~e~~~-~- 1205 (1446)
.+......+|+.+- ...|.+... .
T Consensus 280 ----------------------------------------------------a~sr~k~l~k~~~~~~~~~~~~~~~~~~ 307 (530)
T COG0488 280 ----------------------------------------------------AKSRIKRLEKLEARLAEERPVEEGKPLA 307 (530)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHhhhhhcccccccccce
Confidence 00000111111110 000111000 0
Q ss_pred -CCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeC
Q 000521 1206 -YQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1446)
Q Consensus 1206 -~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1284 (1446)
...+++.-+.+-.++++|+++.|.++ .++++++||.|.+|++|||+||+|+|||||+++|.|-..|.+|+|.+.-
T Consensus 308 ~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~--- 383 (530)
T COG0488 308 FRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE--- 383 (530)
T ss_pred eeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC---
Confidence 00111111224469999999999755 6799999999999999999999999999999999999999999998742
Q ss_pred CCCChHhHhcceEEEeCCCC-CCC-CcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1285 INTPVRDLRGRFAVVPQSPF-LFE-GSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1285 ~~i~~~~lR~~i~~VpQdp~-lF~-gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
.-++||.+|+-. +++ .|+-+++.... ...+.++...|.+.++...- +......||||||-|
T Consensus 384 --------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~--------~~~~v~~LSGGEk~R 447 (530)
T COG0488 384 --------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED--------QEKPVGVLSGGEKAR 447 (530)
T ss_pred --------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH--------HhCchhhcCHhHHHH
Confidence 236999999983 443 38888886544 22366777777776654221 122334699999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEE-eccchh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCI-SFICRY 1438 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~-~~~~~~ 1438 (1446)
+.||+.++.+|++|||||||.+||.+|-+.+.++|.+ |+| |||+|||+.+.+.. |++|+++++ ++.++ |.+..|
T Consensus 448 l~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~G-tvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 448 LLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEG-TVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCC-eEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999999999976 444 99999999999986 899999999 77766 555444
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-55 Score=552.82 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=159.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|++ ..|+++||+|++||.+||+|+||||||||+++|.|+.+|++|+|.++ .+++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 5899999999964 25999999999999999999999999999999999999999999986 1599
Q ss_pred EEeCCCCC-CCCcHHHhcCCCC-CCC-hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1298 VVPQSPFL-FEGSLRDNLDPFH-MND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~VpQdp~l-F~gTIR~NLdp~~-~~~-d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
|+||++.+ ++.|+++|+.... ... +....++ ++.+|++.........||||||||++|||||+++|+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l 474 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI---------IKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL 474 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHHHH---------HHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999875 4569999986431 111 1222333 3444555445556668999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEecc
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~ 1435 (1446)
|||||||++||.++...+.+.|++.. .++|+|+|+|+++.+.. ||||++|++ ++...|..
T Consensus 475 lLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 475 YLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 99999999999999999999998764 37899999999998875 899999964 77766553
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-53 Score=531.99 Aligned_cols=508 Identities=17% Similarity=0.157 Sum_probs=362.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 265 LVRAICCAYGYPYICLGLLKVVNDSIGFAG-PLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLK 343 (1446)
Q Consensus 265 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~ 343 (1446)
+++.+++.+++.++...++.++..++.+.. |++.+.+++.+.. .......+++.+++. .++.....+...+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADT--SLLVLPEFLGLLLLL----MAVTLGSQLALTTLG 76 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 566777888888888888889888888874 7787888886532 111111111111111 223345566677788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Q 000521 344 LKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI 423 (1446)
Q Consensus 344 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v 423 (1446)
.++...+...+|+|.++++...+.+.++|+++|.++.|++.+......+..++...+.+++++++++..-...+++.+++
T Consensus 77 ~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 156 (547)
T PRK10522 77 HHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIW 156 (547)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88888999999999999999988888999999999999999987655566677777776665555444333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 424 TILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYG--WEQIFSSWLMKTRSSEVKHLSTRKYLDAWCV 501 (1446)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g--~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~ 501 (1446)
+++.+.+..++.++..+..++.++..+++.+.+.|.++|++++++.+ .++.+.+++.+..++-.+...+.........
T Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (547)
T PRK10522 157 MAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAV 236 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 44445566777888888888999999999999999999999997433 2234444444432222222112221111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhh
Q 000521 502 FFWATTPTLFSLFTFGLFALMGH---QLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHEL 578 (1446)
Q Consensus 502 ~~~~~~~~~~~~~~f~~~~~~~~---~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~ 578 (1446)
.... +...+.++.+.+.++ ..+.+.+.+...+...+..|+..+...++.+.++..+.+|+.+++..++..+.
T Consensus 237 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~- 311 (547)
T PRK10522 237 NWSN----IMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF- 311 (547)
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-
Confidence 1111 111111222222211 12222222222233346789999999999999999999999999864432110
Q ss_pred hhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc
Q 000521 579 EQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~ 658 (1446)
.. ..+ .+....++++|++|+|+.+ +++|+|+||++++|+.++|+||||||||||+++|+|+++
T Consensus 312 ~~--~~~----------~~~~~~i~~~~v~f~y~~~-----~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 312 PR--PQA----------FPDWQTLELRNVTFAYQDN-----GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred cc--ccc----------cCcCceEEEEEEEEEeCCC-----CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 00 000 0112469999999999632 235999999999999999999999999999999999999
Q ss_pred CCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccC
Q 000521 659 LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725 (1446)
Q Consensus 659 ~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~ 725 (1446)
|++|+|.++| +++||+|+|++|++|++|| +...+++..+++++.+++..++.. ++|. .
T Consensus 375 ~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~ 445 (547)
T PRK10522 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----I 445 (547)
T ss_pred CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----C
Confidence 9999999876 5999999999999999999 455677788888888888776652 3331 2
Q ss_pred CCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeC
Q 000521 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDK 804 (1446)
Q Consensus 726 ~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1446)
+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+ ..... +++|+|+||||++.+..||+|++|++
T Consensus 446 ~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l-~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 524 (547)
T PRK10522 446 SNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVL-LPLLQEMGKTIFAISHDDHYFIHADRLLEMRN 524 (547)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH-HHHHHhCCCEEEEEEechHHHHhCCEEEEEEC
Confidence 48899999999999999999999999999999999999999988763 22122 47899999999999999999999999
Q ss_pred CEEEEe
Q 000521 805 GQVKWI 810 (1446)
Q Consensus 805 G~i~~~ 810 (1446)
|++++.
T Consensus 525 G~i~e~ 530 (547)
T PRK10522 525 GQLSEL 530 (547)
T ss_pred CEEEEe
Confidence 999865
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-53 Score=500.50 Aligned_cols=436 Identities=25% Similarity=0.351 Sum_probs=331.2
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|++-+|+. ..+|+|+||++.+||+++++|.||+|||||+|.|.|.++|++|+|.++|
T Consensus 7 ~ll~~~~i~K~Fgg------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGG------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCC------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 45789999988863 2459999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCCC-------Chhh----HHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKNY-------DPQS----YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~~-------~~~~----~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.|+.|.|++.|++ -||.|||.+|++. |... .+++++..++..| ......+||+|
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~Lsia 149 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIA 149 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHH
Confidence 4999999999875 5999999888753 2222 2233333333211 23345589999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
|||-|+||||++.+++|+|||||||+|+.+..+++|+. +.....+|.++|+|||+++++.. ||+|.||+||+.+..++
T Consensus 150 qrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~-ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 150 QRQMVEIARALSFDARVLILDEPTAALTVKETERLFDL-IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999986 44435578899999999999766 99999999999875432
Q ss_pred h-hHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhh
Q 000521 813 S-ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKF 891 (1446)
Q Consensus 813 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~ 891 (1446)
. .++ +.++.. .
T Consensus 229 ~~~~~------------------------------------------------~~~~lv----------~---------- 240 (500)
T COG1129 229 TAAET------------------------------------------------SEDELV----------R---------- 240 (500)
T ss_pred cccCC------------------------------------------------CHHHHH----------H----------
Confidence 1 100 000000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 892 SGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVH 971 (1446)
Q Consensus 892 ~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh 971 (1446)
++
T Consensus 241 -----------------------------~M------------------------------------------------- 242 (500)
T COG1129 241 -----------------------------LM------------------------------------------------- 242 (500)
T ss_pred -----------------------------Hh-------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHH
Q 000521 972 NTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKL 1051 (1446)
Q Consensus 972 ~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i 1051 (1446)
.|
T Consensus 243 -------------------vG----------------------------------------------------------- 244 (500)
T COG1129 243 -------------------VG----------------------------------------------------------- 244 (500)
T ss_pred -------------------hC-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000521 1052 QFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAF 1131 (1446)
Q Consensus 1052 ~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~ 1131 (1446)
|++
T Consensus 245 --------r~~--------------------------------------------------------------------- 247 (500)
T COG1129 245 --------REL--------------------------------------------------------------------- 247 (500)
T ss_pred --------cch---------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCC
Q 000521 1132 IISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSP 1211 (1446)
Q Consensus 1132 ~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~ 1211 (1446)
.+..++. +.
T Consensus 248 ----------------------------------------------------------------~~~~~~~-------~~ 256 (500)
T COG1129 248 ----------------------------------------------------------------EDLFPEP-------PE 256 (500)
T ss_pred ----------------------------------------------------------------hhhcccc-------cc
Confidence 0000000 00
Q ss_pred CCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC-hH
Q 000521 1212 DWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VR 1290 (1446)
Q Consensus 1212 ~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~ 1290 (1446)
.-+..-.++++|++.. ..++|+||++++||.+||.|=-|||+|-++.+|+|.-++.+|+|.+||.++.--+ .+
T Consensus 257 ~~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~ 330 (500)
T COG1129 257 EGIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRD 330 (500)
T ss_pred cCCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHH
Confidence 0001124667777542 2588999999999999999999999999999999999999999999999886655 55
Q ss_pred hHhcceEEEeCCCC---CC-CCcHHHhcCCCC--CCChH-HHHHHHHHccHHHHHHhCCCchhh-hcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPF---LF-EGSLRDNLDPFH--MNDDL-KIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~---lF-~gTIR~NLdp~~--~~~d~-ei~~aL~~~~L~~~i~~lgLdt~v-~e~G~~LSgGQrQrl 1362 (1446)
..+..|+|||-|-- +| .-||++|+.... .++.. -+...-++.-..++++.++..+.= ...-.+||||.+|++
T Consensus 331 Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKV 410 (500)
T COG1129 331 AIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKV 410 (500)
T ss_pred HHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhH
Confidence 78889999999874 44 559999996431 11100 233334444455667766333221 122237999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEE
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVC 1431 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE 1431 (1446)
+|||.|..+|+||||||||.++|..+.+.|.+.|++.. +|.+||+|+-.+..+. .||||+||.+|+++.
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999875 5899999999999987 699999999999986
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=513.87 Aligned_cols=516 Identities=16% Similarity=0.171 Sum_probs=376.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 276 PYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIY 355 (1446)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy 355 (1446)
.++..+++.++.+++....|++.+.+++.+.+.+... -...++.++++.++.+++.....|...++..++|..+...++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~-f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~ 175 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRN-FAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLY 175 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888999999999999999876432211 111111222233334444444555556666666666666666
Q ss_pred HHHhcC----CccccCCCChhHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhHhHHHH-HHHHHHHHHHHH
Q 000521 356 QKCLYV----RLAERSEFSDGEIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVALYLLYTQVKFAF-VSGLAITILLIP 429 (1446)
Q Consensus 356 ~K~L~l----~~~~~~~~~~g~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~~lL~~~lg~a~-l~~~~v~~~~~~ 429 (1446)
++.++. +...+++ ..|++.+.+++|++.+.+... .+..+...++.++.+++.++..+++.. ++.++.+++...
T Consensus 176 ~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~ 254 (659)
T TIGR00954 176 SKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGV 254 (659)
T ss_pred HHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 666553 3333333 579999999999999988654 456666777777777777776666643 333344455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000521 430 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTP- 508 (1446)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~- 508 (1446)
+..++.+++.+..++..+..++-.+..+|.++|+++||+|+.|+.+.+++++.-++-.+...+.....+....+.....
T Consensus 255 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 334 (659)
T TIGR00954 255 VLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAK 334 (659)
T ss_pred HHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 6777888888999999999999999999999999999999999998888877665555665555555554443332222
Q ss_pred ---HHHHHHHHHHHHHh-C----CCCCHhHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCch
Q 000521 509 ---TLFSLFTFGLFALM-G----HQLDAAMVFT-C---LALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKH 576 (1446)
Q Consensus 509 ---~~~~~~~f~~~~~~-~----~~Lt~~~~ft-~---l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~ 576 (1446)
..+..+..+...+. . +.+|.+..+. . ..++..+..|+..+...+..+.++.++.+||.++++.++..+
T Consensus 335 ~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~ 414 (659)
T TIGR00954 335 YTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVK 414 (659)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222223332222 2 5788886544 2 334677789999999999999999999999999996432110
Q ss_pred hhh-hhcCCCC-----------cccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCC
Q 000521 577 ELE-QAANSPS-----------YISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGS 644 (1446)
Q Consensus 577 ~~~-~~~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~Gs 644 (1446)
... .....+. ....+..........++++|++|.|+.+ +++|+|+||++++||.++|+|||||
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-----~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 415 SGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-----DVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred cccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-----CeeeecceEEECCCCEEEEECCCCC
Confidence 000 0000000 0000000011123469999999988532 2359999999999999999999999
Q ss_pred cHHHHHHHHhcCccCCCcEEEEeC--eEEEEcCCCCCCCccHHHHHhcCC--------CCChhhHHHHHHHhcchHHHhh
Q 000521 645 GKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWILSGTIRDNILFGK--------NYDPQSYSETLKACTLDVDISL 714 (1446)
Q Consensus 645 GKStll~~llg~~~~~~G~i~~~~--~i~yv~Q~p~l~~~ti~~nI~~g~--------~~~~~~~~~v~~~~~l~~di~~ 714 (1446)
|||||+++|+|+++|++|+|.+++ +++||||+|+++++|++|||.++. ..++++..++++.+++++.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999998864 699999999999999999999874 2345677889999999887776
Q ss_pred ccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh
Q 000521 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794 (1446)
Q Consensus 715 ~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 794 (1446)
|.|++|..+ .+.+||||||||++||||++++|++++||||||+||+++++.+.+.+ .. .++|+|++||+++.++
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l-~~---~~~tvI~isH~~~~~~ 643 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC-RE---FGITLFSVSHRKSLWK 643 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH-HH---cCCEEEEEeCchHHHH
Confidence 899999876 56799999999999999999999999999999999999999988763 22 3789999999999999
Q ss_pred hCCEEEEEeC
Q 000521 795 AADMVVVMDK 804 (1446)
Q Consensus 795 ~ad~i~~l~~ 804 (1446)
.||++++|+.
T Consensus 644 ~~d~il~l~~ 653 (659)
T TIGR00954 644 YHEYLLYMDG 653 (659)
T ss_pred hCCEEEEEeC
Confidence 9999999973
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-51 Score=457.12 Aligned_cols=467 Identities=19% Similarity=0.254 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Q 000521 342 LKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSG 420 (1446)
Q Consensus 342 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~-~~~~~~~pl~i~i~~~lL~~~lg~a~l~~ 420 (1446)
.+......+.-..|.++++|+.....+..+|.+..-+.--.+-|....++ +..+....+++++++.++++..||.....
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~ 88 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALT 88 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHH
Confidence 33344445666788999999888777777777665555555555554443 34555667899999999999999876655
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 421 LAITILLIPVNKWI-ANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499 (1446)
Q Consensus 421 ~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e~~~~~~i~~~R~~El~~~~~~~~~~~~ 499 (1446)
.++.+++..+-.+. ...-....++.+++-.+......+.|-+-.++|.||-|+.+..+..+..+.--+...|...-..+
T Consensus 89 t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 89 TLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 55555444332222 23323344444455455566777999999999999999988877766543322222221111111
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchh
Q 000521 500 CVFFWAT--TPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577 (1446)
Q Consensus 500 ~~~~~~~--~~~~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~ 577 (1446)
.++.... ...+....+.+...+..+.+|.+...-.-++...+..|++.+......+-+++...+++.+.+..+-....
T Consensus 169 Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d 248 (497)
T COG5265 169 LNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD 248 (497)
T ss_pred HHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc
Confidence 1111100 11112223334444567899999999999999999999999999999999999999999888865421111
Q ss_pred hhhhcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCc
Q 000521 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~ 657 (1446)
.. ..+.. .....+.+.|++++|.|.++ +++|+++||++++|+.+++||++|+||||++++|.+++
T Consensus 249 ~p---da~~L-------~~~~~g~v~F~~V~F~y~~~-----r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy 313 (497)
T COG5265 249 AP---DAPPL-------WPVRLGAVAFINVSFAYDPR-----RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY 313 (497)
T ss_pred CC---CCccc-------cccccceEEEEEEEeecccc-----chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh
Confidence 10 01110 00234679999999999643 45699999999999999999999999999999999999
Q ss_pred cCCCcEEEEeC-------------eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccc
Q 000521 658 MLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYI 723 (1446)
Q Consensus 658 ~~~~G~i~~~~-------------~i~yv~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~i 723 (1446)
++.+|.|.++| .||.|||+..|||.|+..||.+|++- .++...++.++.++.+.|+.+|+|++|.|
T Consensus 314 D~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~V 393 (497)
T COG5265 314 DVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGV 393 (497)
T ss_pred CCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhccc
Confidence 99999999998 39999999999999999999999874 56778889999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEe
Q 000521 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMD 803 (1446)
Q Consensus 724 g~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~ 803 (1446)
||+|-.||||+|||||+||++.++|+|++|||.|||||.+|++.|... +.. ..+|+|.+++.||++.+-.||.|+||+
T Consensus 394 gerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~-l~~-~~~~rttlviahrlsti~~adeiivl~ 471 (497)
T COG5265 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAA-LRE-VSAGRTTLVIAHRLSTIIDADEIIVLD 471 (497)
T ss_pred chheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHH-HHH-HhCCCeEEEEeehhhhccCCceEEEee
Confidence 999999999999999999999999999999999999999999999876 433 568999999999999999999999999
Q ss_pred CCEEEEecChhHHHhccccCcc
Q 000521 804 KGQVKWIGSSADLAVSLYSGFW 825 (1446)
Q Consensus 804 ~G~i~~~g~~~~l~~~~~~~~~ 825 (1446)
+|+|+|.|+|+|++..++.+.+
T Consensus 472 ~g~i~erg~h~~ll~~~g~ya~ 493 (497)
T COG5265 472 NGRIVERGTHEELLAAGGLYAE 493 (497)
T ss_pred CCEEEecCcHHHHHHcCChHHH
Confidence 9999999999999988765543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=462.03 Aligned_cols=442 Identities=26% Similarity=0.373 Sum_probs=341.4
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..+++++.+-.|+. -.+++||||++++||+.++.|.||+|||||++.|.|.++|++|+|.++|
T Consensus 3 ~~l~~~~itK~f~~------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITKRFPG------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEEEcCC------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 46788999888862 2359999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCC------C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 ---SIAYVPQVPWILSG-TIRDNILFGKNY------D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~-ti~~nI~~g~~~------~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.||.|.|++-|++. ||.|||..|.+- | .++.++..+.++|+-|.+ ++...||=||
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~ 145 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGE 145 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcch
Confidence 49999999998866 999999998753 2 245666777777766543 3455799999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecCh
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 813 (1446)
||||.|-+|||++|++||||||||.|-|...+++|+. +......|+|||+|||+++++.. ||++-||++|+++..-+
T Consensus 146 qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~-l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~- 223 (501)
T COG3845 146 QQRVEILKALYRGARLLILDEPTAVLTPQEADELFEI-LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD- 223 (501)
T ss_pred hHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec-
Confidence 9999999999999999999999999999999999986 33325578999999999999776 99999999999753211
Q ss_pred hHHHhccccCcccccccchhhhhhhhhhhhcccchhhhhhhhccccccCCcchhHHHHHHHHhcCcchhHhHHHHHhhhh
Q 000521 814 ADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSG 893 (1446)
Q Consensus 814 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~y~~~~g 893 (1446)
.. + +. .. ++-. .
T Consensus 224 -~~-----------~---------------------------~~-------t~-----~ela-----~------------ 235 (501)
T COG3845 224 -PV-----------A---------------------------ET-------TE-----EELA-----E------------ 235 (501)
T ss_pred -CC-----------C---------------------------CC-------CH-----HHHH-----H------------
Confidence 00 0 00 00 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhhhhhcccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 894 WFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNT 973 (1446)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ 973 (1446)
++
T Consensus 236 ------------lM------------------------------------------------------------------ 237 (501)
T COG3845 236 ------------LM------------------------------------------------------------------ 237 (501)
T ss_pred ------------Hh------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHH
Q 000521 974 LLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQF 1053 (1446)
Q Consensus 974 ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~ 1053 (1446)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000521 1054 FYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFII 1133 (1446)
Q Consensus 1054 ~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~ 1133 (1446)
T Consensus 238 -------------------------------------------------------------------------------- 237 (501)
T COG3845 238 -------------------------------------------------------------------------------- 237 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCC
Q 000521 1134 SFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDW 1213 (1446)
Q Consensus 1134 ~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~w 1213 (1446)
+ + ... . .+.+ .++.-
T Consensus 238 -------v-G--~~v--~----------------------------------------------~~~~-------~~~~~ 252 (501)
T COG3845 238 -------V-G--REV--V----------------------------------------------LRVV-------KPPST 252 (501)
T ss_pred -------c-C--Ccc--c----------------------------------------------cccc-------cCCCC
Confidence 0 0 000 0 0000 01111
Q ss_pred CCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeC-CCCChHhH
Q 000521 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI-INTPVRDL 1292 (1446)
Q Consensus 1214 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di-~~i~~~~l 1292 (1446)
|..-.++++|++..-+.+ -+.+++|||+|++||.+||.|-.|-|-|-|+.+|.|+..+.+|+|.++|.|+ ...+....
T Consensus 253 pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 223468999999865432 3689999999999999999999999999999999999999999999999997 66677777
Q ss_pred hc-ceEEEeCCCC----CCCCcHHHhcCCCCCCCh-----H-HHHHHHHHccHHHHHHhC-----CCchhhhcCCCCCCh
Q 000521 1293 RG-RFAVVPQSPF----LFEGSLRDNLDPFHMNDD-----L-KIWSVLEKCHVKEEVEAV-----GLETFVKESGISFSV 1356 (1446)
Q Consensus 1293 R~-~i~~VpQdp~----lF~gTIR~NLdp~~~~~d-----~-ei~~aL~~~~L~~~i~~l-----gLdt~v~e~G~~LSg 1356 (1446)
|+ .+++||.|.. ..+-|+.||+-+.....+ - -=|+++++ ...+.++++ +.++++ .+|||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~-~a~~li~~fdVr~~~~~~~a----~~LSG 406 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRK-FARELIEEFDVRAPSPDAPA----RSLSG 406 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHH-HHHHHHHHcCccCCCCCcch----hhcCC
Confidence 65 5999999995 456699999854322111 0 00122221 123344444 333333 37999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1357 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
|+.|++-+||-+.++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-.|+.+.. ||||.||.+|+++....
T Consensus 407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~ 486 (501)
T COG3845 407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVP 486 (501)
T ss_pred cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccc
Confidence 99999999999999999999999999999999999998887664 69999999999999875 99999999999998776
Q ss_pred cch
Q 000521 1435 ICR 1437 (1446)
Q Consensus 1435 ~~~ 1437 (1446)
|+.
T Consensus 487 ~~~ 489 (501)
T COG3845 487 PEE 489 (501)
T ss_pred ccc
Confidence 653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-50 Score=461.14 Aligned_cols=223 Identities=34% Similarity=0.620 Sum_probs=213.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|.|+|+|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.+||+|+.+++..++|+++
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5799999999997656679999999999999999999999999999999999998 789999999999999999999999
Q ss_pred EEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||||+|.+|++|+++|+++++..++++++++++.+++.++++.+ ++|+.++++|.+||+|||||+|||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999988777889999999999999999987 999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|||||||++||+++++.+++.|++.+++||+|+||||++++..||||++|++|+++|+|+|.++.-
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhh
Confidence 999999999999999999999998888999999999999999999999999999999999987643
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=456.53 Aligned_cols=226 Identities=27% Similarity=0.371 Sum_probs=202.0
Q ss_pred CCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeC
Q 000521 1210 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNI 1284 (1446)
Q Consensus 1210 ~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di 1284 (1446)
+.+||..|.|+|+|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|+
T Consensus 72 ~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i 151 (329)
T PRK14257 72 KEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNT 151 (329)
T ss_pred cCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 34699999999999999997555679999999999999999999999999999999999997 5799999999999
Q ss_pred C--CCChHhHhcceEEEeCCCCCCCCcHHHhcCCC---CCCChHHH-----HHHHHHccHHHHHHhCCCchhhhcCCCCC
Q 000521 1285 I--NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDLKI-----WSVLEKCHVKEEVEAVGLETFVKESGISF 1354 (1446)
Q Consensus 1285 ~--~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~---~~~~d~ei-----~~aL~~~~L~~~i~~lgLdt~v~e~G~~L 1354 (1446)
. +++...+|++++||||+|++|++|+++|++++ ...++++. .++++.+++++ ++++.+++.|.+|
T Consensus 152 ~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~l~~~~~~~~~~L 226 (329)
T PRK14257 152 RSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-----EVKDDLDKAGNAL 226 (329)
T ss_pred cccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-----hhhhhhhCCcccC
Confidence 7 45667899999999999999999999999843 23444444 44556665543 4567889999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1355 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
|||||||+|||||++++|+|||||||||+||+++.+.+++.|++.++++|+|+|||+++++.+ ||||+||++|+|+|.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998889999999999999998 9999999999999999
Q ss_pred ccchhhh
Q 000521 1434 FICRYFI 1440 (1446)
Q Consensus 1434 ~~~~~~~ 1440 (1446)
+|..+|.
T Consensus 307 ~~~~l~~ 313 (329)
T PRK14257 307 ETKTIFI 313 (329)
T ss_pred CHHHHhc
Confidence 9998763
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=382.07 Aligned_cols=216 Identities=27% Similarity=0.392 Sum_probs=185.1
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC-CCChHhHhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1296 (1446)
.|+++||+.+|.+. .||||||++|++||.+.||||||||||||+++|.++-+|++|+|.|||.++. ..+...+|+++
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999754 6999999999999999999999999999999999999999999999998874 34789999999
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
|+|+|+..||+- |+-||+.... ..+.+|-.+ + ..+.++..||......-..+||||||||+||||||.-+
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~---~--A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~ 154 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE---K--ALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMD 154 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHH---H--HHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCC
Confidence 999999999986 9999986432 122222111 1 11223333565666667789999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|+|+++|||||+||+|.-..+.+++++.. .|.|+|+|||.+...++ +|||+.||+|+++|.|+|..+|.
T Consensus 155 P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 155 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred CCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 99999999999999999999999998875 58899999999999987 79999999999999999998774
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-45 Score=396.41 Aligned_cols=217 Identities=29% Similarity=0.428 Sum_probs=186.2
Q ss_pred EEEEEEEEEecCC---CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC---hHhH
Q 000521 1219 IEFQNVTMRYKPS---LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDL 1292 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~---~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~l 1292 (1446)
|+++||++.|+.. ...+|+||||+|++||..||+|+||||||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999763 346999999999999999999999999999999999999999999999999987766 5566
Q ss_pred hcceEEEeCCCCCCC-CcHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1293 RGRFAVVPQSPFLFE-GSLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1293 R~~i~~VpQdp~lF~-gTIR~NLdp~---~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
|++||+|+|++-|++ -|+.+|+.+- ...+.+|+.+- ..+.++-.||...-+....+||||||||++|||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~R-----V~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL 156 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR-----VAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL 156 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHH-----HHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence 789999999999998 6999999743 12344444321 11222222777777778889999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
..+|+||+.|||||+||++|.+.|.+.|++.- -|-|+++|||.++.+++ ||||.||++|+|+|.|+.-++|.
T Consensus 157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~ 231 (339)
T COG1135 157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231 (339)
T ss_pred hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhc
Confidence 99999999999999999999999999887653 38899999999999987 99999999999999999988874
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=409.00 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=162.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|.|+||+|.|+++ +..+++++|-|.++++|++|||+|+|||||++++.+.+.|..|.|.-.-. -+++
T Consensus 389 vi~~~nv~F~y~~~-~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN-PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCc-chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 59999999999765 48999999999999999999999999999999999999999998864321 2233
Q ss_pred EEeCC---CCCCCCcHHHhcCC-CC-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1298 VVPQS---PFLFEGSLRDNLDP-FH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1298 ~VpQd---p~lF~gTIR~NLdp-~~-~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+--|. -.-++-|.-+|+.| +. ....+++...|.++||.... .+.++ .+||+|||.|+++||.+++.|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~----q~~p~----~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDA----QVVPM----SQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccc----cccch----hhcccccchhHHHHHHHhcCC
Confidence 33343 33456677777644 23 34567788888888876321 22333 379999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhhhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFIFL 1442 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~~~ 1442 (1446)
.||+|||||++||.+|-....++|.+ |. .+||+|+|+...|.. +++|.+.++|.+.. .+++|.+|.
T Consensus 529 ~lLlLDEPtnhLDi~tid~laeaiNe-~~-Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~--~~G~i~~yk 595 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIETIDALAEAINE-FP-GGVVLVSHDFRLISQVAEEIWVCENGTVTK--WDGDIEIYK 595 (614)
T ss_pred cEEEecCCCcCCCchhHHHHHHHHhc-cC-CceeeeechhhHHHHHHHHhHhhccCceee--cCccHHHHH
Confidence 99999999999999999999999975 44 489999999999987 79999999999864 567777773
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=372.11 Aligned_cols=216 Identities=30% Similarity=0.419 Sum_probs=195.5
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC-----ceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG-----GQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~-----G~I~IDG~di~~--i~~ 1289 (1446)
..++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|.|+.+..+ |+|.+||.||.+ ++.
T Consensus 6 ~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 6 PAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred ceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 46899999999974 469999999999999999999999999999999999999875 999999999976 689
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCCC----C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~----~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+||+++|+|.|.|.-|+.||+||+.++-. . -|+.+.++|+++.||+.+.. .+.+.+..|||||+|||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-----rL~~sa~~LSGGQQQRL 158 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-----RLHKSALGLSGGQQQRL 158 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-----HhhCCccCCChhHHHHH
Confidence 999999999999999999999999986521 1 24557889999999998864 45566778999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||.-+|+||+||||||+||+-+...|.+.|.+..++-||++|||.+.-... +|+...+-.|+++|+|.-...|
T Consensus 159 cIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 159 CIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred HHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 9999999999999999999999999999999999998899999999999987654 7999999999999999877666
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=414.44 Aligned_cols=262 Identities=22% Similarity=0.301 Sum_probs=217.2
Q ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhhhcCCCCcccCCCccCCCCCceEE
Q 000521 524 HQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVI 603 (1446)
Q Consensus 524 ~~Lt~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 603 (1446)
+.++++++|+++++++.+..|+..+|..... ..|+++|+..++.+...... . .+....++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~i~ 82 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKE--D-----------FNHANVFE 82 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccC--C-----------CCcCceEE
Confidence 4789999999999999999999887765433 56999998765532210000 0 12335799
Q ss_pred EEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC----------
Q 000521 604 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---------- 668 (1446)
Q Consensus 604 ~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~---------- 668 (1446)
++|+++.|.... +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 83 ~~nls~~y~~~~----~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 83 IRNFNFWYMNRT----KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred EEeeEEEecCCC----ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 999999996421 246999999999999999999999999999999999996 5799987643
Q ss_pred -----eEEEEcCCCCCCCccHHHHHhcCCCCC----hh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 -----SIAYVPQVPWILSGTIRDNILFGKNYD----PQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 -----~i~yv~Q~p~l~~~ti~~nI~~g~~~~----~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.++||||+||++++|++|||.|+..++ ++ .|+++++.|+|..+++ +.++++|.+||||||
T Consensus 159 ~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqk 231 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQ 231 (329)
T ss_pred HhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHH
Confidence 599999999999999999999874322 22 2677888898866543 678999999999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 814 (1446)
|||+||||++++|+|+||||||||||+++.+++.+. +.. +.+++|+|+|||+++++.. ||+|++|++|+|++.|+++
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~-i~~-l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~ 309 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEEL-ILE-LKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETK 309 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999986654 554 5567899999999999887 9999999999999999999
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
++..
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 9864
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=386.84 Aligned_cols=219 Identities=52% Similarity=0.887 Sum_probs=205.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|.++++|++++|+....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 56899999999975445799999999999999999999999999999999999999999999999999988988999999
Q ss_pred EEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+|+||+|.+|++|+++|++++....++++.++++..++.+.+..+ |+++.+++.+.+||+|||||++||||++++|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999999987666777889999999999998876 999999988999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEecc
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~ 1435 (1446)
++|||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|.+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 9999999999999999999999987778999999999999999999999999999998764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=393.70 Aligned_cols=225 Identities=42% Similarity=0.706 Sum_probs=208.8
Q ss_pred CCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhc
Q 000521 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294 (1446)
Q Consensus 1215 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~ 1294 (1446)
..|.|+++|++++|+.....+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 46789999999999754356999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+++|+||+|.+|++|+++|+++.....+++++++++.+++.+.++.+ |+++.+++.+.+||+|||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876544566788899999999988888 9999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|+|||||++||+++.+.+.+.+++..+++|+|++||+++.+..||||++|++|++++.|.+..+.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLL 242 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999998876789999999999999999999999999999998876543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=385.29 Aligned_cols=221 Identities=34% Similarity=0.535 Sum_probs=202.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+....++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999996544579999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000521 1299 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1375 (1446)
+||++.+|+.|+++|+..... .+.+++.++++..++.+.++.+ |+++..+..+.+||||||||++||||++++|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999999999999986543 3455677778888888888888 8898888888999999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1376 lLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||++||..+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++..++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL 224 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999877789999999999999889999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=376.48 Aligned_cols=207 Identities=45% Similarity=0.837 Sum_probs=187.6
Q ss_pred CCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH
Q 000521 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL 1292 (1446)
Q Consensus 1213 wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l 1292 (1446)
||..+.++++|++++|+....++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 89999999999999997543479999999999999999999999999999999999999999999999999998888889
Q ss_pred hcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1293 RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1293 R~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|++++|+||+|.+|++|+++|+.++...+++++.++++ +++....||+||+||++||||++++|
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998765444444443332 24456789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEecc
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~ 1435 (1446)
+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+..||++++|++|++++.|+|
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999987778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-42 Score=358.34 Aligned_cols=201 Identities=27% Similarity=0.365 Sum_probs=172.8
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.|+++|++-+|.. ..+|+|||++|++||.++|+|||||||||||++|.|+.+|++|+|.++|
T Consensus 2 mi~i~~l~K~fg~------~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLSKSFGD------KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeeeEEeCC------eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 3678888887753 2359999999999999999999999999999999999999999999998
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCC----CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVPWILSG-TIRDNILFGK----NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~-ti~~nI~~g~----~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
++|+|+|+..||+. ||.|||..+. ..+ +++-.+.++..+|.+-.+..| ..||||||||
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQR 144 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQR 144 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHH
Confidence 37899999999976 9999999763 222 234556677777776666555 4899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
|||||||..+|+++|+|||||||||+....+++- +......|.|.|+|||.+.+.+. ||||+.|++|+|+++|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~v-m~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDV-MKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHH-HHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 33324567899999999999987 999999999999999999988
Q ss_pred Hhc
Q 000521 817 AVS 819 (1446)
Q Consensus 817 ~~~ 819 (1446)
..+
T Consensus 224 f~~ 226 (240)
T COG1126 224 FDN 226 (240)
T ss_pred hcC
Confidence 543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=361.91 Aligned_cols=214 Identities=31% Similarity=0.433 Sum_probs=184.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++..+||++|||
T Consensus 2 I~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 799999999973 479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCC-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|=|..-||+- ||.+|+..-. ..+.+++.+- .++.+...|||. ....-...|||||+||+.+||||..+|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 9999999986 9999986321 2344444322 223333337774 344556789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhH-hhcCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTV-LNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti-~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|+++|||.++||+-|...+|+-+.+..+ ++|+|+|||+++.. +-+|||.||++|+++.+|+|.+..
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il 224 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEIL 224 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999999998866532 89999999999975 558999999999999999998654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=393.56 Aligned_cols=220 Identities=24% Similarity=0.348 Sum_probs=187.5
Q ss_pred CCccEEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC----
Q 000521 1215 FQGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT---- 1287 (1446)
Q Consensus 1215 ~~g~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i---- 1287 (1446)
....|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||+++.+.
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 344699999999997432 3699999999999999999999999999999999999999999999999998753
Q ss_pred ------------ChHhHhcceEEEeCCC--CCCCCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhc
Q 000521 1288 ------------PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKE 1349 (1446)
Q Consensus 1288 ------------~~~~lR~~i~~VpQdp--~lF~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e 1349 (1446)
+...+|++++||+|+| .+|++|+++|+.++.. .++++. .++ ..+.++.+|++ ...+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~---~~~--~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEA---KKL--AKFYLNKMGLDDSYLER 172 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHH---HHH--HHHHHHHcCCChhHhcC
Confidence 3567899999999998 6899999999965421 223322 222 23455556886 56778
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCC
Q 000521 1350 SGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHG 1427 (1446)
Q Consensus 1350 ~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G 1427 (1446)
.+.+||||||||++|||||+++|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 888999999999999999999999999999999999999999999998653 5899999999999875 59999999999
Q ss_pred EEEEEeccchhh
Q 000521 1428 HLVCISFICRYF 1439 (1446)
Q Consensus 1428 ~vvE~~~~~~~~ 1439 (1446)
++++.|++..++
T Consensus 253 ~i~~~g~~~~~~ 264 (320)
T PRK13631 253 KILKTGTPYEIF 264 (320)
T ss_pred EEEEeCCHHHHh
Confidence 999999988654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=417.57 Aligned_cols=198 Identities=24% Similarity=0.344 Sum_probs=164.0
Q ss_pred CCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCC-C
Q 000521 1231 SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF-E 1307 (1446)
Q Consensus 1231 ~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF-~ 1307 (1446)
+....|+|||=-++||...|++|.||||||||++.|.+=.. ..+|+|+|||.+..+ +..++++|||.|++.-. .
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 34568999999999999999999999999999999997643 247999999998765 78899999999988644 4
Q ss_pred CcHHHhcCCC------CCCChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC-CEEE
Q 000521 1308 GSLRDNLDPF------HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS-KVLC 1376 (1446)
Q Consensus 1308 gTIR~NLdp~------~~~~d~e----i~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~-~ILl 1376 (1446)
-||||-|.+. .+.+++| +.++++..+|.+.- |..||.-|..||..||.|+.||=-|..|| .||.
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-----daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-----DALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-----hhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 5999998542 2334433 44555555555443 45677777889999999999999999999 8999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchh--HhhcCEEEEEeC-CEEEEEeccc
Q 000521 1377 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GHLVCISFIC 1436 (1446)
Q Consensus 1377 LDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~t--i~~~DrIlvl~~-G~vvE~~~~~ 1436 (1446)
||||||+||+++...|.+.+|+.. .|+||++.-|+++. .+.+|+++.|++ |+.|-+|.+.
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 999999999999999999999875 69999999999985 357999999975 7899887764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=375.89 Aligned_cols=221 Identities=33% Similarity=0.542 Sum_probs=202.3
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+....++++|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999996543469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000521 1299 VPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1375 (1446)
+||+|.+|+.|++||+..+.. .+.+++.+.++.+++.+.++.+ |+++..+....+||+|||||++||||++++|+++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999986543 3455667778888898888887 8888888888899999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1376 lLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||++||..+.+.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++..+.
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 224 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELL 224 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHH
Confidence 9999999999999999999999887889999999999999999999999999999999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=373.97 Aligned_cols=222 Identities=38% Similarity=0.612 Sum_probs=203.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|.|+++|++++|+. ..++++|+||+|++||+++|+|++|||||||+++|.|+++|.+|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 46899999999963 23699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1297 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+|+||+|.+|++|+++|+..+.. ..++++.++++.+++.+.++.+ |+++.++....+||+|||||++|||||+++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999986543 3456778888999999888887 89999988888999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|.+..+.
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999998876789999999999999899999999999999988876554
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=392.53 Aligned_cols=212 Identities=24% Similarity=0.383 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh---Hh
Q 000521 1219 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1293 (1446)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEeCCCCCCC-CcHHHhcCCCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1294 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~-gTIR~NLdp~~---~~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
++|++|||++.+|+ .|+++|+.+.. ..+.+ ++.++++.+ |++.........||||||||++||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v---------gL~~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV---------GLGDKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CCchhhhCChhhCCHHHHHHHHHH
Confidence 89999999999996 69999996421 12222 233444444 554445556678999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||+.+|+||+||||||+||+++.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+++|.|++.++|
T Consensus 153 RAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 153 RALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999988643 7899999999999966 9999999999999999988775
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=370.48 Aligned_cols=217 Identities=37% Similarity=0.524 Sum_probs=197.3
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|.++++|++++|+....++|+|+||+|++||++||+|+||||||||+++|.|+.+|++|+|.+||.++...+...+|+++
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46899999999964334699999999999999999999999999999999999999999999999999888887888999
Q ss_pred EEEeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1297 AVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1297 ~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+|+||+|.+|..|+++|+..... .+++++.++++..++.+.++.. |+++.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999976432 3455677888999998888776 89998888888999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEe
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~ 1433 (1446)
+|||||||++||.++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988889999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=365.71 Aligned_cols=208 Identities=27% Similarity=0.401 Sum_probs=181.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+.. +||+||||+|++||.+||+||+|||||||+++++|+++|++|+|.++|.+++.... |.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 59999999999755 49999999999999999999999999999999999999999999999998876543 57899
Q ss_pred EEeCCC---CCCCCcHHHhcCCCC-----------CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1298 VVPQSP---FLFEGSLRDNLDPFH-----------MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1298 ~VpQdp---~lF~gTIR~NLdp~~-----------~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
||||.. +-|+-||+|-+..+. ..+.+++.+||+++|++++. |-+++ .|||||+||+.
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----~r~i~----~LSGGQ~QRV~ 149 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----DRQIG----ELSGGQKQRVL 149 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----CCccc----ccCcHHHHHHH
Confidence 999955 358899999986542 11247889999999998764 34454 59999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|||||+++|++|+|||||+++|+.++..+.+.|.+..+ ||||++|+|+++.+.+ +|+|+.|+ +++...|.|+..+-
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999999999999999999999999988754 9999999999999876 89999995 56788898887654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=368.89 Aligned_cols=211 Identities=27% Similarity=0.393 Sum_probs=184.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+ ..++|+|+||+|++||.++|+||+|||||||+++|.|+++|.+|+|.+||.|+.+++.+++-++++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999997 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-CCCcHHHhcCCC--------CCCC--hH-HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1298 VVPQSPFL-FEGSLRDNLDPF--------HMND--DL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1298 ~VpQdp~l-F~gTIR~NLdp~--------~~~~--d~-ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
||||++.. |.-||+|-+..+ ...+ |+ .+.+||+.+++.++.+. .-..||||||||+.||
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r---------~~~~LSGGerQrv~iA 150 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR---------PVDELSGGERQRVLIA 150 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC---------cccccChhHHHHHHHH
Confidence 99999754 555998887533 2112 33 46778888888776432 2235999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhH-hhcCEEEEEeCCEEEEEeccchhh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTV-LNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti-~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||.++|+||+||||||+||....-.+.+.+++.. +++|+|+|.|+++.. +.||++++|++|+++..|+|...+
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999998875 479999999999865 568999999999999999998654
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=380.59 Aligned_cols=192 Identities=23% Similarity=0.322 Sum_probs=162.3
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcc
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1295 (1446)
...+++.+|+|.|.|+.++.++++++.++.-+++++||++|.||||+++++.+-..|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 346999999999999877899999999999999999999999999999999999999999988865 889
Q ss_pred eEEEeCCCCCCCCcHHHhc---C----CCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCC-CCCChhHHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFEGSLRDNL---D----PFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESG-ISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1296 i~~VpQdp~lF~gTIR~NL---d----p~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G-~~LSgGQrQrl~LARA 1367 (1446)
|+|-.|.-+=| ..-|. | -+...+++|+.+.|... |++..+...+ ..||||||-|+++|-.
T Consensus 429 i~~f~Qhhvd~---l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~---------Gl~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 429 IKYFAQHHVDF---LDKNVNAVDFMEKSFPGKTEEEIRRHLGSF---------GLSGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred ecchhHhhhhH---HHHHhHHHHHHHHhCCCCCHHHHHHHHHhc---------CCCchhhhccccccCCcchhHHHHHHH
Confidence 99999987632 22222 1 11223788888777655 5565555444 4699999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEE
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCI 1432 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~ 1432 (1446)
.+.+|.+|||||||..||.++-..+-++|+. |.| -||+|+|+.+.+.. |+.++|.++|+|.-+
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~-F~G-GVv~VSHd~~fi~~~c~E~Wvve~g~vt~i 560 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKN-FNG-GVVLVSHDEEFISSLCKELWVVEDGKVTPI 560 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHh-cCC-cEEEEECcHHHHhhcCceeEEEcCCcEEee
Confidence 9999999999999999999999999999975 554 79999999999986 899999999999764
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=371.01 Aligned_cols=220 Identities=37% Similarity=0.611 Sum_probs=201.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+.+ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5789999999643 469999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EeCCCCCCCCcHHHhcCCCC-CCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000521 1299 VPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~-~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1375 (1446)
+||+|.+|++|+++|+.... ..+++++.++++.+++.+.+..+ |+++.+.....+||+|||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997653 34566778888889998888887 8999998888899999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1376 CLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1376 lLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||++||+++.+.+.+.|++..++.|+|+++|+++.+..||++++|++|++++.|.+..+.
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999998776688999999999999999999999999999988876553
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=353.19 Aligned_cols=215 Identities=28% Similarity=0.435 Sum_probs=178.2
Q ss_pred cEEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC-ChHhHhc
Q 000521 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-PVRDLRG 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i-~~~~lR~ 1294 (1446)
.++++|+++.|+... .++|+||||+|.+||.+||+|+||||||||.++|.|+.+|++|+|.+||.+.... +.+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997542 2599999999999999999999999999999999999999999999999776543 3446778
Q ss_pred ceEEEeCCCC--CCC-CcHHHhcC-CCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000521 1295 RFAVVPQSPF--LFE-GSLRDNLD-PFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1295 ~i~~VpQdp~--lF~-gTIR~NLd-p~~~----~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1446)
.+.+|+|||. |=+ -||++-|. |... ...++++++|+.+||.+.. .......||||||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~--------l~R~P~eLSGGQ~QRiaIAR 154 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF--------LDRRPHELSGGQRQRIAIAR 154 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH--------HhcCchhcChhHHHHHHHHH
Confidence 8999999997 222 26666552 3222 2344577788777765432 34456679999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
||.-+|++||+|||||+||....+.|.+.+.+..+ +-|.|+|||+++.+.. ||||+||++|+++|.+.-..++.
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999887665 4599999999999986 99999999999999987766553
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=355.64 Aligned_cols=204 Identities=30% Similarity=0.425 Sum_probs=172.3
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHh
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1293 (1446)
++++||+..|..+. ..+|+|+||+|++||.|+|+||||||||||+++|-++..|++|.|.++|.|+..++-+ .+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996543 3699999999999999999999999999999999999999999999999999999853 344
Q ss_pred -cceEEEeCCCCCCCC-cHHHhcCC---CCCCCh----HHHHHHHHHccHHHHHHhCCCchhhh-cCCCCCChhHHHHHH
Q 000521 1294 -GRFAVVPQSPFLFEG-SLRDNLDP---FHMNDD----LKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1294 -~~i~~VpQdp~lF~g-TIR~NLdp---~~~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~-e~G~~LSgGQrQrl~ 1363 (1446)
++||+|+|+..|++. |++||+.. +..... +...+.++. +||..... .....||||||||+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~---------lgl~~~~~~~~p~eLSGGqqQRVA 152 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEV---------LGLEDRLLKKKPSELSGGQQQRVA 152 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHh---------cCChhhhccCCchhcCHHHHHHHH
Confidence 579999999999876 99999863 222221 122222333 35654444 556789999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEEE
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVC 1431 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE 1431 (1446)
|||||+.+|+|++.||||++||.+|.+.|.+.+++.. .++|+|+|||+......|||++.|.||++.+
T Consensus 153 IARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 153 IARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999998874 3789999999999999999999999999543
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=371.07 Aligned_cols=221 Identities=36% Similarity=0.567 Sum_probs=199.9
Q ss_pred EEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1219 IEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
++++|++++|+.. ..++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4789999999643 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
|+||+|.+|+.|+++|+..... ...+++.+.++..++.+.+..+ |+++..+....+||+|||||++||||++++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999976532 3455677778888888888877 888888888889999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||||||++||+++.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|.+..+.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELM 225 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999998776789999999999999999999999999999988776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=376.86 Aligned_cols=219 Identities=25% Similarity=0.340 Sum_probs=195.8
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+... .++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++|
T Consensus 2 ~i~~~nls~~~~~~~----~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr 76 (275)
T cd03289 2 QMTVKDLTAKYTEGG----NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWR 76 (275)
T ss_pred eEEEEEEEEEeCCCC----CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHh
Confidence 478999999996321 236999999999999999999999999999999999998 799999987
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000521 669 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~ 747 (1446)
.|+||||+|++|++|++||+....++++++..++++.++|+..+..+|++++|.++++|.+||||||||++||||++++
T Consensus 77 ~~i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 77 KAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hhEEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999964345677888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhccccCccc
Q 000521 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWS 826 (1446)
Q Consensus 748 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 826 (1446)
|+|+||||||++||+.+.+.+.+. +.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....+..+
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~-l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKT-LKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHH-HHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 999999999999999999887766 433 34578999999999999899999999999999999999998765444433
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=370.43 Aligned_cols=208 Identities=32% Similarity=0.457 Sum_probs=178.6
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-----CCCCceEEEcCeeCCCCC--hHh
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT-----PICGGQILVDGLNIINTP--VRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~-----~~~~G~I~IDG~di~~i~--~~~ 1291 (1446)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.+||.++.+.+ ...
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 36999999999999999999999999999999999999 999999999999998876 567
Q ss_pred HhcceEEEeCCCCCCCCcHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcC--CCCCChhHHHH
Q 000521 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKES--GISFSVGQRQL 1361 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~gTIR~NLdp~~~----~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~--G~~LSgGQrQr 1361 (1446)
+|++++|+||++.+|..|+++|+.+... .. ++++.++++.. |++...... +.+||||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA---------ALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc---------CCChHHhccCCcccCCHHHHHH
Confidence 8899999999999998899999975321 11 12233334433 554444433 46899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999999999999999999987655899999999998875 89999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=370.42 Aligned_cols=492 Identities=19% Similarity=0.206 Sum_probs=340.8
Q ss_pred HHHhhhhhHhhhhhcccCCC---CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 000521 909 ASRNGNDLWLSYWVDTTGSS---QTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLF 985 (1446)
Q Consensus 909 ~~~~~~~~wl~~w~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~f 985 (1446)
......++|++.|.....+. .........+.+|.+++.+...+...+.++......+.-..+-+.++++-+... .|
T Consensus 57 l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~ 135 (604)
T COG4178 57 LLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RY 135 (604)
T ss_pred HHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ch
Confidence 33344566777775432110 001112233567777777777777778888888888888888888998888777 44
Q ss_pred ccCCChh------HHHHHHHchhhhhccchHHHHHHHHHHHHHHHHhhhhHH--------------hHhH----HHHHHH
Q 000521 986 FDQTPGG------RILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLS--------------YVQV----FFLLLL 1041 (1446)
Q Consensus 986 f~~~~~G------~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~l~~~~~~~--------------~~~~----~~~~~~ 1041 (1446)
|.-...| ..=+|+.+|+...-+..-.....++.++++++....++. +..| +++++.
T Consensus 136 y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Y 215 (604)
T COG4178 136 YRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIY 215 (604)
T ss_pred HHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHH
Confidence 3333222 334688888877665544444445555444443333222 0111 111112
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000521 1042 VPFW-FIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLW 1120 (1446)
Q Consensus 1042 ~pl~-~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w 1120 (1446)
++.. .+..++.+...+..-+..+.|..-|. ...-.-+....|-.|+.|+...++..+..+.-.+.+......+.+
T Consensus 216 a~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~----~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~ 291 (604)
T COG4178 216 AISASLLTHLIGRPLIRLNFERQKLEADFRY----SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIR 291 (604)
T ss_pred HHHHHHHHHHHccccccccHHHHHHHHHHHH----HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 12224445444444444555554443 344556677889999999888877777666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC--
Q 000521 1121 LSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV-- 1198 (1446)
Q Consensus 1121 l~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~-- 1198 (1446)
+...-...+-+.+.+-.+.+. ...-.+..+.|.++.+.....++.+.++|++..+.++.+-...+.|+.++.+.
T Consensus 292 l~~~~~gy~~~s~v~P~li~a----p~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~ 367 (604)
T COG4178 292 LTWFQLGYGWLSVVLPILIAA----PRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALE 367 (604)
T ss_pred hHHhhhhhhHHHHHHHHHhcc----HhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 554433333322211111111 01113456778888888888899999999999999999999999999998732
Q ss_pred ----CccccccCCCCCCC--CCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC
Q 000521 1199 ----PQEELCGYQSLSPD--WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272 (1446)
Q Consensus 1199 ----~~e~~~~~~~~~~~--wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~ 1272 (1446)
+++...... .... -..+..|+|+|++..-+++. ..|+++||+|+|||.+-|.|+||||||||+++|.|+.|-
T Consensus 368 ~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 368 AAQMDTEKPARTG-RRIDFDDNADHGITLENLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred hccCcccccCccc-ccccccccccceeEEeeeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 222111100 0000 00147899999999987654 789999999999999999999999999999999999999
Q ss_pred CCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcC-CCCC--CChHHHHHHHHHccHHHHHHhC-CCchhhh
Q 000521 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD-PFHM--NDDLKIWSVLEKCHVKEEVEAV-GLETFVK 1348 (1446)
Q Consensus 1273 ~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLd-p~~~--~~d~ei~~aL~~~~L~~~i~~l-gLdt~v~ 1348 (1446)
-+|+|..-. -+++-++||.|.+-.||+||-|. |... ++|+++.++|.+|||.+.++++ +.+.
T Consensus 446 g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~--- 511 (604)
T COG4178 446 GSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR--- 511 (604)
T ss_pred CCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc---
Confidence 999987631 24589999999999999999985 4333 7899999999999999999987 4443
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeC
Q 000521 1349 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1426 (1446)
Q Consensus 1349 e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~ 1426 (1446)
-..-||+|||||+++||.+|++|++++||||||+||.++|..+.+.++++..++|+|.|+||.....-.++.+-+++
T Consensus 512 -W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 512 -WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred -HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 33459999999999999999999999999999999999999999999999999999999999887776777666543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=369.00 Aligned_cols=213 Identities=28% Similarity=0.409 Sum_probs=179.6
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh---HhHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1295 (1446)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999963 369999999999999999999999999999999999999999999999999987764 567889
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
++|+||++.+|++ |+++|+.... ..+.++..+. ..+.++.+|++.........||||||||++||||+++
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999986 9999996531 1222222111 1223333455554555556899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999987643 7899999999998875 899999999999999987754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=362.26 Aligned_cols=213 Identities=30% Similarity=0.449 Sum_probs=190.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC-CCChHhHhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII-NTPVRDLRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~-~i~~~~lR~~i 1296 (1446)
.++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 48999999999877 78999999999999999999999999999999999999999999999999998 48899999999
Q ss_pred EEEeCCC--CCCCCcHHHhcCCCCC---CChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1297 AVVPQSP--FLFEGSLRDNLDPFHM---NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1297 ~~VpQdp--~lF~gTIR~NLdp~~~---~~d~e----i~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
++|.|+| .+|..||.+.+.++.. .+.+| +.++|+.+++.+ .......+||||||||+|||.+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~---------~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE---------LLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh---------hccCCccccCCcceeeHHhhHH
Confidence 9999999 6999999999987643 23333 445566665543 3445567899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|..+|+|||||||||+||+...+.+.+.+++..+ ++|+|+|||+++.+.. |||++||++|+++..|.|..+|.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999988754 4799999999999988 99999999999999999987764
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=361.17 Aligned_cols=206 Identities=28% Similarity=0.362 Sum_probs=172.9
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
|++++++..|... ......+|+|+||+|++||+.+|+|.||+|||||++++.++-.|++|+|.++|
T Consensus 2 I~l~~vsK~~~~~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 2 IELENVSKTFGQT-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred eEEEeeeeeeccC-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6788999888753 22234579999999999999999999999999999999999999999999988
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCCC----ChhhHHH---HHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKNY----DPQSYSE---TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~~----~~~~~~~---v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
+||+++|++.|++ .||.|||.|..+. .++..++ .++..+|.+. .+....+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk-----------~~~yP~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDK-----------ADRYPAQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hccCchhcCcchhhH
Confidence 5999999999997 6999999997542 2233444 4444455432 345567999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
|+|||||..+|+|||.|||||||||+|.+.|++.+..-....|-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999986332213346799999999999987 999999999999999999887
Q ss_pred Hhc
Q 000521 817 AVS 819 (1446)
Q Consensus 817 ~~~ 819 (1446)
..+
T Consensus 230 F~~ 232 (339)
T COG1135 230 FAN 232 (339)
T ss_pred hcC
Confidence 543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=354.88 Aligned_cols=191 Identities=31% Similarity=0.390 Sum_probs=162.4
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------eEEE
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 672 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------~i~y 672 (1446)
.+.+++++.+|.. ..+|+|+||+|++||+++|+|||||||||||++|.|+.+|++|+|.++| .+||
T Consensus 3 ~l~i~~v~~~f~~------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 4678888888863 3459999999999999999999999999999999999999999999987 5899
Q ss_pred EcCCCCCCCc-cHHHHHhcCCCCC-------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000521 673 VPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1446)
Q Consensus 673 v~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARal 744 (1446)
|+|++-|++- ||+|||.+|.+.. .++.++.++.++|...-+..| ..|||||||||||||||
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL 145 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARAL 145 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHH
Confidence 9999998875 9999999986541 246777888888876554444 58999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeC--CEEE
Q 000521 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK--GQVK 808 (1446)
Q Consensus 745 y~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~--G~i~ 808 (1446)
..+|+++||||||+|||+.|..++.+.+..-....++|+++|||++++.- -+|||++|.+ |+|.
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999998887744322334689999999999855 5999999998 5553
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=365.71 Aligned_cols=215 Identities=35% Similarity=0.525 Sum_probs=194.3
Q ss_pred CCccEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHh
Q 000521 1215 FQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1215 ~~g~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR 1293 (1446)
..|.++++|++++|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+....|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 45789999999999643 24699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEeCCCCCCCCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1294 GRFAVVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
++++|+||+|.+|++|+++|+++... ....++++..++.++.+.++.+ |+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999985432 2334556666677788888888 89988898889999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEE
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHL 1429 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~v 1429 (1446)
+|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999987778999999999999989999999999975
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=373.04 Aligned_cols=214 Identities=28% Similarity=0.424 Sum_probs=185.0
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++||+.+|++.. +|+|+||+|+.||.++++|||||||||++++|.|+.+|++|+|.|||.|+.++++++ ++|+
T Consensus 3 ~i~l~~v~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 589999999997542 999999999999999999999999999999999999999999999999999999976 7899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCCC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHMN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+|+|+..||+- ||++||.+.-.. +.+++.+..+ +..+.++++..+......||||||||+||||||.++|+
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~-----eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~ 153 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK-----EVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK 153 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHH-----HHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC
Confidence 99999999986 999999875322 3333322211 22233366666777788999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
+++||||.|+||++....+..-|++..+ +.|+|.|||+....+. +|||+||++|+|.+.|+|..+|.
T Consensus 154 v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 154 VFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred EEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 9999999999999999988888876543 6899999999887765 89999999999999999998884
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=371.21 Aligned_cols=215 Identities=26% Similarity=0.416 Sum_probs=184.3
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEEcCeeCCCCChHhHhc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLRG 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR~ 1294 (1446)
.|+++|++++|+. +++|+|+||++++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+.+...+|+
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999963 469999999999999999999999999999999999985 68999999999999888888899
Q ss_pred ceEEEeCCCCCCCCcHHHhcCCCCC---C------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1295 RFAVVPQSPFLFEGSLRDNLDPFHM---N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~gTIR~NLdp~~~---~------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
+++|+||+|.+|+.|+++|+.++.. . .++++.++++.+++.+.+ +....+.+.+||+|||||++||
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv~la 154 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-----KDKLKQNALALSGGQQQRLCIA 154 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-----hHHhcCCcccCCHHHHHHHHHH
Confidence 9999999999999999999975421 0 112344445554443222 1234556678999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||++++|++|+|||||++||.++...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|.+.+++
T Consensus 155 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 155 RALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999988767899999999999886 48999999999999999887654
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=333.53 Aligned_cols=208 Identities=28% Similarity=0.366 Sum_probs=181.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1295 (1446)
|+|+||+.+|+.+ +++|+||||+|++||.+-++|+|||||||++++|++...|++|+|.++|.|++++..+ -||++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999876 7899999999999999999999999999999999999999999999999999887755 48999
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~---~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
||+|.||--|... |+.||+.+-- ..+. +++.++|+.+||.+- ...-...|||||+||+|||||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k---------~~~lP~~LSGGEQQRvaIARA 151 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHK---------ARALPSQLSGGEQQRVAIARA 151 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchh---------hhcCccccCchHHHHHHHHHH
Confidence 9999999988765 9999986431 1222 345567777766544 344466899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhc-CEEEEEeCCEEEEEeccc
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~-DrIlvl~~G~vvE~~~~~ 1436 (1446)
+..+|++||-||||.|||+++...|.+.+.+.- .|.||++.||+.+.+.++ -|++.+++|+++..+...
T Consensus 152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~g 222 (223)
T COG2884 152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222 (223)
T ss_pred HccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccccC
Confidence 999999999999999999999999999997764 599999999999999887 679999999999876543
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=374.30 Aligned_cols=213 Identities=28% Similarity=0.421 Sum_probs=184.3
Q ss_pred cEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1218 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
.++++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEeCCCC--CCCCcHHHhcCCCCC---CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1297 AVVPQSPF--LFEGSLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1297 ~~VpQdp~--lF~gTIR~NLdp~~~---~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
+|+||+|. ++..|+++|+.+... .+. +++.++++.+ |++........+||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LSgGq~qrv~lAra 154 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV---------GMQDFKEREPARLSGGQKQRVAIAGA 154 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC---------CCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 99999983 566799999975321 222 2334444444 55544555567899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++++|++|||||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|.+.+++
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999987643 79999999999999889999999999999999987665
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=367.15 Aligned_cols=211 Identities=33% Similarity=0.477 Sum_probs=183.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999963 36999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEeCCCCCCCCcHHHhcCCCCCCC---hHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFHMND---DLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~gTIR~NLdp~~~~~---d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
|+||+|.+|+.|+++|+....... ++++.+ .++.+|++ .........||||||||++||||++++|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 151 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEY---------YLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPE 151 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHH---------HHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999997532211 222333 33344664 23455667899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 152 VLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999999999998753 37999999999999875 8999999999999999887654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=339.62 Aligned_cols=473 Identities=19% Similarity=0.251 Sum_probs=325.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCChhHHHHHHHchhhhhccchHHHHHHH
Q 000521 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNIL 1016 (1446)
Q Consensus 937 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lh~~ll~~vl~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~ 1016 (1446)
++..|.++..+..+...+.......++.+.-.+++.++.++++.+|+.-+++...++++.++++|+..|.-.. ..+..+
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~-s~lp~~ 128 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAF-SRLPEL 128 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehH-hhhHHH
Confidence 3333444444444455555667778899999999999999999999999999999999999999999998322 233445
Q ss_pred HHHHHHHHHhhhhHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHhHHHHhhcchHHHhhcCcHH--
Q 000521 1017 LANFVGLLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSED-- 1094 (1446)
Q Consensus 1017 ~~~~~~~l~~~~~~~~~~~~~~~~~~pl~~~~~~i~~~y~~~sr~l~~l~~~~~spl~~~~~Etl~Gl~tIraf~~e~-- 1094 (1446)
.+.....+++...+++.+|.+..+.+..+++..+.+...++..-+--+...+....++.+++..++|.+..+...-..
T Consensus 129 ~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~ 208 (546)
T COG4615 129 VQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEY 208 (546)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHH
Confidence 566666778888888888876555444443333322221111111111122334567889999999999988775433
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcccHHHHHHHHHHHHHHHH
Q 000521 1095 YFMAKFKEHVVLYQR----TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVS 1170 (1446)
Q Consensus 1095 ~~~~~~~~~~d~~~~----~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~ 1170 (1446)
.+.+.+...-+...+ ..........|.++.+-.+ +..+..++... .. . +...........+.+-+
T Consensus 209 ~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~l----IGlvf~lal~~---~w--~--st~~a~tivlvlLflr~ 277 (546)
T COG4615 209 VHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGL----IGLVFWLALSL---GW--A--STNVAATIVLVLLFLRT 277 (546)
T ss_pred HHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHhh---cc--c--hhhHHHHHHHHHHHHhh
Confidence 333333221111111 1111112334443322111 11111111110 00 0 11111111122233456
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccCCCCCCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEE
Q 000521 1171 LLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVG 1250 (1446)
Q Consensus 1171 ~l~~~i~~~~~~e~~~~sv~Ri~~~~~~~~e~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~Gekvg 1250 (1446)
++.+++..+..+-++.+|..|+.++...|+.+.-....+.|+|. .||++||.|+|.+.. --+.-||++|+.||.|-
T Consensus 278 pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~~---~lelrnvrfay~~~~-FhvgPiNl~ikrGelvF 353 (546)
T COG4615 278 PLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDWK---TLELRNVRFAYQDNA-FHVGPINLTIKRGELVF 353 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCCCcCCccc---ceeeeeeeeccCccc-ceecceeeEEecCcEEE
Confidence 78888888999999999999999987644332222222334464 599999999997653 45788999999999999
Q ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHH
Q 000521 1251 IVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE 1330 (1446)
Q Consensus 1251 IvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~ 1330 (1446)
|+|.+||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|.-|-+||+.++ .|.+..+.+.+..-|+
T Consensus 354 liG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~Lq 429 (546)
T COG4615 354 LIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQ 429 (546)
T ss_pred EECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998764 3334456666766666
Q ss_pred HccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEe
Q 000521 1331 KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITI 1408 (1446)
Q Consensus 1331 ~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~I 1408 (1446)
+..+.....-. |-... ...||-|||.|+++--|++-+.+|+++||=-+--|+.=.+...+.+-... .||||+.|
T Consensus 430 rLel~~ktsl~--d~~fs--~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aI 505 (546)
T COG4615 430 RLELAHKTSLN--DGRFS--NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAI 505 (546)
T ss_pred HHHHhhhhccc--CCccc--ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEE
Confidence 65554322111 11111 12599999999999999999999999999999999999988877664332 59999999
Q ss_pred ccCchhHhhcCEEEEEeCCEEEEEe
Q 000521 1409 AHRISTVLNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1409 aHrl~ti~~~DrIlvl~~G~vvE~~ 1433 (1446)
||+-.....+||++.|++|+++|.-
T Consensus 506 sHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 506 SHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred ecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999863
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=375.49 Aligned_cols=216 Identities=30% Similarity=0.461 Sum_probs=181.6
Q ss_pred EEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC--hHhHh
Q 000521 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR 1293 (1446)
|+++||+++|++.. .++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 79999999996432 36999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCc--hhhhcCCCCCChhHHHHHHHHH
Q 000521 1294 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE--TFVKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1294 ~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLd--t~v~e~G~~LSgGQrQrl~LAR 1366 (1446)
++++|+||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+|++ +........||||||||++|||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAr 157 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHH
Confidence 9999999998 578899999997532 1233322211 12223333554 4455666789999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|||+|||+++.+. .||||++|++|++++.|.+..++
T Consensus 158 aL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999987643 789999999999985 59999999999999999887664
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=383.09 Aligned_cols=216 Identities=27% Similarity=0.426 Sum_probs=183.6
Q ss_pred EEEEEEEEEecC--CCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh---Hh
Q 000521 1219 IEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1293 (1446)
|+++||+++|+. ...++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 2347999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1294 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
++++||||++.+|+ .|+++|+.... ..++++..+ .+.+.++.+|++........+||||||||++|||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 156 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALA 156 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHH
Confidence 89999999999987 69999996431 122222211 1234444556766666667789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|+||+|||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 157 ~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 157 SNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999987643 7899999999999876 9999999999999999876554
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=363.55 Aligned_cols=213 Identities=26% Similarity=0.383 Sum_probs=178.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++||+++|+....++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.... ..+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEE
Confidence 5789999999643246999999999999999999999999999999999999999999999999987643 667889999
Q ss_pred EeCCCCCC-CCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF-~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||+|.+| ..|+++|+.... ..+.++..+ ...+.++.+|++........+||+|||||++||||++++|++
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV 154 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998 579999986431 112111111 122333334555444555568999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|.+..
T Consensus 155 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 155 LLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999987777999999999999875 89999999999999988753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=362.14 Aligned_cols=212 Identities=26% Similarity=0.394 Sum_probs=179.3
Q ss_pred cEEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh---H
Q 000521 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1292 (1446)
.++++||+++|+.+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 46999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEeCCCCCCCC-cHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1293 R-GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1293 R-~~i~~VpQdp~lF~g-TIR~NLdp~---~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
| ++++|+||+|.+|++ |+++|+.+. .....++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAVGLEHRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 3 679999999999876 999998642 1122221111 12334444567666666677899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEEEEec
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~ 1434 (1446)
++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+..+|++++|++|++++.+.
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999998763 4799999999999999999999999999998664
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=374.65 Aligned_cols=217 Identities=26% Similarity=0.394 Sum_probs=184.3
Q ss_pred cEEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC----ChH
Q 000521 1218 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1290 (1446)
.|+++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 379999999996432 3699999999999999999999999999999999999999999999999999754 346
Q ss_pred hHhcceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000521 1291 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1364 (1446)
.+|++|+|+||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||++ ..+....+||||||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~l 156 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAI 156 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence 7899999999998 588889999996532 1232222221 234455558874 4566778999999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||+.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++.+. .||||++|++|++++.|.+..++
T Consensus 157 araL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 157 VSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999998763 4899999999999985 58999999999999999988765
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=369.60 Aligned_cols=216 Identities=26% Similarity=0.369 Sum_probs=183.5
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CC
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1288 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1288 (1446)
.+.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 11 ~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 11 PSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred CceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 567999999999964 369999999999999999999999999999999999986 479999999999863 45
Q ss_pred hHhHhcceEEEeCCCCCCCCcHHHhcCCCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
...+|++++|+||+|.+|+.|+++|+.+.. ..+. ++++++++.+++.+. ++...++...+|||||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~q 163 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-----VKDKLHQSGYSLSGGQQQ 163 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-----hHHHHhcCCCCCCHHHHH
Confidence 667899999999999999999999997531 1222 234455555544221 123456667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|++||||++++|+||||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 164 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 164 RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999987667899999999999865 899999999999999876654
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=361.20 Aligned_cols=202 Identities=29% Similarity=0.395 Sum_probs=171.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1295 (1446)
++++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|++
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964434699999999999999999999999999999999999999999999999999876543 47889
Q ss_pred eEEEeCCCCCCC-CcHHHhcCCCC---CC----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFE-GSLRDNLDPFH---MN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1296 i~~VpQdp~lF~-gTIR~NLdp~~---~~----~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
++|+||+|.+|. .|+++|+.... .. .++++.++++.+ |++........+||||||||++||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~lara 152 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKV---------GLEGKAHALPMQLSGGEQQRVAIARA 152 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc---------CChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999887 59999996421 11 122344444444 44444444556899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEE
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~v 1429 (1446)
|+++|++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998763 47899999999999875 899999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=347.09 Aligned_cols=203 Identities=25% Similarity=0.376 Sum_probs=172.9
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
|+++|+++.|.. ..+++|+||+|++||+++++|||||||||+|++|.++++|++|+|.++|
T Consensus 2 I~~~nvsk~y~~------~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 2 IEFENVSKRYGN------KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRR 75 (309)
T ss_pred ceeeeeehhcCC------ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHH
Confidence 678999999862 3359999999999999999999999999999999999999999999987
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCC---CCChh----hHHHHHHHhcchH-HHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGK---NYDPQ----SYSETLKACTLDV-DISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~-di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
+||||-|+.-||+. ||.|||..-. .++++ +.++.++..+|+. +. .......|||||+|||.
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~----------~~RyP~eLSGGQQQRVG 145 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEY----------ADRYPHELSGGQQQRVG 145 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHH----------hhcCchhcCcchhhHHH
Confidence 59999999999865 9999998642 35554 4556667777764 22 23456789999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch-hhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
+||||..+|+|+|+||||+||||-+++++-+....-...-++|+|+|||++++ ++-||||.+|++|+|+..++|+++..
T Consensus 146 v~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 146 VARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999988776432223347899999999987 56699999999999999999999986
Q ss_pred cc
Q 000521 819 SL 820 (1446)
Q Consensus 819 ~~ 820 (1446)
+.
T Consensus 226 ~P 227 (309)
T COG1125 226 NP 227 (309)
T ss_pred Cc
Confidence 53
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=366.08 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=182.8
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1297 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999988876654 57799
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCCC-ChHHH-------HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHMN-DDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~~-~d~ei-------~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
|+||+|.+|++ |+++|+...... ....+ ...-......+.++.+|++...+.....||||||||++||||+
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence 99999999987 999998643211 00000 0000111234455556777777777778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+++|++|+|||||++||..+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999999998764 58999999999999876 899999999999999988754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.81 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=174.6
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh----H
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----L 1292 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----l 1292 (1446)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 46999999999999999999999999999999999999999999999999998876433 4
Q ss_pred hcceEEEeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1293 RGRFAVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1293 R~~i~~VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
|++++|+||+|.+|.+ |+++|+..... ....+. ...+.+.++.+|++........+||||||||++||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHH
Confidence 6789999999999987 99999975321 111111 11233445555777666667778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEE
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHL 1429 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~v 1429 (1446)
+++|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999987643 7999999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=362.28 Aligned_cols=213 Identities=25% Similarity=0.392 Sum_probs=179.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1297 (1446)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999964 369999999999999999999999999999999999999999999999999988877654 67899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCCCC-hHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHMND-DLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~~~-d~ei~~aL~~~~L~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
|+||++.+|++ |+++|+.+..... +.+..+. +.+.++.+ +++.........||+|||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 153 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL 153 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 9999996542211 1111111 12223333 355555566678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|.+..+
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 154 LLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999998764 57899999999998765 899999999999999877654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=360.47 Aligned_cols=206 Identities=29% Similarity=0.438 Sum_probs=173.1
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+. .|++++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 478999999964 469999999999999999999999999999999999999999999999999986543 5778999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||+|.+|. .|+++|+..... .+.++..+ ...+.++.+|++........+||||||||++|||||+++|++
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ 151 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL 151 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 599999964311 11111111 122334444666656666678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|++++.|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 152 LLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998764 37899999999998765 8999999999998865
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=340.87 Aligned_cols=218 Identities=26% Similarity=0.408 Sum_probs=185.7
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hH
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1292 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~l 1292 (1446)
+-.|++++|+++|.+ ..||+||||+|++||.+||+|+||||||||++++.|+..|++|+|.|+|.|+.+++.+ .+
T Consensus 6 ~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 6 EPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred cceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 346999999999964 4799999999999999999999999999999999999999999999999999988865 56
Q ss_pred hcceEEEeCCCCCCCC-cHHHhcCC-CCCC---ChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHH
Q 000521 1293 RGRFAVVPQSPFLFEG-SLRDNLDP-FHMN---DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1293 R~~i~~VpQdp~lF~g-TIR~NLdp-~~~~---~d~ei~~aL~~~~L~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LAR 1366 (1446)
|+++|++.|+..||+. ||+||+.+ ..++ +++++.+. ... .++..||... ..--.+.||||.+.|.+|||
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l-v~~----KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL-VLM----KLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH-HHH----HHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 9999999999999987 99999974 3333 44444331 111 1222277766 33456789999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|+.-+|+|+++|||||+||+-+...+-+.|++.. -+.|+|+|||+++++.. ||||+++.+|+|+-.|+|+.+..
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999988887654 38999999999999876 69999999999999999987653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=354.60 Aligned_cols=197 Identities=30% Similarity=0.473 Sum_probs=178.9
Q ss_pred EEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcc
Q 000521 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1295 (1446)
++++||+++|++.. +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 57999999997542 3699999999999999999999999999999999999999999999999 6
Q ss_pred eEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1296 i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
++|+||+|.+|++|+++|+.+....++++.+++++.+++.+.+..+ |+++.+++.+.+||+|||||++||||++++|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999876555666778888898998888877 89999998889999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHH-HHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCE
Q 000521 1374 VLCLDECTANVDAQTASILQN-AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1428 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~-~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1428 (1446)
+++|||||++||.++.+.+.+ .+++.. +++|||++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999877765 566553 4689999999999999999999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=372.48 Aligned_cols=217 Identities=28% Similarity=0.420 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC----CChHh
Q 000521 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1291 (1446)
|+++||+++|++.. +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999963 34567
Q ss_pred HhcceEEEeCCC--CCCCCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000521 1292 LRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1292 lR~~i~~VpQdp--~lF~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1365 (1446)
+|++++||+|+| .+|+.|+.+|+.+... .+.+++.+ ...+.++.+|++ ........+||||||||++||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 899999999998 7899999999975321 22222211 112333334664 234566678999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhhh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|||+.+|+||||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+. .||||++|++|++++.|.|..+|.
T Consensus 157 ~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 157 GILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999998754 4889999999999885 599999999999999999988763
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=363.22 Aligned_cols=212 Identities=27% Similarity=0.367 Sum_probs=178.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999876653 3678999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~~-------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||+|.+|+ .|+++|+.+.... +..+.. ..+.+.++.+|++........+||+|||||++|||||++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999986 5999999753211 111111 112333444466655666667899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|++|||||||++||+++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|.+.+++
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 9999999999999999999999999987643 7899999999998765 8999999999999999887653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=360.44 Aligned_cols=209 Identities=27% Similarity=0.429 Sum_probs=175.3
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 68999999996432 269999999999999999999999999999999999999999999999999976 346778999
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+|+||+|.+|++ |+++|+.... ..+.++..+ ...+.++.+|++........+||||||||++||||++++|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDP 155 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999985321 112111111 1123334446655566667789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++++.|
T Consensus 156 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 156 PVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999998764 47999999999998875 8999999999998864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=365.67 Aligned_cols=213 Identities=28% Similarity=0.388 Sum_probs=180.6
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC---hHhHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~~ 1295 (1446)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4789999999642 46999999999999999999999999999999999999999999999999998876 5667889
Q ss_pred eEEEeCCCCCCC-CcHHHhcCCCCC------------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1296 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1296 i~~VpQdp~lF~-gTIR~NLdp~~~------------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
++|+||++.+|. .|+++|+..... .+++. .....+.++.+|++.........||||||||+
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE------KQRALAALERVGLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHH------HHHHHHHHHHcCChhhhCCCcccCCHHHHHHH
Confidence 999999999887 699999964211 11111 11122334444666556667778999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+||||++++|+||||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|.+..+
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 99999999999999999999999999999999998764 3799999999999998 5899999999999999988754
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=340.89 Aligned_cols=211 Identities=28% Similarity=0.424 Sum_probs=183.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC---hHhHhc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~lR~ 1294 (1446)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|+||||||||+++|.|+.+|++|+|.++|.++...+ ++.+|+
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999997 4568999999999999999999999999999999999999999999999999998888 667788
Q ss_pred ceEEEeCCCCCCCC-cHHHhcCC------------CCCCChH---HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000521 1295 RFAVVPQSPFLFEG-SLRDNLDP------------FHMNDDL---KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1358 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~g-TIR~NLdp------------~~~~~d~---ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQ 1358 (1446)
++|+|.|++-|-+- |+-+|+.. ++-++.+ ...++|+++|+.+. .-.+..+|||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~---------A~qra~~LSGGQ 152 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK---------AYQRASTLSGGQ 152 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH---------HHHHhccCCcch
Confidence 99999999998875 89999742 2334433 34566666666554 234455899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEecc
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~ 1435 (1446)
+||++|||||.++|+|++=|||+|+||+++.+.|++.|++.. .|.|||+.-|.++..++ ||||+=|++|+|+-.|.+
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998764 58999999999999876 799999999999998888
Q ss_pred chh
Q 000521 1436 CRY 1438 (1446)
Q Consensus 1436 ~~~ 1438 (1446)
..+
T Consensus 233 ~el 235 (258)
T COG3638 233 SEL 235 (258)
T ss_pred hhh
Confidence 653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=360.22 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=174.9
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh---Hh
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR 1293 (1446)
++++||+++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 46999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEeCCCCCCC-CcHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1294 -GRFAVVPQSPFLFE-GSLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1294 -~~i~~VpQdp~lF~-gTIR~NLdp~---~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
++++|+||+|.+|+ .|+++|+... ...+..+.. + ...+.++.+|++.........||||||||++||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 156 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK---E--RAYEMLEKVGLEHRINHRPSELSGGERQRVAIARAL 156 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH---H--HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 68999999999986 5999999652 111111111 1 123344455777666666678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEE
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLV 1430 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vv 1430 (1446)
+++|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+..+|+|++|++|+++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999998764 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=347.47 Aligned_cols=178 Identities=32% Similarity=0.548 Sum_probs=166.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+...+++++|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++... ...+|++++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 579999999975434699999999999999999999999999999999999999999999999998776 6678899999
Q ss_pred EeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
+||+|.+|+.|+++|+ ..+||+|||||++||||++++|++|+||
T Consensus 80 ~~q~~~~~~~tv~~~i------------------------------------~~~LS~G~~qrv~laral~~~p~~lllD 123 (178)
T cd03247 80 LNQRPYLFDTTLRNNL------------------------------------GRRFSGGERQRLALARILLQDAPIVLLD 123 (178)
T ss_pred EccCCeeecccHHHhh------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 3479999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEe
Q 000521 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~ 1433 (1446)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|++++.|
T Consensus 124 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 124 EPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999998877789999999999999999999999999998864
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=369.13 Aligned_cols=209 Identities=23% Similarity=0.369 Sum_probs=180.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999632 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCCCCC---CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1298 VVPQSP--FLFEGSLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1298 ~VpQdp--~lF~gTIR~NLdp~~~---~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
|+||+| .+|..|+++|+.+... .+. +++.++++.++ +..........||||||||++|||||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~---------L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR---------MWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC---------CHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 999998 5788999999975321 121 23344444444 44334444557999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccc
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~ 1436 (1446)
+++|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||||++|++|++++.|.+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999998764 4799999999999985 59999999999999999875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=367.70 Aligned_cols=220 Identities=25% Similarity=0.382 Sum_probs=186.0
Q ss_pred CCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--
Q 000521 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN-- 1286 (1446)
Q Consensus 1214 p~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~-- 1286 (1446)
|....|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++..
T Consensus 9 ~~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 9 SKNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred CCCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34457999999999964 369999999999999999999999999999999999987 589999999999863
Q ss_pred CChHhHhcceEEEeCCCCCCCCcHHHhcCCCCC---CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1287 TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1287 i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~---~~---d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
.+..++|++++|+||+|.+|+.|+++|+.+... .. ++++.++++.++++. +++........+||+||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-----ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-----hhhhhhCCCcccCCHHHHH
Confidence 566788999999999999999999999975422 11 234455566555432 2233445556689999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeC-----------CE
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDH-----------GH 1428 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~-----------G~ 1428 (1446)
|++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999987668899999999998865 899999996 67
Q ss_pred EEEEeccchhhh
Q 000521 1429 LVCISFICRYFI 1440 (1446)
Q Consensus 1429 vvE~~~~~~~~~ 1440 (1446)
++|.|.+..++.
T Consensus 242 ~~~~~~~~~~~~ 253 (269)
T PRK14259 242 LVEFNETKKIFN 253 (269)
T ss_pred EEEeCCHHHHHh
Confidence 999999887753
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=365.18 Aligned_cols=214 Identities=29% Similarity=0.410 Sum_probs=182.3
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCch--hhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLET--FVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt--~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+||+|.+|+ .|+++|+..... .+.++. .....+.++.+|++. .......+||+|||||++||||++++|
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p 154 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADP 154 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999986 699999964321 111111 112334455556664 556667789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++|+|||||++||.++.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|.+.++
T Consensus 155 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 223 (242)
T cd03295 155 PLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEI 223 (242)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999998764 37999999999998764 899999999999999887654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-39 Score=367.65 Aligned_cols=216 Identities=24% Similarity=0.415 Sum_probs=184.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+++..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 58999999999644457999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1298 VVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1298 ~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|+||+| .++..|+++|+.+.. ..++++..+ .+.+.++.+|++........+||+|||||++|||||+++|
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNP 161 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999998 455679999997531 123232221 1223344446666666677799999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++|||||||++||..+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|.+..+
T Consensus 162 ~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 162 EIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999987643 4899999999999888999999999999998877654
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=363.76 Aligned_cols=213 Identities=29% Similarity=0.378 Sum_probs=179.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh---HhHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1295 (1446)
|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 2 l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 689999999962 2469999999999999999999999999999999999999999999999999987654 346889
Q ss_pred eEEEeCCCCCCC-CcHHHhcCCCCC------------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1296 FAVVPQSPFLFE-GSLRDNLDPFHM------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1296 i~~VpQdp~lF~-gTIR~NLdp~~~------------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
++|+||++.+|. .|+++|+..... ..+++ .....+.++.+|++........+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED------KERALSALERVGLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHH------HHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 999999999887 599999964211 01110 11123334444666556667778999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+||||++++|++|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|++..+
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 99999999999999999999999999999999998764 37899999999999865 899999999999999988754
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=368.32 Aligned_cols=213 Identities=24% Similarity=0.409 Sum_probs=183.9
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++||+++|+...+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 48999999999654456999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCCCCC---CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1298 VVPQSP--FLFEGSLRDNLDPFHM---NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1298 ~VpQdp--~lF~gTIR~NLdp~~~---~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
|+||+| .+++.|+++|+.+... .+.+ ++.++++.+ ||+..+......||||||||++||||+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LS~G~~qrv~laral 155 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV---------GMEDFLNREPHRLSGGQKQRVAIAGVL 155 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc---------CChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 999998 4667899999975321 1222 233333333 555555555668999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+.+|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|.+..++
T Consensus 156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 156 ALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999987653 78999999999999999999999999999999876543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=366.47 Aligned_cols=215 Identities=27% Similarity=0.389 Sum_probs=182.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1290 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 6999999999964 4699999999999999999999999999999999999997 48999999999864 3456
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~----~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||+|.+|+.|+++|+.+... .+ ++++.++++.+++.+.+ +........+||||||||+
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgG~~qrv 159 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-----KDKLNTNALSLSGGQQQRL 159 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-----HHHHhCCcccCCHHHHHHH
Confidence 77899999999999999999999965321 11 23445556665553222 1223445668999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|.+..++
T Consensus 160 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 160 CIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999988668999999999999865 8999999999999999987664
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=345.40 Aligned_cols=196 Identities=28% Similarity=0.377 Sum_probs=167.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.+++++|+.+|.. ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.+||.++..- ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 4899999999975 5799999999999999999999999999999999999999999999999988433 46799
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCCC---C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~~---~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
||+|++.||+- ||++|+.+.-+. + .+...+.|+.+||. ..-+.....||||||||++|||||+
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~---------~~~~~~P~qLSGGMrQRVaiARAL~ 146 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA---------GFEDKYPHQLSGGMRQRVAIARALA 146 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc---------chhhcCccccChHHHHHHHHHHHHh
Confidence 99999999997 999998654322 1 22344555555554 4445567789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeC--CEE
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDH--GHL 1429 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~--G~v 1429 (1446)
.+|+||+||||.++||+.|...+|+-+.+.. .++||++|||+++... -+|||+||.+ |+|
T Consensus 147 ~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 147 TRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred cCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999887754 3699999999999765 5899999999 544
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=368.95 Aligned_cols=216 Identities=26% Similarity=0.394 Sum_probs=182.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC--CCChHhHhcc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGR 1295 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~ 1295 (1446)
.|+++||+++|++ ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 3446678999
Q ss_pred eEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1296 FAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1296 i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
++|+||+| .+|+.|+++|+.+.. ..+.++.++. ..+.++.+|++........+||+|||||++|||||+.
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~ 158 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVM 158 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999998 578899999996521 1232222221 1223334466555566677899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|+||||||||++||+++.+.+.+.|++..+ ++|||++||+++.+. .||||++|++|++++.|.+.+++
T Consensus 159 ~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 159 EPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999987653 799999999999987 59999999999999999988654
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=362.39 Aligned_cols=213 Identities=26% Similarity=0.401 Sum_probs=181.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.+. +++++|
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGV 78 (236)
T ss_pred EEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 458999
Q ss_pred EeCCCCCC-CCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLF-EGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF-~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.++ ..|+++|+..... .+.++.. ....+.++.+|++...+....+||||||||++||||++++|+|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l 153 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL 153 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999874 5799999965321 1211111 1223445555777767777778999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||||++||.++.+.+.+.|++.. +++|+|++||+++.+..||+|++|++|++++.|.+..++
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999998764 379999999999999889999999999999999886543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=366.47 Aligned_cols=215 Identities=28% Similarity=0.413 Sum_probs=181.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1290 (1446)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999964 369999999999999999999999999999999999975 589999999999975 3455
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||++.+|++|+++|+.+.. ... ++++.++++.+++.+.+ +...+....+||||||||+
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-----KDRLHESALGLSGGQQQRL 158 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHHHHHH
Confidence 7789999999999999999999996421 111 23344555555543322 2234556678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||||||||++||.++.+.+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987667899999999999865 9999999999999999887553
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=362.61 Aligned_cols=215 Identities=28% Similarity=0.394 Sum_probs=180.5
Q ss_pred EEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHh
Q 000521 1219 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1293 (1446)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 12699999999999999999999999999999999999999999999999999877654 347
Q ss_pred cceEEEeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1294 GRFAVVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
++++|+||+|.+|. .|+++|+.... ..+..+.. ....+.++.+|++........+||+|||||++||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 156 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALA 156 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHh
Confidence 89999999999997 59999986421 11111111 11233444456665566666789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++|++|||||||++||..+.+.+.+.|++.. .++|||+|||+++.+.. ||++++|++|++++.|.+.++
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999998764 37899999999999875 899999999999999987654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=378.83 Aligned_cols=214 Identities=22% Similarity=0.323 Sum_probs=180.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+.+ ..+|+|+||+|++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ +++|+
T Consensus 3 ~l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 79 (356)
T PRK11650 3 GLKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIA 79 (356)
T ss_pred EEEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999422 4699999999999999999999999999999999999999999999999999988764 47899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
||||++.+|+. |+++|+.+... .+..+..+ ...+.++.+|++........+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ 154 (356)
T PRK11650 80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPA 154 (356)
T ss_pred EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975422 22222211 11223333355555556667899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+. -||+|++|++|++++.|+|..++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 155 VFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 9999999999999999999999987643 789999999999876 48999999999999999998764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=364.09 Aligned_cols=214 Identities=30% Similarity=0.440 Sum_probs=180.1
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEEcCeeCCCC--ChHh
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PVRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~i--~~~~ 1291 (1446)
++++||+++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++... +...
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 789999999964 35999999999999999999999999999999999999998 99999999999763 4567
Q ss_pred HhcceEEEeCCCCCCCCcHHHhcCCCC---C-CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH---M-NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~gTIR~NLdp~~---~-~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
.|++++|+||++.+|+.|+++|+.... . .+. +++.++++..++.+.++ ........+||||||||++
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~ 154 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-----DRLHDSALGLSGGQQQRLC 154 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-----hHhhCCcccCCHHHHHHHH
Confidence 788999999999999999999996421 1 111 22333344333321110 4455666789999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 155 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 155 IARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999887667899999999998865 8999999999999999886553
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=376.73 Aligned_cols=210 Identities=27% Similarity=0.406 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..|+++|++++|.. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++
T Consensus 5 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 5 NFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred cEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 46999999999963 4699999999999999999999999999999999999999999999999999887753 6789
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC---CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~---~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
++|+|++.+|+. |+++|+.+.-. .+++ ++.++++.+ |++.........||||||||++|||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~---------gl~~~~~r~~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV---------DLAGFEDRYVDQISGGQQQRVALARAL 151 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc---------CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999975421 2222 333444444 454444555678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+++|++|+||||||+||..+.+.+++.|++..+ ++|+|+|||+++.+.. ||||+||++|++++.|+|..++
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999987654 7999999999999865 8999999999999999998765
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=355.30 Aligned_cols=202 Identities=29% Similarity=0.452 Sum_probs=174.1
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++||+++|+. .++|+|+||++++| ++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 579999999964 36999999999999 99999999999999999999999999999999999998777 778999999
Q ss_pred EeCCCCCCCC-cHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~---~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||+|.+|.+ |+++|+.... ..+ ++++.++++.+++.+ .......+||+|||||++||||+++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGD---------RAKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHH---------HHhCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999986421 111 223444555554443 3334445799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
+|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999987667999999999999875 8999999999998865
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=356.01 Aligned_cols=204 Identities=31% Similarity=0.469 Sum_probs=172.9
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+++|++++|+.+..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 47899999965334699999999999999999999999999999999999999999999999999888888889999999
Q ss_pred eCCCC--CCCCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1300 PQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1300 pQdp~--lF~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
||+|. ++..|+++|+..... .++.+..+ ...+.++.+|++.........||||||||++||||++++|++
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l 155 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI 155 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99983 677899999965311 12211111 122334444666556666678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCE
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1428 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1428 (1446)
|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 156 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 156 LLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999998764 37899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=370.19 Aligned_cols=216 Identities=28% Similarity=0.392 Sum_probs=181.2
Q ss_pred EEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC----CChHh
Q 000521 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----TPVRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i~~~~ 1291 (1446)
++++|++++|++.. .++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 79999999996432 469999999999999999999999999999999999999999999999999963 34667
Q ss_pred HhcceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000521 1292 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1292 lR~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1365 (1446)
.|++++|+||+| .+|+.|+++|+.+.. ..+.++..+. ..+.++.+||+. ........||||||||++||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 888999999998 588889999996432 1233322211 223344446653 34556678999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||+.+|++|||||||++||+.+...+.+.|++..+ +.|||+|||+++.+.. ||||++|++|++++.|.+..++
T Consensus 158 raL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 158 GVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIF 234 (290)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999987643 7899999999999864 8999999999999999887654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=353.04 Aligned_cols=201 Identities=25% Similarity=0.378 Sum_probs=171.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++|+|.. +++++|+||++++||+++|+||||||||||||+|.|.++|.+|+|.++|
T Consensus 2 ~L~~~~ls~~y~~------~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGG------KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECC------eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 3678999999963 3459999999999999999999999999999999999999999999998
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhcCCCC-----------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 -SIAYVPQVPWILS-GTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~-~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.+||+||++.... -||+|-+.+|+.. |++...++++.+++++-. ...-.+||||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGer 144 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGER 144 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHH
Confidence 5999999986654 4999999998531 233455667777776432 334568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch-hhhCCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~ 814 (1446)
|||.|||||+++|+|++||||||+||....-++++.+..-...+|+|+|+|+|+++. +.+||++++|++|++..+|+++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence 999999999999999999999999999999999987432223457899999999987 5679999999999999999998
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
|++.
T Consensus 225 evlT 228 (258)
T COG1120 225 EVLT 228 (258)
T ss_pred hhcC
Confidence 8764
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=376.42 Aligned_cols=213 Identities=27% Similarity=0.391 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+. ..+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.+||.++.+.+.+ |++++
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 4899999999964 4689999999999999999999999999999999999999999999999999887764 67899
Q ss_pred EEeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
||+|++.+|+ .|+++|+.+... .+.++.. ....+.++.+||+........+||||||||++|||||+++|+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ 154 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPG 154 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999997 599999975321 1222221 123344455577776777778999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|..++
T Consensus 155 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~ 223 (353)
T TIGR03265 155 LLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIY 223 (353)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999987643 7899999999998764 8999999999999999998765
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=369.12 Aligned_cols=217 Identities=24% Similarity=0.318 Sum_probs=180.5
Q ss_pred cEEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC--------
Q 000521 1218 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN-------- 1286 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~-------- 1286 (1446)
.|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 389999999996432 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHhHhcceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCc-
Q 000521 1287 ----------------TPVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLE- 1344 (1446)
Q Consensus 1287 ----------------i~~~~lR~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLd- 1344 (1446)
.+...+|++++||||+| .+|..|+++|+.+.. ..+.+++.+. ..+.++.+||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~gL~~ 156 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELVGLDE 156 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHcCCCh
Confidence 13457889999999987 678889999997542 1233332221 12233444665
Q ss_pred hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEE
Q 000521 1345 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEIL 1422 (1446)
Q Consensus 1345 t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIl 1422 (1446)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|||+|||+++.+. .||||+
T Consensus 157 ~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 157 SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 34566677899999999999999999999999999999999999999999998753 4899999999999875 599999
Q ss_pred EEeCCEEEEEeccchhh
Q 000521 1423 ILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1423 vl~~G~vvE~~~~~~~~ 1439 (1446)
+|++|++++.|.|.+++
T Consensus 237 vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 237 FFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998765
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=358.85 Aligned_cols=211 Identities=25% Similarity=0.386 Sum_probs=175.4
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh---HhHh
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR 1293 (1446)
|+++||+++|+... +++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 369999999999999999999999999999999999999999999999999988773 5778
Q ss_pred cceEEEeCCC--CCC-CCcHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHH
Q 000521 1294 GRFAVVPQSP--FLF-EGSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1294 ~~i~~VpQdp--~lF-~gTIR~NLdp~----~~~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LA 1365 (1446)
++++|+||+| .++ ..|+++|+... ....+++..+ .+ ..+.++.+|++ ........+||+|||||++||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~---~~-~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARK---EA-VLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHH---HH-HHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 8999999999 344 46999998532 1111111111 00 12344455774 456677778999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEe
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~ 1433 (1446)
||++++|+||||||||++||.++.+.+.+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|
T Consensus 158 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 158 RALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999987653 789999999999988 59999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-39 Score=360.15 Aligned_cols=214 Identities=24% Similarity=0.364 Sum_probs=182.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1297 (1446)
++++||+++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 578999999963 369999999999999999999999999999999999999999999999999988776554 57899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
|+||++.+|++ |+++|+..... ...++.. ..+.+.++.+|++........+||+|||||++||||++++|+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 153 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPK 153 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999987 99999964321 1111111 123344555577766777777899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 154 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 154 FLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999998764 47899999999987765 8999999999999999887654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=371.73 Aligned_cols=215 Identities=27% Similarity=0.367 Sum_probs=180.5
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.|+...+ ...|+++
T Consensus 6 ~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 46999999999964 46999999999999999999999999999999999999999999999999998755 4578999
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+|+||+|.+|. .|++||+.++.. .++.+..+. ..+.++.+|++........+||+|||||++|||||+.+|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P 157 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDP 157 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCC
Confidence 99999999886 599999975332 122222111 122333334443334444579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|+|||||++||+.+.+.+.+.|++.. +++|||++||+++.+.. ||||++|++|++++.|++..+.
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999998864 47899999999999976 9999999999999999987653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=364.94 Aligned_cols=215 Identities=25% Similarity=0.337 Sum_probs=180.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCC--CCChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII--NTPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~--~i~~~ 1290 (1446)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. +.+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4899999999964 4699999999999999999999999999999999999987 4999999999997 45566
Q ss_pred hHhcceEEEeCCCCCCCC-cHHHhcCCCC---C--CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M--NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~g-TIR~NLdp~~---~--~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
.+|++++++||+|.+|++ |+++|+.... . ... +++.++++..++.+.+ .........+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-----KDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-----hhhhccChhhCCHHHHH
Confidence 788999999999999976 9999996421 1 011 2334444444432211 12345556689999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999987667999999999999865 8999999999999999887653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=352.82 Aligned_cols=198 Identities=27% Similarity=0.411 Sum_probs=168.8
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+++|++++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...|++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 468999999642 469999999999999999999999999999999999999999999999999864 4567889999
Q ss_pred eCCC--CCCCCcHHHhcCCCCC-C--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1300 PQSP--FLFEGSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1300 pQdp--~lF~gTIR~NLdp~~~-~--~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
||+| .+|+.|++||+..+.. . .++++.++++.+++ +.........||||||||++||||++++|++
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDL---------YALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCC---------chhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 9998 4678899999975422 1 12345555555554 3334444457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhh-cCEEEEEeCCEEE
Q 000521 1375 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vv 1430 (1446)
|+|||||++||+++.+.+.+.|++. .+++|+|++||+++.+.. ||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999876 357899999999999875 8999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=360.21 Aligned_cols=218 Identities=22% Similarity=0.347 Sum_probs=184.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1297 (1446)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |++++
T Consensus 3 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 789999999964 369999999999999999999999999999999999999999999999999988776654 56799
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCCCChHHH-------HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHMNDDLKI-------WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~~~d~ei-------~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
|+||++.+|++ |+++|+....... ..+ ........+.+.++.+|++.........||||||||++||||++
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~ 159 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRD-KSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLM 159 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcc-cccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 99999999987 9999997532110 000 00011112334445557776667777789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|++|+|||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++..+.
T Consensus 160 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 160 QDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred cCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 999999999999999999999999999987668999999999999975 9999999999999999887653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=353.05 Aligned_cols=202 Identities=27% Similarity=0.387 Sum_probs=174.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++... ..+|+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 578999999953 4699999999999999999999999999999999999999999999999998764 567889999
Q ss_pred EeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.+|+ .|+++|+.++. ..+++++.++++..++.+ ........||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~LS~G~~qrv~la~al~~~p~l 147 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD---------SAKKKVKGFSLGMKQRLGIALALLGNPDL 147 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH---------HHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998875 69999996532 123445566666665543 33444557999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 148 LILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998754 47899999999999875 8999999999998865
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.01 Aligned_cols=218 Identities=27% Similarity=0.385 Sum_probs=183.2
Q ss_pred CCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--C
Q 000521 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1287 (1446)
Q Consensus 1215 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i 1287 (1446)
+.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 16 ~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 16 TEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 3468999999999963 4699999999999999999999999999999999999975 89999999999975 3
Q ss_pred ChHhHhcceEEEeCCCCCCCCcHHHhcCCCC---CC--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhH
Q 000521 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQ 1358 (1446)
Q Consensus 1288 ~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~--~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQ 1358 (1446)
+...+|++++|+||+|.+|++|+++|+.+.. .. + ++++.++++.+++.+.+ ....+....+|||||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq 168 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-----KDRLHEPGTGLSGGQ 168 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-----hHHhhCCcccCCHHH
Confidence 4567889999999999999999999996421 11 1 12334445554443221 123455667899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|||++|||||+.+|++|||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..
T Consensus 169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 248 (267)
T PRK14235 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248 (267)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887667899999999999865 89999999999999998765
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
++
T Consensus 249 ~~ 250 (267)
T PRK14235 249 MF 250 (267)
T ss_pred HH
Confidence 53
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=373.74 Aligned_cols=213 Identities=23% Similarity=0.331 Sum_probs=180.3
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. .|++++
T Consensus 2 ~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 2 SIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 3899999999964 369999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
||||++.+|+. |+++|+.+... .+.++..+ ...+.++.+|++.........||||||||++|||||+
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~ 152 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALA 152 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999999985 99999975421 12122111 1123333345555555666789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|++|+||||||+||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||||++|++|++++.|+|..++
T Consensus 153 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 153 VEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999987653 7899999999998765 8999999999999999998765
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=365.14 Aligned_cols=213 Identities=22% Similarity=0.343 Sum_probs=183.4
Q ss_pred cEEEEEEEEEecCC-CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1218 LIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEeCCC--CCCCCcHHHhcCCCC---CCChHHH----HHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1297 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKI----WSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1297 ~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei----~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
+|+||+| .++..|+.+|+.+.. ..+++++ .++++.+ |++.........||||||||++||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~lAra 154 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV---------NMLDFKTREPARLSGGQKQRVAVAGI 154 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC---------CCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 9999998 467789999997431 1233332 3334444 44444455566899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|.+..++
T Consensus 155 L~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 155 IALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999987643 78999999999999889999999999999999887654
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=356.09 Aligned_cols=207 Identities=30% Similarity=0.372 Sum_probs=172.0
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999996421 469999999999999999999999999999999999999999999999999863 46789
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+|+||+|.+|+ .|+++|+..... .+.++.. ....+.++.+|++........+||||||||++||||++++|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 99999999987 699999864211 1111110 11223344445655555566689999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEe--CCEEEEEecc
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVCISFI 1435 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~--~G~vvE~~~~ 1435 (1446)
+++||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|+ +|+++|.++.
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999998763 37899999999998765 89999999 7999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=321.05 Aligned_cols=206 Identities=24% Similarity=0.393 Sum_probs=178.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|.+++|.++|.. .+. ..+++|++||+|||+|+||||||||++++.||..|.+|+|.|+|+|....++. ++-+++
T Consensus 2 l~L~~V~~~y~~-~~~---~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGH-LPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSM 75 (231)
T ss_pred ccccceEEeeCc-ceE---EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhh
Confidence 567899999964 332 57899999999999999999999999999999999999999999999888775 467999
Q ss_pred EeCCCCCCCC-cHHHhcCCCC----CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFH----MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~----~~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+.||.-||.- ||++|+..+- .. ..+.+..++.++|+..+.+.+ ...||||||||++|||+++|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RL---------P~~LSGGqRQRvALARclvR 146 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRL---------PGELSGGQRQRVALARCLVR 146 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhC---------ccccCchHHHHHHHHHHHhc
Confidence 9999999986 9999987553 22 234577788888877665433 44799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+.+||+||||.|+||+.-.+.+...+.+.. ++.|+++|||.++.+.. +||++++++|||+..|.-+++|
T Consensus 147 ~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 147 EQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred cCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999988887654 57899999999998765 8999999999999999877665
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=360.23 Aligned_cols=207 Identities=26% Similarity=0.384 Sum_probs=184.2
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcc
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~ 1295 (1446)
.+.|+++|+++.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| +
T Consensus 37 ~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 37 DNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 4569999999852 3699999999999999999999999999999999999999999999998 3
Q ss_pred eEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1296 i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
++|+||++.+|++|+++|+.+.....+.++.++++.+++.+.+..+ +.++.+++.+.+||+|||||++||||++++|+
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999865444445667778888888877776 77888888888999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHH-HHHhcCCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~-I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||||++||+++.+.+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|.+..+.
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999888764 45555689999999999999999999999999999999887654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=362.32 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=181.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCCChHhH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVRDL 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~~~~l 1292 (1446)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999998888889
Q ss_pred hcceEEEeCCCCCC-CCcHHHhcCCCCC-----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1293 RGRFAVVPQSPFLF-EGSLRDNLDPFHM-----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1293 R~~i~~VpQdp~lF-~gTIR~NLdp~~~-----~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
|++++|+||+|.+| +.|+++|+.+... .. ++++.++++.+++.+.+ +........+||||||||+
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv 155 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-----KDRLDAPAGKLSGGQQQRL 155 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCCcccCCHHHHHHH
Confidence 99999999999755 5799999964211 01 12344555555443211 1233445568999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|.+.+++
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999988767899999999999986 58999999999999999887654
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=376.53 Aligned_cols=202 Identities=26% Similarity=0.336 Sum_probs=173.3
Q ss_pred CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH----hcceEEEeCCCCCCCC
Q 000521 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG 1308 (1446)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lF~g 1308 (1446)
..+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.|+...+..++ |++++||||++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999998888 7899999999999985
Q ss_pred -cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCC
Q 000521 1309 -SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384 (1446)
Q Consensus 1309 -TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~l 1384 (1446)
|+++|+.+... .+.++..+ ...+.++.+||+...+....+||||||||++|||||+++|+|||||||||+|
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999964321 22222211 1122333336666667777789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1385 DAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1385 D~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|+.+.+.+++.+++.. .++|+|+|||+++.+. -||||++|++|++++.|+|..++
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999998763 3799999999999865 49999999999999999988764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=353.28 Aligned_cols=206 Identities=27% Similarity=0.407 Sum_probs=173.3
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++|
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 578999999964 3699999999999999999999999999999999999999999999999999766543 568999
Q ss_pred EeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.+|. .|+++|+.... ....++..+ .+.+.++.+|++.........||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 59999997531 112222111 112233344666556666678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
++|||||++||+++.+.+.+.|++.. .++|||+|||+++.+.+ ||+|++|++|+++++|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998764 37899999999999876 8999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=365.60 Aligned_cols=218 Identities=28% Similarity=0.432 Sum_probs=185.0
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEEcCeeCCCCChHhHh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~---G~I~IDG~di~~i~~~~lR 1293 (1446)
+.|+++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4699999999996544469999999999999999999999999999999999999987 8999999999888877889
Q ss_pred cceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1294 GRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1294 ~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
++++|+||+| .+++.|+++|+.+.. ..++++..+ ...+.++.+|++........+||+|||||++||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral 158 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGIL 158 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999999998 466889999997531 122322111 112223333555555666678999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+++|++|||||||++||..+.+.+.+.|++..+ ++|||++||+++.+..||+|++|++|++++.|.+.+++
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999987653 78999999999999889999999999999999987664
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=363.65 Aligned_cols=216 Identities=24% Similarity=0.373 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1289 (1446)
..|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 19 IALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred eEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 46999999999953 469999999999999999999999999999999999997 579999999999964 345
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
..+|++++|+||++.+|.+|+++|+.... ..+ ++++.++++.+++.+.+ +...+.....||+|||||
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-----KDDLHKSALTLSGGQQQR 171 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-----hhhhcCCcccCCHHHHHH
Confidence 67889999999999999999999996531 111 12344445555543222 234566677899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++||||++++|++|+|||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 172 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 172 LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999988778999999999998865 9999999999999999887654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=354.46 Aligned_cols=201 Identities=30% Similarity=0.387 Sum_probs=170.8
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh---HhHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV---RDLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~---~~lR~~ 1295 (1446)
++++|++++|+.. +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...|++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 469999999999999999999999999999999999999999999999999987754 357889
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~---~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
++++||+|.+|+. |+++|+.... ..+. +++.++++.+ |++........+||+|||||++||||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV---------GLSHKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CCHHHhhCChhhcCHHHHHHHHHHHH
Confidence 9999999999985 9999996431 1121 2233344443 55544445556899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEE
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~v 1429 (1446)
++++|+++||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|++
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998763 57999999999999986 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=366.47 Aligned_cols=215 Identities=29% Similarity=0.409 Sum_probs=180.9
Q ss_pred EEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC----ChHh
Q 000521 1219 IEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~ 1291 (1446)
|+++||+++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996432 3699999999999999999999999999999999999999999999999999764 3567
Q ss_pred HhcceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHHH
Q 000521 1292 LRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1292 lR~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LA 1365 (1446)
+|++|+|+||+| .+|+.|+++|+.+.. ..++++..+. ..+.++.+|++. ........||||||||++||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 157 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALVGISESLFEKNPFELSGGQMRRVAIA 157 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 889999999998 578899999996421 1222222211 223344447753 45666678999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||++++|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 158 GILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998764 37899999999998865 899999999999999988654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=340.13 Aligned_cols=172 Identities=35% Similarity=0.591 Sum_probs=162.6
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+....++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+.+.+|++++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57899999997544569999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
++|+|.+|++|+++|+ ||+|||||++||||++++|++||||
T Consensus 81 ~~q~~~~~~~tv~~~l---------------------------------------LS~G~~qrv~la~al~~~p~~lllD 121 (173)
T cd03246 81 LPQDDELFSGSIAENI---------------------------------------LSGGQRQRLGLARALYGNPRILVLD 121 (173)
T ss_pred ECCCCccccCcHHHHC---------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999998 9999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCEE
Q 000521 1379 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHL 1429 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~v 1429 (1446)
|||++||..+.+.+.+.|++.. +++|+|+++|+++.+..||+|++|++|++
T Consensus 122 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 122 EPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999998764 47899999999999988999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=332.75 Aligned_cols=204 Identities=25% Similarity=0.348 Sum_probs=173.6
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCC-----cEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH-----GSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~-----G~i~~~~------ 668 (1446)
..++++|.++.|.. +.+|+|||++|+++++++++|||||||||||+++.+..+... |+|.++|
T Consensus 6 ~~~~~~~l~~yYg~------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLNLYYGD------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEecceeEEECc------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 56889999998863 335999999999999999999999999999999999887765 8998877
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCCC-------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 ---------SIAYVPQVPWILSGTIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 ---------~i~yv~Q~p~l~~~ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
+||.|+|.|.-|+.||+|||.+|.... ++..++.++.++|.+... ....+.+..|||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK-------DrL~~sa~~LSG 152 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK-------DRLHKSALGLSG 152 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH-------HHhhCCccCCCh
Confidence 599999999999999999999985321 234666677777765543 234677889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
||+||++||||+.-+|+|+|||||||||||.+..+|-+. +.. +.++-|+|+|||+++.... +|+...+.+|+++|.|
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeL-i~e-Lk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEEL-ITE-LKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHH-HHH-HHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 999999999999999999999999999999998888765 443 5556699999999998765 9999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+.+++-.
T Consensus 231 ~T~~iF~ 237 (253)
T COG1117 231 PTDKIFT 237 (253)
T ss_pred CHHhhhc
Confidence 9888753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=362.59 Aligned_cols=215 Identities=28% Similarity=0.382 Sum_probs=179.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1290 (1446)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4899999999964 469999999999999999999999999999999999997 479999999999864 3455
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCC---CCh-----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---NDD-----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~---~~d-----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|+.++|+||++.+|++|+++|+.+... ..+ +++.++++.++++... ....+....+||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 156 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-----KDNLDRNAQAFSGGQQQRI 156 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-----HHHhccChhhCCHHHHHHH
Confidence 67889999999999999999999975311 111 2233344444332100 1223455668999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+++||||||++||+++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+.+++
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 157 CIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987668999999999999876 8999999999999999887654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=362.27 Aligned_cols=216 Identities=23% Similarity=0.360 Sum_probs=182.3
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|++...++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754446999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEeCCCC--CCCCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1298 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1298 ~VpQdp~--lF~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|+||+|. ++..|+++|+..... ...++..+ .+.+.++.+|++........+||+|||||++||||++++|
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 161 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNP 161 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999994 445689999864321 12222111 1122333345554555566789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++|||||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+..||||++|++|++++.|.+..+
T Consensus 162 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 162 SVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999987643 7899999999999988999999999999999987654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=356.32 Aligned_cols=213 Identities=27% Similarity=0.401 Sum_probs=180.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC--ChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT--PVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i--~~~~lR~~i 1296 (1446)
++++|++++|++ +++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 689999999963 4699999999999999999999999999999999999999999999999999864 345678899
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+|+||++.+|. .|+++|+.+.. ..+.++..+ ...+.++.+|++.........||+|||||++||||++++
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 154 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVK 154 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcC
Confidence 99999999886 59999996431 111221111 123445555777666777778999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|++++|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 155 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999998764 47999999999999865 899999999999999876644
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.50 Aligned_cols=215 Identities=28% Similarity=0.403 Sum_probs=180.0
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC---CCC--CCceEEEcCeeCCCC--ChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL---TPI--CGGQILVDGLNIINT--PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl---~~~--~~G~I~IDG~di~~i--~~~ 1290 (1446)
.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+ ++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 4899999999964 4699999999999999999999999999999999997 454 589999999999764 346
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC---CC-C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~-~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||+|.+|++|+++|+.+.. .. . +++++++++.+++.+.+ +......+.+||||||||+
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 155 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-----KDKLKESAFALSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-----hhhhhCCcccCCHHHHHHH
Confidence 7788999999999999999999996421 11 1 12233444444432211 2345566778999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|.+.+++
T Consensus 156 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 156 CIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999987678999999999999865 8999999999999999888664
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=358.62 Aligned_cols=217 Identities=22% Similarity=0.321 Sum_probs=182.1
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC--------
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT-------- 1287 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i-------- 1287 (1446)
.+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 3 ENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred CccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 467999999999964 3699999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHhHhcceEEEeCCCCCCCC-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhh-hcCCCCCCh
Q 000521 1288 -----PVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSV 1356 (1446)
Q Consensus 1288 -----~~~~lR~~i~~VpQdp~lF~g-TIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v-~e~G~~LSg 1356 (1446)
....+|++++|+||+|.+|++ |+++|+.... ...+.+.. ..+.+.++.+|++... ......||+
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~~LS~ 155 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKVGIDERAQGKYPVHLSG 155 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHcCCChhhhhCCcccCCH
Confidence 135678899999999999985 9999986421 11111111 1123344445666544 556678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1357 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
|||||++|||||+++|+++||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||||++|++|++++.|.
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 235 (257)
T PRK10619 156 GQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGA 235 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998764 48999999999999986 89999999999999998
Q ss_pred cchhh
Q 000521 1435 ICRYF 1439 (1446)
Q Consensus 1435 ~~~~~ 1439 (1446)
+..++
T Consensus 236 ~~~~~ 240 (257)
T PRK10619 236 PEQLF 240 (257)
T ss_pred HHHhh
Confidence 77654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=367.17 Aligned_cols=218 Identities=24% Similarity=0.343 Sum_probs=181.0
Q ss_pred CccEEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC----C-
Q 000521 1216 QGLIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN----T- 1287 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~----i- 1287 (1446)
.|.|+++|++++|+... .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 47799999999996432 259999999999999999999999999999999999999999999999999853 2
Q ss_pred ChHhHhcceEEEeCCC--CCCCCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHH
Q 000521 1288 PVRDLRGRFAVVPQSP--FLFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1288 ~~~~lR~~i~~VpQdp--~lF~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQr 1361 (1446)
+...+|++++|+||+| .+|+.|+++|+.+... ...++..+. +.+.++.+|++ ...+.....||+|||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr 158 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLVQLPEDYVKRSPFELSGGQKRR 158 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence 4567888999999998 4678899999964321 222222211 12333344663 34556667899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++||||++++|++|||||||++||+++.+.+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|.+..+
T Consensus 159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 238 (289)
T PRK13645 159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238 (289)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998764 3789999999999876 4899999999999999887654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=358.21 Aligned_cols=215 Identities=25% Similarity=0.354 Sum_probs=181.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC--------h
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--------V 1289 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--------~ 1289 (1446)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 3899999999964 36999999999999999999999999999999999999999999999999987542 3
Q ss_pred HhHhcceEEEeCCCCCCC-CcHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~-gTIR~NLdp~----~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1446)
..+|++++|+||+|.+|+ .|+++|+... .....++..+ ...+.++.+|++........+||||||||++|
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~l 155 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKVGLAGKETSYPRRLSGGQQQRVAI 155 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCcchhhCChhhCChHHHHHHHH
Confidence 567889999999999886 6999999642 1112211111 12344455577666666777899999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||++++|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 156 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 156 ARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999998764 37899999999999875 8999999999999998876553
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=374.85 Aligned_cols=215 Identities=24% Similarity=0.370 Sum_probs=183.8
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC--ceEEEcCeeCCCCChHhHh
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG--GQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~--G~I~IDG~di~~i~~~~lR 1293 (1446)
.|.|+++||+++|+. ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++ |+|.+||.++.+.+. .+
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred ceEEEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 478999999999964 369999999999999999999999999999999999999999 999999999987765 36
Q ss_pred cceEEEeCCCCCCCC-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1294 GRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~g-TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
+++++|+|++.+|+. |+++|+.+.- ..+++++.+ ...+.++.+||+........+||||||||++|||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~ 153 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIA 153 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHh
Confidence 789999999999986 9999997532 123232222 1223344446666666677789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK---GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~---~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||||++|++|++++.|+|..++
T Consensus 154 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~ 227 (362)
T TIGR03258 154 IEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY 227 (362)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999887543 6899999999998765 8999999999999999988765
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=362.72 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=180.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCC--ChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1290 (1446)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 12 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 6999999999963 4699999999999999999999999999999999999985 799999999998653 345
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
.+|++++|+||++.+|+.|+++|+.+.. ..+.+ ++.++++.+++.+.+ +.........||||||||++
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgG~~qrv~ 164 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-----SDRLKSPALSLSGGQQQRLC 164 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-----hhhhcCChhhCCHHHHHHHH
Confidence 6788999999999999999999996421 12222 234444444432111 23344556689999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||||+++|+||+|||||++||.++.+.+.+.|++..+++|+|+|||+++.+.+ ||+|++|++|++++.|.+..++
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999887668999999999999865 8999999999999999887664
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=363.59 Aligned_cols=214 Identities=27% Similarity=0.425 Sum_probs=179.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1290 (1446)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 21 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 5999999999963 469999999999999999999999999999999999865 689999999999965 3445
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~-~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||+|.+|++|+++|+.... . .. ++.+.++++.+++.+. +....+....+||||||||+
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-----VKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-----hHHHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999986421 1 11 1223344444433211 11334556678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+||||++++|++|||||||++||..+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|.+..+
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999987667899999999998764 899999999999999887654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=360.27 Aligned_cols=215 Identities=28% Similarity=0.417 Sum_probs=180.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1289 (1446)
|.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 57999999999964 3699999999999999999999999999999999999863 69999999999875 455
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCCC----CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~----~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
..+|++++|+||+|.+|+.|+++|+..... .+ ++++.++++.+++.+. +....+....+||+|||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDE-----VKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-----hHHHHhcCCCCCCHHHHHH
Confidence 678999999999999999999999964321 11 2233444444443221 1233455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++||||++++|++|+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999887668999999999998865 899999999999999877654
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=345.39 Aligned_cols=200 Identities=30% Similarity=0.456 Sum_probs=169.2
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------e
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------S 669 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------~ 669 (1446)
..|+++|++++|... ++|+||||++++|++++|+||||||||||+|+|+|.++|.+|+|.+.| +
T Consensus 3 ~~i~v~nl~v~y~~~------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~ 76 (254)
T COG1121 3 PMIEVENLTVSYGNR------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLR 76 (254)
T ss_pred cEEEEeeeEEEECCE------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCe
Confidence 358999999999632 259999999999999999999999999999999999999999999865 5
Q ss_pred EEEEcCCC---CCCCccHHHHHhcCCCC-----------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 670 IAYVPQVP---WILSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 670 i~yv~Q~p---~l~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
||||||.. |=|+.||+|-+..|... |.+..+++++..++. |+. ...-.+|||||+
T Consensus 77 IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~----------~r~i~~LSGGQ~ 145 (254)
T COG1121 77 IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLR----------DRQIGELSGGQK 145 (254)
T ss_pred EEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhh----------CCcccccCcHHH
Confidence 99999954 77889999999987432 346777888888776 332 334457999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1446)
|||-|||||.++||+|+|||||+|+|+.++..+++- +.....+|+||++||||++.+. ++|+|+.|+ +++...|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~l-L~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDL-LKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 999999999999999999999999999999998875 4332334899999999999866 599999994 5778889988
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
+...
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=358.57 Aligned_cols=214 Identities=29% Similarity=0.445 Sum_probs=180.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC----------
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---------- 1288 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---------- 1288 (1446)
|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 579999999964 46999999999999999999999999999999999999999999999999997653
Q ss_pred ---hHhHhcceEEEeCCCCCCC-CcHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1289 ---VRDLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1289 ---~~~lR~~i~~VpQdp~lF~-gTIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
...+|++++++||++.+|+ .|+++|+.... ....++..+ .+.+.++.+|++.........||+||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~q 153 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMVGLADKADHMPAQLSGGQQQ 153 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCChhHhhcChhhcCHHHHH
Confidence 2467889999999999886 69999996421 111111111 2234444556666666777789999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|++||||++++|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.+ ||++++|++|++++.|.+..
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 233 (252)
T TIGR03005 154 RVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDE 233 (252)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999865 89999999999999988776
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
++
T Consensus 234 ~~ 235 (252)
T TIGR03005 234 IF 235 (252)
T ss_pred Hh
Confidence 54
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=347.46 Aligned_cols=204 Identities=52% Similarity=0.902 Sum_probs=181.7
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeCeEEEEcCCCCCCC
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~~i~yv~Q~p~l~~ 681 (1446)
++++|+++.|..... +..++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~-~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQ-ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCc-cccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhcc
Confidence 357899999864210 0024699999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCccccc
Q 000521 682 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD 761 (1446)
Q Consensus 682 ~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD 761 (1446)
.|++||+.++..+++++..++.+.+++...+..+|.|+++..++++.+||||||||++||||++.+|++++|||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999987777777788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 762 AQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 762 ~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
++..+.+++.++.....+++|+|++||+++.+..||++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999898887544322234689999999999988899999999984
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=356.47 Aligned_cols=210 Identities=25% Similarity=0.380 Sum_probs=177.3
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh-HhcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i~ 1297 (1446)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .+++++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCC-CC--ChHH-HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFH-MN--DDLK-IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~-~~--~d~e-i~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|+||++.+|++ |+++|+.... .. .+++ ..++++..+ +++........+||||||||++||||++++|
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~--------~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP--------VLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH--------hHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999986 9999996431 11 1111 122222221 2344455566689999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++++|||||++||..+.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999987653 7899999999999986 899999999999999887654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=353.12 Aligned_cols=207 Identities=27% Similarity=0.386 Sum_probs=175.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-HHHhhcEEE
Confidence 578999999964 46999999999999999999999999999999999999999999999999987633 567889999
Q ss_pred EeCCCCCCCC-cHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~---~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||++.++++ |+++|+.... ..+ ++++.++++.. |++.........||||||||++||||++.
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV---------GLLEAADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999998875 9999986421 111 22334444444 44433444455799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
+|++|||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|.+..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999987642 7899999999999875 89999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=371.83 Aligned_cols=217 Identities=24% Similarity=0.382 Sum_probs=181.0
Q ss_pred cEEEEEEEEEecCC-----------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC
Q 000521 1218 LIEFQNVTMRYKPS-----------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1286 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~-----------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~ 1286 (1446)
-++++|++++|+.. ...+++|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 58999999999631 2469999999999999999999999999999999999999999999999999998
Q ss_pred CChHh---HhcceEEEeCCC--CCCC-CcHHHhcCC----CC-CCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCC
Q 000521 1287 TPVRD---LRGRFAVVPQSP--FLFE-GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISF 1354 (1446)
Q Consensus 1287 i~~~~---lR~~i~~VpQdp--~lF~-gTIR~NLdp----~~-~~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~L 1354 (1446)
++.++ +|++++||+||| .+++ .||++|+.. +. ..+.++..+. ..+.++.+|++ .........|
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCChHHhcCCcccC
Confidence 87554 678999999999 4774 699999852 11 1233332221 12333444663 2345666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEE
Q 000521 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVC 1431 (1446)
Q Consensus 1355 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE 1431 (1446)
|||||||++|||||+.+|++||+||||++||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987643 7899999999999976 99999999999999
Q ss_pred Eeccchhh
Q 000521 1432 ISFICRYF 1439 (1446)
Q Consensus 1432 ~~~~~~~~ 1439 (1446)
.|.+.+++
T Consensus 243 ~g~~~~i~ 250 (331)
T PRK15079 243 LGTYDEVY 250 (331)
T ss_pred EcCHHHHH
Confidence 99887665
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=361.14 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=179.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEEcCeeCCCC--ChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~i--~~~ 1290 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 4899999999964 369999999999999999999999999999999999853 6 499999999999653 345
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCC----CCCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPF----HMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~----~~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|+.++|+||+|.+|+.|+++|+.+. +... ++++.++++.+++.+.+ .+..+....+||+|||||+
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 157 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-----KDRLHDSALGLSGGQQQRV 157 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-----HHHHhcCcccCCHHHHHHH
Confidence 678899999999999999999998642 1111 12334445555443211 2344566678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|.+.+++
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 158 CIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999887667999999999998865 8999999999999999877653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=357.06 Aligned_cols=215 Identities=26% Similarity=0.394 Sum_probs=183.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh-Hhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1296 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 3 TLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred eEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 3889999999963 46999999999999999999999999999999999999999999999999998877644 57889
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCCC----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHMN----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~~----~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+++||++.+|++ |+++|+...... +.++. +....+.++.+|++.........||+|||||++||||++++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAAN 155 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcC
Confidence 999999998885 999999754211 11111 11233455555777766777778999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++|||||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||+|++|++|++++.|.+.+++
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999999999999999887653 48899999999987754 8999999999999999988664
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=361.98 Aligned_cols=215 Identities=27% Similarity=0.410 Sum_probs=181.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC-hHhHhcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDLRGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~lR~~i~ 1297 (1446)
++++|++++|+++ +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...+|++++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999633 45999999999999999999999999999999999999999999999999998765 467788999
Q ss_pred EEeCCCC--CCCCcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1298 VVPQSPF--LFEGSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1298 ~VpQdp~--lF~gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|+||+|. +++.|+++|+.+... .+.++..+. +.+.++.+|++.........||+|||||++||||++++|
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 155 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEP 155 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999985 567899999975421 122221111 122333446665566666789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||||||++||+.+...+.+.+++.. +++|+|++||+++.+..||+|++|++|++++.|.+..++
T Consensus 156 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 156 ECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999998754 489999999999999889999999999999999887654
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=359.33 Aligned_cols=217 Identities=23% Similarity=0.354 Sum_probs=180.7
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEEcCeeCCCC--C
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIINT--P 1288 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~i--~ 1288 (1446)
+|.|+++|++++|+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ | ++|+|.+||.++... .
T Consensus 2 ~~~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 2 NNKVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred CcEEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 467999999999963 469999999999999999999999999999999999986 3 589999999999754 3
Q ss_pred hHhHhcceEEEeCCCCCCC-CcHHHhcCCC----CCCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHH
Q 000521 1289 VRDLRGRFAVVPQSPFLFE-GSLRDNLDPF----HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1359 (1446)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lF~-gTIR~NLdp~----~~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQr 1359 (1446)
...+|++++|+||++.+|. .|+++|+... +..+. +++.++++.+++.+.+ +...+....+||+|||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~ 154 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-----KDRLKSNAMELSGGQQ 154 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hHHhhCCcCcCCHHHH
Confidence 4567899999999999998 5999999642 11111 2233344444432211 1234455678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1360 Qrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||++||||++++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.. ||+|++|++|++++.|++..+
T Consensus 155 qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 155 QRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999865 999999999999999988765
Q ss_pred h
Q 000521 1439 F 1439 (1446)
Q Consensus 1439 ~ 1439 (1446)
+
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 3
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=352.09 Aligned_cols=204 Identities=26% Similarity=0.423 Sum_probs=172.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ..|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 56789999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.+|++ |+++|+..... .+..+. ...+.+.++.+|++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ 149 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL 149 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999886 99999864321 111111 11233444555776666666778999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
+||||||++||+++.+.+.+.|++.. +++|+|+|+|+++.+.. ||+|++|++|++++.|
T Consensus 150 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 150 LILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999998754 47899999999999865 8999999999998864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=361.97 Aligned_cols=203 Identities=32% Similarity=0.412 Sum_probs=174.5
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|++..|... . +++|+||+|++||+++++|||||||||||++|.|+.+|++|+|.++| .
T Consensus 3 ~i~l~~v~K~yg~~-----~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~ 76 (338)
T COG3839 3 ELELKNVRKSFGSF-----E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRG 76 (338)
T ss_pred EEEEeeeEEEcCCc-----e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCC
Confidence 47899999998632 1 59999999999999999999999999999999999999999999987 5
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCCCC-------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKNYD-------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~~~-------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
||+|+|+.-|++. ||+|||.||.... +++.+++.+..++++.++..| ..||||||||||||
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAla 145 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALA 145 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHH
Confidence 9999999999976 9999999986542 457778888888887766544 58999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHhcc
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVSL 820 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~~ 820 (1446)
||+.++|+++|||||+|+||++....+-..+..-....+.|+|.||||..+.. .||+|++|++|+|.+.|++.|+....
T Consensus 146 RAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 146 RALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred HHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 99999999999999999999998887766532211223579999999987754 59999999999999999999997543
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=375.35 Aligned_cols=213 Identities=27% Similarity=0.371 Sum_probs=179.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 3 ~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~ 78 (369)
T PRK11000 3 SVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVG 78 (369)
T ss_pred EEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
||||++.+|+. |+++|+.+... .+.++..+ ...+.++.+|++........+||||||||++|||||+++|+
T Consensus 79 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~ 153 (369)
T PRK11000 79 MVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS 153 (369)
T ss_pred EEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999975 99999975321 22222111 12233334456555555666899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||||||+||.++.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|..++
T Consensus 154 lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 154 VFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999987643 7899999999998765 8999999999999999988765
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=349.72 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=172.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh---Hhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---lR~~ 1295 (1446)
|+++|++++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+++... +|++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999532 46999999999999999999999999999999999999999999999999998876543 6889
Q ss_pred eEEEeCCCCCC-CCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1296 FAVVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1296 i~~VpQdp~lF-~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
++|+||+|.+| ..|+++|+.... ..++++..+. ..+.++.+|++........+||+|||||++||||++++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNK 155 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999999875 569999997531 1222222211 12223333555445556678999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEE
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVC 1431 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE 1431 (1446)
|++|||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 156 PAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999998763 47899999999999976 89999999999863
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=355.00 Aligned_cols=215 Identities=24% Similarity=0.374 Sum_probs=178.9
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh-Hhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1296 (1446)
.|+++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+... .|+++
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998887654 67889
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+|+||++.+|++ |+++|+..... .+.++..+.+ .+.++.+ +++.........||+|||||++||||++++|+
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPR 157 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999999985 99999965321 1222222111 1222222 23333344556799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||||++||.++.+.+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|++..++
T Consensus 158 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 158 LLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999999998754 4899999999999775 48999999999999999987664
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=361.39 Aligned_cols=218 Identities=28% Similarity=0.368 Sum_probs=183.8
Q ss_pred CCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--C
Q 000521 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--T 1287 (1446)
Q Consensus 1215 ~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i 1287 (1446)
..+.++++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .
T Consensus 22 ~~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 22 EQTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CCcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 3457999999999964 3699999999999999999999999999999999999884 89999999999975 3
Q ss_pred ChHhHhcceEEEeCCCCCCCCcHHHhcCCCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHH
Q 000521 1288 PVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1359 (1446)
Q Consensus 1288 ~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~-~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQr 1359 (1446)
+...+|++++|+||++.+|++|+++|+.+.. . .. ++++.++++.+++.+.+ .+..+..+.+||+|||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-----KDRLHENAFGLSGGQQ 174 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-----HHHhhCCcccCCHHHH
Confidence 4567899999999999999999999996431 1 11 12344455554443322 1345566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1360 Qrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||++||||++++|+|+||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|.+.++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999987678999999999999865 899999999999999887765
Q ss_pred h
Q 000521 1439 F 1439 (1446)
Q Consensus 1439 ~ 1439 (1446)
+
T Consensus 255 ~ 255 (272)
T PRK14236 255 F 255 (272)
T ss_pred h
Confidence 3
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=349.75 Aligned_cols=209 Identities=25% Similarity=0.383 Sum_probs=183.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh----HhHhc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRG 1294 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~ 1294 (1446)
+.+.|+.++|+++ .++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+. ...|+
T Consensus 1 ~~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 1 VQVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred CeeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 3578999999755 569999999999999999999999999999999999999999999999999876542 34567
Q ss_pred ceEEEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhC--CCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~l--gLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
.++|+||+|.+|+.|+++|+......++++.+++++.+++.+.++.+ |+++.++....+||+|||||++||||++++|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 89999999999999999999876545566677888888888777665 7888888888899999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHH--HHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCE
Q 000521 1373 KVLCLDECTANVDAQTASILQN--AISSEC-KGMTVITIAHRISTVLNMDEILILDHGH 1428 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~--~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1428 (1446)
++|||||||++||.++.+.+.+ .++... .+.|+|++||+.+.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999887776 444332 3689999999999999999999999984
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=358.41 Aligned_cols=215 Identities=28% Similarity=0.402 Sum_probs=181.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCC--ChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1290 (1446)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999999753 345
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCC---C-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~---~-~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||++.+|+.|+++|+.+... . +. +++.++++.+++.+.+ ..........||+|||||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qrv 156 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-----KDDLKKSALKLSGGQQQRL 156 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999974321 1 11 2334455555443221 2234556678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||||++|++|++++.|.+...+
T Consensus 157 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 157 CIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 9999999999999999999999999999999999987667999999999999876 8999999999999999887654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=371.98 Aligned_cols=214 Identities=24% Similarity=0.396 Sum_probs=181.6
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..++++|++++|.. .++|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++...+.+ ++++
T Consensus 13 ~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 13 PLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred ceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 35999999999964 4699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
++|+|++.+|+. |+++|+.+.-. .++.++.+ .+.+.++.+|++.........||||||||++|||||+++|
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P 163 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKP 163 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999976 99999975321 22222211 1122333335555556666789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|+||||||+||..+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|.+++
T Consensus 164 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 164 KVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999987653 7899999999998764 9999999999999999988765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=361.59 Aligned_cols=212 Identities=27% Similarity=0.418 Sum_probs=181.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 3 ~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 3 LIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred eEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 37899999999633 35999999999999999999999999999999999999999999999999998878888899999
Q ss_pred EEeCCC--CCCCCcHHHhcCCCC---CCChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1298 VVPQSP--FLFEGSLRDNLDPFH---MNDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1298 ~VpQdp--~lF~gTIR~NLdp~~---~~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
|+||+| .+|+.|+++|+.... ..+.+ ++.++++.+ |+..........||+|||||++|||||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML---------GLEELRDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC---------CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 999998 477889999996422 12222 233344444 444444555668999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+.+|++|||||||++||..+.+.+.+.+++..+ ++|||++||+++.+. .||||++|++|++++.|.+..++
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 999999999999999999999999999987643 789999999999985 58999999999999999887664
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=359.75 Aligned_cols=215 Identities=25% Similarity=0.364 Sum_probs=180.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1290 (1446)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 5899999999964 369999999999999999999999999999999999987 3 58999999999864 4556
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCC----CChHH----HHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~----~~d~e----i~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||+|.+|++|+++|+.+... .++++ +.++++..++.+.+ .........+||+|||||+
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~l~~~~~~LS~Gq~qrv 164 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-----KDRLHTQALSLSGGQQQRL 164 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhhhhCCcccCCHHHHHHH
Confidence 78899999999999999999999964321 12222 23334443332211 2334556678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||+|||||++||.++...+.+.|++..+++|+|+|||+++.+.+ ||||++|++|++++.|++..++
T Consensus 165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999987668999999999999865 8999999999999999988764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=351.64 Aligned_cols=200 Identities=30% Similarity=0.402 Sum_probs=170.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~~ 1295 (1446)
++++|++++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.. .+|++
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 4699999999999999999999999999999999999999999999999999887643 46789
Q ss_pred eEEEeCCCCCCC-CcHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1296 i~~VpQdp~lF~-gTIR~NLdp~~---~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
++|+||+|.+|. .|+++|+.... ... +++++++++..+ ++........+||||||||++||||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrl~la~a 151 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVG---------LEHKADAFPEQLSGGEQQRVAIARA 151 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC---------ChhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999999986 59999986431 111 233444455444 4433344445799999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCE
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGH 1428 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1428 (1446)
|+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 152 IVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999998764 48999999999999986 89999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=357.71 Aligned_cols=216 Identities=27% Similarity=0.372 Sum_probs=182.2
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEEcCeeCCCC--Ch
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIINT--PV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~i--~~ 1289 (1446)
+.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 35899999999963 46999999999999999999999999999999999999987 69999999998653 45
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCCC----CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM----NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~----~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
..+|++++|+||+|.+|+.|+++|+.+... ... +.+.++++..++++.+ ....+..+.+||+|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~Gq~qr 155 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-----KDNLHKSGLALSGGQQQR 155 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 678899999999999999999999975321 111 2233344444443322 233556677899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++||||++++|++|||||||++||.++...+.+.|++..+++|||+|||+++.+.+ ||+|++|++|++++.|.+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999999999877567999999999999877 6999999999999998886543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=355.35 Aligned_cols=202 Identities=27% Similarity=0.364 Sum_probs=173.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 11 ~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 11 TPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred CcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 35999999999964 46999999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+|+||+|.+|+ .|+++|+.+... ..++++.++++.. |++........+||||||||++|||||+++|++
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~---------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l 154 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV---------GLADRANEWPAALSGGQKQRVALARALIHRPGL 154 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc---------CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999987 599999975321 1233344444444 555555566678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
|||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.+.
T Consensus 155 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 155 LLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 99999999999999999999998753 37899999999998865 89999999999998765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=348.07 Aligned_cols=200 Identities=24% Similarity=0.369 Sum_probs=170.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|++. . .|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|++++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 5799999999642 2 39999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCCC-------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHMN-------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~~-------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||+|.+|++ |+++|+.+.... +++++.++++.++ ++.........||+|||||++||||+++
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVG---------LAGLEKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcC---------CHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 999999743211 1233444555544 4444444556899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999998764 37899999999999876 8999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=352.38 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=174.4
Q ss_pred cEEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh---H
Q 000521 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---L 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---l 1292 (1446)
.|+++|++++|++.. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 599999999997532 25999999999999999999999999999999999999999999999999998877654 2
Q ss_pred -hcceEEEeCCCCCCCC-cHHHhcCCC---CCCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1293 -RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1293 -R~~i~~VpQdp~lF~g-TIR~NLdp~---~~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
+++++++||+|.+|++ |+++|+.+. ...+. +++.++++.. |++.........||+|||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~Ge~qrl~ 156 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL---------GLGKRLDHLPAQLSGGEQQRVA 156 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc---------CCHhHhhCChhhCCHHHHHHHH
Confidence 3679999999999885 999998642 11111 2233344444 5544444555689999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEEEE
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVCI 1432 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~ 1432 (1446)
|||||+++|++|||||||++||.++.+.+.+.|++.. .++|||+|+|+++.+..||+|++|++|+++|.
T Consensus 157 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 157 LARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999998763 27899999999999988999999999999874
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=374.23 Aligned_cols=210 Identities=26% Similarity=0.382 Sum_probs=183.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+. .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+++..++|++++
T Consensus 3 ~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 3 MIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred eEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4899999999964 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCC-CCCcHHHhcCCCCC-----C------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1298 VVPQSPFL-FEGSLRDNLDPFHM-----N------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1298 ~VpQdp~l-F~gTIR~NLdp~~~-----~------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
++||++.+ |+.|+++|+..+.. . +++++.++++.+++.+. ......+||||||||++||
T Consensus 81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~---------~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF---------ADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh---------hcCChhhCCHHHHHHHHHH
Confidence 99999987 57799999965321 1 12345556666655433 3344557999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||+++|+||+|||||++||..+...+.+.|++.. +++|||+++|+++.+. .||||++|++|++++.|+|..+
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999998764 4789999999999995 5999999999999999999864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=359.89 Aligned_cols=217 Identities=25% Similarity=0.358 Sum_probs=182.2
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CC
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TP 1288 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~ 1288 (1446)
.-.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 22 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 22 KVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred ceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 336999999999964 369999999999999999999999999999999999987 699999999999853 45
Q ss_pred hHhHhcceEEEeCCCCCCCCcHHHhcCCC---CCCChH-----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPF---HMNDDL-----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lF~gTIR~NLdp~---~~~~d~-----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
...+|++++|+||+|.+|..|+++|+.+. ...+++ .+.++++..++.+ +++......+..|||||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-----ELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-----hHHHHHhcCcccCCHHHHH
Confidence 56788999999999999999999999742 112221 1233333333221 2334456667789999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++|||||+++|+||||||||++||..+.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.|.+..++
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887678999999999999875 8999999999999998887553
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=362.91 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=180.8
Q ss_pred cEEEEEEEEEecCCC---CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC----ChH
Q 000521 1218 LIEFQNVTMRYKPSL---PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~---~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~ 1290 (1446)
.|+++|++++|++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997422 4699999999999999999999999999999999999999999999999999753 345
Q ss_pred hHhcceEEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHHHH
Q 000521 1291 DLRGRFAVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~L 1364 (1446)
..|++++|+||+| .+|+.|+++|+.+.. ..+.++..+ ...+.++.+|++. .......+||+|||||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~l 156 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKVGLSEDLISKSPFELSGGQMRRVAI 156 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCChhHhhCCcccCCHHHHHHHHH
Confidence 6788999999998 577889999996321 122222211 1223444457763 4456667899999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||++++|++|||||||++||.++.+.+.+.|++.. ++.|||++||+++.+. -||+|++|++|++++.|++..++
T Consensus 157 aral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 157 AGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999998764 4789999999999986 59999999999999999887653
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=339.15 Aligned_cols=195 Identities=28% Similarity=0.369 Sum_probs=160.5
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++-.|...... ..+|+++||+|++||+++|+|||||||||||++|.|...|++|.|.++|
T Consensus 2 i~~~~v~k~y~~~~~~--~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEK--VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcc--eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 3567777777654321 4579999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEcCCCCCCCc-cHHHHHhcC----CCCC---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000521 669 ----SIAYVPQVPWILSG-TIRDNILFG----KNYD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1446)
Q Consensus 669 ----~i~yv~Q~p~l~~~-ti~~nI~~g----~~~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 736 (1446)
+||||+|+..|.+. |++|||.+. .... .++.++.++..+|.+... .....+|||||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQ 149 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQ 149 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHH
Confidence 49999999987765 999999853 2221 345556666666654432 2345689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 737 Ri~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
||||||||+.+|++++.||||.+||.++++.|++.+......+|+|+|+|||+......|||++.|+||++.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999863322134578999999999999999999999999954
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=354.05 Aligned_cols=213 Identities=24% Similarity=0.357 Sum_probs=180.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC------CCChHh
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII------NTPVRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~------~i~~~~ 1291 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 3789999999964 36999999999999999999999999999999999999999999999999974 123456
Q ss_pred HhcceEEEeCCCCCCCC-cHHHhcCCC--C--CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000521 1292 LRGRFAVVPQSPFLFEG-SLRDNLDPF--H--MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~g-TIR~NLdp~--~--~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1446)
+|++++|+||+|.+|++ |+++|+..+ . ....++.. ....+.++.+|++........+||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 154 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIAR 154 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 78899999999999976 999999631 1 11222211 12344455557776677777789999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|++++|+++||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.+ ||+|++|++|++++.|.+..
T Consensus 155 al~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 155 ALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999998764 47999999999999865 89999999999999988764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=318.91 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=170.7
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------eE
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~i 670 (1446)
+.++++.|+|... + =..+++|++||+++|+|||||||||||++|.|+..|.+|+|.++| .+
T Consensus 2 l~L~~V~~~y~~~---~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGHL---P-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceEEeeCcc---e-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 3456788888532 2 246799999999999999999999999999999999999999987 49
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC-------CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000521 671 AYVPQVPWILSG-TIRDNILFGKN-------YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 671 ~yv~Q~p~l~~~-ti~~nI~~g~~-------~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lAR 742 (1446)
+.++|+..||.- ||++||-+|.. .+.++.+.+....+|....+.+|. +|||||||||||||
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALAR 142 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALAR 142 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHH
Confidence 999999999976 99999999853 245677888888899888888885 79999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHhc
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 743 aly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
++.++.+|++||||||||||.-+......+..-...++.|++||||+++.+.. +|+++++++|+|.++|+.+++...
T Consensus 143 clvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 143 CLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999988877664221113456799999999998765 999999999999999999887643
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=362.09 Aligned_cols=215 Identities=26% Similarity=0.314 Sum_probs=179.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHhc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLRG 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR~ 1294 (1446)
.|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.. .+|+
T Consensus 7 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 5899999999953 4699999999999999999999999999999999999999999999999999876643 4578
Q ss_pred ceEEEeCCCCCCCC-cHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1295 RFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~g-TIR~NLdp~----~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
+++|+||++.+|++ |+++|+.+. ...+.++..+ ...+.++.+|++........+||||||||++||||++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~ 159 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA 159 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 89999999999986 999998642 1112111111 1222333446655555556689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|++|||||||++||.++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 160 LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999998764 27899999999999876 8999999999999998876543
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=360.37 Aligned_cols=220 Identities=22% Similarity=0.321 Sum_probs=187.7
Q ss_pred CCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCC--
Q 000521 1213 WPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-- 1285 (1446)
Q Consensus 1213 wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~-- 1285 (1446)
-|.++.|+++|++++|+. +++|+|+||+|++||++||+|++|||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 11 ~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~ 88 (265)
T PRK14252 11 SPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNIL 88 (265)
T ss_pred cCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccc
Confidence 456788999999999964 3699999999999999999999999999999999999875 7999999998874
Q ss_pred --CCChHhHhcceEEEeCCCCCCCCcHHHhcCCCC---C-----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCC
Q 000521 1286 --NTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1355 (1446)
Q Consensus 1286 --~i~~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~-----~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LS 1355 (1446)
......+|++++|+||+|.+|.+|+++|+.... . ..++++.++++.+++.+ ++....+.....||
T Consensus 89 ~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~l~~~~~~~~~~LS 163 (265)
T PRK14252 89 SPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-----EVKDRLGDLAFNLS 163 (265)
T ss_pred ccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-----hhhHHHhCCcccCC
Confidence 334567889999999999999999999996431 1 11345566666665543 22344556667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1356 gGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
+|||||++||||++++|++++|||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999887667899999999999965 89999999999999999
Q ss_pred cchhh
Q 000521 1435 ICRYF 1439 (1446)
Q Consensus 1435 ~~~~~ 1439 (1446)
+.+++
T Consensus 244 ~~~~~ 248 (265)
T PRK14252 244 TDTIF 248 (265)
T ss_pred HHHHH
Confidence 87765
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=359.16 Aligned_cols=214 Identities=26% Similarity=0.396 Sum_probs=178.6
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCCCC--hHh
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINTP--VRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i~--~~~ 1291 (1446)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999963 469999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcceEEEeCCCCCCCCcHHHhcCCCC---CC--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MN--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~--~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
+|++++|+||++.+|++|+++|+.+.. .. . ++++.++++..++.+. +.+.++..+.+||+|||||+
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-----LGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-----hhhHhhcChhhCCHHHHHHH
Confidence 788999999999999999999986431 11 1 1223344444433221 11244556678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999887678999999999999875 8999999999999999887654
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=358.19 Aligned_cols=210 Identities=24% Similarity=0.369 Sum_probs=181.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCC--------CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHM--------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~--------~~---d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1446)
+||++.++.+ |+++|+++... .. ++++.++++.+ |++.........||||||||++|||
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT---------RINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc---------CCHHHHcCCcccCCHHHHHHHHHHH
Confidence 9999998877 99999975311 01 12233333333 5554455566789999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++++|++|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 9999999999999999999999999999998764 47899999999999865 8999999999999998877653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=348.19 Aligned_cols=204 Identities=26% Similarity=0.416 Sum_probs=172.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC--CChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1296 (1446)
++++||+++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 4556788999
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+|+||+|.+|+ .|+++|+.... ..+.++..+ ...+.++.+|++........+||+|||||++||||++++
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 153 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMN 153 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcC
Confidence 99999999887 59999996532 122222111 123344445676666666778999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEE
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~v 1429 (1446)
|++|||||||++||+++.+.+.+.|++.. .++|+|++||+++.+.+ ||+|++|++|++
T Consensus 154 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 154 PKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999998764 47899999999999975 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-38 Score=361.13 Aligned_cols=213 Identities=26% Similarity=0.390 Sum_probs=181.4
Q ss_pred cEEEEEEEEEecCC----CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC-hHhH
Q 000521 1218 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP-VRDL 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~-~~~l 1292 (1446)
.++++|++++|+.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 58999999999643 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEeCCCC--CCCCcHHHhcCCCCC---CCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1293 RGRFAVVPQSPF--LFEGSLRDNLDPFHM---NDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1293 R~~i~~VpQdp~--lF~gTIR~NLdp~~~---~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
|++++|+||+|. +|..|+++|+.+... .+. +++.++++.+ |++.........||+|||||++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~---------gL~~~~~~~~~~LS~G~~qrv~ 154 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV---------GMYEYRRHAPHLLSGGQKQRVA 154 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC---------CCHhHhhCCcccCCHHHHHHHH
Confidence 899999999984 676789999965321 122 2334444444 5544455556689999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||++++|++|||||||++||..+.+.+.+.|++.. .++|||+|||+++.+..||+|++|++|++++.|.+..++
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999998764 389999999999999889999999999999999887654
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=359.68 Aligned_cols=216 Identities=25% Similarity=0.360 Sum_probs=182.8
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1289 (1446)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 46999999999964 3699999999999999999999999999999999999985 48999999999864 445
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
..+|++++|+||+|.+|+.|+++|+.+.. ... ++.+.++++.+++.+.+ ....+.....||+|||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LS~G~~qr 158 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-----KDKLNKSALGLSGGQQQR 158 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67888999999999999999999996421 112 12344556666554322 223345566899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe-----CCEEEEEecc
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD-----HGHLVCISFI 1435 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~-----~G~vvE~~~~ 1435 (1446)
++||||++++|++|+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||++++|+ +|++++.|.+
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 99999999999999999999999999999999999987667999999999999876 89999998 5999999998
Q ss_pred chhh
Q 000521 1436 CRYF 1439 (1446)
Q Consensus 1436 ~~~~ 1439 (1446)
..++
T Consensus 239 ~~~~ 242 (259)
T PRK14260 239 TQIF 242 (259)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=365.22 Aligned_cols=217 Identities=25% Similarity=0.377 Sum_probs=178.2
Q ss_pred cEEEEEEEEEecCC--------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh
Q 000521 1218 LIEFQNVTMRYKPS--------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1289 (1446)
.|+++|++++|+.. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 48999999999631 2469999999999999999999999999999999999999999999999999988875
Q ss_pred H---hHhcceEEEeCCCC--CCCC-cHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhH
Q 000521 1290 R---DLRGRFAVVPQSPF--LFEG-SLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1358 (1446)
Q Consensus 1290 ~---~lR~~i~~VpQdp~--lF~g-TIR~NLdp----~~~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQ 1358 (1446)
. .+|+++++|||||. +++. |+.+|+.. .......+. +....+.++.+|++. ........|||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 4 56889999999994 5553 89888742 111122111 111223344445542 3455566899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEecc
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~ 1435 (1446)
|||++|||||+.+|++||+||||++||..+.+.|.+.|++.. .+.|+|+|||+++.+.. ||+|+||++|+|+|.|.+
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999998764 38999999999999975 999999999999999987
Q ss_pred chhh
Q 000521 1436 CRYF 1439 (1446)
Q Consensus 1436 ~~~~ 1439 (1446)
..++
T Consensus 240 ~~~~ 243 (327)
T PRK11308 240 EQIF 243 (327)
T ss_pred HHHh
Confidence 7665
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=366.18 Aligned_cols=214 Identities=27% Similarity=0.343 Sum_probs=179.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ....|++++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 5899999999964 3699999999999999999999999999999999999999999999999998764 356789999
Q ss_pred EEeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
|+||++.+++ .|+++|+..+. ..++.+..+.+ .+.++.+|++.........||||||||++|||||+++|+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 155 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQ 155 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999886 59999996321 12222222211 122333355544455556799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|+|||||++||+++.+.+.+.|++.. +++|||++||+++.+.. ||+|++|++|++++.|++..+.
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999998763 47899999999999875 9999999999999999987654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-38 Score=365.33 Aligned_cols=213 Identities=26% Similarity=0.374 Sum_probs=184.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|++ ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +...+|++++|
T Consensus 3 l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 44678899999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||+|.+|++ |++||+.++.. ...++..+ ...+.++.+|++........+||+|||||++||||++++|++
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 154 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999987 99999964321 12222111 123344445777666667778999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|+|||||++||+++.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++..+.
T Consensus 155 liLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 155 LILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999987778999999999999876 9999999999999999998763
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=359.66 Aligned_cols=210 Identities=24% Similarity=0.340 Sum_probs=180.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 11 ~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCC--------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~--------~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
|+||++.++.+ |+++|+..... . .++++.++++.+++ +........+||||||||++||
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL---------KPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC---------HHHhcCCcccCCHHHHHHHHHH
Confidence 99999877665 99999974311 0 12234455555544 3333444457999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||++.+|+||||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|.+..+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 99999999999999999999999999999998763 3799999999999986 4899999999999999887654
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=360.63 Aligned_cols=209 Identities=25% Similarity=0.336 Sum_probs=175.6
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH----hcc
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGR 1295 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~ 1295 (1446)
.++|++.+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 46688888854 368999999999999999999999999999999999999999999999999988776543 468
Q ss_pred eEEEeCCCCCCC-CcHHHhcCCCC---CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFE-GSLRDNLDPFH---MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1296 i~~VpQdp~lF~-gTIR~NLdp~~---~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
++|+||++.+|+ .|+++|+.... .... +++.++++ .+|++........+||+|||||++||||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~LS~Gq~qrv~lAra 174 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALE---------LVGLEGWEHKYPDELSGGMQQRVGLARA 174 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------HcCCHhHhhCCcccCCHHHHHHHHHHHH
Confidence 999999999885 59999996421 1111 22333333 3455544555566899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++++|+||||||||++||..+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++..++
T Consensus 175 l~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 175 LAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999998764 37999999999998865 8999999999999999887654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=355.61 Aligned_cols=212 Identities=37% Similarity=0.660 Sum_probs=191.2
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeCeEEEEcCCC
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~~i~yv~Q~p 677 (1446)
.+..++++|+++.+ +++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.|+|++|++
T Consensus 36 ~~~~l~i~nls~~~--------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~ 107 (282)
T cd03291 36 DDNNLFFSNLCLVG--------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFS 107 (282)
T ss_pred CCCeEEEEEEEEec--------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcc
Confidence 45678999999852 2359999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCc
Q 000521 678 WILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVL 757 (1446)
Q Consensus 678 ~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~ 757 (1446)
++++.|++||+.++...++.++.+.++++++...+..+|.+.++.+++++.+||||||||++||||++.+|+++||||||
T Consensus 108 ~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 108 WIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred cccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999999999987655556677888889998889999999989999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 758 SAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 758 s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
++||+.+.+.+.+.++.. +.+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 188 ~gLD~~~~~~l~~~ll~~-~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHH-hhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999988887754322 345789999999999998899999999999999999988754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=357.89 Aligned_cols=215 Identities=26% Similarity=0.401 Sum_probs=182.0
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCC--ChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1290 (1446)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+.++ ++|+|.+||.++... +..
T Consensus 6 ~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999999876 456
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCCC----C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHMN----D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~~----~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
..|++++|+||+|.+|++|+++|+.+.... . ++++.++++.+++.+. +.+..+..+.+||+|||||+
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qrv 158 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-----VKDRLHDSALSLSGGQQQRL 158 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-----hHHHhhcChhhCCHHHHHHH
Confidence 778899999999999999999999753211 1 1223444444443221 23345666778999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++.+|+++||||||++||.++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 159 ~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 9999999999999999999999999999999999987667999999999999965 8999999999999999887654
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=358.04 Aligned_cols=215 Identities=25% Similarity=0.396 Sum_probs=180.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCC--ChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINT--PVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i--~~~ 1290 (1446)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 4899999999963 4699999999999999999999999999999999999984 899999999998753 345
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++++||+|.+|+.|+++|+.... ...+ +++.++++..++.+.+ +...+....+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~Gq~qr~ 155 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-----KSELNKPGTRLSGGQQQRL 155 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-----HHHHhCChhhcCHHHHHHH
Confidence 6788999999999999999999997421 1111 2234444444443221 2334566678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+..+.
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999887678999999999998765 8999999999999999886554
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=350.20 Aligned_cols=197 Identities=32% Similarity=0.462 Sum_probs=165.4
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. .+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 46899999964 36999999999999999999999999999999999999999999999998874 468899999
Q ss_pred eCCCCC---CCCcHHHhcCCCCCC-----------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1300 PQSPFL---FEGSLRDNLDPFHMN-----------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1300 pQdp~l---F~gTIR~NLdp~~~~-----------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
||+|.+ |+.|++||+...... .++++.++++.. |++........+||||||||++||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV---------GLSELADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc---------CCHHHHhCCcccCCHHHHHHHHHH
Confidence 999976 568999998643211 112333444444 454444455668999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
|||+++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.+ ||+|++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999998764 57899999999999876 8999999987 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=358.06 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=182.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1290 (1446)
.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999964 369999999999999999999999999999999999986 379999999999853 4566
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCC---C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~---~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1446)
.+|++++++||+|.+|+.|+++|+.+... . .++++.++++.+++.+.+. ...+....+||||||||++|
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~l 162 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCI 162 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHH
Confidence 78899999999999998999999975321 1 1233445566666654332 23445566899999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe---------CCEEEEEec
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVCISF 1434 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~---------~G~vvE~~~ 1434 (1446)
|||++++|+||||||||++||.++.+.+.+.|++..+++|||+|||+++.+.. ||||++|+ +|++++.|.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 163 ARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCC
Confidence 99999999999999999999999999999999887767899999999998865 79999998 899999999
Q ss_pred cchhh
Q 000521 1435 ICRYF 1439 (1446)
Q Consensus 1435 ~~~~~ 1439 (1446)
+..++
T Consensus 243 ~~~~~ 247 (264)
T PRK14243 243 TEKIF 247 (264)
T ss_pred HHHHH
Confidence 87764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=352.48 Aligned_cols=212 Identities=28% Similarity=0.373 Sum_probs=177.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|++ +++|+|+||+|.+||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+.++|
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 578999999974 369999999999999999999999999999999999999999999999999987653 4788999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||+|.+|++ |+++|+..... .+..+.. ..+.+.++.+|+.........+||+||+||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999986 99999964321 1111110 1123344444554444555568999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|+++|.|.+.++.
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999987543 7999999999999866 8999999999999999877653
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=330.86 Aligned_cols=204 Identities=31% Similarity=0.413 Sum_probs=174.0
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------- 668 (1446)
+..|+++++++++.. +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+.|
T Consensus 6 ~~~I~vr~v~~~fG~------~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGD------RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCC------EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHH
Confidence 467999999999853 3469999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEcCCCCCCCc-cHHHHHhcC----CCCChhhHHH----HHHHhcchHH-HhhccCCCcccccCCCCccch
Q 000521 669 ------SIAYVPQVPWILSG-TIRDNILFG----KNYDPQSYSE----TLKACTLDVD-ISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 ------~i~yv~Q~p~l~~~-ti~~nI~~g----~~~~~~~~~~----v~~~~~l~~d-i~~~~~gd~t~ig~~g~~LSG 732 (1446)
++|+++|+--||+. ||+||+.|. ...+++.+++ -+++++|..+ .+.+| ..|||
T Consensus 80 ~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSG 148 (263)
T COG1127 80 LYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSG 148 (263)
T ss_pred HHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcc
Confidence 59999999999977 999999985 2345544443 4678888877 55555 48999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCc-ccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP-HMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~-~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
|.+.|+|||||+..||+|+++|||||+|||.++..+-+ ++... ..-+-|+|+|||+++.+.. ||+|+++.||+|...
T Consensus 149 GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~-LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~ 227 (263)
T COG1127 149 GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDE-LIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227 (263)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHH-HHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEe
Confidence 99999999999999999999999999999998775544 34321 1236799999999998765 899999999999999
Q ss_pred cChhHHHhcc
Q 000521 811 GSSADLAVSL 820 (1446)
Q Consensus 811 g~~~~l~~~~ 820 (1446)
|+++|+.+.+
T Consensus 228 Gt~~el~~sd 237 (263)
T COG1127 228 GTPEELLASD 237 (263)
T ss_pred CCHHHHHhCC
Confidence 9999997653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=361.77 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=185.0
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..|+++||+.+|+ ...+++|+||+|++||.+.+.|||||||||++++|.||..|++|+|.+||.|+..+|++ ++.|
T Consensus 4 ~~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 4 PALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred ceEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 4699999999997 35799999999999999999999999999999999999999999999999999999986 5789
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC----CChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM----NDDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~----~~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
++|+|+..||+- ||++|+.++-. ..++ ++.++|+.++|.++ -......|||||+||++||||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~---------~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGF---------ADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhh---------hhhChhhhChHHHHHHHHHHH
Confidence 999999999986 99999987633 2333 45666666666543 344566899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhhh
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
|..+|++|+||||-|+||.+-...+|.-+++.. .+.|.|.|||+-+... -+|||+||++|+|...|+|..++.
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999999988876653 3899999999988755 589999999999999999988764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=358.84 Aligned_cols=215 Identities=25% Similarity=0.381 Sum_probs=178.3
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCC--CChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN--TPVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~--i~~~~lR~~i 1296 (1446)
++++||+++|+. ..++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...+|++|
T Consensus 2 l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 789999999963 2469999999999999999999999999999999999999999999999999853 3345678999
Q ss_pred EEEeCCC--CCCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSP--FLFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp--~lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+|+||+| .+|+.|+++|+.... ..+.++..+. ..+.++.+|++.........||+|||||++||||++++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~ 155 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMK 155 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998 478899999996421 1222221111 12233333554444445568999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++|||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++..++
T Consensus 156 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 156 PEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999998764 47899999999999875 9999999999999999988764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=357.43 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=179.6
Q ss_pred cEEEEEEEEEecCC-------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH
Q 000521 1218 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1290 (1446)
.|+++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999632 35799999999999999999999999999999999999999999999999999887654
Q ss_pred h---HhcceEEEeCCCC--CCC-CcHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHH
Q 000521 1291 D---LRGRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQR 1359 (1446)
Q Consensus 1291 ~---lR~~i~~VpQdp~--lF~-gTIR~NLdp~----~~~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQr 1359 (1446)
. +|++++|+||+|. +++ .|+++|+... .....++. ...+.+.++.+|++ ...+.....||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~ 156 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMVGLRSEDADKLPRQLSGGQL 156 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHcCCChhhhhCChhhCCHHHH
Confidence 3 6788999999983 443 6999998521 11111111 11123344445665 345566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccc
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1360 Qrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~ 1436 (1446)
||++||||++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.+.
T Consensus 157 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (265)
T TIGR02769 157 QRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVA 236 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHH
Confidence 999999999999999999999999999999999999987643 7899999999999975 8999999999999999987
Q ss_pred hhh
Q 000521 1437 RYF 1439 (1446)
Q Consensus 1437 ~~~ 1439 (1446)
.++
T Consensus 237 ~~~ 239 (265)
T TIGR02769 237 QLL 239 (265)
T ss_pred HHc
Confidence 665
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=368.40 Aligned_cols=216 Identities=19% Similarity=0.304 Sum_probs=175.8
Q ss_pred cEEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEEcCeeCCCCChHh
Q 000521 1218 LIEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1291 (1446)
.++++|++++|+... ..+|+||||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.|+.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996532 369999999999999999999999999999999999997 48999999999999998776
Q ss_pred Hhc----ceEEEeCCCC--CCCC-cHHHhc----CCCCCCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCCh
Q 000521 1292 LRG----RFAVVPQSPF--LFEG-SLRDNL----DPFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSV 1356 (1446)
Q Consensus 1292 lR~----~i~~VpQdp~--lF~g-TIR~NL----dp~~~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSg 1356 (1446)
+|+ +|++|||+|. +.+. |+.+|+ ....... .+++.++|+.+++.+. +...+....+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~------~~~l~~~p~~LSg 156 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP------ASRLDVYPHQLSG 156 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh------HHHHhCCchhCCH
Confidence 553 6999999995 4432 565554 2221111 1233444444443211 1234566778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEe
Q 000521 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1357 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~ 1433 (1446)
|||||++|||||+.+|++||+||||++||..+...+.+.|++.. .+.|+|+|||+++.+. .||||+||++|+|+|.|
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998764 3789999999999985 59999999999999999
Q ss_pred ccchhh
Q 000521 1434 FICRYF 1439 (1446)
Q Consensus 1434 ~~~~~~ 1439 (1446)
.+..++
T Consensus 237 ~~~~~~ 242 (326)
T PRK11022 237 KAHDIF 242 (326)
T ss_pred CHHHHh
Confidence 887765
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=360.07 Aligned_cols=215 Identities=26% Similarity=0.388 Sum_probs=180.3
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~ 1289 (1446)
..|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 38 ~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 46899999999964 369999999999999999999999999999999999997 689999999999865 345
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCC---CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
..+|++++|+||++.+|++|+++|+.... .. .+++++++++..++.+.+ ....+....+||||||||++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-----~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-----KDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-----HHHHhCCcccCCHHHHHHHH
Confidence 67889999999999999999999996421 11 123344455554432211 12345566789999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEE-EEeCCEEEEEeccchh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEIL-ILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIl-vl~~G~vvE~~~~~~~ 1438 (1446)
|||||+++|+||||||||++||.++.+.+.+.|++..+++|+|+|+|+++.+.. |||++ +|++|+|++.|.+..+
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999988767899999999999876 89975 5799999999887654
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=358.95 Aligned_cols=214 Identities=24% Similarity=0.326 Sum_probs=176.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC--CCChHhHhcce
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII--NTPVRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~--~i~~~~lR~~i 1296 (1446)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|+++
T Consensus 2 l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 789999999963 46999999999999999999999999999999999999999999999999985 34456778899
Q ss_pred EEEeCCCC--CCCCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1297 AVVPQSPF--LFEGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1297 ~~VpQdp~--lF~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
+|+||+|. ++..|+.+|+.... ..++++..+. +.+.++.+|++........+||||||||++|||||+.+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~ 154 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQ 154 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcC
Confidence 99999985 57789999986421 1122222111 12223333444434445568999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|+||||||||++||.++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 155 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 155 ARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999998764 47899999999999865 9999999999999999887553
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=355.31 Aligned_cols=215 Identities=27% Similarity=0.394 Sum_probs=181.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCCC-hHh
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTP-VRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~-~~~ 1291 (1446)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ...
T Consensus 21 ~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 5899999999964 4699999999999999999999999999999999999986 6999999999998663 456
Q ss_pred HhcceEEEeCCCCCCCCcHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHHHH
Q 000521 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLd----t~v~e~G~~LSgGQrQrl~ 1363 (1446)
+|++++|+||+|.+|+.|+++|+.... ..+++++.+.. .+.++.+|++ +.+.....+||+|||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 789999999999999999999997431 12333332211 1223333443 3455667789999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||++++|++|||||||++||..+.+.+.+.|++..+++|||+|||+++.+.+ ||||++|++|++++.|.+.+++
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999887667899999999999875 8999999999999998887654
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-38 Score=358.23 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=182.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
-.|+++||+++|+. ..+|+|+||++++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 6 ~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 6 ARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred cEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 46999999999964 3699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCC-C-------CC---hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFH-M-------ND---DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~-~-------~~---d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1446)
+|+||++.+|. .|+++|+.+.. . .. ++++.++++.. |++.........||+|||||++|
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~Gq~qrv~l 154 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT---------GITHLADQSVDTLSGGQRQRAWI 154 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc---------CCHHHhcCCcccCChHHHHHHHH
Confidence 99999998875 59999997531 1 11 12233344443 55544556667899999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||++++|++|||||||++||.++.+.+.+.|++.. .++|+|+++|+++.+.+ ||+|++|++|++++.|.+..++
T Consensus 155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999998764 37899999999998865 8999999999999999887653
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=366.80 Aligned_cols=214 Identities=27% Similarity=0.371 Sum_probs=180.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+. ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+ ...|++++
T Consensus 41 ~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 5999999999964 36999999999999999999999999999999999999999999999999997654 56789999
Q ss_pred EEeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
|+||++.++. .|+++|+..+.. .+..+..+. ..+.++.+|++........+||+|||||++|||||+.+|+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~ 192 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ 192 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999875 599999975321 122222211 1223333355544455556799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|||||||++||+.+.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|++..+.
T Consensus 193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 193 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999998764 48999999999999975 9999999999999999988764
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=355.61 Aligned_cols=215 Identities=23% Similarity=0.394 Sum_probs=182.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~--i~~~ 1290 (1446)
.++++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+.+ |++|+|.+||.+++. .+..
T Consensus 3 ~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 3 RIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 3789999999964 369999999999999999999999999999999999875 389999999999875 3466
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC---CC-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~-~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||+|.+|++|+++|+.... .. ++ +++.++++.+++.+.+. ...+..+.+||+|||||+
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~Gq~qrv 155 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-----DKLDKSALGLSGGQQQRL 155 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-----HHHhCCcccCCHHHHHHH
Confidence 7899999999999999999999997431 11 11 23445566666654432 223455678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||+|||||++||..+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 156 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 156 CIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999987778999999999998876 7999999999999999887653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=368.94 Aligned_cols=214 Identities=28% Similarity=0.396 Sum_probs=181.5
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..++++|++++|+. ..+|+|+||+|++||.++|+|+||||||||+++|.|+.+|++|+|.+||.++.+.+. .|+++
T Consensus 18 ~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 18 PLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred ceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 35999999999964 369999999999999999999999999999999999999999999999999987764 47789
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+|++|++.+|+. |++||+.+.. ..+..++.+ .+.+.++.+|++........+||||||||++|||||+++|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P 168 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRP 168 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999986 9999997542 122222221 1223344446665556666789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|+||||||+||..+.+.+.+.|++.. .+.|+|+|||+++.+.. ||||++|++|++++.|+|..++
T Consensus 169 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 169 KLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999988776653 37899999999998754 9999999999999999998765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=355.40 Aligned_cols=218 Identities=23% Similarity=0.328 Sum_probs=183.3
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1296 (1446)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |..+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5899999999963 469999999999999999999999999999999999999999999999999988876554 4569
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC-----------CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM-----------ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~-----------~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
+|+||+|.+|++ |+++|+.+... .. +.+..+.. ....+.++.+|++........+||+||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEAL--DRAATWLERVGLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHH--HHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence 999999999986 99999975311 00 00000111 12234455557777777778899999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|++||||++++|++|||||||++||.++.+.+.+.|++..+ ++|||++||+++.+.+ ||+|++|++|++++.|++..
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999987642 7899999999999866 89999999999999998876
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
++
T Consensus 241 ~~ 242 (255)
T PRK11300 241 IR 242 (255)
T ss_pred Hh
Confidence 53
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=354.77 Aligned_cols=214 Identities=24% Similarity=0.341 Sum_probs=181.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCC-CCChHh
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNII-NTPVRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~-~i~~~~ 1291 (1446)
.++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 4899999999963 4699999999999999999999999999999999999986 5999999999986 456677
Q ss_pred HhcceEEEeCCCCCCCCcHHHhcCCCC---CCC-h----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1292 LRGRFAVVPQSPFLFEGSLRDNLDPFH---MND-D----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~~-d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
+|+.++|+||+|.+|++|+++|+.... ... + +++.++++.+++.+. +..........||+|||||++
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~LS~G~~qrv~ 155 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDE-----VKDRLKSHAFGLSGGQQQRLC 155 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchh-----hhHHhhcCcccCCHHHHHHHH
Confidence 899999999999999999999997431 111 1 123334444444322 123445566789999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||||++.+|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+.++
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999987667999999999999886 899999999999999887654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=361.65 Aligned_cols=204 Identities=27% Similarity=0.393 Sum_probs=175.5
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|++-+|.. ..+++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.++|
T Consensus 4 ~~l~i~~v~k~yg~------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVSKSFGD------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeeeeecCC------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 46899999999862 2359999999999999999999999999999999999999999999987
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCC----C-h---hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKNY----D-P---QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~~----~-~---~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
+|++|+|+.-||+. ||+|||.||... . + +++.++++..+|+.-- ..+...||||||||||
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVA 146 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVA 146 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHH
Confidence 59999999999976 999999999652 2 2 3677777777776533 4566799999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcch-hhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
|||||..+|+++|||||+||||.+..+++-..+.......|.|.|+|||+.+. +..+|+|.+|++|+|...|+++|+..
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999999999998888776433223347899999999876 67799999999999999999999975
Q ss_pred cc
Q 000521 819 SL 820 (1446)
Q Consensus 819 ~~ 820 (1446)
..
T Consensus 227 ~P 228 (352)
T COG3842 227 RP 228 (352)
T ss_pred Cc
Confidence 43
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=353.28 Aligned_cols=211 Identities=26% Similarity=0.355 Sum_probs=180.9
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 3789999999964 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEeCCCCC-CCCcHHHhcCCCCC-C--C----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1298 VVPQSPFL-FEGSLRDNLDPFHM-N--D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1298 ~VpQdp~l-F~gTIR~NLdp~~~-~--~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
|+||++.+ +..|+++|+..... . + ++++.++++.. |++.........||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV---------DLAHLAGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc---------CCHhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999987 56799999865321 1 1 12233344443 5554455556689999999999999999
Q ss_pred ------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1370 ------KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 ------r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++|++|+|||||++||+++.+.+.+.|++.. +++|||+|||+++.+. .||+|++|++|++++.|++.+++
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 5999999999999999999999999998764 4789999999999887 58999999999999999887654
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=362.52 Aligned_cols=217 Identities=24% Similarity=0.406 Sum_probs=182.5
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCCC--C
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1288 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1288 (1446)
+..|+++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++... +
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 446999999999964 469999999999999999999999999999999999986 6899999999998753 4
Q ss_pred hHhHhcceEEEeCCCCCCCCcHHHhcCCCCC---------------C-----ChHHHHHHHHHccHHHHHHhCCCchhhh
Q 000521 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---------------N-----DDLKIWSVLEKCHVKEEVEAVGLETFVK 1348 (1446)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~---------------~-----~d~ei~~aL~~~~L~~~i~~lgLdt~v~ 1348 (1446)
...+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+. ++...+
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----~~~~~~ 195 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-----VNDRLD 195 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-----hhHHhc
Confidence 5678899999999999999999999974210 0 12234444444443221 234456
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEE-EEEeC
Q 000521 1349 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEI-LILDH 1426 (1446)
Q Consensus 1349 e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrI-lvl~~ 1426 (1446)
....+||||||||++|||||+++|+||||||||++||..+.+.+.+.|++..++.|+|+|||+++.+.. ||+| ++|++
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~ 275 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG 275 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecC
Confidence 667789999999999999999999999999999999999999999999988777899999999999875 8997 57899
Q ss_pred CEEEEEeccchhh
Q 000521 1427 GHLVCISFICRYF 1439 (1446)
Q Consensus 1427 G~vvE~~~~~~~~ 1439 (1446)
|++++.|.+..++
T Consensus 276 G~i~~~g~~~~~~ 288 (305)
T PRK14264 276 GELVEYDDTDKIF 288 (305)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999876553
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=356.56 Aligned_cols=215 Identities=26% Similarity=0.413 Sum_probs=179.2
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1290 (1446)
.++++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999854 4456
Q ss_pred hHhcceEEEeCCCCCCC-CcHHHhcCCCC----CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFE-GSLRDNLDPFH----MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~-gTIR~NLdp~~----~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
.+|+.++++||++.+|+ .|+++|+.... ..+ ++++.++++.+++.+.+ +........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-----KDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-----hhHhhCCcccCCHHHHHH
Confidence 78899999999999997 49999986321 111 12333444444442211 234455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe------CCEEEEEec
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD------HGHLVCISF 1434 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~------~G~vvE~~~ 1434 (1446)
++||||++++|+++||||||++||..+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|+|++.|.
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCC
Confidence 99999999999999999999999999999999999887667899999999999864 89999997 899999998
Q ss_pred cchhh
Q 000521 1435 ICRYF 1439 (1446)
Q Consensus 1435 ~~~~~ 1439 (1446)
+..++
T Consensus 237 ~~~~~ 241 (258)
T PRK14241 237 TEKIF 241 (258)
T ss_pred HHHHH
Confidence 87653
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=363.79 Aligned_cols=217 Identities=25% Similarity=0.379 Sum_probs=177.2
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEEcCeeCCCCChHhH
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINTPVRDL 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~---~G~I~IDG~di~~i~~~~l 1292 (1446)
.++++|++++|+.. ...+++||||+|++||++||+|+||||||||+++|.|+++|. +|+|.+||.|+..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 58999999999632 246999999999999999999999999999999999999996 9999999999999987765
Q ss_pred h----cceEEEeCCC--CCCC-CcHHHhcC----CCCCCChHHHHHHHHHccHHHHHHhCCCc---hhhhcCCCCCChhH
Q 000521 1293 R----GRFAVVPQSP--FLFE-GSLRDNLD----PFHMNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQ 1358 (1446)
Q Consensus 1293 R----~~i~~VpQdp--~lF~-gTIR~NLd----p~~~~~d~ei~~aL~~~~L~~~i~~lgLd---t~v~e~G~~LSgGQ 1358 (1446)
| ++|+|||||| .+++ -|+.+|+. .+...+.++..+. ..+.++..|++ ..++.....|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEARKRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChHHHhcCCcccCCHHH
Confidence 4 4799999999 4555 37777662 2222222221111 11222223443 23456677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEecc
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~ 1435 (1446)
|||++|||||+.+|++||+|||||+||..+...|.+.|++..+ +.|+|+|||+++.+.. ||||+||++|+|+|.|.+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999987643 7899999999999874 899999999999999998
Q ss_pred chhh
Q 000521 1436 CRYF 1439 (1446)
Q Consensus 1436 ~~~~ 1439 (1446)
..++
T Consensus 247 ~~i~ 250 (330)
T PRK09473 247 RDVF 250 (330)
T ss_pred HHHH
Confidence 7765
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=357.04 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=182.7
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~ 1289 (1446)
-.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 19 ~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 19 SVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred ceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 36999999999964 3699999999999999999999999999999999999863 58999999999864 344
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCCC---C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFHM---N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~~---~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
..+|++++|+||++.+|++|+++|+..... . .++++.++++.+++.+.+ ..........||||||||++
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-----~~~~~~~~~~LSgGq~qrv~ 171 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-----KDKLKEKGTALSGGQQQRLC 171 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-----HHHhcCCcccCCHHHHHHHH
Confidence 567899999999999998999999965321 1 123344555555554322 22344556689999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe---------CCEEEEEe
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD---------HGHLVCIS 1433 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~---------~G~vvE~~ 1433 (1446)
|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+|+|+++.+.. ||+|++|+ +|++++.|
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g 251 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFS 251 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeC
Confidence 999999999999999999999999999999999987778999999999999865 89999997 89999999
Q ss_pred ccchhh
Q 000521 1434 FICRYF 1439 (1446)
Q Consensus 1434 ~~~~~~ 1439 (1446)
.+.+++
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 987664
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=341.79 Aligned_cols=201 Identities=29% Similarity=0.389 Sum_probs=168.6
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
|.+++.+..|+.- .+++|||++|+.||++++.|||||||||||++|.|+..|++|.|.++|
T Consensus 3 i~i~~~~~~~~~~------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 3 IRINNVKKRFGAF------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred eeehhhhhhcccc------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhh
Confidence 5566666666532 348999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhcCCCC---------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 -SIAYVPQVPWILS-GTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~-~ti~~nI~~g~~~---------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
+||||+|+.-+|. .||.|||.||.+. ...+..+.++.|.|+.--+. ....||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r-----------yP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR-----------YPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc-----------CchhcChHHHHH
Confidence 4999999999886 5999999999632 22466777888888653333 446899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEccCcchh-hhCCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l-~~ad~i~~l~~G~i~~~g~~~~ 815 (1446)
|||||||..+|++|||||||+|||++..+.+-+.+. .-..+ |-|+++||||.++. ..||+|++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr-~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHH-HHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHH
Confidence 999999999999999999999999999887766532 21222 67999999999885 5599999999999999999999
Q ss_pred HHhcc
Q 000521 816 LAVSL 820 (1446)
Q Consensus 816 l~~~~ 820 (1446)
+....
T Consensus 225 v~~~P 229 (345)
T COG1118 225 VYDHP 229 (345)
T ss_pred HhcCC
Confidence 96543
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=354.24 Aligned_cols=210 Identities=22% Similarity=0.304 Sum_probs=180.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 789999999964 469999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EeCCCC-CCCCcHHHhcCCCCC--------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000521 1299 VPQSPF-LFEGSLRDNLDPFHM--------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1299 VpQdp~-lF~gTIR~NLdp~~~--------~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1446)
+||+|. .+..|+++|+..+.. . .++++.++++.+ |++.........||+|||||++|||
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrl~la~ 150 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART---------ELSHLADRDMSTLSGGERQRVHVAR 150 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc---------CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 999995 456799999965321 0 112334444444 4444445556689999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++.+|+++||||||++||.++.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|.+.+++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 151 ALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999998764 3789999999999995 59999999999999999887653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=354.17 Aligned_cols=215 Identities=26% Similarity=0.370 Sum_probs=180.1
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--C---CCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP--I---CGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~--~---~~G~I~IDG~di~~--i~~~ 1290 (1446)
.|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 4899999999964 469999999999999999999999999999999999975 4 58999999999964 3455
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCC---C-CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFH---M-ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~-~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|++++|+||+|.+|+.|+++|+.... . .. ++++.++++.+++.+. +.........+||+|||||+
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----i~~~~~~~~~~LS~Gq~qrv 157 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDE-----VKDHLHESALSLSGGQQQRV 157 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccc-----hhhHHhcCcccCCHHHHHHH
Confidence 6788999999999999999999986421 1 11 1233444444443221 22344556678999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|++|||||||++||.++.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|.+...+
T Consensus 158 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 158 CIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999887667899999999999875 8999999999999999887655
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=347.55 Aligned_cols=207 Identities=26% Similarity=0.349 Sum_probs=177.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+. .++++|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 7 ~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 5999999999963 36999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEeCCCCCCCCcHHHhcCCCC----CC-ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFH----MN-DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1298 ~VpQdp~lF~gTIR~NLdp~~----~~-~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
|+||+|.+|+.|+++|+.... .. .++++ .+.++.+|++ +.......+||+|||||++||||++++
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~---------~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIF---------LDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHHHHH---------HHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999996421 11 11122 2344444664 455667778999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEe-CCEEEEEecc
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILD-HGHLVCISFI 1435 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~-~G~vvE~~~~ 1435 (1446)
|+++||||||++||..+.+.+.+.|++.. .++|+|+|||+++.+..||+|++|+ ++..++.|+.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARY 222 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhh
Confidence 99999999999999999999999998764 3789999999999999999999995 4444555554
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=369.35 Aligned_cols=201 Identities=27% Similarity=0.358 Sum_probs=169.6
Q ss_pred cccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH----hcceEEEeCCCCCCCC-
Q 000521 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG- 1308 (1446)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l----R~~i~~VpQdp~lF~g- 1308 (1446)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.|+.+.+...+ |++++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998877654 4689999999999975
Q ss_pred cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCC
Q 000521 1309 SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385 (1446)
Q Consensus 1309 TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD 1385 (1446)
|+++|+.+.. ..+.++..+ ...+.++.+|++........+||||||||++|||||+.+|+|||||||||+||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD 196 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD 196 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 9999997432 112221111 12233444466655566667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1386 AQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1386 ~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+.+.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++..++
T Consensus 197 ~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 197 PLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 999999999998763 48999999999998865 8999999999999999887654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=348.65 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=185.4
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|.... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~~~----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDG----PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRR 76 (237)
T ss_pred CEEEEEEEecCCCC----ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhh
Confidence 35789999985321 2469999999999999999999999999999999999999999999876
Q ss_pred eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000521 669 SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~ 747 (1446)
.++|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|.++..+..+.+|||||||||+||||++.+
T Consensus 77 ~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 77 QVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred cEEEEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 3899999999999999999988643 334455556666778877888998988888999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhc
Q 000521 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 748 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRN-MHD-ICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999988876 333 3457899999999999988999999999999999999887654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=349.27 Aligned_cols=212 Identities=27% Similarity=0.376 Sum_probs=178.1
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+. .++++|+||+|++||++||+|++|||||||+++|.|+++|.+|+|.+||.++...+. .|+.+++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 579999999964 369999999999999999999999999999999999999999999999999987664 3678999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||+|.+|.+ |+++|+.+... .+..+.. ....+.++.+|++........+||+|||||++||||++++|++
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-----ERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999976 99999864211 1111110 1122333444666556666678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|.+.+++
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999999999999999987643 7999999999999865 8999999999999999876554
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=352.19 Aligned_cols=215 Identities=22% Similarity=0.361 Sum_probs=180.3
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCee-----CCCCChHh-
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1291 (1446)
.++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5899999999964 369999999999999999999999999999999999999999999999999 87776654
Q ss_pred ---HhcceEEEeCCCC--CCC-CcHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000521 1292 ---LRGRFAVVPQSPF--LFE-GSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1292 ---lR~~i~~VpQdp~--lF~-gTIR~NLdp----~~~~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1360 (1446)
.|+.++|+||+|. ++. .|+++|+.. +......++.+ ...+.++.+|++ +..+..+.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEIDAARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCChhHHhCCCccCCHHHHH
Confidence 3567999999984 343 478888742 11111112211 234555666776 4677888899999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|++||||++++|+||||||||++||.++.+.+.+.|++..+ +.|+|+|||+++.+.+ ||+|++|++|++++.|.+..
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999987643 7899999999999975 99999999999999998876
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
++
T Consensus 239 ~~ 240 (258)
T PRK11701 239 VL 240 (258)
T ss_pred Hh
Confidence 64
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=353.99 Aligned_cols=215 Identities=24% Similarity=0.341 Sum_probs=183.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~--i~~~ 1290 (1446)
.+.+++.+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.|+.. .+..
T Consensus 8 ~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4889999999964 3699999999999999999999999999999999999986 79999999999965 3445
Q ss_pred hHhcceEEEeCCCCCCCCcHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEGSLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~gTIR~NLdp~~~------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1446)
.+|++++|+||+|.+|..|+++|+.+... ..++++.++++.+++.+.+. ...++...+||+|||||++|
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrv~l 160 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-----DKLKVSGLSLSGGQQQRLCI 160 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHH
Confidence 67889999999999999999999975421 11234566666666543322 23345667899999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEe--------CCEEEEEecc
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILD--------HGHLVCISFI 1435 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~--------~G~vvE~~~~ 1435 (1446)
|||++++|+||+|||||++||..+.+.+.+.|++..+++|+|+|||+++.+.+ ||||++|+ +|++++.|++
T Consensus 161 aral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 161 ARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999999999999999987678899999999998865 89999996 8999999998
Q ss_pred chhh
Q 000521 1436 CRYF 1439 (1446)
Q Consensus 1436 ~~~~ 1439 (1446)
..++
T Consensus 241 ~~~~ 244 (261)
T PRK14263 241 AQIF 244 (261)
T ss_pred HHHH
Confidence 7654
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=348.49 Aligned_cols=212 Identities=27% Similarity=0.362 Sum_probs=172.6
Q ss_pred EEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEEcCeeCCCCChHhHh
Q 000521 1219 IEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~lR 1293 (1446)
++|+||+++|+.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999755 3689999999999999999999999999999999999999 99999999999885 34678
Q ss_pred cceEEEeCCCCCCCC-cHHHhcCCCCC-CChHHHHHHHHHccHHH-HHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1294 GRFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKE-EVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~g-TIR~NLdp~~~-~~d~ei~~aL~~~~L~~-~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
++++++||++.+|++ |+++|+.+... .......+..+.....+ .++.++++........+||+|||||++||||+++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 899999999999987 99999974311 00000001111111122 3333466555555667899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCc-hhH-hhcCEEEEEeCCEEEEEe
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRI-STV-LNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl-~ti-~~~DrIlvl~~G~vvE~~ 1433 (1446)
+|++|||||||++||..+.+.+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 478999999998 355 568999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=354.49 Aligned_cols=216 Identities=25% Similarity=0.370 Sum_probs=182.3
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEEcCeeCCC--CCh
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPV 1289 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~--i~~ 1289 (1446)
+.|+++|++++|+. +.+|+|+||+|++||.+||+|++|||||||+++|.|+++|+ +|+|.+||.|++. .+.
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 46999999999964 36999999999999999999999999999999999999985 8999999999853 345
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcCCCC----CCCh----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLDPFH----MNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLdp~~----~~~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
..+|+.++++||++.+|+.|++||+.+.. ..++ +++.++++.+++.+.+ +...+.....||+|||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~~~~LSgGq~qr 158 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-----KHKIHKSALDLSGGQQQR 158 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-----hhHhcCCcccCCHHHHHH
Confidence 67889999999999999999999996421 1121 2344555555543322 223455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeC-----CEEEEEe
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDH-----GHLVCIS 1433 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~-----G~vvE~~ 1433 (1446)
++||||++++|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++ |++++.|
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 238 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeC
Confidence 999999999999999999999999999999999998742 48999999999999875 899999999 9999999
Q ss_pred ccchhh
Q 000521 1434 FICRYF 1439 (1446)
Q Consensus 1434 ~~~~~~ 1439 (1446)
.+..++
T Consensus 239 ~~~~~~ 244 (261)
T PRK14258 239 LTKKIF 244 (261)
T ss_pred CHHHHH
Confidence 998765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=358.59 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=179.8
Q ss_pred CccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEEcCeeCCCC--C
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-----ICGGQILVDGLNIINT--P 1288 (1446)
Q Consensus 1216 ~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-----~~~G~I~IDG~di~~i--~ 1288 (1446)
...|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +
T Consensus 37 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 37 KPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred ceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 346899999999964 369999999999999999999999999999999999865 4999999999998653 3
Q ss_pred hHhHhcceEEEeCCCCCCCCcHHHhcCCCC---CC-Ch----HHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHH
Q 000521 1289 VRDLRGRFAVVPQSPFLFEGSLRDNLDPFH---MN-DD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1289 ~~~lR~~i~~VpQdp~lF~gTIR~NLdp~~---~~-~d----~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQ 1360 (1446)
...+|++++|+||+|.+|++|+++|+.+.. .. +. +++.++++..++.+. +..........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-----VSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccc-----hhhHhhCChhhCCHHHHH
Confidence 346788999999999999999999997431 11 11 223344444443221 112334556689999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|++|||||+++|++|||||||++||.++.+.+.+.|++..+++|||+|+|+++.+.+ ||+|++|++|++++.|.+.+++
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887667899999999999875 8999999999999999887653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=358.36 Aligned_cols=213 Identities=28% Similarity=0.444 Sum_probs=184.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++||+.+|.. ...+|+||||+|++||.+|++||||||||||+++|.|+++|++|+|.++|.|...- ....|+++|
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 4788999999973 24799999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
|+||+|.+++. |++|||+++.. ..++++.++++..+|.+ .-......||+|||||+.||+||+
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~---------~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED---------KANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch---------hhCcchhhcCHHHHHHHHHHHHHh
Confidence 99999998876 99999986532 12345666666665543 113334469999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-cEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhhh
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSECK-G-MTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFIF 1441 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~-~-~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~~ 1441 (1446)
.+|++|||||||++||+.+...+.+.|++..+ + +||++.||.++.+.. ||||++|++|+++..|++.++..+
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999998765 4 799999999999987 999999999999999988875443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=342.20 Aligned_cols=201 Identities=22% Similarity=0.361 Sum_probs=170.6
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++||+++|+. .++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 578999999999999999999999999999999999999999999999997644 46788999
Q ss_pred EeCCCCCCCC-cHHHhcCCC-CC-C-----ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFEG-SLRDNLDPF-HM-N-----DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~-~~-~-----~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||+|.+|.+ |+++|+... .. . .++++.++++..+ ++........+||+|||||++||||+++
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG---------IADYLDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcC---------cHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999975 999998632 11 1 1223444455444 4444444555899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
+|++++|||||++||.++.+.+.+.|++.. .++|+|+|||+++.+.+ ||+|++|++|++++.|.
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999998764 37899999999999875 89999999999998864
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=352.78 Aligned_cols=215 Identities=27% Similarity=0.399 Sum_probs=177.9
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC-----CceEEEcCeeCCC--CChH
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC-----GGQILVDGLNIIN--TPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~-----~G~I~IDG~di~~--i~~~ 1290 (1446)
.++++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 4789999999963 46999999999999999999999999999999999999874 8999999999975 3455
Q ss_pred hHhcceEEEeCCCCCCCC-cHHHhcCCCC---C-CChHHHHH----HHHHccHHHHHHhCCCchhhhcCCCCCChhHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---M-NDDLKIWS----VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~g-TIR~NLdp~~---~-~~d~ei~~----aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQr 1361 (1446)
.+|++++|+||+|.+|++ |+++|+.... . ..+++..+ .++..++++. +.........+||||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-----VKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-----hhhhhcCCcccCCHHHHHH
Confidence 778899999999999985 9999996321 1 12222222 2333333221 1222334456899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++||||++++|++|||||||++||..+.+.+.+.|++..+++|+|++||+++.+.+ ||||++|++|++++.|.+.+++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999887668999999999999986 8999999999999999887653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=353.00 Aligned_cols=213 Identities=23% Similarity=0.278 Sum_probs=180.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--------CceEEEcCeeCCCCChH
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--------GGQILVDGLNIINTPVR 1290 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~--------~G~I~IDG~di~~i~~~ 1290 (1446)
++++|++++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.++...+..
T Consensus 2 l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 789999999964 36999999999999999999999999999999999999998 99999999999988888
Q ss_pred hHhcceEEEeCCCC-CCCCcHHHhcCCCCC-C----C--hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHH
Q 000521 1291 DLRGRFAVVPQSPF-LFEGSLRDNLDPFHM-N----D--DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~-lF~gTIR~NLdp~~~-~----~--d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl 1362 (1446)
.+|+.++|+||++. +|+.|+++|+..... . . ..+. .....+.++.+|+++..+.....||||||||+
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv 154 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRD-----GEIAWQALALAGATALVGRDVTTLSGGELARV 154 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHH-----HHHHHHHHHHcCcHhhhcCCcccCCHHHHHHH
Confidence 88889999999986 578899999965321 0 0 0110 01123334444676667777778999999999
Q ss_pred HHHHHhc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEE
Q 000521 1363 CLARALL---------KSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLV 1430 (1446)
Q Consensus 1363 ~LARALL---------r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vv 1430 (1446)
+||||++ .+|++|||||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+. .||+|++|++|+++
T Consensus 155 ~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~ 234 (272)
T PRK13547 155 QFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIV 234 (272)
T ss_pred HHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE
Confidence 9999999 59999999999999999999999999987643 789999999999986 59999999999999
Q ss_pred EEeccchh
Q 000521 1431 CISFICRY 1438 (1446)
Q Consensus 1431 E~~~~~~~ 1438 (1446)
+.|.+..+
T Consensus 235 ~~g~~~~~ 242 (272)
T PRK13547 235 AHGAPADV 242 (272)
T ss_pred EecCHHHH
Confidence 99887654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=344.46 Aligned_cols=206 Identities=22% Similarity=0.360 Sum_probs=174.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++||+++|+.. ..|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .+++++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999632 249999999999999999999999999999999999999999999999987654 3678999
Q ss_pred EeCCCCCCCC-cHHHhcCCCC-CC------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFH-MN------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~-~~------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||+|.+|++ |+++|+.... .. .++++.++++.++ ++..+......||+|||||++||||+++
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~qrv~laral~~ 146 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG---------IEDLLARLPGQLSGGQRQRVALARCLVR 146 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC---------cHHHHhCCcccCCHHHHHHHHHHHHHhc
Confidence 9999999986 9999997421 11 1223444555544 4444444555799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|+++||||||++||.++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 147 ~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 147 EQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999987643 7899999999999865 8999999999999999887654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=345.61 Aligned_cols=206 Identities=25% Similarity=0.347 Sum_probs=175.4
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hHh
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DLR 1293 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~lR 1293 (1446)
++++|++++|++.. ..+|+|+||++++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996532 4699999999999999999999999999999999999999999999999999877643 468
Q ss_pred cceEEEeCCCCCCC-CcHHHhcCCCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1294 GRFAVVPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~-gTIR~NLdp~~~----~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
+.++|+||+|.+|. .|+.+|+.+... .+.++..+ ...+.++.+|++........+||+|||||++||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 89999999999987 699999975321 12222211 123444555776666667778999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEE
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHL 1429 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~v 1429 (1446)
+++|++|+|||||++||.++.+.+.+.|++.. .++|+|+|+|+++....||+|++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999998765 37999999999998777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=344.23 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=187.7
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|... .++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (229)
T cd03254 2 EIEFENVNFSYDEK-----KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLR 76 (229)
T ss_pred eEEEEEEEEecCCC-----CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHh
Confidence 47899999998531 2359999999999999999999999999999999999999999999875
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000521 669 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~ 746 (1446)
.++|++|+|++++.|++||+.++.+ ...++..+.++.++++..++.+|.|.++..+....+|||||||||+||||+++
T Consensus 77 ~~i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 77 SMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred hhEEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999998754 34456677788889988899999999999999999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 747 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.++.||++++|++|++.+.|+.+++..
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEA-LEK-LMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999988876 433 345789999999999988899999999999999999887754
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=350.35 Aligned_cols=205 Identities=28% Similarity=0.353 Sum_probs=171.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +.+++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999964 4699999999999999999999999999999999999999999999999998642 346899
Q ss_pred EeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.+|+ .|+++|+.... .....+.. ....+.++.+|++........+||||||||++||||++++|++
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l 149 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL 149 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999887 59999996431 11211111 1123344444665555566678999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEe--CCEEEEEecc
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILD--HGHLVCISFI 1435 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~--~G~vvE~~~~ 1435 (1446)
|||||||++||+++.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.+.+
T Consensus 150 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999998763 38999999999999865 89999998 5999998643
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=350.05 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=175.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEEcCeeCCCCChHhH-hcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDL-RGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~l-R~~ 1295 (1446)
|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+. +|++|+|.+||.++...+.... |..
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 578999999963 46999999999999999999999999999999999994 7999999999999988877664 456
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCCC----------CChHHHHHHHHHccHHHHHHhCCCchhh-hcCCC-CCChhHHHHH
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFHM----------NDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGI-SFSVGQRQLI 1362 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~~----------~~d~ei~~aL~~~~L~~~i~~lgLdt~v-~e~G~-~LSgGQrQrl 1362 (1446)
++++||+|.+|++ |+++|+..... .+.++.. + .+.+.++.+|++... ..... .||+|||||+
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl 153 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL---K--LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRN 153 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH---H--HHHHHHHHcCCchhhcccccccCcCHHHHHHH
Confidence 9999999999986 89999853210 0111111 1 123344444665332 33333 4999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh--cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~--~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|++|||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|.+..+.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 154 EILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 99999999999999999999999999999999998764 47899999999999986 7999999999999999887443
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=347.71 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=190.8
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------- 668 (1446)
...++++|+++.|+.. . ..+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENN-L---KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred CceEEEEEEEEEeCCC-C---CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 4568999999999642 1 2369999999999999999999999999999999999999999999875
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000521 669 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly 745 (1446)
.++||+|+|+++++|++||+........+.+.++++..++.+.++.+|.|.++.+++.+.+||||||||++||||++
T Consensus 93 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 93 LRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred HhhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 48999999999999999999765444555677788888999899999999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 746 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
++|++++|||||++||+++.+.+++. +.. +.+++|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKV-VMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHH-HHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999998887765 433 345789999999999998999999999999999999988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=362.81 Aligned_cols=213 Identities=21% Similarity=0.326 Sum_probs=175.9
Q ss_pred cEEEEEEEEEecC--CCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC----CCCceEEEcCeeCCCCChHh
Q 000521 1218 LIEFQNVTMRYKP--SLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP----ICGGQILVDGLNIINTPVRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~--~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~----~~~G~I~IDG~di~~i~~~~ 1291 (1446)
-++++|++++|+. +...+|+||||+|++||.+||+|+||||||||+++|.|+.+ |++|+|.+||+|+.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999953 22469999999999999999999999999999999999986 58999999999999888766
Q ss_pred Hh----cceEEEeCCCC--CCC-CcHHHhcCCC-------CC-CC-----hHHHHHHHHHccHHHHHHhCCCch---hhh
Q 000521 1292 LR----GRFAVVPQSPF--LFE-GSLRDNLDPF-------HM-ND-----DLKIWSVLEKCHVKEEVEAVGLET---FVK 1348 (1446)
Q Consensus 1292 lR----~~i~~VpQdp~--lF~-gTIR~NLdp~-------~~-~~-----d~ei~~aL~~~~L~~~i~~lgLdt---~v~ 1348 (1446)
++ ++|++|||+|. +++ -||.+|+... .. .. ++++.++|+.+ ||+. ...
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~---------gL~~~~~~~~ 153 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRV---------GIKDHKDAMR 153 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHC---------CCCChHHHHh
Confidence 53 47999999996 333 4888887420 00 01 12233344444 5532 234
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEe
Q 000521 1349 ESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILD 1425 (1446)
Q Consensus 1349 e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~ 1425 (1446)
.....||||||||++|||||+.+|+|||+||||++||..+...+.+.|++..+ +.|+|+|||+++.+.. ||||+||+
T Consensus 154 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred CCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 55668999999999999999999999999999999999999999999987643 7899999999999965 99999999
Q ss_pred CCEEEEEeccchhh
Q 000521 1426 HGHLVCISFICRYF 1439 (1446)
Q Consensus 1426 ~G~vvE~~~~~~~~ 1439 (1446)
+|+|+|.|.+..++
T Consensus 234 ~G~ive~g~~~~i~ 247 (330)
T PRK15093 234 CGQTVETAPSKELV 247 (330)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999887765
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=327.48 Aligned_cols=207 Identities=28% Similarity=0.365 Sum_probs=172.4
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|.++.|.... ...++++||||++.+||..+|+|+||||||||.++|+|..+|++|+|.++|
T Consensus 3 ~l~v~nl~~~y~~~~--~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 3 LLSVRNLSIVYGGGK--FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred eEEEeceEEEecCCc--chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 478899999997542 122579999999999999999999999999999999999999999999987
Q ss_pred --eEEEEcCCCC--CC-CccHHHHHhcC-----CCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 --SIAYVPQVPW--IL-SGTIRDNILFG-----KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 --~i~yv~Q~p~--l~-~~ti~~nI~~g-----~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.|-+|+|+|. +- .-||++-|.=+ .+-.+++..++++..+|.... .......|||||||||
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRi 150 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRI 150 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHH
Confidence 3899999996 22 34888888532 122334577888888887643 2345568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
||||||..+|+++|||||||+||+.+...|++-+..-...++-|.|+|||++..+.+ ||||++|++|++++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999986443223455699999999999987 9999999999999999988886
Q ss_pred hc
Q 000521 818 VS 819 (1446)
Q Consensus 818 ~~ 819 (1446)
..
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 43
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=359.80 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=170.2
Q ss_pred EecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCC
Q 000521 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1306 (1446)
Q Consensus 1227 ~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF 1306 (1446)
+|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|++++|+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 4642 369999999999999999999999999999999999999999999999999976 3456788999999999999
Q ss_pred CC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCC
Q 000521 1307 EG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382 (1446)
Q Consensus 1307 ~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS 1382 (1446)
+. |+++|+.++.. .+..+..+ ...+.++.+|++........+||||||||++|||||+++|++|+|||||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEE-----RAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 86 99999975321 11111111 12233333455544455556899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1383 NVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1383 ~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+||+++.+.+.+.|++.. +++|||++||+++.+.+ ||+|++|++|++++.|++..+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999998764 47999999999999875 999999999999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=350.23 Aligned_cols=213 Identities=23% Similarity=0.341 Sum_probs=176.0
Q ss_pred cEEEEEEEEEecCC-------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH
Q 000521 1218 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~ 1290 (1446)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999521 24699999999999999999999999999999999999999999999999999766666
Q ss_pred hHhcceEEEeCCCC--CCCC-cHHHhcCCC---C-CCC----hHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhH
Q 000521 1291 DLRGRFAVVPQSPF--LFEG-SLRDNLDPF---H-MND----DLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQ 1358 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~--lF~g-TIR~NLdp~---~-~~~----d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQ 1358 (1446)
..|++++|+||+|. +++. |+.+|+... + ... ++++.++++.+ |++. .......+||+||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~~LS~G~ 154 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV---------GLLPDHASYYPHMLAPGQ 154 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc---------CCChHHHhcCchhcCHHH
Confidence 66778999999985 4444 888887531 1 111 12344444444 4432 2233445799999
Q ss_pred HHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEecc
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1359 rQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~ 1435 (1446)
|||++||||++++|+||||||||++||+++.+.+.+.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|.+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 234 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGST 234 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999999998864 37899999999999987 899999999999999887
Q ss_pred chhh
Q 000521 1436 CRYF 1439 (1446)
Q Consensus 1436 ~~~~ 1439 (1446)
..++
T Consensus 235 ~~~~ 238 (267)
T PRK15112 235 ADVL 238 (267)
T ss_pred HHHh
Confidence 6554
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=364.63 Aligned_cols=201 Identities=25% Similarity=0.323 Sum_probs=167.5
Q ss_pred cccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCe----eCCCCChHhHh----cceEEEeCCCCC
Q 000521 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL----NIINTPVRDLR----GRFAVVPQSPFL 1305 (1446)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~----di~~i~~~~lR----~~i~~VpQdp~l 1305 (1446)
.+|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||. |+...+.+.+| ++++||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5799999999999999999999999999999999999999999999996 67777665543 579999999999
Q ss_pred CC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccC
Q 000521 1306 FE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381 (1446)
Q Consensus 1306 F~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1381 (1446)
|+ .|+++|+.+.. ..+.++.. ....+.++.+||+........+||||||||++|||||+++|+||||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPt 192 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPF 192 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 98 69999997432 11222111 11223333345555455556689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1382 ANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1382 S~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|+||+.+.+.+++.|++..+ ++|+|+|||+++.+. .||||++|++|++++.|++..++
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 193 SALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999987643 799999999999975 59999999999999999987654
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=343.26 Aligned_cols=206 Identities=26% Similarity=0.415 Sum_probs=175.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+. .+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. .|+++++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 578999999963 38999999999999999999999999999999999999999999999999987654 3789999
Q ss_pred EeCCCCCCC-CcHHHhcCCCC---CCC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFH---MND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~---~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+||++.+|+ .|+++|+.... ..+ ++++.++++.+ |+...+.....+||+|||||++||||+++
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML---------GIDHLLNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc---------CChhHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 999999986 69999996321 111 12233444444 44444555566899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+|++++|||||++||.++.+.+.+.+++..+ ++|+|++||+++.+.+ ||+|++|++|++++.|++.++
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999987643 8999999999999876 899999999999999886543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-37 Score=327.45 Aligned_cols=171 Identities=44% Similarity=0.760 Sum_probs=161.8
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+...+++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+...+|+++++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999997543469999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
+||+|.+|+.|++||+ ||+|||||++||||++++|++|+||
T Consensus 81 ~~~~~~~~~~t~~e~l---------------------------------------LS~G~~~rl~la~al~~~p~llllD 121 (171)
T cd03228 81 VPQDPFLFSGTIRENI---------------------------------------LSGGQRQRIAIARALLRDPPILILD 121 (171)
T ss_pred EcCCchhccchHHHHh---------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9999999999999997 9999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCE
Q 000521 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1428 (1446)
|||++||.++.+.+.+.|++..+++|+|+++|+++.+..||++++|++|+
T Consensus 122 EP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 122 EATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999999988767899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=343.12 Aligned_cols=211 Identities=31% Similarity=0.484 Sum_probs=186.7
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------e
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------~ 669 (1446)
+++|+++.|.... .++++|+||++++|++++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (234)
T cd03251 2 EFKNVTFRYPGDG----PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQ 77 (234)
T ss_pred EEEEEEEEeCCCC----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhh
Confidence 5788999885321 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000521 670 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1446)
Q Consensus 670 i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~ 748 (1446)
++|++|+|++++.|++||+.++.. +.++.+.+..+.+.+.+.++.+|.|.++..+....+||||||||++||||++.+|
T Consensus 78 i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 78 IGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred EEEeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998743 3455667777888888889999988888899999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHhc
Q 000521 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 749 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 158 PILILDEATSALDTESERLVQAA-LER-LMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 99999999999999999988776 433 3457899999999999988999999999999999998887644
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=346.79 Aligned_cols=216 Identities=28% Similarity=0.370 Sum_probs=179.2
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcC------eeCCCCChH
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG------LNIINTPVR 1290 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG------~di~~i~~~ 1290 (1446)
..++++|++++|+. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+|| .|+.+.+..
T Consensus 9 ~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 9 DVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 35999999999964 4699999999999999999999999999999999999999986666554 677777778
Q ss_pred hHhcceEEEeCCCCCCCC-cHHHhcCCCC---CC-ChHHHHHHHHHccHHHHHHhCCCc----hhhhcCCCCCChhHHHH
Q 000521 1291 DLRGRFAVVPQSPFLFEG-SLRDNLDPFH---MN-DDLKIWSVLEKCHVKEEVEAVGLE----TFVKESGISFSVGQRQL 1361 (1446)
Q Consensus 1291 ~lR~~i~~VpQdp~lF~g-TIR~NLdp~~---~~-~d~ei~~aL~~~~L~~~i~~lgLd----t~v~e~G~~LSgGQrQr 1361 (1446)
.+|++++|+||+|.+|.+ |+++|+.... .. .+++.++. +.+..+.+|++ ...+..+..||+|||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 889999999999999986 9999997431 11 22232221 12222333443 23455667899999999
Q ss_pred HHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1362 ICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1362 l~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++||||++++|++++|||||++||..+.+.+.+.|++..+++|+|+|||+++.+. .||++++|++|++++.|.+..++
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999988767899999999999995 59999999999999998876554
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=339.90 Aligned_cols=206 Identities=32% Similarity=0.443 Sum_probs=184.8
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+... +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSLRYRPNL----PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEEecCCCC----cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 368899999996321 2469999999999999999999999999999999999999999998876
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000521 669 -SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~ 747 (1446)
.++|++|+|.+++.|++|||.+......++..+.++..++.+.+..+|.|.++..++.+.+||||||||++||||++.+
T Consensus 78 ~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 78 SRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred hhEEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 4899999999999999999987666666777788888999988999999999999999999999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecC
Q 000521 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 748 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1446)
|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKT-IRE-AFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999988776 433 345689999999999998999999999999988765
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=351.20 Aligned_cols=221 Identities=21% Similarity=0.338 Sum_probs=182.8
Q ss_pred cEEEEEEEEEecCC-------CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-
Q 000521 1218 LIEFQNVTMRYKPS-------LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV- 1289 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~-------~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~- 1289 (1446)
.|+++||+++|+.. ..++++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++..++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 38999999999741 3579999999999999999999999999999999999999999999999999988765
Q ss_pred --HhHhcceEEEeCCCC--CC-CCcHHHhcCCC-CCCChHHHHHHHHHccHHHHHHhCCCch-hhhcCCCCCChhHHHHH
Q 000521 1290 --RDLRGRFAVVPQSPF--LF-EGSLRDNLDPF-HMNDDLKIWSVLEKCHVKEEVEAVGLET-FVKESGISFSVGQRQLI 1362 (1446)
Q Consensus 1290 --~~lR~~i~~VpQdp~--lF-~gTIR~NLdp~-~~~~d~ei~~aL~~~~L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl 1362 (1446)
..+|++++|+||++. ++ ..|+++|+... ....+ +...-....+.+.++.+|+++ ..+.....||+|||||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl 160 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS--LDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRV 160 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHH
Confidence 346889999999983 44 36999997431 10000 001111223455566668874 56677778999999999
Q ss_pred HHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1363 CLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+||||++++|+||||||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++...+
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 161 CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 999999999999999999999999999999999987643 7899999999999985 8999999999999999888765
Q ss_pred h
Q 000521 1440 I 1440 (1446)
Q Consensus 1440 ~ 1440 (1446)
.
T Consensus 241 ~ 241 (268)
T PRK10419 241 T 241 (268)
T ss_pred C
Confidence 3
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=325.30 Aligned_cols=202 Identities=25% Similarity=0.380 Sum_probs=170.3
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|++-.|+.. ..+|+||||+|++||+++|+|+|||||||||++|.|..+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~~-----~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYPGG-----HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecCCC-----ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 358899999999743 3359999999999999999999999999999999999999999999886
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCCC------------CChhhHHHHHH---HhcchHHHhhccCCCcccccCCC
Q 000521 669 -----SIAYVPQVPWILSG-TIRDNILFGKN------------YDPQSYSETLK---ACTLDVDISLMVGGDMAYIGEKG 727 (1446)
Q Consensus 669 -----~i~yv~Q~p~l~~~-ti~~nI~~g~~------------~~~~~~~~v~~---~~~l~~di~~~~~gd~t~ig~~g 727 (1446)
+|||++|++.|.+. ||.+|++.|+- +.++....+++ ..++.+ ..-.+.
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~-----------~A~qra 145 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILD-----------KAYQRA 145 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHH-----------HHHHHh
Confidence 59999999998865 99999997742 33444444443 333322 223466
Q ss_pred CccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCE
Q 000521 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQ 806 (1446)
Q Consensus 728 ~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~ 806 (1446)
.+|||||+|||+|||||+++|+|+|-|||+++|||.+++++++.+..-....|.|+|+.-|++++.. +||||+-|++|+
T Consensus 146 ~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ 225 (258)
T COG3638 146 STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGR 225 (258)
T ss_pred ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCc
Confidence 7999999999999999999999999999999999999999998744332456889999999999865 599999999999
Q ss_pred EEEecChhHHH
Q 000521 807 VKWIGSSADLA 817 (1446)
Q Consensus 807 i~~~g~~~~l~ 817 (1446)
|+..|+.+|+.
T Consensus 226 ivfDg~~~el~ 236 (258)
T COG3638 226 IVFDGPASELT 236 (258)
T ss_pred EEEeCChhhhh
Confidence 99999998864
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=326.65 Aligned_cols=170 Identities=32% Similarity=0.556 Sum_probs=157.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||++++||.++|+|+||||||||+++|.|+++|++|+|.+||.++...+ ..+|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998766 677899999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
+||+|.+|.+ |+++|+. ||+|||||++||||++++|+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~--------------------------------------LS~G~~qrv~laral~~~p~illl 119 (173)
T cd03230 78 LPEEPSLYENLTVRENLK--------------------------------------LSGGMKQRLALAQALLHDPELLIL 119 (173)
T ss_pred EecCCccccCCcHHHHhh--------------------------------------cCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999887 9999973 999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEE
Q 000521 1378 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHL 1429 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~v 1429 (1446)
||||++||..+.+.+.+.|++.. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 120 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 120 DEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999998764 4689999999999888 5899999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=338.10 Aligned_cols=203 Identities=30% Similarity=0.412 Sum_probs=175.1
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.+.++|.+|.|+.. .++|+|+||++++|+.++|+|+||||||||++.+.|.++|++|.|.++|
T Consensus 3 ~i~~~~l~~~y~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~ 77 (235)
T COG1122 3 MIEAENLSFRYPGR-----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLEL 77 (235)
T ss_pred eEEEEEEEEEcCCC-----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHh
Confidence 46789999999753 3459999999999999999999999999999999999999999998866
Q ss_pred --eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
++|||.|+| .++..||.|.+.||.. .++ ++.+++++.|++.+..+. ...+||||||||
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqR 146 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQR 146 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceee
Confidence 399999999 6899999999999853 333 456778888888765443 345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
||||.+|..+|++++||||||+||+...+.+++.+..-....++|+|++||+++.+.. ||++++|++|+++.+|++.++
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999886332212336899999999999876 999999999999999999887
Q ss_pred Hhc
Q 000521 817 AVS 819 (1446)
Q Consensus 817 ~~~ 819 (1446)
.+.
T Consensus 227 ~~~ 229 (235)
T COG1122 227 FND 229 (235)
T ss_pred hhh
Confidence 653
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=347.08 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=173.8
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEEcCeeCCCCChHhHh
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR 1293 (1446)
.++++|++++| + .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +..+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999998632 2234
Q ss_pred cceEEEeCCCC-CCC--CcHHHhcCC----CC-CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1294 GRFAVVPQSPF-LFE--GSLRDNLDP----FH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1294 ~~i~~VpQdp~-lF~--gTIR~NLdp----~~-~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
++++|+||+|. .|. .|+.+|+.. .+ ...+++++++++.+++.+. ++.++.....||+|||||++||
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA------ARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh------hhhhhcCCcccCHHHHHHHHHH
Confidence 67999999985 343 477777532 11 1223445555555443221 1245666778999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|+|+++.+.+ ||+|++|++|++++.|++.+++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999987643 7899999999999865 8999999999999999987664
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=341.35 Aligned_cols=209 Identities=31% Similarity=0.482 Sum_probs=184.9
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------e
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------~ 669 (1446)
+++|+++.|+.. ..+++|+||+|++|++++|+||||||||||+++|.|+.+|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~ 76 (236)
T cd03253 2 EFENVTFAYDPG-----RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRA 76 (236)
T ss_pred EEEEEEEEeCCC-----CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhh
Confidence 578899988531 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000521 670 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1446)
Q Consensus 670 i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~ 748 (1446)
++|++|+|++++.|++||+.++.. ...+...+.++.+++.+.+..+|.|.++.++.+..+||||||||++||||++.+|
T Consensus 77 i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p 156 (236)
T cd03253 77 IGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP 156 (236)
T ss_pred EEEECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 899999999999999999998753 3344456677888898888999999999999999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 749 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+.+++..
T Consensus 157 ~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 157 PILLLDEATSALDTHTEREIQAA-LRD-VSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred CEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999988876 333 334789999999999998899999999999999998887754
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=348.62 Aligned_cols=214 Identities=25% Similarity=0.370 Sum_probs=178.1
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEEcCeeCCCC-----Ch
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC---GGQILVDGLNIINT-----PV 1289 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~---~G~I~IDG~di~~i-----~~ 1289 (1446)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++... +.
T Consensus 4 ~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 4899999999963 46999999999999999999999999999999999999886 49999999998654 34
Q ss_pred HhHhcceEEEeCCCCCCCC-cHHHhcCCCCCC-----------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChh
Q 000521 1290 RDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMN-----------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVG 1357 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~g-TIR~NLdp~~~~-----------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgG 1357 (1446)
..+|++++|+||++.+|++ |+++|+...... .+++. +....+.++.+|++.........||+|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G 156 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQ-----KQRALQALTRVGMVHFAHQRVSTLSGG 156 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHH-----HHHHHHHHHHcCCHHHHhCCccccCHH
Confidence 5678899999999998875 999999643110 00110 111233444446655556667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEec
Q 000521 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1358 QrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~ 1434 (1446)
||||++||||++.+|++|||||||++||.++.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~ 236 (262)
T PRK09984 157 QQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236 (262)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998764 3789999999999865 599999999999999998
Q ss_pred cchh
Q 000521 1435 ICRY 1438 (1446)
Q Consensus 1435 ~~~~ 1438 (1446)
+..+
T Consensus 237 ~~~~ 240 (262)
T PRK09984 237 SQQF 240 (262)
T ss_pred HHHh
Confidence 8764
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=327.45 Aligned_cols=172 Identities=33% Similarity=0.510 Sum_probs=159.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC--hHhHhcce
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP--VRDLRGRF 1296 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~--~~~lR~~i 1296 (1446)
|+++|++++|+. .++++|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ....|+.+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 578999999964 46999999999999999999999999999999999999999999999999998876 56788999
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1375 (1446)
+|+||+|.+|.+ |+++|+... ||+|||||++||||++++|+++
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~------------------------------------lS~G~~qr~~la~al~~~p~ll 122 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG------------------------------------LSGGQQQRVALARALAMDPDVL 122 (178)
T ss_pred EEEecCCccCCCCCHHHheeec------------------------------------CCHHHHHHHHHHHHHHCCCCEE
Confidence 999999998865 999998643 9999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCE
Q 000521 1376 CLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGH 1428 (1446)
Q Consensus 1376 lLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1428 (1446)
+|||||++||..+.+.+.+.|++..+ ++|+|+++|+++.+.+ ||+|++|++|+
T Consensus 123 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 123 LLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999987654 6899999999999985 89999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=338.95 Aligned_cols=452 Identities=15% Similarity=0.177 Sum_probs=316.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCh--h---HHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000521 333 TQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD--G---EIQTFMSVDTDRTVNLAN-SFHDAWSLPFQIGVAL 406 (1446)
Q Consensus 333 ~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~--g---~i~nlms~D~~~i~~~~~-~~~~~~~~pl~i~i~~ 406 (1446)
....|...++..+.|..|...+.+|-|.-....+-.... + ..-..+..|+..+.+... ....+..+.+.++.-.
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~ 183 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFT 183 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 346677889999999999999999999877543322111 1 122477888877766443 3344445555555545
Q ss_pred HHHhhHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCc
Q 000521 407 YLLYTQVK---------------FAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGW 471 (1446)
Q Consensus 407 ~lL~~~lg---------------~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~ 471 (1446)
..||...| ..+.+.++.+++...+..+++|...+...+..+.-..--.....+..+...|-+|+.
T Consensus 184 ~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~G 263 (604)
T COG4178 184 GILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRG 263 (604)
T ss_pred HHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcC
Confidence 56664333 222222222233333333444444443333333333333455678889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 000521 472 EQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPT---LFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSF 548 (1446)
Q Consensus 472 e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~Lt~~~~ft~l~l~~~l~~pl~~l 548 (1446)
|+...+++++.-..=++..++......-...+...... +++.+ .++-.+..+.++.|.+.++-..|+.+...++.+
T Consensus 264 E~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l-i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL-IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH-hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99888777765444444333322221111111111111 11111 111224577899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC---CchhhhhhcCCCCcccCCCccC-CCCCceEEEEecEEEecCCCcccccccce
Q 000521 549 PWVINGLIDAFISIRRLTRFLGCSE---YKHELEQAANSPSYISNGLSNF-NSKDMAVIMQDATCSWYCNNEEEQNVVLN 624 (1446)
Q Consensus 549 ~~~i~~~~~a~~s~~RI~~fL~~~e---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~f~w~~~~~~~~~~~l~ 624 (1446)
...++.+.+=+++..|+.+|-..-+ .++.... .. ...... +..+..|.++|++..-+.. ...++
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~----~~---~~~~~~~~~~~~~i~~~nl~l~~p~~-----~~ll~ 410 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPA----RT---GRRIDFDDNADHGITLENLSLRTPDG-----QTLLS 410 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccC----cc---cccccccccccceeEEeeeeEECCCC-----Ceeec
Confidence 9999999999999999999985322 1111000 00 000000 1115789999999986543 24599
Q ss_pred eeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEe-C-eEEEEcCCCCCCCccHHHHHhcCC---CCChhhH
Q 000521 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS-G-SIAYVPQVPWILSGTIRDNILFGK---NYDPQSY 699 (1446)
Q Consensus 625 ~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~-~-~i~yv~Q~p~l~~~ti~~nI~~g~---~~~~~~~ 699 (1446)
+.||++++|+-+.|.|+||||||||+++|.|..|--+|+|... + .+-|+||.|.+..||.||-|++.. +++++.+
T Consensus 411 ~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l 490 (604)
T COG4178 411 ELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAEL 490 (604)
T ss_pred cceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHH
Confidence 9999999999999999999999999999999999999999886 3 489999999999999999999864 2778999
Q ss_pred HHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC
Q 000521 700 SETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779 (1446)
Q Consensus 700 ~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~ 779 (1446)
.+++..|+|.+-.+.+.+-+ .=...||||||||+++||.++++|++++|||.|||||++++..+++. +.. .+.
T Consensus 491 ~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~-l~~-~lp 563 (604)
T COG4178 491 VAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQL-LKE-ELP 563 (604)
T ss_pred HHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHH-HHh-hCC
Confidence 99999999998888765432 23457999999999999999999999999999999999999999987 444 467
Q ss_pred CceEEEEccCcchhhhCCEEEEEeC
Q 000521 780 QKTRILCTHNVQAISAADMVVVMDK 804 (1446)
Q Consensus 780 ~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1446)
+.|+|-|.|+.......++.+.+.+
T Consensus 564 ~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 564 DATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCEEEEeccchhhHHHHhhheeecc
Confidence 8899999999998887777666643
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.81 Aligned_cols=204 Identities=25% Similarity=0.396 Sum_probs=170.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC----ChHhHhc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1294 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~ 1294 (1446)
+++ |++++|+.. .+ |+||+|++ |.+||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|+
T Consensus 2 ~~~-~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 355 899999753 34 99999999 99999999999999999999999999999999999998643 3445788
Q ss_pred ceEEEeCCCCCCCC-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1295 RFAVVPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~g-TIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+++|+||++.+|++ |+++|+..... ..+++ .+....+.++.+|++.........||||||||++||||++++|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQP 150 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999864 99999974321 11111 1112334455557776667777889999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
++|+|||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999987642 7899999999999864 8999999999998865
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=341.42 Aligned_cols=211 Identities=30% Similarity=0.482 Sum_probs=184.7
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------e
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------~ 669 (1446)
+++|+++.|+.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~i~~l~~~~~~~~~---~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (238)
T cd03249 2 EFKNVSFRYPSRPD---VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78 (238)
T ss_pred eEEEEEEecCCCCC---ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhh
Confidence 57889998854211 2459999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000521 670 IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1446)
Q Consensus 670 i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~ 748 (1446)
++|++|+|++++.|++||+.++.. ...+...+.++.+++.+.+..+|.|.++..+....+||||||||++||||++.+|
T Consensus 79 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p 158 (238)
T cd03249 79 IGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNP 158 (238)
T ss_pred EEEECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCC
Confidence 999999999998999999998743 2344556677778888888899999888889999999999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 749 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 159 ~llllDEP~~gLD~~~~~~l~~~-l~~-~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 159 KILLLDEATSALDAESEKLVQEA-LDR-AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999988876 433 236789999999999988999999999999999998877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=334.12 Aligned_cols=210 Identities=28% Similarity=0.379 Sum_probs=177.0
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCe---eCCCCChHhHhc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGL---NIINTPVRDLRG 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~---di~~i~~~~lR~ 1294 (1446)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+.+|.|+..|++|+|.+||. |.++++.+ .+
T Consensus 2 ~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~R 77 (345)
T COG1118 2 SIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--DR 77 (345)
T ss_pred ceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--hc
Confidence 3788899888864 36899999999999999999999999999999999999999999999999 77774443 36
Q ss_pred ceEEEeCCCCCCC-CcHHHhcCCCCCC-----ChH----HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000521 1295 RFAVVPQSPFLFE-GSLRDNLDPFHMN-----DDL----KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~-gTIR~NLdp~~~~-----~d~----ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1446)
+||+|.||.-||. .||++|+.++-+. ++. ++.+.|+.|+| +-.-.....+||||||||+||
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL---------~~la~ryP~QLSGGQrQRVAL 148 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQL---------EGLADRYPAQLSGGQRQRVAL 148 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcc---------cchhhcCchhcChHHHHHHHH
Confidence 7999999999997 4999999876421 222 33333444443 333334567899999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhhh
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYFI 1440 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~~ 1440 (1446)
||||...|++|+||||.++||.+-.+.+++-+++.. -++|+++|||+.+...+ ||||+||++|+|...|+|...|.
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999999888754 38999999999998765 99999999999999999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=359.23 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=175.8
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCC----ChHhHhc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINT----PVRDLRG 1294 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i----~~~~lR~ 1294 (1446)
|++ |++++|... .+ |+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +....|+
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 567 999999642 23 99999999999999999999999999999999999999999999998753 2445688
Q ss_pred ceEEEeCCCCCCC-CcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1295 RFAVVPQSPFLFE-GSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~-gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+++|+||++.+|+ .|+++|+.+... ..++++.++++.+ |++........+||||||||++|||||+++|
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~---------gl~~~~~~~~~~LSgGq~qRvalaraL~~~p 147 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL---------GIEPLLDRYPGSLSGGEKQRVAIGRALLTAP 147 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc---------CCchhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 9999999999997 499999975422 2233444444444 5555555666789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++||||||||+||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+|..++
T Consensus 148 ~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 99999999999999999999999987653 7899999999998865 8999999999999999987664
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=337.96 Aligned_cols=203 Identities=31% Similarity=0.389 Sum_probs=172.5
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ++++++
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 478999999964 46999999999999999999999999999999999999999999999999876422 357999
Q ss_pred EeCCCCCCC-CcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.+|. .|+++|+.++. ..+++++.++++..+ ++........+||+|||||++||||++++|++
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~---------l~~~~~~~~~~LS~G~~~rv~laral~~~p~l 145 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD---------LTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL 145 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcC---------CcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999886 59999986421 223445555555554 44334444567999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccc
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~ 1436 (1446)
|+|||||++||.++.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|.+.
T Consensus 146 lllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 146 LILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred EEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 99999999999999999999998764 4789999999999986 49999999999999988764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=359.91 Aligned_cols=188 Identities=28% Similarity=0.382 Sum_probs=159.4
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------------eEEEEcCCCCCCCc-
Q 000521 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILSG- 682 (1446)
Q Consensus 621 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------------~i~yv~Q~p~l~~~- 682 (1446)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| .++||+|++++++.
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~ 86 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHM 86 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCC
Confidence 359999999999999999999999999999999999999999999876 49999999999975
Q ss_pred cHHHHHhcCCCC---Ch-hh---HHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000521 683 TIRDNILFGKNY---DP-QS---YSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755 (1446)
Q Consensus 683 ti~~nI~~g~~~---~~-~~---~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDe 755 (1446)
||+|||.|+.++ +. ++ ..++++..+|+. ..+....+|||||||||+|||||+.+|+++||||
T Consensus 87 TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~-----------~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDE 155 (363)
T TIGR01186 87 TILQNTSLGPELLGWPEQERKEKALELLKLVGLEE-----------YEHRYPDELSGGMQQRVGLARALAAEPDILLMDE 155 (363)
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCch-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999986432 22 23 334444444433 2455667999999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHhc
Q 000521 756 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 756 p~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|||+||+.+.+++.+.+.......++|+|+|||+++++. .||+|++|++|++++.|+++++..+
T Consensus 156 P~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 156 AFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999998754321234789999999999864 5999999999999999999998754
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=358.74 Aligned_cols=208 Identities=24% Similarity=0.384 Sum_probs=174.8
Q ss_pred EEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCC----hHhHhcceEE
Q 000521 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP----VRDLRGRFAV 1298 (1446)
Q Consensus 1223 nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~----~~~lR~~i~~ 1298 (1446)
|++++|+.. .+ |+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+ ....|+++++
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999642 34 999999999999999999999999999999999999999999999987542 3456889999
Q ss_pred EeCCCCCCCC-cHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1446)
Q Consensus 1299 VpQdp~lF~g-TIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1376 (1446)
+||++.+|++ |+++|+.+... ....+. .....+.++.+|++...+.....||||||||++|||||+++|++|+
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lll 154 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLL 154 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999986 99999975322 111111 1112334444577766677777899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1377 LDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1377 LDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|||||++||..+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|.+..++
T Consensus 155 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 155 MDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999999999987643 7899999999999875 8999999999999999887654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=344.84 Aligned_cols=215 Identities=21% Similarity=0.339 Sum_probs=178.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCee-----CCCCChHh-
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLN-----IINTPVRD- 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~d-----i~~i~~~~- 1291 (1446)
.|+++||+++|++ ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 4899999999964 358999999999999999999999999999999999999999999999988 77766553
Q ss_pred ---HhcceEEEeCCCC--C-CCCcHHHhcCC----CCCCChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCCCCChhHHH
Q 000521 1292 ---LRGRFAVVPQSPF--L-FEGSLRDNLDP----FHMNDDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGISFSVGQRQ 1360 (1446)
Q Consensus 1292 ---lR~~i~~VpQdp~--l-F~gTIR~NLdp----~~~~~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~~LSgGQrQ 1360 (1446)
+++.++++||+|. + +..|+.+|+.. .......+. ...+.+.++.+|++ +..+.....|||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~q 155 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQ 155 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCChhhhhcCchhcCHHHHH
Confidence 3467999999985 2 33588888731 111111111 12334556666775 5677778899999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
|++|||||+++|++|+|||||++||..+.+.+.+.|++.. .+.|+|+|+|+++.+.. ||++++|++|++++.|.+..
T Consensus 156 rv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~ 235 (253)
T TIGR02323 156 RLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQ 235 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998764 37899999999999985 89999999999999998876
Q ss_pred hh
Q 000521 1438 YF 1439 (1446)
Q Consensus 1438 ~~ 1439 (1446)
++
T Consensus 236 ~~ 237 (253)
T TIGR02323 236 VL 237 (253)
T ss_pred Hh
Confidence 54
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=357.39 Aligned_cols=202 Identities=28% Similarity=0.422 Sum_probs=169.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|+++.|+.+ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ 77 (356)
T PRK11650 3 GLKLQAVRKSYDGK-----TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRD 77 (356)
T ss_pred EEEEEeEEEEeCCC-----CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 37889999998421 2359999999999999999999999999999999999999999999987 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
||||+|++.+|+ .||+|||.|+.. .+. ++.+++++..+|+.... ....+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-----------RKPRELSGGQRQRVAMG 146 (356)
T ss_pred EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHH
Confidence 999999999996 599999998743 222 34556667677754433 34468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHhc
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|||+.+|+++|||||||+||+.+.+++.+.+ ..-. ..+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEI-QRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999888763 3212 23789999999998765 5999999999999999999998654
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=331.85 Aligned_cols=190 Identities=23% Similarity=0.322 Sum_probs=161.9
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEEcCeeCCCCChHhH
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP---ICGGQILVDGLNIINTPVRDL 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~---~~~G~I~IDG~di~~i~~~~l 1292 (1446)
.+.++||+|.|+.. ..++|+|+||+|++||++||+|++|||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 47899999999753 4579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccC
Q 000521 1293 RGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1293 R~~i~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1371 (1446)
|++++|+||++.+|.+ |+++|+.+.... . .+ +....||+|||||++||||++++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------~------------~~----~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC---------K------------GN----EFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh---------c------------cc----cchhhCCHHHHHHHHHHHHHhhC
Confidence 8899999999988875 999999643110 0 12 23346999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEecc-CchhH-hhcCEEEEEeCCEEEEEe
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAH-RISTV-LNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1372 ~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaH-rl~ti-~~~DrIlvl~~G~vvE~~ 1433 (1446)
|++|+|||||++||.++.+.+.+.|++..+ ++|+|+++| +.+.+ ..||+|++|++|++++.|
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999987643 567666654 55666 458999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=327.79 Aligned_cols=172 Identities=30% Similarity=0.506 Sum_probs=156.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-HhHhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1296 (1446)
.++++|++++| +|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. +..|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 48999999998 8999999999999999999999999999999999999999999999999988764 4568899
Q ss_pred EEEeCCC---CC-CCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSP---FL-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp---~l-F~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+|+||+| .+ +..|++||+.+... ||+|||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------LS~G~~qrl~la~al~~~p 123 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL----------------------------------LSGGNQQKVVLARWLARDP 123 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh----------------------------------cCHHHHHHHHHHHHHccCC
Confidence 9999995 34 45799999864310 9999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEE
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~v 1429 (1446)
++|+|||||++||+++.+.+.+.|++.. +++|+|+++|+++.+.+ ||+|++|++|++
T Consensus 124 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 124 RVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999998764 47999999999999977 899999999975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=330.26 Aligned_cols=182 Identities=29% Similarity=0.442 Sum_probs=161.1
Q ss_pred cEEEEEEEEEecCC----CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEEcCeeCCCCChHh
Q 000521 1218 LIEFQNVTMRYKPS----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~----~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~ 1291 (1446)
.|+++||+++|+.. ..++|+|+||+|++||+++|+|++|||||||+++|.|++ +|++|+|.+||.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999752 256999999999999999999999999999999999999 9999999999999875 36
Q ss_pred HhcceEEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc
Q 000521 1292 LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1292 lR~~i~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr 1370 (1446)
+|++++++||++.+|.+ |+++|+.... . +. .||+|||||++||||+++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~-----------~~--------~LS~G~~qrv~laral~~ 128 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K-----------LR--------GLSGGERKRVSIALELVS 128 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H-----------hc--------cCCHHHHHHHHHHHHHHc
Confidence 78899999999998875 9999984210 0 00 699999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCch-hHh-hcCEEEEEeCCEEEEEe
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVL-NMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1371 ~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~-ti~-~~DrIlvl~~G~vvE~~ 1433 (1446)
+|++++|||||++||..+.+.+.+.|++.. +++|+|+|+|+++ .+. .||+|++|++|++++.|
T Consensus 129 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999998764 4899999999997 454 48999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=333.92 Aligned_cols=205 Identities=34% Similarity=0.467 Sum_probs=180.5
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|... . .++++|+||++++|++++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~-~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSFSYPNQ-E---IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEEEcCCC-C---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 36789999998532 1 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000521 669 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~ 746 (1446)
.++|++|+|++++.|++||+.++.. .++++..+.++.+++.+.++..|.|.+|.+.....+||||||||++||||+..
T Consensus 78 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 78 RNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred hhEEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 3899999999998999999988643 34556778888899988889999999999999999999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEec
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 747 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 811 (1446)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKER-LRQ-LLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999988876 333 33448999999999988789999999999997653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=351.42 Aligned_cols=209 Identities=27% Similarity=0.427 Sum_probs=171.5
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---------
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------- 668 (1446)
.+..++++|++|.|+.... ...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQE-NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCceEEEEeEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 3457899999999964211 113469999999999999999999999999999999999999999998863
Q ss_pred --------------------eEEEEcCCC--CCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCC
Q 000521 669 --------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGD 719 (1446)
Q Consensus 669 --------------------~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd 719 (1446)
.|+||+|+| ++++.||+|||.|+.. .+++ +.++.++.+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------- 167 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD--------- 167 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh---------
Confidence 279999998 7899999999998742 2222 2333444444432
Q ss_pred cccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCE
Q 000521 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADM 798 (1446)
Q Consensus 720 ~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~ 798 (1446)
...++.+.+||||||||++|||||..+|+++||||||++||+.+.+.+++. +.....+++|+|++||+++.+. .||+
T Consensus 168 -~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~-L~~l~~~g~TiiivtHd~~~~~~~adr 245 (320)
T PRK13631 168 -SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL-ILDAKANNKTVFVITHTMEHVLEVADE 245 (320)
T ss_pred -hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence 234667889999999999999999999999999999999999999998876 3321235789999999999875 5999
Q ss_pred EEEEeCCEEEEecChhHHHh
Q 000521 799 VVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 799 i~~l~~G~i~~~g~~~~l~~ 818 (1446)
|++|++|++++.|+++++..
T Consensus 246 i~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 246 VIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEEECCEEEEeCCHHHHhc
Confidence 99999999999999998754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=313.65 Aligned_cols=212 Identities=26% Similarity=0.403 Sum_probs=181.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
+++.+++.+|++ ...+++||||+++.||.+||.|++||||||+++.|..++.|++|.|+|||+|+..-| ...|++||+
T Consensus 2 l~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcce
Confidence 688999999976 335899999999999999999999999999999999999999999999999998755 567999999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
++-+.-++. -|.||||.+|+. .++.++. +...+..+.++++..+..+-.+||-|+|||++|||||.++|+|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i 154 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI 154 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe
Confidence 997777775 499999988753 2333332 2233334444555555555557999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccch
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~-~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
++||||||+||..+.+.+++-|++... +++||+-||-++.++ -||||+++.+|+++..|++..
T Consensus 155 ~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 155 LVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred EEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHH
Confidence 999999999999999999999987654 999999999999998 699999999999999998764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=354.00 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=168.6
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|+.... ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 2 I~~~~lsk~y~~~~~--~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTK--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCc--ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 678999999963211 12469999999999999999999999999999999999999999999875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.|||++|++.+++ .|++|||.++.. .+. ++..++++..+|.+. ......+||||||||
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~-----------~~~~~~~LSgGqkQR 148 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDK-----------HDSYPSNLSGGQKQR 148 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 4899999999985 699999987532 222 234455555555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
|+|||||..+|+++|||||||+||+.+.+.+++. +..-.. .+.|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 149 V~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~l-L~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~ 227 (343)
T TIGR02314 149 VAIARALASNPKVLLCDEATSALDPATTQSILEL-LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227 (343)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999876 332112 37899999999999865 99999999999999999999
Q ss_pred HHh
Q 000521 816 LAV 818 (1446)
Q Consensus 816 l~~ 818 (1446)
+..
T Consensus 228 v~~ 230 (343)
T TIGR02314 228 IFS 230 (343)
T ss_pred HHc
Confidence 864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=317.03 Aligned_cols=215 Identities=26% Similarity=0.401 Sum_probs=182.0
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1296 (1446)
-++++|++..|.+ -.+|+||||++++||.++++||||+||||++++|+|+.++.+|+|.++|.||...+.++. |..|
T Consensus 3 mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 3789999999976 369999999999999999999999999999999999999999999999999999988764 6679
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCCC-ChHHHHHHHHHccHHHHHHhC-CCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHMN-DDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~~-~d~ei~~aL~~~~L~~~i~~l-gLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+||||..-+|+. ||.|||..+... .+++-++. .+++..+-+ -|....+..+.+|||||+|.++|||||+.+||
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999986 999999754321 11111110 022222222 56666677788999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchh
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+|+|||||.+|-+.--+.|.++|++..+ +-||+.|-++..... -+||.+||++|+|+..|++..+
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL 224 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAEL 224 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999988763 569999999999766 5899999999999999987765
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=329.57 Aligned_cols=181 Identities=23% Similarity=0.379 Sum_probs=160.0
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEEcCeeCCCCChHhHh
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR 1293 (1446)
.|+++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|.|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 58999999999642 246999999999999999999999999999999999986 489999999999986 5678
Q ss_pred cceEEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1294 GRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1294 ~~i~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
++++++||+|.+|.+ |+++|+... ..+ + +||||||||++||||++++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~---------~~~--------------~--------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFS---------ALL--------------R--------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHH---------HHH--------------h--------cCCHHHhHHHHHHHHHhcCC
Confidence 899999999988875 999998521 000 0 69999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchh--HhhcCEEEEEeC-CEEEEEe
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST--VLNMDEILILDH-GHLVCIS 1433 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~t--i~~~DrIlvl~~-G~vvE~~ 1433 (1446)
++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999998764 47999999999984 456999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=319.28 Aligned_cols=164 Identities=33% Similarity=0.449 Sum_probs=150.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
|+++|++++|+.+ +++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.++|. ++++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 5789999999643 46999999999999999999999999999999999999999999999873 68999
Q ss_pred EeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1299 VPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1299 VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
+||+|.++++|+++|+... ....||+|||||++||||++++|++++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~--------------------------------~~~~LS~G~~~rv~laral~~~p~~lllD 116 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP--------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLD 116 (166)
T ss_pred ECCCCccccccHHHHhhcc--------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9999999999999998642 23479999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCCE
Q 000521 1379 ECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G~ 1428 (1446)
|||++||.++.+.+.+.|++. ++|+|+|||+++....||+|++|++|-
T Consensus 117 EPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 117 EATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999876 689999999999888899999998863
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=325.61 Aligned_cols=177 Identities=32% Similarity=0.504 Sum_probs=158.7
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+++||+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 57899999964 4699999999999999999999999999999999999999999999999999988888888999999
Q ss_pred eCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 000521 1300 PQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDE 1379 (1446)
Q Consensus 1300 pQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDE 1379 (1446)
|| +++.+++.+ .+.....+||+|||||++||||++++|+++||||
T Consensus 79 ~q--------------------------~l~~~gl~~---------~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 123 (180)
T cd03214 79 PQ--------------------------ALELLGLAH---------LADRPFNELSGGERQRVLLARALAQEPPILLLDE 123 (180)
T ss_pred HH--------------------------HHHHcCCHh---------HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99 455555443 3344566899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHh-hcCEEEEEeCCEEEEEe
Q 000521 1380 CTANVDAQTASILQNAISSECK--GMTVITIAHRISTVL-NMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1380 aTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~ 1433 (1446)
||++||.++.+.+.+.|++..+ ++|+|++||+++.+. -||++++|++|++++.|
T Consensus 124 P~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 124 PTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999987654 789999999999985 58999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=328.64 Aligned_cols=183 Identities=22% Similarity=0.311 Sum_probs=162.1
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEEcCeeCCCCChHhH-hcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDL-RGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl--~~~~~G~I~IDG~di~~i~~~~l-R~~ 1295 (1446)
++++|++++|+. .++|+|+||++++||.+||+|++|||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999998876654 566
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
++|+||+|.+|++ |+++|++ ....+||+|||||++||||++++|+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l~---------------------------------~~~~~LS~G~~qrv~laral~~~p~i 125 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFLR---------------------------------YVNEGFSGGEKKRNEILQLLLLEPDL 125 (200)
T ss_pred EEEeecChhhccCccHHHHHh---------------------------------hccccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999886 5666550 01136999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh--hcCEEEEEeCCEEEEEeccc
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL--NMDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~--~~DrIlvl~~G~vvE~~~~~ 1436 (1446)
++|||||++||.++.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|...
T Consensus 126 lllDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 190 (200)
T cd03217 126 AILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKE 190 (200)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccHH
Confidence 99999999999999999999998764 3789999999999998 58999999999999998543
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=331.93 Aligned_cols=193 Identities=27% Similarity=0.376 Sum_probs=162.4
Q ss_pred EEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh----HhHhcce
Q 000521 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV----RDLRGRF 1296 (1446)
Q Consensus 1221 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~----~~lR~~i 1296 (1446)
++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..++. ...|+++
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999963 369999999999999999999999999999999999999999999999999875542 2467889
Q ss_pred EEEeCCCCCCC-CcHHHhcCCCCC---CC----hHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1297 AVVPQSPFLFE-GSLRDNLDPFHM---ND----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1297 ~~VpQdp~lF~-gTIR~NLdp~~~---~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
++++|+|.+|+ .|+++|+.+... .. ++++.++++ .+|++...+....+||+|||||++|||||
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~lS~G~~qr~~laral 149 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE---------KVGLNLKLKQKIYELSGGEQQRVALARAI 149 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------HcCchhhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999997 699999965211 11 122333333 34555455555668999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1424 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl 1424 (1446)
+++|++|||||||++||.++.+.+.+.|++.. +++|+|++||+++.+..||+|++|
T Consensus 150 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 150 LKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999998764 478999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=352.06 Aligned_cols=201 Identities=28% Similarity=0.417 Sum_probs=168.8
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++| +
T Consensus 6 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 79 (351)
T PRK11432 6 FVVLKNITKRFGS------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRD 79 (351)
T ss_pred EEEEEeEEEEECC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 5889999999952 2359999999999999999999999999999999999999999999976 5
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
||||+|++.+|+. ||+|||.|+.. .++ ++.+++++..++... ......+|||||||||+||
T Consensus 80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~-----------~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF-----------EDRYVDQISGGQQQRVALA 148 (351)
T ss_pred EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHH
Confidence 9999999999965 99999998743 222 234445555555422 2445678999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHhc
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|||+.+|+++|||||||+||+.+.+++.+. +..-. ..++|+|+|||+.+.+. .||+|++|++|+|.+.|+++++...
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~-l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREK-IRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999988876 33211 23789999999999875 5999999999999999999998654
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=301.23 Aligned_cols=197 Identities=24% Similarity=0.409 Sum_probs=170.9
Q ss_pred EecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCC
Q 000521 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLF 1306 (1446)
Q Consensus 1227 ~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF 1306 (1446)
.|.....++|+|+||++++||.++|.||||||||||++.+.-+.+|++|.++..|.|+++++++.+|++++|+-|.|.||
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLf 89 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALF 89 (223)
T ss_pred HhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccc
Confidence 46556668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHhcC-CCC---CCChH-HHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccC
Q 000521 1307 EGSLRDNLD-PFH---MNDDL-KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381 (1446)
Q Consensus 1307 ~gTIR~NLd-p~~---~~~d~-ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaT 1381 (1446)
.+||.+||- |+. ...|. .-.+-|+++++. ++.+..+-.+||||||||++|+|-|---|+||+|||+|
T Consensus 90 g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~--------~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 90 GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALP--------DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred ccchhhccccchHHhccCCChHHHHHHHHHcCCc--------hhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 999999985 332 22332 223334444332 23455566689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchh-HhhcCEEEEEeCCEEEE
Q 000521 1382 ANVDAQTASILQNAISSEC--KGMTVITIAHRIST-VLNMDEILILDHGHLVC 1431 (1446)
Q Consensus 1382 S~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~t-i~~~DrIlvl~~G~vvE 1431 (1446)
|+||..+.+.|.+.|.+++ ++..++.|||+-+. ++.+||++.+..|++-|
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999998887 47899999999987 88999999999987654
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=310.70 Aligned_cols=507 Identities=16% Similarity=0.145 Sum_probs=328.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000521 266 VRAICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDG-YVLAIALGLTSILKSFFDTQYSFHLSKLKL 344 (1446)
Q Consensus 266 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g-~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~ 344 (1446)
...++|.++|+++....+.++..+... .++-.+-+++-+......+ ..+.+++.+..++.+.. ......-.|.
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~---~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~i---s~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGI---GLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLI---SQLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 457788999998887776665544333 3333333333321111111 11222222222222221 2222333444
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Q 000521 345 KLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAIT 424 (1446)
Q Consensus 345 ~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~nlms~D~~~i~~~~~~~~~~~~~pl~i~i~~~lL~~~lg~a~l~~~~v~ 424 (1446)
.+-..+...+-+|.+.-|....++..++.++.-.+.|+..|...+..+.++.-+.+-+..+...|++.-+..+...++.+
T Consensus 78 ~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~i 157 (546)
T COG4615 78 HFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWI 157 (546)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44444555566777877777777777889999999999999977777776655444444444455555555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 000521 425 ILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWE--QIFSSWLMKTRSSEVKHLSTRKYLDAWC-V 501 (1446)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~e~L~~ik~IK~~g~e--~~~~~~i~~~R~~El~~~~~~~~~~~~~-~ 501 (1446)
++.+..+.+...+..++..+..+.-|+-.+..+.++.|-|.+|+..-- ..+.+.+... .+|.+. +..+...+. .
T Consensus 158 vv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~-a~~~r~--~~~~~n~f~~l 234 (546)
T COG4615 158 VVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPD-AQEYRH--HIIRANTFHLL 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcc-hHHHHh--hhhhhhHHHHH
Confidence 777777888888888888888899999999999999999999987522 1122211110 111111 111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhhh
Q 000521 502 FFWATTPTLFSLFTFGLFALMGHQL-DAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQ 580 (1446)
Q Consensus 502 ~~~~~~~~~~~~~~f~~~~~~~~~L-t~~~~ft~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~e~~~~~~~ 580 (1446)
........+..++....|+...-.. +...+.|....+-.++.|+.++...+|.+..|.++++||.++=..|+..+- ..
T Consensus 235 a~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~-~~ 313 (546)
T COG4615 235 AVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADF-PR 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccC-CC
Confidence 1122222333344444343322112 222444545556678899999999999999999999999987654433221 00
Q ss_pred hcCCCCcccCCCccCCCCCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC
Q 000521 581 AANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~ 660 (1446)
.... ++-..++++|+.|+|... .+-+..||++|++||++.|+|.||||||||++++.|.++|+
T Consensus 314 ~q~~------------p~~~~lelrnvrfay~~~-----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq 376 (546)
T COG4615 314 PQAF------------PDWKTLELRNVRFAYQDN-----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ 376 (546)
T ss_pred CCcC------------CcccceeeeeeeeccCcc-----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 0001 123468999999999643 34589999999999999999999999999999999999999
Q ss_pred CcEEEEeCe-------------EEEEcCCCCCCCccHHHHHhcCCC-CChhhHHHHHHHhcchHHHhhccCCCcccccCC
Q 000521 661 HGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726 (1446)
Q Consensus 661 ~G~i~~~~~-------------i~yv~Q~p~l~~~ti~~nI~~g~~-~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~ 726 (1446)
+|+|.++|+ ++-|+-|-|||+.+ ..++. -+++..++-++.-.+....+ +.+|.-+
T Consensus 377 sG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~l-----l~~e~~as~q~i~~~LqrLel~~kts-l~d~~fs----- 445 (546)
T COG4615 377 SGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQL-----LGPEGKASPQLIEKWLQRLELAHKTS-LNDGRFS----- 445 (546)
T ss_pred CCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhh-----hCCccCCChHHHHHHHHHHHHhhhhc-ccCCccc-----
Confidence 999999983 23344444554332 22222 34455555454444433221 2222211
Q ss_pred CCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 727 g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
...||-|||.|+|+--|+.-+.|||+|||=-+-=||+-++..++..+-.....|||++-||||-.+...|||++.+++|+
T Consensus 446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~ 525 (546)
T COG4615 446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQ 525 (546)
T ss_pred ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCc
Confidence 24699999999999999999999999999999999999988887744322456999999999999999999999999999
Q ss_pred EEEe
Q 000521 807 VKWI 810 (1446)
Q Consensus 807 i~~~ 810 (1446)
+++.
T Consensus 526 ~~e~ 529 (546)
T COG4615 526 LSEL 529 (546)
T ss_pred eeec
Confidence 9864
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=341.85 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=170.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++||+++|+++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ...+++++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 58999999999632 469999999999999999999999999999999999999999999999999752 12234699
Q ss_pred EEeCCCCC---CCCcHHHhcCCCC--------CC---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHH
Q 000521 1298 VVPQSPFL---FEGSLRDNLDPFH--------MN---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1298 ~VpQdp~l---F~gTIR~NLdp~~--------~~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~ 1363 (1446)
|+||+|.+ +..++++|+.... .. .++++.++++..+ ++........+||||||||++
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---------l~~~~~~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD---------MVEFRHRQIGELSGGQKKRVF 152 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcC---------ChhHhcCCcccCCHHHHHHHH
Confidence 99999865 4568999975321 00 1122334444444 443344455579999999999
Q ss_pred HHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1364 LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||++++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+++++ +|++++.|.+..++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999998764 47899999999998854 8999777 89999999988654
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=331.16 Aligned_cols=199 Identities=39% Similarity=0.692 Sum_probs=175.2
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
.+.|+.|.|+.. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~-----~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGYFSWGSG-----LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeEEecCCC-----CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 456888888643 2359999999999999999999999999999999999999999998854
Q ss_pred ---eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000521 669 ---SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly 745 (1446)
.++|++|+|.+++.|++||+.++.+++.++.+++++++++...++..|.|+++..+....+||||||||++||||++
T Consensus 77 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~ 156 (218)
T cd03290 77 NRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALY 156 (218)
T ss_pred hcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHh
Confidence 38999999999999999999987666666778899999999888889999999999999999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHH-hhcCcccCCceEEEEccCcchhhhCCEEEEEeCCE
Q 000521 746 HGSDIYMLDDVLSAVDAQVARWILSN-AIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQ 806 (1446)
Q Consensus 746 ~~~~illLDep~s~lD~~~~~~i~~~-~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~ 806 (1446)
.+|+++||||||++||+.+.+.+.+. ++.....+++|+|++||+.+.++.||++++|++|.
T Consensus 157 ~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 157 QNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887762 22221234689999999999998899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=338.34 Aligned_cols=215 Identities=21% Similarity=0.296 Sum_probs=175.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcC--CCCCCceEEEcCeeCCCCChHhHhc-
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL--TPICGGQILVDGLNIINTPVRDLRG- 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl--~~~~~G~I~IDG~di~~i~~~~lR~- 1294 (1446)
.++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+ ++|++|+|.+||.++...+.+..++
T Consensus 7 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4899999999964 3699999999999999999999999999999999998 6899999999999999888766554
Q ss_pred ceEEEeCCCCCCCC-cHHHhcCCCCC----C---ChHHHHHHHHHccHHHHHHhCCCc-hhhhcCCC-CCChhHHHHHHH
Q 000521 1295 RFAVVPQSPFLFEG-SLRDNLDPFHM----N---DDLKIWSVLEKCHVKEEVEAVGLE-TFVKESGI-SFSVGQRQLICL 1364 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~g-TIR~NLdp~~~----~---~d~ei~~aL~~~~L~~~i~~lgLd-t~v~e~G~-~LSgGQrQrl~L 1364 (1446)
.++++||+|.+|++ |+++|+..... . .+.+-++.. ....+.++.+|+. +..+.... .||||||||++|
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~l 162 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEI 162 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHcCCchhhhccccccCCCHHHHHHHHH
Confidence 58999999999987 78999753210 0 010000111 1122333334664 34444443 599999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh--cCEEEEEeCCEEEEEeccc
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN--MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~--~DrIlvl~~G~vvE~~~~~ 1436 (1446)
|||++++|+|+||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|++.
T Consensus 163 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 163 LQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999999999999999998764 48999999999999875 8999999999999999987
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=305.04 Aligned_cols=193 Identities=25% Similarity=0.381 Sum_probs=167.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
|+|+|++-.|+.. .++|+||||+|++||++.++||||||||||+|+|.++..|++|+|.++|
T Consensus 2 I~f~~V~k~Y~~g-----~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~ 76 (223)
T COG2884 2 IRFENVSKAYPGG-----REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPF 76 (223)
T ss_pred eeehhhhhhcCCC-----chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccch
Confidence 6789999999754 2359999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEcCCCCCC-CccHHHHHhcCCCC---C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~-~~ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
+||+|+|+--|. +-||.||+.|.... . +++..++++..+|.+....+|. .||||||||
T Consensus 77 LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQR 145 (223)
T COG2884 77 LRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQR 145 (223)
T ss_pred hhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHH
Confidence 599999999766 55999999986431 2 2456778888899888888875 799999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|+||||+..+|++||-||||-+|||..+..|++. +..-...|.||+++||+.+.+.. --+++.+++|+++...
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~l-feeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRL-FEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHH-HHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999875 33324568899999999999987 5689999999998653
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=335.59 Aligned_cols=198 Identities=28% Similarity=0.367 Sum_probs=163.9
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|+++.|.. .++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (235)
T cd03261 2 ELRGLTKSFGG------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRL 75 (235)
T ss_pred eEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHH
Confidence 57889998852 2359999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC----CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVPWILSG-TIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~-ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|.+++. |++||+.++.. .++ ++..++++.+++... ......+||||||||
T Consensus 76 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 144 (235)
T cd03261 76 RRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGA-----------EDLYPAELSGGMKKR 144 (235)
T ss_pred hcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHH
Confidence 38999999998876 99999987532 222 234445555555432 234456899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 v~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 223 (235)
T cd03261 145 VALARALALDPELLLYDEPTAGLDPIASGVIDDL-IRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEE 223 (235)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988876 332122 37899999999998765 99999999999999999888
Q ss_pred HHh
Q 000521 816 LAV 818 (1446)
Q Consensus 816 l~~ 818 (1446)
+..
T Consensus 224 ~~~ 226 (235)
T cd03261 224 LRA 226 (235)
T ss_pred HcC
Confidence 753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=335.94 Aligned_cols=195 Identities=28% Similarity=0.366 Sum_probs=159.5
Q ss_pred CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEe-CCCCCCC-CcH
Q 000521 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVP-QSPFLFE-GSL 1310 (1446)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~Vp-Qdp~lF~-gTI 1310 (1446)
.++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ...+|++++|+| |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 346788999997 6677764 699
Q ss_pred HHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHH
Q 000521 1311 RDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387 (1446)
Q Consensus 1311 R~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~ 1387 (1446)
++|+.... ..++++..+. ..+.++.+|++.........||+|||||++||||++.+|++|||||||++||++
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 187 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV 187 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 99985422 1222222211 112233335554444455679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1388 TASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1388 Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999998764 37899999999998865 8999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=351.31 Aligned_cols=202 Identities=26% Similarity=0.385 Sum_probs=170.2
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|
T Consensus 13 ~~L~l~~l~~~~~~------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 86 (375)
T PRK09452 13 PLVELRGISKSFDG------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86 (375)
T ss_pred ceEEEEEEEEEECC------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 45889999999852 2359999999999999999999999999999999999999999999987
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCC---Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKNY---DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~~---~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~l 740 (1446)
.++||+|++.+|.. ||+|||.|+... ++ ++.+++++..++....+ ....+|||||||||+|
T Consensus 87 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~p~~LSgGq~QRVaL 155 (375)
T PRK09452 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-----------RKPHQLSGGQQQRVAI 155 (375)
T ss_pred CEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHH
Confidence 39999999999865 999999987432 22 24455666666654443 3446899999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHh
Q 000521 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 741 ARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||||+.+|+++|||||||+||+...+.+.+. +..-. ..+.|+|+|||+.+.+. .||+|++|++|+|.+.|+++++..
T Consensus 156 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 156 ARAVVNKPKVLLLDESLSALDYKLRKQMQNE-LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999888776 33212 23789999999999865 599999999999999999999865
Q ss_pred c
Q 000521 819 S 819 (1446)
Q Consensus 819 ~ 819 (1446)
.
T Consensus 235 ~ 235 (375)
T PRK09452 235 E 235 (375)
T ss_pred C
Confidence 4
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=333.13 Aligned_cols=213 Identities=26% Similarity=0.431 Sum_probs=172.1
Q ss_pred EEEEEEEEEecCCC--CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-C----CCceEEEcCeeCCCCChHh
Q 000521 1219 IEFQNVTMRYKPSL--PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP-I----CGGQILVDGLNIINTPVRD 1291 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~--~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~-~----~~G~I~IDG~di~~i~~~~ 1291 (1446)
++++|++..|.... ..+++||||+|++||.+||||.|||||||+.++++|+++ | .+|+|.+||.|+.+++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 58899999997543 468999999999999999999999999999999999998 3 5799999999999999875
Q ss_pred H---h-cceEEEeCCCCC-CC--CcHHHhc----CCCCCC-Ch----HHHHHHHHHccHHHHHHhCCCch---hhhcCCC
Q 000521 1292 L---R-GRFAVVPQSPFL-FE--GSLRDNL----DPFHMN-DD----LKIWSVLEKCHVKEEVEAVGLET---FVKESGI 1352 (1446)
Q Consensus 1292 l---R-~~i~~VpQdp~l-F~--gTIR~NL----dp~~~~-~d----~ei~~aL~~~~L~~~i~~lgLdt---~v~e~G~ 1352 (1446)
+ | +.|++|||||.- |+ -||.+-+ ...... +. ++..+.|+.+ |++. .+..-..
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~V---------gi~~~~~~~~~YPh 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELV---------GIPDPERRLKSYPH 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHc---------CCCCHHHHHhhCCc
Confidence 4 3 479999999951 21 1333222 111111 11 1223333333 5443 4566677
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEE
Q 000521 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHL 1429 (1446)
Q Consensus 1353 ~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~v 1429 (1446)
.||||||||+.||-|++-+|++||-||||++||..+.+.|.+.|++.. .+.|+|+|||++..+.. ||||+||.+|+|
T Consensus 153 elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~i 232 (316)
T COG0444 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232 (316)
T ss_pred ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEE
Confidence 899999999999999999999999999999999999999999998765 48999999999998865 899999999999
Q ss_pred EEEeccchhhh
Q 000521 1430 VCISFICRYFI 1440 (1446)
Q Consensus 1430 vE~~~~~~~~~ 1440 (1446)
||.|....+|-
T Consensus 233 VE~g~~~~i~~ 243 (316)
T COG0444 233 VEEGPVEEIFK 243 (316)
T ss_pred EEeCCHHHHhc
Confidence 99999987764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=334.76 Aligned_cols=199 Identities=26% Similarity=0.391 Sum_probs=170.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| +.+++
T Consensus 4 ~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 4899999999964 3699999999999999999999999999999999999999999999987 45799
Q ss_pred EEeCCCCCCC---CcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1298 VVPQSPFLFE---GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~VpQdp~lF~---gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
|+||+|.++. .|+++|+......+++++.++++.+++.+. .......||+|||||++||||++++|++
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~---------~~~~~~~LSgGq~qrv~laral~~~p~l 141 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHL---------IDAPMQKLSGGETQRVLLARALLNRPQL 141 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHH---------HhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998765 389999754333455667777777766543 3334557999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
|+|||||++||.++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++ ++++.|.+..++
T Consensus 142 llLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 142 LVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 999999999999999999999987643 7899999999999865 999999965 799998876553
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.65 Aligned_cols=208 Identities=24% Similarity=0.355 Sum_probs=173.3
Q ss_pred EEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEE
Q 000521 1220 EFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVV 1299 (1446)
Q Consensus 1220 ~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~V 1299 (1446)
+++||+++ .+|+|+||+|++||++||+|++|||||||+++|.|++++ +|+|.+||.++...+...+|+.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEe
Confidence 56788774 279999999999999999999999999999999999864 99999999999988888888899999
Q ss_pred eCCCC-CCCCcHHHhcCCCCCC--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhcc------
Q 000521 1300 PQSPF-LFEGSLRDNLDPFHMN--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK------ 1370 (1446)
Q Consensus 1300 pQdp~-lF~gTIR~NLdp~~~~--~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr------ 1370 (1446)
||++. ++..|+++|+..+... +.++. .....+.++.+|++.........||+|||||++||||+++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 99985 4567999999764321 11111 1122344444566655666677899999999999999997
Q ss_pred -CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEEeCCEEEEEeccchhh
Q 000521 1371 -SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 -~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
+|++|||||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|.+..++
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 679999999999999999999999998764 4789999999999775 58999999999999999876553
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=336.44 Aligned_cols=213 Identities=18% Similarity=0.264 Sum_probs=168.4
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCC--CCCCceEEEcCeeCCCCChHhHh-cc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLR-GR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~lR-~~ 1295 (1446)
|+++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ +|++|+|.+||.++...+....+ ..
T Consensus 2 i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 789999999964 36999999999999999999999999999999999995 69999999999999888776654 57
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCC-C---CCChHHHHHHHHHccH----HHHHHhCCCchh-hhcCC-CCCChhHHHHHHH
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPF-H---MNDDLKIWSVLEKCHV----KEEVEAVGLETF-VKESG-ISFSVGQRQLICL 1364 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~-~---~~~d~ei~~aL~~~~L----~~~i~~lgLdt~-v~e~G-~~LSgGQrQrl~L 1364 (1446)
++++||+|.+++. |..+|+... . .....+ .++..++ .+.++.++++.. ..... ..||||||||++|
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~l 156 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQE---PLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 156 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccc---cchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHH
Confidence 9999999987765 544443210 0 000000 1111111 223333355321 22222 2699999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CcEEEEeccCchhHhh--cCEEEEEeCCEEEEEeccc
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK-GMTVITIAHRISTVLN--MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~-~~TvI~IaHrl~ti~~--~DrIlvl~~G~vvE~~~~~ 1436 (1446)
|||++++|+||||||||++||.++.+.+.+.|++..+ ++|||+|||+++.+.. +|+|++|++|++++.|++.
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 9999999999999999999999999999999887643 7899999999999987 7999999999999998875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=334.32 Aligned_cols=192 Identities=28% Similarity=0.370 Sum_probs=160.1
Q ss_pred cceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCCCCC-CcHHHhc
Q 000521 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE-GSLRDNL 1314 (1446)
Q Consensus 1236 L~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~-gTIR~NL 1314 (1446)
|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+++||+|.+|+ .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 589999999999999999999999999999999999999999999999876543 2489999999987 5999998
Q ss_pred CCC-----CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHH
Q 000521 1315 DPF-----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389 (1446)
Q Consensus 1315 dp~-----~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te 1389 (1446)
... ...++++..+ .+.+.++.+|++.........||||||||++|||||+++|++|||||||++||+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 642 1122222111 122334444666555556678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccch
Q 000521 1390 SILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1390 ~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|.+..
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 99999998764 37899999999998865 89999999999999887653
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=350.37 Aligned_cols=201 Identities=29% Similarity=0.401 Sum_probs=169.7
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|++++|.. ..+|+|+||++++||+++|+|||||||||||++|.|..+|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ 77 (353)
T TIGR03265 4 YLSIDNIRKRFGA------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCC
Confidence 4789999999852 2359999999999999999999999999999999999999999999986 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
+|||+|++-+|+ .||+|||.|+.. .+. ++.+++++..+|+.. ......+|||||||||+||
T Consensus 78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~-----------~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGS-----------ERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCch-----------hhCChhhCCHHHHHHHHHH
Confidence 999999999996 599999998742 222 345556666555432 3456678999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHhc
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|||+.+|+++|||||||+||+.+.+++.+.+ ..... .+.|+|+|||+.+.+. .||+|++|++|++++.|+++++...
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L-~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEI-RQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHH-HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999888763 32122 3789999999999865 5999999999999999999998754
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=342.51 Aligned_cols=205 Identities=25% Similarity=0.381 Sum_probs=170.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++++|+.... ..+++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 i~~~~v~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSP-FASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCc-ccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 678999999964211 112469999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 ----~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.++||+|+| .+++.|+.|||.|+.. .++ +++.++++..+|..++ ......+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 379999998 7888999999998742 222 3456666666664332 2355679999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1446)
||++||||++.+|+++||||||++||+.+.+.+.+. +..-..+|+|+|++||+++.+. .||+|++|++|+++++|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL-FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999988875 3321234789999999999885 59999999999999999999
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
++..
T Consensus 230 ~~~~ 233 (288)
T PRK13643 230 DVFQ 233 (288)
T ss_pred HHHc
Confidence 8754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=342.44 Aligned_cols=205 Identities=27% Similarity=0.416 Sum_probs=170.1
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++++|+.... ...++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 l~~~~l~~~y~~~~~-~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTP-FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCc-ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 689999999964211 113469999999999999999999999999999999999999999998876
Q ss_pred ----eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 ----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 ----~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.|+||+|+| .+++.||+|||.|+.. .+. ++.+++++.++|..++. .....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~ 151 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQM 151 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHH
Confidence 389999998 5888899999988632 222 34566777777754332 345568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEecCh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 813 (1446)
||++|||||+.+|+++||||||++||+.+.+.+++. +..... .|.|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~-L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEM-FYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999988875 332112 3789999999999976 4999999999999999999
Q ss_pred hHHHh
Q 000521 814 ADLAV 818 (1446)
Q Consensus 814 ~~l~~ 818 (1446)
+++..
T Consensus 231 ~~~~~ 235 (290)
T PRK13634 231 REIFA 235 (290)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=341.51 Aligned_cols=207 Identities=28% Similarity=0.441 Sum_probs=170.0
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.... ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13637 2 SIKIENLTHIYMEGTP-FEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD 80 (287)
T ss_pred EEEEEEEEEECCCCCc-cccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence 4789999999964211 113469999999999999999999999999999999999999999998865
Q ss_pred ---eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000521 669 ---SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1446)
Q Consensus 669 ---~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 736 (1446)
.||||+|+| .+++.|++|||.|+.. .++ ++.+++++.++|.. .+........|||||||
T Consensus 81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKR 151 (287)
T ss_pred HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHH
Confidence 389999998 5778899999998632 232 23455666666641 12234566799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChh
Q 000521 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 737 Ri~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1446)
|++|||||+.+|+++||||||++||+.+.+++.+. +..... .|+|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNK-IKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999988875 333122 3789999999999875 59999999999999999999
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
++..
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=310.99 Aligned_cols=159 Identities=33% Similarity=0.515 Sum_probs=148.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-HhHhcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~ 1297 (1446)
|+++|++++|+. .++++|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++...+. +..|++++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 579999999964 369999999999999999999999999999999999999999999999999988875 45678899
Q ss_pred EEeCCCCCCCCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1298 ~VpQdp~lF~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
++|| ||+|||||++||||++++|++++|
T Consensus 79 ~~~q----------------------------------------------------LS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 79 MVYQ----------------------------------------------------LSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred EEEe----------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999 999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEE
Q 000521 1378 DECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVC 1431 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE 1431 (1446)
||||++||.++.+.+.+.|++.. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 107 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 107 DEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999998763 47899999999998865 89999999999976
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=347.36 Aligned_cols=201 Identities=32% Similarity=0.442 Sum_probs=168.0
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~L~i~~l~~~~~~------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKKSFGR------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEEEeCC------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 3678999999852 2359999999999999999999999999999999999999999999976 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
++||+|++.+++. |++|||.|+... +. ++.++.++..+|... ......+||||||||
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq~QR 144 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-----------ADRYPAQLSGGQKQR 144 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 9999999999975 999999987431 21 234455555555432 234557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
|+|||||+.+|+++|||||||+||+.+.+.+.+. +..... .+.|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 valArAL~~~P~llLLDEP~s~LD~~~r~~l~~~-L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~ 223 (353)
T PRK10851 145 VALARALAVEPQILLLDEPFGALDAQVRKELRRW-LRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQ 223 (353)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 333122 36899999999998665 99999999999999999999
Q ss_pred HHhc
Q 000521 816 LAVS 819 (1446)
Q Consensus 816 l~~~ 819 (1446)
+...
T Consensus 224 i~~~ 227 (353)
T PRK10851 224 VWRE 227 (353)
T ss_pred HHhC
Confidence 8654
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=340.75 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=168.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.... ...++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (286)
T PRK13646 2 TIRFDNVSYTYQKGTP-YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80 (286)
T ss_pred EEEEEEEEEEECCCCc-cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4789999999963211 113469999999999999999999999999999999999999999998875
Q ss_pred -----eEEEEcCCC--CCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 -----~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.||||+|+| .+++.|++|||.|+.. ++.+ +..+.++.++|+.+ ..+..+.+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq 150 (286)
T PRK13646 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQ 150 (286)
T ss_pred HHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 379999998 6888899999998632 2332 23344555555322 1245677999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecC
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~ 812 (1446)
|||++|||||+.+|+++||||||++||+.+.+.+.+. +.... ..|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRL-LKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999988875 33211 24789999999999875 599999999999999999
Q ss_pred hhHHHh
Q 000521 813 SADLAV 818 (1446)
Q Consensus 813 ~~~l~~ 818 (1446)
++++..
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 988754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=339.91 Aligned_cols=204 Identities=29% Similarity=0.401 Sum_probs=170.2
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|+.... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTFKYKEDQE---KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEEEcCCCCc---CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 4789999999963211 2369999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 -~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.++|++|+|. ++..||+|||.|+.. .++ ++..++++..+|+...+ ....+||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qrv 149 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-----------REPARLSGGQKQRV 149 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHH
Confidence 4899999984 566799999998732 232 34566677777754332 34468999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
+||||++.+|+++||||||++||+.+.+.+++. +..... .|+|+|++||+++.+..||+|++|++|+++..|+++++.
T Consensus 150 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 150 AIAGAVAMRPKIIILDEATSMLDPEGRLELIKT-IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999988875 333122 378999999999998789999999999999999998875
Q ss_pred hc
Q 000521 818 VS 819 (1446)
Q Consensus 818 ~~ 819 (1446)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 43
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=330.95 Aligned_cols=197 Identities=28% Similarity=0.394 Sum_probs=162.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCc-----cCCCcEEEEeC--------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM-----MLTHGSIHASG-------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~-----~~~~G~i~~~~-------- 668 (1446)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|.+ +|++|+|.++|
T Consensus 1 i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGD------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCC------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 357889998853 23599999999999999999999999999999999999 99999998865
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 -------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 -------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.++|++|+|.+++.|++||+.++... + +++..++++.+++.......++ +.+||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG 145 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGG 145 (227)
T ss_pred HHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHH
Confidence 38999999998878999999875321 1 2344556666666543332110 4689999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
||||++||||++.+|++++|||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 146 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 146 QQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL-IAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999998876 333 3233899999999998764 99999999999999888
Q ss_pred hhH
Q 000521 813 SAD 815 (1446)
Q Consensus 813 ~~~ 815 (1446)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 655
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=348.38 Aligned_cols=202 Identities=27% Similarity=0.382 Sum_probs=170.2
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCC--cEEEEeC---------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH--GSIHASG--------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~--G~i~~~~--------- 668 (1446)
..++++|++++|.. ..+|+|+||++++||+++|+|||||||||||++|.|+.+|++ |+|.++|
T Consensus 4 ~~l~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 4 GGIRIDHLRVAYGA------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred eEEEEEEEEEEECC------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH
Confidence 45889999999953 235999999999999999999999999999999999999999 9999876
Q ss_pred --eEEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 --SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.|+||+|++.+|.. ||+|||.|+.. .+. ++.+++++..+|+... .....+|||||||||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAA-----------AHLPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchh-----------hCChhhCCHHHHHHH
Confidence 49999999999965 99999998642 221 3455666666665433 344568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC--CceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~--~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~ 815 (1446)
+|||||..+|+++|||||||+||+...+++.+.+ .....+ |.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l-~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~ 225 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEI-AALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQA 225 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHH-HHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999888763 321222 689999999999865 499999999999999999999
Q ss_pred HHhc
Q 000521 816 LAVS 819 (1446)
Q Consensus 816 l~~~ 819 (1446)
+...
T Consensus 226 ~~~~ 229 (362)
T TIGR03258 226 LYDA 229 (362)
T ss_pred HHhC
Confidence 8654
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=340.77 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=169.0
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.... ...++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~-~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (305)
T PRK13651 2 QIKVKNIVKIFNKKLP-TELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80 (305)
T ss_pred EEEEEEEEEEECCCCC-ccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccc
Confidence 3788999999964321 112469999999999999999999999999999999999999999998752
Q ss_pred -------------------------eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhh
Q 000521 669 -------------------------SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISL 714 (1446)
Q Consensus 669 -------------------------~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~ 714 (1446)
.||||+|+| .+++.||+|||.|+.. .++ ++..++++.++|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-- 158 (305)
T PRK13651 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY-- 158 (305)
T ss_pred cccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh--
Confidence 379999987 5778899999998742 222 2345566666664322
Q ss_pred ccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh
Q 000521 715 MVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS 794 (1446)
Q Consensus 715 ~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~ 794 (1446)
.+....+||||||||++|||||+.+|+++||||||++||+...+.+.+. +.....+|+|+|++||+++.+.
T Consensus 159 --------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivtHd~~~~~ 229 (305)
T PRK13651 159 --------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEI-FDNLNKQGKTIILVTHDLDNVL 229 (305)
T ss_pred --------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeeCHHHHH
Confidence 2356678999999999999999999999999999999999998888875 3321234789999999999865
Q ss_pred -hCCEEEEEeCCEEEEecChhHHHh
Q 000521 795 -AADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 795 -~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
.||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 599999999999999999998754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=330.89 Aligned_cols=199 Identities=33% Similarity=0.463 Sum_probs=164.6
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|+++.|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 2 SIEVRNVSKRFGD------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred EEEEEeEEEEECC------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 3678999999852 2359999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCCC-------Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 670 IAYVPQVPWILS-GTIRDNILFGKNY-------DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 670 i~yv~Q~p~l~~-~ti~~nI~~g~~~-------~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
++|++|+|.++. .|++||+.++... +. ++.++.++.++++. .......+||||||||
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr 144 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQR 144 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHH
Confidence 899999999886 5999999876321 11 22344455555532 2344557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
++||||++.+|+++||||||++||+++.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 145 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (239)
T cd03296 145 VALARALAVEPKVLLLDEPFGALDAKVRKELRRW-LRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDE 223 (239)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHH
Confidence 9999999999999999999999999999988875 333122 37899999999998765 99999999999999999888
Q ss_pred HH
Q 000521 816 LA 817 (1446)
Q Consensus 816 l~ 817 (1446)
+.
T Consensus 224 ~~ 225 (239)
T cd03296 224 VY 225 (239)
T ss_pred Hh
Confidence 74
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=322.41 Aligned_cols=189 Identities=29% Similarity=0.438 Sum_probs=161.3
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|+... .++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~----~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDL----PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCC----cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 4688999999986321 2359999999999999999999999999999999999999999999875
Q ss_pred --eEEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000521 669 --SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~ 746 (1446)
.++||+|+|.++++|++||+.+...+++++ +.+++. ++++...||||||||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~---~~~~l~---------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEE---IYGALR---------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHH---HHHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 499999999999999999997654444332 222221 345678999999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecC
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 747 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1446)
+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+.+.+..||++++|++|++.+.|+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKT-IRE-EFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHH-HHH-hcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999888776 333 345789999999999988899999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=327.76 Aligned_cols=205 Identities=27% Similarity=0.444 Sum_probs=174.0
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---------
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------- 668 (1446)
....++++|+++.|+.... .++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPD---TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHK 84 (226)
T ss_pred cCceEEEEEEEEEeCCCCC---CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHH
Confidence 4467899999999964211 2369999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEcCCCCCCCccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000521 669 ----SIAYVPQVPWILSGTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1446)
Q Consensus 669 ----~i~yv~Q~p~l~~~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARa 743 (1446)
.++|++|+|.+++.|++||+.++... ....+.+..+...++.-++.++.|.++..+.+..+|||||||||+||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 85 YLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred HHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 38999999999999999999876432 2222333344455667788888788888899999999999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEE
Q 000521 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1446)
Q Consensus 744 ly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1446)
++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQA-LYD-WPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988876 333 3446899999999999988999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=350.03 Aligned_cols=200 Identities=28% Similarity=0.410 Sum_probs=168.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------e
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~ 669 (1446)
.++++|++++|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 3 ~l~i~~l~~~~~~------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~ 76 (369)
T PRK11000 3 SVTLRNVTKAYGD------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERG 76 (369)
T ss_pred EEEEEEEEEEeCC------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCC
Confidence 3788999999852 2359999999999999999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
|+||+|++.++.. |++|||.|+.. .+. ++.+++++.++++... .....+|||||||||+||
T Consensus 77 i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 77 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999999998865 99999998643 222 3456666666665433 334568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
|||+.+|+++|||||||+||+.+.+.+.+. +..... .+.|+|+|||+++.+.. ||+|++|++|++.+.|+++++..
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999988775 332122 37899999999998764 99999999999999999998864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=365.78 Aligned_cols=214 Identities=25% Similarity=0.389 Sum_probs=179.9
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEcCeeCCCCChHh-Hhc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRG 1294 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~ 1294 (1446)
.|+++|++++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4899999999963 3699999999999999999999999999999999999996 8999999999998777654 467
Q ss_pred ceEEEeCCCCCCCC-cHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1295 RFAVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1295 ~i~~VpQdp~lF~g-TIR~NLdp~~~------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
+++||||+|.+|+. |+++|+.+... .+.++..+ .+.+.++.+|++........+||||||||++||||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~a 157 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKA 157 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHH
Confidence 89999999998875 99999975421 11111111 12334445566555555556899999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|+++|+|||||||||+||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 158 LNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999998753 47899999999999875 899999999999999887654
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=323.91 Aligned_cols=194 Identities=25% Similarity=0.332 Sum_probs=164.8
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.... ...|+++++
T Consensus 2 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 789999999964 36999999999999999999999999999999999999999999999999997654 456789999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCC----CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHM----NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~----~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+||++.+++ .|++||+..... .+++++.++++..++.+ ........||+|||||++||||++++|+
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~LS~G~~qrl~la~al~~~p~ 149 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG---------FEDVPVRQLSAGQQRRVALARLWLTRAP 149 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHH---------HhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999998886 599999964321 22344555555555543 3344456799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhc-CEEEEE
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILIL 1424 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~-DrIlvl 1424 (1446)
+++|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+..| +|++++
T Consensus 150 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 150 LWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999998763 478999999999999665 777776
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=332.27 Aligned_cols=203 Identities=22% Similarity=0.291 Sum_probs=170.4
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc---CCCcEEEEeC---------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM---LTHGSIHASG--------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~---~~~G~i~~~~--------- 668 (1446)
.++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLNLFYGK------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeEEEECC------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 4678999999852 235999999999999999999999999999999999974 6899999876
Q ss_pred ----eEEEEcCCCCCCCccHHHHHhcCCCC---------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 ----SIAYVPQVPWILSGTIRDNILFGKNY---------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 ----~i~yv~Q~p~l~~~ti~~nI~~g~~~---------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.++|++|+|.+++.|++||+.++... ++++..++++.+++...+.. ...+.+.+||||||
T Consensus 76 ~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 148 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQ 148 (246)
T ss_pred HHhhhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHH
Confidence 38999999999999999999875311 12245667777777654432 23556789999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 814 (1446)
||++||||++++|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 226 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEEL-LKE-LSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESK 226 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999888775 433 3457899999999998764 9999999999999999988
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
++..
T Consensus 227 ~~~~ 230 (246)
T PRK14269 227 EFFE 230 (246)
T ss_pred HHHh
Confidence 8753
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=320.57 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=164.9
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+ ..+|+++++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999987653 567899999
Q ss_pred EeCCCCCC-CCcHHHhcCCCCC-CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 000521 1299 VPQSPFLF-EGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1446)
Q Consensus 1299 VpQdp~lF-~gTIR~NLdp~~~-~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILl 1376 (1446)
+||++.++ ..|+++|+..+.. ..++++.++++..++.+. ......+||+|||||++||||++++|+++|
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrl~laral~~~p~lll 148 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF---------EDRPVAQLSAGQQRRVALARLLLSGRPLWI 148 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh---------hcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999876 4799999975432 345566666676666532 223345799999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEE
Q 000521 1377 LDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1424 (1446)
Q Consensus 1377 LDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl 1424 (1446)
|||||++||.++.+.+.+.|++.. +++|+|+|||+...+. .||+++++
T Consensus 149 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 149 LDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999998753 4799999999877654 57998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=370.33 Aligned_cols=215 Identities=23% Similarity=0.300 Sum_probs=148.1
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHh------cCC---CCCCce------------
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLT---PICGGQ------------ 1276 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~------rl~---~~~~G~------------ 1276 (1446)
.++++|++. ..|+|+|++|++||.+||+|.+|||||||+.-++ ++. .+..+.
T Consensus 614 ~L~v~~l~~-------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 686 (943)
T PRK00349 614 FLKLKGARE-------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKV 686 (943)
T ss_pred eEEecCCcc-------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCce
Confidence 478888752 2599999999999999999999999999998764 211 122233
Q ss_pred EEEcCeeCCCCC----------hHhHhcce---------EEEeCCCCCCC-----------CcHHHhcCCCCC-------
Q 000521 1277 ILVDGLNIINTP----------VRDLRGRF---------AVVPQSPFLFE-----------GSLRDNLDPFHM------- 1319 (1446)
Q Consensus 1277 I~IDG~di~~i~----------~~~lR~~i---------~~VpQdp~lF~-----------gTIR~NLdp~~~------- 1319 (1446)
|.||-.+|..-+ .+.+|.-. ++-++.-.+.+ |+++.|+.+...
T Consensus 687 v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 766 (943)
T PRK00349 687 IDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDV 766 (943)
T ss_pred EEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCCcccCCCCCCCCCCCcccccceEEEEeccCCCccccCcc
Confidence 334443332111 12233332 22222222222 455555543211
Q ss_pred -----C------------ChH-----HHHHHHHHc----cH---HHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1320 -----N------------DDL-----KIWSVLEKC----HV---KEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1320 -----~------------~d~-----ei~~aL~~~----~L---~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
+ +-. .+.++++-. ++ .+.++.+||+. .++.....||||||||+.|||+|+
T Consensus 767 C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~ 846 (943)
T PRK00349 767 CKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELS 846 (943)
T ss_pred ccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHh
Confidence 0 111 122222221 11 12333448875 467777899999999999999999
Q ss_pred cCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCEEEEEeccchhh
Q 000521 1370 KSS---KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 r~~---~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl------~~G~vvE~~~~~~~~ 1439 (1446)
++| +++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|..+.
T Consensus 847 ~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 847 KRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred cCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999 9999999999999999999999998764 588999999999999999999999 799999999987654
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=307.34 Aligned_cols=221 Identities=23% Similarity=0.340 Sum_probs=189.9
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcc
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGR 1295 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~ 1295 (1446)
+.+..+|+..+|.. .+|+++|||+|++||.||+.||+||||||.+.++.|+..|++|+|.+||.||+.+|.+.- |--
T Consensus 3 ~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 3 STLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred cEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 45788999999964 479999999999999999999999999999999999999999999999999999999863 445
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
|+|+||||.+|.+ ||+|||..--+..+.+.+.+-++..+.+.++.+.+...-...|..||||||+|+-|||||..+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence 9999999999987 999998644333222233344454556666666777777778889999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCch-hHhhcCEEEEEeCCEEEEEeccchhh
Q 000521 1375 LCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRIS-TVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~-ti~~~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
++||||.+++|+-+-..||+.|+... +|--|++.-|... |+.-|||.+++.+|+|...|+|....
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 99999999999999999999998764 4778888899865 67779999999999999999998654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=337.07 Aligned_cols=199 Identities=29% Similarity=0.391 Sum_probs=167.5
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.. .++|+|+||+|++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~-----~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 78 (274)
T PRK13647 4 IIEVEDLHFRYKDG-----TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 (274)
T ss_pred eEEEEEEEEEeCCC-----CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHH
Confidence 47899999998521 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCC--CCCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 -SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 -~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.++|++|+| .+++.|++||+.|+.. .+ ++++.++++.++|...... ....||||||||+
T Consensus 79 ~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgG~~qrv 147 (274)
T PRK13647 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDK-----------PPYHLSYGQKKRV 147 (274)
T ss_pred hhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------ChhhCCHHHHHHH
Confidence 389999998 5788899999998632 22 2345667777777543332 3358999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l 816 (1446)
+||||+..+|+++||||||++||+.+.+++++. +.....+|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEI-LDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999988876 3331234789999999999985 5999999999999999998654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=326.23 Aligned_cols=191 Identities=30% Similarity=0.405 Sum_probs=158.1
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------eEE
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 671 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~i~ 671 (1446)
+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03259 2 ELKGLSKTYGS------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIG 75 (213)
T ss_pred eeeeeEEEeCC------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEE
Confidence 57889998852 2359999999999999999999999999999999999999999999875 489
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000521 672 YVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1446)
Q Consensus 672 yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARa 743 (1446)
|++|+|.++. .|++||+.++.. .+. ++.++.++.+++.... .....+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLL-----------NRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHHHHH
Confidence 9999998875 599999987532 122 2345566666665433 33446899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 744 ly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREE-LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988876 332122 37899999999998765 9999999999998654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=328.51 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=168.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+. . ++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 76 (241)
T PRK14250 3 EIEFKEVSYSSFG---K---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76 (241)
T ss_pred eEEEEeEEEEeCC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhh
Confidence 4788999998842 2 359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCCCCccHHHHHhcCCCC---ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHH
Q 000521 669 -SIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~ti~~nI~~g~~~---~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARal 744 (1446)
.++|++|+|.+++.|++||+.++... +.++..+.++.++++.+. ......+||||||||++||||+
T Consensus 77 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 77 RKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hcEEEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHH
Confidence 38999999999989999999876432 233556667777664322 2345678999999999999999
Q ss_pred ccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 745 YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 745 y~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
+.+|+++||||||++||+.+.+.+.+. +..... .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEEL-IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 999999999999999999998888775 333122 37899999999999775 99999999999999999888753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=362.34 Aligned_cols=214 Identities=23% Similarity=0.370 Sum_probs=180.6
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHh-cce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR-GRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR-~~i 1296 (1446)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+....+ ..+
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 5999999999964 4699999999999999999999999999999999999999999999999999887776655 469
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1375 (1446)
+|+||++.+|++ |+++|+.+.....+ +..+ .+.+.++.+|++.........||||||||++|||||+++|++|
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASMQ-----KMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHHH-----HHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999998876 99999975432111 1111 1223344446655455555689999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1376 CLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1376 lLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||||++||+.+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|.+..+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 9999999999999999999998753 47899999999999865 8999999999999999887654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=331.02 Aligned_cols=198 Identities=25% Similarity=0.354 Sum_probs=163.3
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (236)
T cd03219 2 EVRGLTKRFGG------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75 (236)
T ss_pred eeeeeEEEECC------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhc
Confidence 57888998852 2359999999999999999999999999999999999999999998865
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCCC-----------------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKNYD-----------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~~~-----------------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 730 (1446)
.++|++|+|.+++. |++|||.++.... .++..+.++..+++ ...+....+|
T Consensus 76 ~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~L 144 (236)
T cd03219 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-----------DLADRPAGEL 144 (236)
T ss_pred CEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-----------chhhCChhhC
Confidence 38999999998876 9999998753210 11233334433332 2345667799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEE
Q 000521 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 809 (1446)
Q Consensus 731 SGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~ 809 (1446)
|||||||++||||+..+|++++|||||++||+.+.+++.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+
T Consensus 145 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 145 SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL-IRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999999999988876 33212257899999999999865 99999999999999
Q ss_pred ecChhHHHh
Q 000521 810 IGSSADLAV 818 (1446)
Q Consensus 810 ~g~~~~l~~ 818 (1446)
.|+++++..
T Consensus 224 ~~~~~~~~~ 232 (236)
T cd03219 224 EGTPDEVRN 232 (236)
T ss_pred ecCHHHhcc
Confidence 999888743
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=332.29 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=168.9
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~------ 668 (1446)
..++++|++++|.. . .+|+|+||++++||+++|+||||||||||+++|+|..+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGD---F---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECC---e---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 35889999999952 2 35999999999999999999999999999999999864 5899998865
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCC---C-C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 669 ---------SIAYVPQVPWILSGTIRDNILFGKN---Y-D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 669 ---------~i~yv~Q~p~l~~~ti~~nI~~g~~---~-~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
.++|++|++.+++.|++||+.++.. . + +++.++.++.+++...+. +..+....+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 151 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLS 151 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 3899999999998999999987521 1 1 234455566666643332 23456678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEEL-IHE-LKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988875 433 3456899999999999865 999999999999999
Q ss_pred cChhHHHh
Q 000521 811 GSSADLAV 818 (1446)
Q Consensus 811 g~~~~l~~ 818 (1446)
|+++++..
T Consensus 230 g~~~~~~~ 237 (253)
T PRK14242 230 GPTEQIFT 237 (253)
T ss_pred CCHHHHHc
Confidence 99888753
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=326.27 Aligned_cols=197 Identities=29% Similarity=0.370 Sum_probs=161.2
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------eEEEEc
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVP 674 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------~i~yv~ 674 (1446)
+++|+++.|+... ..+++|+|+||+|++|++++|+||||||||||+++|+|..+|++|+|.++| .++|++
T Consensus 2 ~~~~l~~~~~~~~--~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGG--GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCC--cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence 5788999885321 112469999999999999999999999999999999999999999999876 589999
Q ss_pred CCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHcc
Q 000521 675 QVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 675 Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~ 746 (1446)
|+|.+++ .|++||+.++.. .+ .++.++.++.++++.... ....+||||||||++||||++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHc
Confidence 9999887 699999986532 11 234556666666654333 3446899999999999999999
Q ss_pred CCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCEEEEEe--CCEEEEecCh
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMD--KGQVKWIGSS 813 (1446)
Q Consensus 747 ~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~--~G~i~~~g~~ 813 (1446)
+|+++||||||++||+.+.+.+++. +.... ..++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEE-LLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999998876 33211 237899999999998764 99999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=345.99 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=169.3
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------- 668 (1446)
...++++|+++.|.. ..+|+|+||++++||+++|+|||||||||||++|.|+.+|++|+|.++|
T Consensus 17 ~~~l~l~~v~~~~~~------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~ 90 (377)
T PRK11607 17 TPLLEIRNLTKSFDG------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90 (377)
T ss_pred CceEEEEeEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHH
Confidence 346899999999852 2359999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 669 -SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
.||||+|++-+|.. ||+|||.|+.. .+. ++..++++..++.... .....+|||||||||+
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVa 159 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVA 159 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 38999999999975 99999998742 222 2345556666664322 3445689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
|||||+.+|+++|||||||+||+...+.+.+.+..-....+.|+|+|||+.+.+. .||+|++|++|++++.|+++++..
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999988876532111123789999999999865 599999999999999999999865
Q ss_pred c
Q 000521 819 S 819 (1446)
Q Consensus 819 ~ 819 (1446)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 4
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=363.93 Aligned_cols=214 Identities=20% Similarity=0.326 Sum_probs=179.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i 1296 (1446)
.|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+.... |+++
T Consensus 5 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4899999999964 369999999999999999999999999999999999999999999999999988776553 4679
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC-------C---ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHH
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM-------N---DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~-------~---~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LA 1365 (1446)
+||||++.+|.. |+++|+..... . +.++..+ .+.+.++.+|++........+||||||||++||
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia 157 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRVGLKVDLDEKVANLSISHKQMLEIA 157 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccchhhCCHHHHHHHHHH
Confidence 999999998875 99999964311 0 1111111 123344444665444555568999999999999
Q ss_pred HHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
|||+++|+||||||||++||..+.+.+.+.|++.. +++|||+|||+++.+.+ ||+|++|++|++++.|.+..+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999999999998753 47899999999999875 899999999999999888765
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=329.12 Aligned_cols=194 Identities=26% Similarity=0.373 Sum_probs=161.2
Q ss_pred ccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC----CCceEEEcCeeCCCCChHhHhcceEEEeCCCC-CC-C-
Q 000521 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI----CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LF-E- 1307 (1446)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~----~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lF-~- 1307 (1446)
+|+|+||+|++||++||+|++|||||||+++|.|+++| ++|+|.+||.++... +..+++++|+||+|. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 58999999999999999999999999999999999999 899999999998754 233468999999995 34 3
Q ss_pred CcHHHhcCCC----CCCC---hHHHHHHHHHccHHHHHHhCCCc---hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 000521 1308 GSLRDNLDPF----HMND---DLKIWSVLEKCHVKEEVEAVGLE---TFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377 (1446)
Q Consensus 1308 gTIR~NLdp~----~~~~---d~ei~~aL~~~~L~~~i~~lgLd---t~v~e~G~~LSgGQrQrl~LARALLr~~~ILlL 1377 (1446)
-|+++|+... +... ++++.++++ .+|++ +.......+||+|||||++||||++++|+||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALE---------AVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHH---------HcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4888887321 1111 122333333 34554 445666778999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchhh
Q 000521 1378 DECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1378 DEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~~ 1439 (1446)
||||++||.++.+.+.+.|++..+ ++|||+++|+++.+.. ||+|++|++|++++.|.+..++
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999987643 7899999999999964 9999999999999999988765
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=362.46 Aligned_cols=214 Identities=19% Similarity=0.304 Sum_probs=178.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHh-Hhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD-LRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~-lR~~i 1296 (1446)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+++
T Consensus 4 ~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999997665544 46789
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
+|+||++.+|.. |+++|+.+... .+..+..+ ...+.++.+|++........+||||||||++|||||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 156 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVL 156 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999999988875 99999975321 11111111 123344445665544455567999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+.+|++|||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 157 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 157 SFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred hcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999999998753 47899999999999865 899999999999999887754
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=325.98 Aligned_cols=197 Identities=21% Similarity=0.276 Sum_probs=162.9
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------e
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~ 669 (1446)
++++|++++|.. .++|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVKKYGD------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEEEECC------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 357888988852 2359999999999999999999999999999999999999999999876 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
++|++|++.+++. |++||+.++.. .+ +++.++.++.++++... .....+||||||||++||
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr~~la 143 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAA-----------DRLVKTYSGGMRRRLEIA 143 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHH
Confidence 8999999988865 99999986421 22 23455666777665432 233468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
||++.+|+++||||||++||+.+.+.+.+. +.....+ ++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEY-IEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999988875 3321223 7899999999999875 999999999999998887654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=330.46 Aligned_cols=202 Identities=27% Similarity=0.375 Sum_probs=167.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC-----CcEEEEeC--------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG-------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~-----~G~i~~~~-------- 668 (1446)
++++|++++|.. . .+++|+||+|++||+++|+|+||||||||+++|.|.++|+ +|+|.++|
T Consensus 2 l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGE---K---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECC---e---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 678999999853 1 3599999999999999999999999999999999999998 99998864
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCC----CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 -------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 -------~i~yv~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.++|++|++++++.|++||+.++.. .+. ++.+++++..++..++. ........+||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 148 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGG 148 (247)
T ss_pred chHHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHH
Confidence 3899999999999999999987532 111 23445555666653221 1235567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
||||++||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL-IQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988775 433 3345899999999998765 99999999999999999
Q ss_pred hhHHHh
Q 000521 813 SADLAV 818 (1446)
Q Consensus 813 ~~~l~~ 818 (1446)
++++..
T Consensus 227 ~~~~~~ 232 (247)
T TIGR00972 227 TEQIFT 232 (247)
T ss_pred HHHHHh
Confidence 888753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=330.30 Aligned_cols=204 Identities=26% Similarity=0.335 Sum_probs=168.3
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------ 668 (1446)
..++++|+++.|.. . .+|+|+||++++||+++|+|+||||||||+++|.|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 79 (254)
T PRK14273 6 AIIETENLNLFYTD---F---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN 79 (254)
T ss_pred ceEEEeeeEEEeCC---c---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc
Confidence 46899999999852 1 359999999999999999999999999999999999987 489998754
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 669 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 669 ---------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
.++|++|+|.+++.|++|||.++... +. ++..++++.+++...+. .....+..+||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 152 (254)
T PRK14273 80 NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLS 152 (254)
T ss_pred cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCC
Confidence 38999999999989999999876421 21 23344555555532221 12344678999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
||||||++||||++.+|+++||||||++||+.+.+.+++. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~ 230 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL-IIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEE 230 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988875 333 3456899999999999765 999999999999999
Q ss_pred cChhHHHh
Q 000521 811 GSSADLAV 818 (1446)
Q Consensus 811 g~~~~l~~ 818 (1446)
|+++++..
T Consensus 231 g~~~~~~~ 238 (254)
T PRK14273 231 SSTDELFF 238 (254)
T ss_pred CCHHHHHh
Confidence 99988754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=326.15 Aligned_cols=190 Identities=25% Similarity=0.402 Sum_probs=157.2
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|+.. . +++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSKAYPGG-H---QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred eEEEEEEEEecCC-C---eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 5789999998532 1 2359999999999999999999999999999999999999999998875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|.++. .|++||+.++.. .+ +++..++++.+++..... ....+||||||||
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qr 146 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-----------ALPMQLSGGEQQR 146 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999999886 599999987521 11 234566677776654332 3345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEE
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 807 (1446)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++
T Consensus 147 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 147 VAIARAIVHKPPLLLADEPTGNLDPELSRDIMRL-FEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988876 33212347899999999999875 999999999974
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=322.06 Aligned_cols=188 Identities=27% Similarity=0.418 Sum_probs=157.3
Q ss_pred EEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------eEEEE
Q 000521 604 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------SIAYV 673 (1446)
Q Consensus 604 ~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------~i~yv 673 (1446)
++|+++.|+.. .++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~l~~~~~~~-----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG-----TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc-----CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEE
Confidence 46778887531 2359999999999999999999999999999999999999999999876 48999
Q ss_pred cCCC--CCCCccHHHHHhcCCCC---ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCC
Q 000521 674 PQVP--WILSGTIRDNILFGKNY---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748 (1446)
Q Consensus 674 ~Q~p--~l~~~ti~~nI~~g~~~---~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~ 748 (1446)
+|+| .+++.|++||+.++... ++++.+++++.+++..... ....+||||||||++||||+..+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-----------RHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-----------CCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 46778999999876432 2346677888887764333 233589999999999999999999
Q ss_pred CEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEE
Q 000521 749 DIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 808 (1446)
Q Consensus 749 ~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~ 808 (1446)
++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGEL-IRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999888775 43312457899999999999875 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=345.13 Aligned_cols=214 Identities=27% Similarity=0.438 Sum_probs=176.3
Q ss_pred cEEEEEEEEEecCCCC--cccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC----CceEEEcCeeCCCCChHh
Q 000521 1218 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC----GGQILVDGLNIINTPVRD 1291 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~----~G~I~IDG~di~~i~~~~ 1291 (1446)
-++++|++..|..... .+++||||+|.+||.+||||.|||||||+.++|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999975433 5999999999999999999999999999999999999987 899999999999988866
Q ss_pred Hh----cceEEEeCCCC-CCCC--cHHHhcC----CCCCCC----hHHHHHHHHHccHHHHHHhCCCchhhhc--CCCCC
Q 000521 1292 LR----GRFAVVPQSPF-LFEG--SLRDNLD----PFHMND----DLKIWSVLEKCHVKEEVEAVGLETFVKE--SGISF 1354 (1446)
Q Consensus 1292 lR----~~i~~VpQdp~-lF~g--TIR~NLd----p~~~~~----d~ei~~aL~~~~L~~~i~~lgLdt~v~e--~G~~L 1354 (1446)
.| ++|++|||||+ .++- ||.+-+. .....+ .++..+.|+.+ |+...... -...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V---------gl~~~~~~~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV---------GLPDPERRDRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc---------CCCChhhhccCCccc
Confidence 54 57999999997 4443 5544432 111111 11222333333 55544433 56789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEE
Q 000521 1355 SVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVC 1431 (1446)
Q Consensus 1355 SgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE 1431 (1446)
|||||||+.||+||..+|++||+||||.+||..|.+.|.+.|++.. .+.++|+|||++..+.+ ||||+||.+|++||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765 58999999999999976 89999999999999
Q ss_pred Eeccchhhh
Q 000521 1432 ISFICRYFI 1440 (1446)
Q Consensus 1432 ~~~~~~~~~ 1440 (1446)
.|.+..+|.
T Consensus 236 ~G~~~~i~~ 244 (539)
T COG1123 236 TGPTEEILS 244 (539)
T ss_pred ecCHHHHHh
Confidence 999987763
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=319.61 Aligned_cols=193 Identities=20% Similarity=0.252 Sum_probs=161.7
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++++
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 689999999964 369999999999999999999999999999999999999999999999999875 34577899999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCC--CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHM--NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVL 1375 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~--~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~IL 1375 (1446)
+||++.+++ .|+++|+..... ..+.++.+++ +.++++...+....+||+|||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l---------~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELC---------RLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHH---------HHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999999875 699999864321 1122333333 3334443333444579999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhhcCEEEE
Q 000521 1376 CLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1423 (1446)
Q Consensus 1376 lLDEaTS~lD~~Te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~~DrIlv 1423 (1446)
||||||++||..+.+.+.+.|++. -+++|+|++||+.+.+.+||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999875 358899999999999999986543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=343.20 Aligned_cols=204 Identities=28% Similarity=0.366 Sum_probs=167.4
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++++|+... ...++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~--~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 2 IELKNISKVFPQGG--RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred EEEEeEEEEeCCCC--CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 57899999996311 112469999999999999999999999999999999999999999998875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.|+|++|+|.+++ .|++||+.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qR 148 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQR 148 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHH
Confidence 3999999999886 599999987532 222 233445555555432 234557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
++||||++.+|+++||||||++||+.+.+.+.+. +.... .+|+|+|++||+++.+.. ||+|++|++|++++.|+.++
T Consensus 149 v~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~-L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~ 227 (343)
T PRK11153 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSE 227 (343)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999988876 33211 237899999999999875 99999999999999999998
Q ss_pred HHhc
Q 000521 816 LAVS 819 (1446)
Q Consensus 816 l~~~ 819 (1446)
+...
T Consensus 228 ~~~~ 231 (343)
T PRK11153 228 VFSH 231 (343)
T ss_pred HHhC
Confidence 8643
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.13 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=162.8
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|.. . .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~--~---~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (243)
T TIGR02315 2 LEVENLSKVYPN--G---KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76 (243)
T ss_pred eEEEeeeeecCC--C---cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHH
Confidence 568899998851 1 2359999999999999999999999999999999999999999998875
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCCC---------------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKNY---------------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~~---------------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 729 (1446)
.++|++|++.++. .|++||+.++... +.++..++++.+++... ......+
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~ 145 (243)
T TIGR02315 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-----------AYQRADQ 145 (243)
T ss_pred HHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-----------hcCCccc
Confidence 2899999998886 5999999875310 11234445555555432 3446678
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEE
Q 000521 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQV 807 (1446)
Q Consensus 730 LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i 807 (1446)
||||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+. .||++++|++|++
T Consensus 146 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 224 (243)
T TIGR02315 146 LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDY-LKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224 (243)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999999999999999999999999999999999888775 333122 3789999999999985 4999999999999
Q ss_pred EEecChhHH
Q 000521 808 KWIGSSADL 816 (1446)
Q Consensus 808 ~~~g~~~~l 816 (1446)
++.|+++++
T Consensus 225 ~~~~~~~~~ 233 (243)
T TIGR02315 225 VFDGAPSEL 233 (243)
T ss_pred EecCCHHHh
Confidence 999988775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=361.65 Aligned_cols=210 Identities=24% Similarity=0.377 Sum_probs=175.5
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-HhHhcce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRF 1296 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i 1296 (1446)
.|+++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+. +.+|+++
T Consensus 4 ~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 4899999999964 369999999999999999999999999999999999999999999999999976543 4567899
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
+|+||+|.+|++ |+++|+..... .+..+..+ .+.+.++.+|++........+||||||||++||||++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~ 156 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALA 156 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHH
Confidence 999999998876 99999975321 11111111 1234445556654445555689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEec
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISF 1434 (1446)
Q Consensus 1370 r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~ 1434 (1446)
++|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.+.
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 157 RNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred hCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999999998753 47899999999999865 89999999999987554
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=334.24 Aligned_cols=186 Identities=30% Similarity=0.432 Sum_probs=156.5
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------------eEEEEcCCCCCCC-c
Q 000521 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-G 682 (1446)
Q Consensus 621 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------------~i~yv~Q~p~l~~-~ 682 (1446)
.+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++| .++|++|+|.+++ .
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 117 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHR 117 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCC
Confidence 359999999999999999999999999999999999999999998865 3899999999885 5
Q ss_pred cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000521 683 TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755 (1446)
Q Consensus 683 ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDe 755 (1446)
|++||+.++.. ++ +++..++++.+++...+. ....+||||||||++||||++.+|+++||||
T Consensus 118 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrv~lAral~~~p~illLDE 186 (269)
T cd03294 118 TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-----------KYPDELSGGMQQRVGLARALAVDPDILLMDE 186 (269)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987421 22 234556677777654443 3345899999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 756 VLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 756 p~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||++||+.+.+.+.+. +.... ..|+|+|++||+++.+.. ||++++|++|++.+.|+++++..
T Consensus 187 Pt~~LD~~~~~~l~~~-l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 187 AFSALDPLIRREMQDE-LLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999988876 32211 237899999999998764 99999999999999999988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.63 Aligned_cols=202 Identities=26% Similarity=0.399 Sum_probs=170.4
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.. . +++|+|+||+|++||+++|+||||||||||+++|.|..+|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-~---~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISFRYPDA-A---TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEEEeCCC-C---ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 58899999999532 1 2369999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 -SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 -~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.++|++|+| .+++.|++|||.++.. .++ ++..++++.++|+..+.. ....||||||||+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qrv 149 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNR-----------EPHRLSGGQKQRV 149 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhC-----------CcccCCHHHHHHH
Confidence 389999998 4667899999987532 222 345667777777655443 3458999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
+||||++.+|+++||||||++||+.+.+.+++. +..... .+.|+|++||+++.+..||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 150 AIAGVLALQPDIIILDEATSMLDPRGRREVLET-VRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999998876 333122 378999999999998889999999999999999988875
Q ss_pred h
Q 000521 818 V 818 (1446)
Q Consensus 818 ~ 818 (1446)
.
T Consensus 229 ~ 229 (279)
T PRK13635 229 K 229 (279)
T ss_pred c
Confidence 4
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=329.57 Aligned_cols=205 Identities=25% Similarity=0.331 Sum_probs=170.3
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC-----
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~----- 668 (1446)
...++++|+++.|+. . ++|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---F---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CceEEEEEEEEEeCC---e---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 356889999999852 2 35999999999999999999999999999999999986 5899998764
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCC----CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000521 669 ----------SIAYVPQVPWILSGTIRDNILFGKN----YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1446)
Q Consensus 669 ----------~i~yv~Q~p~l~~~ti~~nI~~g~~----~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 730 (1446)
.++|++|+|.+++.|++||+.++.. .++ ++.+++++..++..++. +..++...+|
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 157 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSL 157 (260)
T ss_pred cccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCC
Confidence 3899999999988999999987532 222 33455666666543332 2345677899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEE
Q 000521 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 809 (1446)
Q Consensus 731 SGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~ 809 (1446)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL-ITE-LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988876 333 3456899999999999865 99999999999999
Q ss_pred ecChhHHHh
Q 000521 810 IGSSADLAV 818 (1446)
Q Consensus 810 ~g~~~~l~~ 818 (1446)
.|+.+++..
T Consensus 236 ~g~~~~~~~ 244 (260)
T PRK10744 236 FGNTDTIFT 244 (260)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=332.53 Aligned_cols=200 Identities=27% Similarity=0.413 Sum_probs=166.8
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++++|+.. ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (274)
T PRK13644 2 IRLENVSYSYPDG-----TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIR 76 (274)
T ss_pred EEEEEEEEEcCCC-----CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHH
Confidence 5788999998521 2359999999999999999999999999999999999999999998875
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 -~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.++|++|+|. +++.|++|||.++.. .+. ++.+++++.++++.. .......||||||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv 145 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCV 145 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHH
Confidence 3899999986 567899999987632 222 334555666666433 2345568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
+||||++.+|+++||||||++||+.+.+.+++. +.....+|.|+|++||+++.++.||+|++|++|++++.|+.+++..
T Consensus 146 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 146 ALAGILTMEPECLIFDEVTSMLDPDSGIAVLER-IKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999988876 3321234789999999999998899999999999999999888754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=328.02 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=161.9
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|+++.|... .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (241)
T cd03256 2 EVENLSKTYPNG-----KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76 (241)
T ss_pred EEeeEEEecCCc-----cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHH
Confidence 578888888531 2359999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCCCCC-ccHHHHHhcCCC------------CC---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000521 669 --SIAYVPQVPWILS-GTIRDNILFGKN------------YD---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~-~ti~~nI~~g~~------------~~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 730 (1446)
.++|++|++.++. .|++||+.++.. .. .++..+.++..++.. .....+.+|
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~L 145 (241)
T cd03256 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLD-----------KAYQRADQL 145 (241)
T ss_pred HhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChh-----------hhCCCcccC
Confidence 3899999998876 699999986531 01 122334444444432 234567799
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEE
Q 000521 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVK 808 (1446)
Q Consensus 731 SGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~ 808 (1446)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+. .||++++|++|+++
T Consensus 146 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~ 224 (241)
T cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL-LKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999988876 332122 3789999999999988 59999999999999
Q ss_pred EecChhHH
Q 000521 809 WIGSSADL 816 (1446)
Q Consensus 809 ~~g~~~~l 816 (1446)
+.|+++++
T Consensus 225 ~~~~~~~~ 232 (241)
T cd03256 225 FDGPPAEL 232 (241)
T ss_pred eecCHHHh
Confidence 99998876
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=323.39 Aligned_cols=197 Identities=26% Similarity=0.439 Sum_probs=163.9
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------eE
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SI 670 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~i 670 (1446)
+++|+++.|+.. . +++|+|+||++++||+++|+||||||||||+++|.|.++|++|+|.++| .+
T Consensus 2 ~~~~l~~~~~~~-~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 77 (220)
T cd03263 2 QIRNLTKTYKKG-T---KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSL 77 (220)
T ss_pred EEEeeEEEeCCC-C---ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhE
Confidence 578899988532 1 2369999999999999999999999999999999999999999998876 38
Q ss_pred EEEcCCCCCC-CccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000521 671 AYVPQVPWIL-SGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 671 ~yv~Q~p~l~-~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lAR 742 (1446)
+|++|+|.++ +.|++||+.++.. .+ .++.+++++.+++.... .....+||||||||++|||
T Consensus 78 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~ 146 (220)
T cd03263 78 GYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-----------NKRARTLSGGMKRKLSLAI 146 (220)
T ss_pred EEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hChhhhCCHHHHHHHHHHH
Confidence 9999999888 5699999986421 12 13455666766664322 3344689999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 743 aly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
|++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDL-ILE-VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999988875 333 3446899999999999865 999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=320.25 Aligned_cols=195 Identities=24% Similarity=0.310 Sum_probs=163.9
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|++ .++++|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 5999999999964 3699999999999999999999999999999999999999999999999998752 3466799
Q ss_pred EEeCCCCCCCC-cHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
|+||+|.++++ |+++|+.... ...++.+.++++.. |++.........||+|||||++||||++++|
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV---------GLAGYEDTLVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc---------CChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 9999985421 11222333444444 4443334445579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeC
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDH 1426 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~ 1426 (1446)
++|+|||||++||.++.+.+.+.+++.. +++|+|++||+++.+.+ ||++++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999997653 47899999999999865 799999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=319.90 Aligned_cols=191 Identities=24% Similarity=0.328 Sum_probs=160.9
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------eEE
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 671 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~i~ 671 (1446)
+++|+++.|+. .++|+|+||++++|++++|+||||||||||+++|+|..+|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~ 75 (208)
T cd03268 2 KTNDLTKTYGK------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75 (208)
T ss_pred EEEEEEEEECC------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEE
Confidence 57899998842 2359999999999999999999999999999999999999999999976 389
Q ss_pred EEcCCCCCC-CccHHHHHhcCC---CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccC
Q 000521 672 YVPQVPWIL-SGTIRDNILFGK---NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHG 747 (1446)
Q Consensus 672 yv~Q~p~l~-~~ti~~nI~~g~---~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~ 747 (1446)
||+|++.++ +.|++||+.++. ..++++.+++++..+++... .....+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999877 469999997653 22455666777777775433 334568999999999999999999
Q ss_pred CCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 748 SDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 748 ~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELREL-ILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999988875 33212257899999999999865 9999999999998654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=336.65 Aligned_cols=202 Identities=25% Similarity=0.382 Sum_probs=167.9
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|.. ..+|+|+||+|++||+++++||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~i~i~~l~k~~~~------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEKRYGD------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEEEECC------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 46899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhc-CCCC--Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 669 -SIAYVPQVPWILS-GTIRDNILF-GKNY--DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~-~ti~~nI~~-g~~~--~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
.||||||+|.++. .|++||+.+ +..+ +. ++.+++++.+++.... .....+||||||||++
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 148 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKA-----------DAKVGELSGGMKRRLT 148 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCchhhCCHHHHHHHH
Confidence 4999999999885 599999975 3211 21 2334555555554321 2334589999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||||+.++|++++|||||++||+...+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 149 la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~-l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTTGLDPQARHLMWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988876 43312347899999999999876 99999999999999999999865
Q ss_pred c
Q 000521 819 S 819 (1446)
Q Consensus 819 ~ 819 (1446)
.
T Consensus 228 ~ 228 (306)
T PRK13537 228 S 228 (306)
T ss_pred c
Confidence 4
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=318.08 Aligned_cols=336 Identities=22% Similarity=0.301 Sum_probs=244.6
Q ss_pred HHhhcchHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHhhcCCCCcCcc
Q 000521 1078 TETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMA----VIGSRGNLPATFS 1153 (1446)
Q Consensus 1078 ~Etl~Gl~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~wl~~~l~~~~~~~~~~~~~~~----v~~~~~~~~~~~~ 1153 (1446)
++...+...|--|+.++.......+..++.-.......+...|+.+..+.+.- +..++..++ ++..+ .....
T Consensus 269 ~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Y-lg~ilsy~vi~~p~Fs~h---~y~~~ 344 (659)
T KOG0060|consen 269 SRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDY-LGGILSYVVIAIPFFSGH---VYDDL 344 (659)
T ss_pred eeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhheeeEEeeeeeccc---ccCCc
Confidence 45556777888888877666655555555555555566777888876665542 111111111 11111 12223
Q ss_pred cHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcC----C---c------cccc----c-CCCC--
Q 000521 1154 TPGLV-GLAL---SYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV----P---Q------EELC----G-YQSL-- 1209 (1446)
Q Consensus 1154 ~~g~v-gl~l---~~~~~~~~~l~~~i~~~~~~e~~~~sv~Ri~~~~~~----~---~------e~~~----~-~~~~-- 1209 (1446)
++... +..- .+.+.+.+.+..++....++..--+-..||-++.+. . + |+.. . ...+
T Consensus 345 s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~ 424 (659)
T KOG0060|consen 345 SPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGS 424 (659)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCC
Confidence 34332 2222 122333444555555555555556667888877632 0 0 1100 0 0111
Q ss_pred CCCCCCCccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh
Q 000521 1210 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289 (1446)
Q Consensus 1210 ~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~ 1289 (1446)
+..||.+..|+|++|++.=|.+.+...+|+||+|+.|+.+-|+|+||||||||++.|-|+.+..+|++.--...-
T Consensus 425 ~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----- 499 (659)
T KOG0060|consen 425 GKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----- 499 (659)
T ss_pred cccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence 345788889999999999876666677889999999999999999999999999999999999999987532110
Q ss_pred HhHhcceEEEeCCCCCCCCcHHHhcC-CC-------CCCChHHHHHHHHHccHHHHHHhC-CCchhhh-cCCCCCChhHH
Q 000521 1290 RDLRGRFAVVPQSPFLFEGSLRDNLD-PF-------HMNDDLKIWSVLEKCHVKEEVEAV-GLETFVK-ESGISFSVGQR 1359 (1446)
Q Consensus 1290 ~~lR~~i~~VpQdp~lF~gTIR~NLd-p~-------~~~~d~ei~~aL~~~~L~~~i~~l-gLdt~v~-e~G~~LSgGQr 1359 (1446)
-+.+-++||.|++-.||+|+-+- |. +..+|++|.+.|+.++|.+.++.. |+|+++. +....||+||+
T Consensus 500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 04589999999999999999974 41 235799999999999999999888 9997665 55678999999
Q ss_pred HHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhhcCEEEEEeCC
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHG 1427 (1446)
Q Consensus 1360 Qrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~~DrIlvl~~G 1427 (1446)
||+|+||.++.+|++-+|||+|||||.+.|..+.+.+++. +-|.|.|.||-+.-+.-|.++-|+.+
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999999885 89999999999988889999999864
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=324.96 Aligned_cols=198 Identities=25% Similarity=0.341 Sum_probs=162.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.... ..++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 5 LLQCDNLCKRYQEGSV--QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred eEEEEeEEEEcCCCCc--ceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 4789999999964211 12469999999999999999999999999999999999999999998875
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCC---CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 -----~i~yv~Q~p~l~~~-ti~~nI~~g~---~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.++|++|+|.+++. |++||+.++. ..++ ++..++++.+++... ......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~ 151 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR-----------ANHRPSELSGGER 151 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHH
Confidence 38999999988865 9999998642 1222 234556666655432 3445678999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhhCCEEEEEeCCEEEEecC
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~ 812 (1446)
||++||||++.+|+++||||||++||+.+.+.+.+. +.... .+|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 152 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 152 QRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL-LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999988875 33211 24789999999999998889999999999988765
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=325.10 Aligned_cols=199 Identities=25% Similarity=0.361 Sum_probs=164.5
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------e
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~ 669 (1446)
++++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 2 LEVAGLSFAYGA------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred EEEEeeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 568899998852 2359999999999999999999999999999999999999999998876 3
Q ss_pred EEEEcCCCCCC-CccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWIL-SGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~-~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
++|++|++.++ +.|++||+.++.. .+++ +..+.++..++. ...+....+||||||||++||
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-----------ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhcCChhhCCHHHHHHHHHH
Confidence 89999999874 6799999986532 2221 233344444443 234556679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHHh
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 145 ral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 145 RALLHRPALLLLDEPTVGLDPASRAAIVAH-VRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHhcCCCEEEEcCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 999999999999999999999999998876 33212 24789999999999988899999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.65 Aligned_cols=191 Identities=26% Similarity=0.369 Sum_probs=156.4
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|++++|+.... ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~~~~--~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 2 ELKNLSKTYGGGGE--KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred eEeeeEEEecCCCc--ceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 57889998853210 12469999999999999999999999999999999999999999998764
Q ss_pred ---eEEEEcCCCCCCCc-cHHHHHhcCCCC---C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~~-ti~~nI~~g~~~---~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|.++.. |++||+.++..+ + +++.+++++..+++.. ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDR-----------LNHYPSELSGGQQQR 148 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhcChhhcCHHHHHH
Confidence 38999999998876 999999875432 1 2344555666555432 234556899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEE
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQV 807 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i 807 (1446)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMEL-LRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999988875 333122 37899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=325.80 Aligned_cols=197 Identities=29% Similarity=0.365 Sum_probs=164.9
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------eEE
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 671 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------~i~ 671 (1446)
..++++|++++|.. .++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++
T Consensus 11 ~~l~i~~l~~~~~~------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGE------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECC------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 45899999999852 2359999999999999999999999999999999999999999998876 489
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCCC-ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCC
Q 000521 672 YVPQVPWILS-GTIRDNILFGKNY-DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 749 (1446)
Q Consensus 672 yv~Q~p~l~~-~ti~~nI~~g~~~-~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~ 749 (1446)
|++|+|.+++ .|++||+.++... .+++..+.++..++... ......+||||||||++||||+..+|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998886 6999999876321 23455666666666533 244567899999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChh
Q 000521 750 IYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 750 illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~ 814 (1446)
++||||||++||+.+.+.+.+. +.... ..++|+|++||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDL-IESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999988775 33211 237899999999998754 9999999999999877643
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=322.53 Aligned_cols=198 Identities=27% Similarity=0.413 Sum_probs=161.2
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|+++.|+. . ++++|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (222)
T cd03224 2 EVENLNAGYGK---S---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARA 75 (222)
T ss_pred EEeeEEeecCC---e---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhc
Confidence 57888988852 2 359999999999999999999999999999999999999999998865
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCCC-h----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKNYD-P----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~~~-~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lAR 742 (1446)
.++|++|++.++.. |++||+.++.... . ++.+++++... .+ ......+..+||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~------~l----~~~~~~~~~~LS~G~~qrv~lar 145 (222)
T cd03224 76 GIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP------RL----KERRKQLAGTLSGGEQQMLAIAR 145 (222)
T ss_pred CeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH------hh----hhhhhCchhhCCHHHHHHHHHHH
Confidence 38999999988876 9999998764321 1 12223333321 11 12235567789999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHH
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 743 aly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
|+..+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 146 ALMSRPKLLLLDEPSEGLAPKIVEEIFEA-IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHhcCCCEEEECCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999988876 33312257899999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=332.79 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=167.8
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|..... ...++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~i~~~~l~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 80 (287)
T PRK13641 2 SIKFENVDYIYSPGTP-MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL 80 (287)
T ss_pred EEEEEEEEEEcCCCCC-ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH
Confidence 4678999999963211 012469999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEcCCC--CCCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 -----~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.++|++|+| .+++.|++|||.++.. .+. ++.+++++.++++.+. ......+|||||
T Consensus 81 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq 150 (287)
T PRK13641 81 KKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHH
Confidence 379999998 5777899999987531 222 2345556666664222 234567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecCh
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~ 813 (1446)
|||++||||+..+|+++||||||++||+...+.+.+. +.....+|.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~-l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQL-FKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998888775 4331235789999999999876 4999999999999999999
Q ss_pred hHHHh
Q 000521 814 ADLAV 818 (1446)
Q Consensus 814 ~~l~~ 818 (1446)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 88754
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=320.97 Aligned_cols=191 Identities=30% Similarity=0.422 Sum_probs=157.4
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------eEE
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIA 671 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~i~ 671 (1446)
+++|+++.|+. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 ~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~ 75 (213)
T cd03301 2 ELENVTKRFGN------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIA 75 (213)
T ss_pred EEEeeEEEECC------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEE
Confidence 57889998853 2359999999999999999999999999999999999999999999875 389
Q ss_pred EEcCCCCCCC-ccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000521 672 YVPQVPWILS-GTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1446)
Q Consensus 672 yv~Q~p~l~~-~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARa 743 (1446)
|++|++.+++ .|++||+.++.. .+++ +..+.++..+++.. ......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHHH
Confidence 9999999885 599999987522 2222 33444555555432 344556899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 744 ly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAE-LKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999988876 332122 37899999999998765 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=323.74 Aligned_cols=202 Identities=28% Similarity=0.402 Sum_probs=164.6
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|..... ..++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 i~~~~l~~~~~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (233)
T cd03258 2 IELKNVSKVFGDTGG--KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRK 79 (233)
T ss_pred eEEecceEEccCCCC--ceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 578899999853210 12469999999999999999999999999999999999999999998864
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|.++. .|++||+.++.. .+. ++..+.++..++... ......+||||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 148 (233)
T cd03258 80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQR 148 (233)
T ss_pred HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHH
Confidence 3899999999986 599999987532 222 233444555555432 234557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
++||||+..+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (233)
T cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILAL-LRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227 (233)
T ss_pred HHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999988876 332122 37899999999999865 99999999999999999887
Q ss_pred HH
Q 000521 816 LA 817 (1446)
Q Consensus 816 l~ 817 (1446)
+.
T Consensus 228 ~~ 229 (233)
T cd03258 228 VF 229 (233)
T ss_pred Hh
Confidence 64
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.84 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=126.1
Q ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEEEeCCCC-CCCCcHHHhcCCCC--
Q 000521 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNLDPFH-- 1318 (1446)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~-lF~gTIR~NLdp~~-- 1318 (1446)
+|..||.+|++||+|-||||++++|.|.++|++|+ ..+ -+++|=||--. -|+|||++-|.--.
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~gtV~~~l~~~~~~ 428 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYDGTVEDLLRSAIRS 428 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCCCcHHHHHHHhhhh
Confidence 34567899999999999999999999999999998 222 25788888543 38999988763111
Q ss_pred CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 000521 1319 MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS 1398 (1446)
Q Consensus 1319 ~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~ 1398 (1446)
.+.+.-.+ .+.++.+.|+-.+...-.+|||||.||+++|-||.|++++++||||++.||.+-.-.+-++||+
T Consensus 429 ~~~~s~~~--------~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 429 AFGSSYFK--------TEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred hcccchhH--------HhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 01111111 1223334555556655667999999999999999999999999999999999998888888887
Q ss_pred hc--CCcEEEEeccCchhHhh-cCEEEEEe
Q 000521 1399 EC--KGMTVITIAHRISTVLN-MDEILILD 1425 (1446)
Q Consensus 1399 ~~--~~~TvI~IaHrl~ti~~-~DrIlvl~ 1425 (1446)
.. .++|.++|-|++-.+.. +||++|.+
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 53 58899999999988764 79999986
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=325.78 Aligned_cols=200 Identities=25% Similarity=0.388 Sum_probs=163.3
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------e
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------S 669 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------~ 669 (1446)
+++|++++|+.. ..+|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 2 ~~~~l~~~~~~~-----~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (242)
T cd03295 2 EFENVTKRYGGG-----KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRK 76 (242)
T ss_pred EEEEEEEEeCCc-----ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcc
Confidence 578899988531 2359999999999999999999999999999999999999999998875 4
Q ss_pred EEEEcCCCCCCC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
++|++|+|.++. .|++||+.++.. .+. ++..++++..++.. .......+.+||||||||++||
T Consensus 77 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 77 IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred eEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHH
Confidence 899999999886 599999987532 221 23344455554432 0123456679999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHH
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
||++.+|++++|||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ral~~~p~llllDEPt~~LD~~~~~~l~~~-L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 148 RALAADPPLLLMDEPFGALDPITRDQLQEE-FKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999998888776 332122 37899999999998654 9999999999999999888764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=358.91 Aligned_cols=211 Identities=24% Similarity=0.352 Sum_probs=176.5
Q ss_pred EEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCCh-HhHhcceEEE
Q 000521 1221 FQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-RDLRGRFAVV 1299 (1446)
Q Consensus 1221 f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-~~lR~~i~~V 1299 (1446)
++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++|+
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 3689999964 369999999999999999999999999999999999999999999999999976654 4457889999
Q ss_pred eCCCCCCCC-cHHHhcCCCCC------CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1300 PQSPFLFEG-SLRDNLDPFHM------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1300 pQdp~lF~g-TIR~NLdp~~~------~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
||++.+|.. |+++|+..... .+.++.++ ...+.++.+|++........+||||||||++|||||+++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999987764 99999975321 12222221 1234455557766556666789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
++|||||||++||.++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|.+..+
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999998753 47899999999998865 899999999999999887543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=328.54 Aligned_cols=206 Identities=25% Similarity=0.327 Sum_probs=171.9
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC----
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG---- 668 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~---- 668 (1446)
....++++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~ 90 (267)
T PRK14237 17 EEIALSTKDLHVYYGK------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDIN 90 (267)
T ss_pred CCeEEEEeeEEEEECC------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcc
Confidence 4457899999999842 235999999999999999999999999999999999996 5899998765
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCC----CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000521 669 -----------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1446)
Q Consensus 669 -----------~i~yv~Q~p~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 729 (1446)
.++|++|+|.+++.|++|||.++.. .+ +++..++++.+++..++. +..+..+.+
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~ 163 (267)
T PRK14237 91 RKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALT 163 (267)
T ss_pred cccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCccc
Confidence 3899999999998999999987532 12 133455666776654432 234667789
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEE
Q 000521 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVK 808 (1446)
Q Consensus 730 LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~ 808 (1446)
||||||||++||||++.+|++++|||||++||+.+.+++.+. +.. +.++.|+|++||+++.+.. ||++++|++|+++
T Consensus 164 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 241 (267)
T PRK14237 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET-MFE-LKKNYTIIIVTHNMQQAARASDYTAFFYLGDLI 241 (267)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999888875 333 3456899999999998765 9999999999999
Q ss_pred EecChhHHHh
Q 000521 809 WIGSSADLAV 818 (1446)
Q Consensus 809 ~~g~~~~l~~ 818 (1446)
+.|+++++..
T Consensus 242 ~~g~~~~~~~ 251 (267)
T PRK14237 242 EYDKTRNIFT 251 (267)
T ss_pred EeCCHHHHhc
Confidence 9999988753
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.64 Aligned_cols=188 Identities=32% Similarity=0.437 Sum_probs=154.5
Q ss_pred EEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------eEEEEcC
Q 000521 604 MQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAYVPQ 675 (1446)
Q Consensus 604 ~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------~i~yv~Q 675 (1446)
++|+++.|+. .++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++| .++|++|
T Consensus 2 ~~~l~~~~~~------~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLTVSYGG------HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred cccceeEECC------EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 4677888742 2359999999999999999999999999999999999999999999987 3999999
Q ss_pred CCCC---CCccHHHHHhcCCCC-----------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 676 VPWI---LSGTIRDNILFGKNY-----------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 676 ~p~l---~~~ti~~nI~~g~~~-----------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
+|.+ ++.|++||+.++... ++++.+++++.++++.... ....+||||||||++||
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 144 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLA 144 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHH
Confidence 9976 557999999875321 1234566677777654332 34568999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++| +++.
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYEL-LRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999988876 33212257899999999999865 9999999886 4443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=324.10 Aligned_cols=197 Identities=26% Similarity=0.372 Sum_probs=162.2
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|+++.|+. +.+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 75 (232)
T cd03218 2 RAENLSKRYGK------RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75 (232)
T ss_pred eEEEEEEEeCC------EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhc
Confidence 57889998852 2359999999999999999999999999999999999999999998865
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLAL 740 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~l 740 (1446)
.++|++|++.+++. |++||+.++.+ .+. ++.++.++..++. ........+||||||||++|
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~l 144 (232)
T cd03218 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEI 144 (232)
T ss_pred cEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHH
Confidence 38999999988876 99999987532 111 1233444444443 23355667999999999999
Q ss_pred HHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHH
Q 000521 741 ARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 741 ARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
|||+..+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||+|++|++|++.+.|+.+++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKI-IKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999988875 33212347899999999987665 9999999999999999888764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=342.72 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=168.1
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|.. ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 3 ~L~~~nls~~y~~------~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGD------TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECC------EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHh
Confidence 4788999999852 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCCC-CCccHHHHHhcCCC-----C------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 -SIAYVPQVPWI-LSGTIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 -~i~yv~Q~p~l-~~~ti~~nI~~g~~-----~------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
++|||+|++.+ ++.|++||+.++.. + +.++.+++++..++.... .....+||||||
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~-----------~~~~~~LSgGer 145 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA-----------DRPVTSLSGGER 145 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHH
Confidence 39999999987 56799999988642 1 123455666666664322 334568999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChh
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1446)
||++|||||+++|+++||||||++||+.....+++. +.....+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~l-L~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ 224 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLEL-VRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPA 224 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999998888865 3321224789999999999985 59999999999999999999
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
++..
T Consensus 225 ev~~ 228 (402)
T PRK09536 225 DVLT 228 (402)
T ss_pred HHhC
Confidence 8754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=334.92 Aligned_cols=202 Identities=26% Similarity=0.389 Sum_probs=166.6
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|.. ..+|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~~i~~~~l~~~~~~------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 76 (303)
T TIGR01288 3 VAIDLVGVSKSYGD------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLAR 76 (303)
T ss_pred cEEEEEeEEEEeCC------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHh
Confidence 46889999999852 2359999999999999999999999999999999999999999999875
Q ss_pred -eEEEEcCCCCCCC-ccHHHHHhc-CC--CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHH
Q 000521 669 -SIAYVPQVPWILS-GTIRDNILF-GK--NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~-~ti~~nI~~-g~--~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~ 739 (1446)
.+||++|++.++. .|++||+.+ +. ..+. ++.+++++.+++... ......+||||||||++
T Consensus 77 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 145 (303)
T TIGR01288 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADVRVALLSGGMKRRLT 145 (303)
T ss_pred hcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCchhhCCHHHHHHHH
Confidence 4999999998885 599999974 22 1222 223344555554322 23345689999999999
Q ss_pred HHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
||||+..+|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999988876 33212357899999999999865 99999999999999999999864
Q ss_pred c
Q 000521 819 S 819 (1446)
Q Consensus 819 ~ 819 (1446)
.
T Consensus 225 ~ 225 (303)
T TIGR01288 225 E 225 (303)
T ss_pred h
Confidence 3
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=330.64 Aligned_cols=206 Identities=24% Similarity=0.376 Sum_probs=170.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|+...+...+++|+|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 47899999999643210123469999999999999999999999999999999999999999998875
Q ss_pred --eEEEEcCCCC--CCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVPW--ILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|. +++.|+.||+.|+.. .+ +++.+++++.++|..... ....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-----------HAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHH
Confidence 3899999985 666799999998632 12 234566777777764433 3446899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l 816 (1446)
++||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT-IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 333112 37899999999999888999999999999999999988
Q ss_pred Hh
Q 000521 817 AV 818 (1446)
Q Consensus 817 ~~ 818 (1446)
..
T Consensus 232 ~~ 233 (280)
T PRK13633 232 FK 233 (280)
T ss_pred hc
Confidence 54
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.13 Aligned_cols=205 Identities=23% Similarity=0.343 Sum_probs=170.2
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC----
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG---- 668 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~---- 668 (1446)
.+..++++|+++.|.. . ++|+|+||+|++|++++|+||||||||||+++|.|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~ 89 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---K---QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIY 89 (267)
T ss_pred CCceEEEEeEEEEECC---E---EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECc
Confidence 3457899999999852 2 359999999999999999999999999999999999975 899998865
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCC---C--C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCC
Q 000521 669 -----------SIAYVPQVPWILSGTIRDNILFGKN---Y--D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728 (1446)
Q Consensus 669 -----------~i~yv~Q~p~l~~~ti~~nI~~g~~---~--~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~ 728 (1446)
.++|++|+|.+++.|++||+.++.. . . .++.+++++.+++..++. +..+..+.
T Consensus 90 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~ 162 (267)
T PRK14235 90 DPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGT 162 (267)
T ss_pred ccccchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcc
Confidence 3899999999998899999987531 1 1 123455666666644322 22356678
Q ss_pred ccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEE
Q 000521 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQV 807 (1446)
Q Consensus 729 ~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i 807 (1446)
+||||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEEL-IDE-LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHH-HHH-HhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999988875 433 3446899999999999865 999999999999
Q ss_pred EEecChhHHH
Q 000521 808 KWIGSSADLA 817 (1446)
Q Consensus 808 ~~~g~~~~l~ 817 (1446)
++.|+.+++.
T Consensus 241 ~~~g~~~~~~ 250 (267)
T PRK14235 241 VEVGDTEKMF 250 (267)
T ss_pred EEeCCHHHHH
Confidence 9999988875
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=309.02 Aligned_cols=166 Identities=33% Similarity=0.550 Sum_probs=148.8
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------e
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~ 669 (1446)
++++|+++.|+... +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~~~----~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSFSYPEQE----QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEEEeCCCC----ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 35789999985321 2359999999999999999999999999999999999999999999886 3
Q ss_pred EEEEcCCCCCCCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCC
Q 000521 670 IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSD 749 (1446)
Q Consensus 670 i~yv~Q~p~l~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~ 749 (1446)
++|++|+|++++.|++||| ..+||||||||++||||++.+|+
T Consensus 77 i~~~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 77 ISVLNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred EEEEccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999998 45899999999999999999999
Q ss_pred EEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCCEEEEec
Q 000521 750 IYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 750 illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g 811 (1446)
+++|||||++||+.+.+.+++. +.. +.+++|+|++||+.+.++.||++++|++|++++.|
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSL-IFE-VLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHH-HHH-HcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999988876 333 34578999999999999889999999999998654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=326.88 Aligned_cols=203 Identities=26% Similarity=0.320 Sum_probs=168.0
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcC---ccC--CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE---MML--THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~---~~~--~~G~i~~~~------- 668 (1446)
.++++|+++.|.. ..+|+|+||++++||+++|+||||||||||+++|.|. .++ ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14245 3 KIDARDVNFWYGD------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76 (250)
T ss_pred EEEEEEEEEEECC------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccc
Confidence 5789999999852 2359999999999999999999999999999999996 454 589998764
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCC----CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 --------SIAYVPQVPWILSGTIRDNILFGKN----YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~~ti~~nI~~g~~----~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.+++.|++||+.++.. .+ +++.+++++.+++..++. +..+..+.+|||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 149 (250)
T PRK14245 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSG 149 (250)
T ss_pred ccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCH
Confidence 3899999999998899999987532 11 123455666666644332 234567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEEL-IHE-LKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999988876 333 3457899999999999865 9999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14245 228 DTKKIFT 234 (250)
T ss_pred CHHHHhc
Confidence 9998854
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=326.67 Aligned_cols=204 Identities=23% Similarity=0.338 Sum_probs=167.3
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc--C---CCcEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM--L---THGSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~--~---~~G~i~~~~------ 668 (1446)
..++++|+++.|.. .++|+|+||+|++||+++|+|+||||||||+++|.|.++ | ++|+|.++|
T Consensus 11 ~~l~i~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~ 84 (259)
T PRK14274 11 EVYQINGMNLWYGQ------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG 84 (259)
T ss_pred ceEEEeeEEEEECC------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence 35899999999852 235999999999999999999999999999999999987 3 589998754
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCC----Chh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 669 ---------SIAYVPQVPWILSGTIRDNILFGKNY----DPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 669 ---------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
.+||++|+|.+++.|++||+.++... +++ +.+++++..++.+++. +..+..+.+||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS 157 (259)
T PRK14274 85 KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLS 157 (259)
T ss_pred ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCC
Confidence 38999999999989999999875321 211 2334455555543221 23356778999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
||||||++||||++.+|++++|||||++||+++.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 158 ~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~ 235 (259)
T PRK14274 158 GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEEL-ILK-LKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVEC 235 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998888765 433 3456899999999998765 999999999999999
Q ss_pred cChhHHHh
Q 000521 811 GSSADLAV 818 (1446)
Q Consensus 811 g~~~~l~~ 818 (1446)
|+++++..
T Consensus 236 g~~~~~~~ 243 (259)
T PRK14274 236 NDTNKMFS 243 (259)
T ss_pred CCHHHHhh
Confidence 99998754
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=330.88 Aligned_cols=203 Identities=28% Similarity=0.384 Sum_probs=169.4
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCC---cEEEEeC--------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTH---GSIHASG-------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~---G~i~~~~-------- 668 (1446)
..++++|+++.|+... .++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 4 ~~l~i~~l~~~~~~~~----~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~ 79 (282)
T PRK13640 4 NIVEFKHVSFTYPDSK----KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 (282)
T ss_pred ceEEEEEEEEEcCCCC----ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH
Confidence 4588999999985321 235999999999999999999999999999999999999988 8998865
Q ss_pred -----eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 -----SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 -----~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.++||+|+|+ +++.|++|||.++.. .++ ++..++++.++++... .....+|||||
T Consensus 80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LS~G~ 148 (282)
T PRK13640 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYI-----------DSEPANLSGGQ 148 (282)
T ss_pred HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHH
Confidence 4899999995 567899999987632 222 2355666777775433 33446999999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEecCh
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~ 813 (1446)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... .|+|+|++||+++.+..||++++|++|++++.|++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL-IRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 333122 37899999999999888999999999999999999
Q ss_pred hHHHh
Q 000521 814 ADLAV 818 (1446)
Q Consensus 814 ~~l~~ 818 (1446)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88754
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=319.69 Aligned_cols=190 Identities=24% Similarity=0.353 Sum_probs=158.0
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------e
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~ 669 (1446)
++++|+++.|.. . ++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++| .
T Consensus 1 i~~~~~~~~~~~---~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGK---K---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEEEEECC---E---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 367899998853 2 3599999999999 9999999999999999999999999999999876 3
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
++|++|+|.++.. |++||+.+... .+ +++.+++++.+++....+ ....+||||||||++||
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la 142 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIA 142 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHH
Confidence 8999999998876 99999986321 12 234456666666654322 34468999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
||++++|+++||||||++||+.+.+++.+. +.. ..+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 143 ~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 143 QALVGDPSILIVDEPTAGLDPEERIRFRNL-LSE-LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHH-HhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998876 333 3346899999999999865 9999999999998654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=320.51 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=160.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------e
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------S 669 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~ 669 (1446)
++++|+++.|+... ...++++|+||++++|++++|+|+||||||||+++|.|+++|++|+|.++| .
T Consensus 2 l~~~~v~~~~~~~~--~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 2 ITADALTKRFRDVK--KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred eEEEEEEEecCCCC--ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 57889999986421 112469999999999999999999999999999999999999999999875 4
Q ss_pred EEEEcCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 670 IAYVPQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 i~yv~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
++|++|+|.+++. |++||+.+... .+ .++..+.++..++... ......+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-----------LDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhhhhhhcCHHHHHHHHHH
Confidence 8999999998875 99999975321 12 2234555565555432 3456678999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREF-IRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999888876 33312347899999999998765 9999999999998654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=330.54 Aligned_cols=201 Identities=23% Similarity=0.360 Sum_probs=168.7
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.. ..+++|+||+|++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~-----~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~ 79 (283)
T PRK13636 5 ILKVEELNYNYSDG-----THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMK 79 (283)
T ss_pred eEEEEeEEEEeCCC-----CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHH
Confidence 58899999999521 2359999999999999999999999999999999999999999998876
Q ss_pred ---eEEEEcCCC--CCCCccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000521 669 ---SIAYVPQVP--WILSGTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1446)
Q Consensus 669 ---~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 736 (1446)
.++|++|+| .+++.|++||+.++.. +. .++.+++++.++|... ......+|||||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~q 148 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKK 148 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHH
Confidence 389999998 5778899999987532 22 1345556666666432 24567799999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChh
Q 000521 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 737 Ri~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~ 814 (1446)
|++|||||+.+|+++||||||++||+.+.+.+.+. +..... .|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL-LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH-HHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999988775 332122 2789999999999987 59999999999999999999
Q ss_pred HHHh
Q 000521 815 DLAV 818 (1446)
Q Consensus 815 ~l~~ 818 (1446)
++..
T Consensus 228 ~~~~ 231 (283)
T PRK13636 228 EVFA 231 (283)
T ss_pred HHhc
Confidence 8754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=357.51 Aligned_cols=213 Identities=23% Similarity=0.363 Sum_probs=176.2
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEEcCeeCCCCChHh-Hhcc
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI--CGGQILVDGLNIINTPVRD-LRGR 1295 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~--~~G~I~IDG~di~~i~~~~-lR~~ 1295 (1446)
|+++|++++|+. .++|+|+||++++||++||+|+||||||||+++|.|+++| ++|+|.+||.++...+... .|++
T Consensus 2 l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 789999999963 3699999999999999999999999999999999999987 7999999999998877654 4678
Q ss_pred eEEEeCCCCCCCC-cHHHhcCCCCC-------CChHHHHHHHHHccHHHHHHhCCCchhh-hcCCCCCChhHHHHHHHHH
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFHM-------NDDLKIWSVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1296 i~~VpQdp~lF~g-TIR~NLdp~~~-------~~d~ei~~aL~~~~L~~~i~~lgLdt~v-~e~G~~LSgGQrQrl~LAR 1366 (1446)
++||||+|.+|+. |+++|+..... .+.++..+ ...+.++.+|++... ......||||||||++|||
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 9999999988875 99999865321 11111111 123344445665332 2334579999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||+++|+||||||||++||+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.+.+..+
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999998753 47899999999999876 899999999999998887643
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.88 Aligned_cols=203 Identities=27% Similarity=0.414 Sum_probs=167.6
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|+.. . +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~~-~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 81 (271)
T PRK13632 6 VMIKVENVSFSYPNS-E---NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI 81 (271)
T ss_pred eEEEEEeEEEEcCCC-C---ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH
Confidence 468899999998532 1 2459999999999999999999999999999999999999999998865
Q ss_pred --eEEEEcCCCC--CCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++||+|+|. +++.|++|||.++.. ++.+ +..++++..++...+ .....+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qr 150 (271)
T PRK13632 82 RKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQR 150 (271)
T ss_pred hcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHH
Confidence 3899999984 556799999987532 3333 234555666665433 34557999999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccC-CceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~-~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l 816 (1446)
++||||++.+|+++||||||++||+.+.+.+++. +.....+ ++|+|++||+++.+..||++++|++|++.+.|+.+++
T Consensus 151 l~laral~~~p~lllLDEP~~gLD~~~~~~l~~~-l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 151 VAIASVLALNPEIIIFDESTSMLDPKGKREIKKI-MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988876 3321223 4899999999999888999999999999999998876
Q ss_pred Hh
Q 000521 817 AV 818 (1446)
Q Consensus 817 ~~ 818 (1446)
..
T Consensus 230 ~~ 231 (271)
T PRK13632 230 LN 231 (271)
T ss_pred hc
Confidence 53
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=315.56 Aligned_cols=194 Identities=23% Similarity=0.315 Sum_probs=163.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.++++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. . ..|++++
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~-~~~~~~~ 76 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--P-DVAEACH 76 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--h-hhHhhcE
Confidence 3789999999964 369999999999999999999999999999999999999999999999999753 2 2788999
Q ss_pred EEeCCCCCC-CCcHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 000521 1298 VVPQSPFLF-EGSLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~VpQdp~lF-~gTIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ 1373 (1446)
+++|++.++ ..|+++|+.... ...++++.++++..++.+ ........||+|||||++||||++++|+
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP---------LAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH---------HHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999988765 579999986432 123444556666665543 2223334799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhhcCEEEEEeC
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILILDH 1426 (1446)
Q Consensus 1374 ILlLDEaTS~lD~~Te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~~DrIlvl~~ 1426 (1446)
+|+|||||++||..+.+.+.+.|++. -+++|+|++||+++.+.. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999864 358999999999999988 99988754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=327.10 Aligned_cols=205 Identities=25% Similarity=0.344 Sum_probs=168.2
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC-----
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~----- 668 (1446)
+..++++|+++.|.. ..+|+|+||+|++||+++|+||||||||||+++|+|.++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~ 84 (269)
T PRK14259 11 NIIISLQNVTISYGT------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYD 84 (269)
T ss_pred CceEEEEeEEEEECC------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 356899999999853 235999999999999999999999999999999999987 6899998765
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCCC---C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 ----------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 ----------~i~yv~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.++..|++||+.++... + +++..++++.+++...+ .+.......+|||
T Consensus 85 ~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~ 157 (269)
T PRK14259 85 PRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSG 157 (269)
T ss_pred ccCCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCH
Confidence 38999999999988999999876432 1 12334455555543222 1234566789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeC-------
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDK------- 804 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~------- 804 (1446)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-l~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEET-MHE-LKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999988875 333 3456899999999998765 999999996
Q ss_pred ----CEEEEecChhHHHh
Q 000521 805 ----GQVKWIGSSADLAV 818 (1446)
Q Consensus 805 ----G~i~~~g~~~~l~~ 818 (1446)
|++++.|+.+++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67899999888754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=317.38 Aligned_cols=190 Identities=27% Similarity=0.374 Sum_probs=157.7
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------eE
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~i 670 (1446)
++++|+++.|+. . ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 i~~~~l~~~~~~----~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRFSYGE----Q----PMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEEEeCC----E----ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 357889998842 1 1399999999999999999999999999999999999999999976 38
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCCC-------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000521 671 AYVPQVPWILSG-TIRDNILFGKNY-------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 671 ~yv~Q~p~l~~~-ti~~nI~~g~~~-------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lAR 742 (1446)
+|++|+|.++.. |++||+.++... ++++..++++.++++..... ...+||||||||++|||
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ia~ 141 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR-----------LPGELSGGERQRVALAR 141 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 999999998875 999999875321 13355666777777544433 34589999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 743 aly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|++.+|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDL-VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999988876 33211 237899999999999876 9999999999997653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=327.98 Aligned_cols=205 Identities=25% Similarity=0.306 Sum_probs=166.9
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC-----
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG----- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~----- 668 (1446)
+..++++|+++.|+. ..+|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 19 ~~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 19 EHILEVKDLSIYYGE------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred CceEEEEEEEEEeCC------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 346899999999852 235999999999999999999999999999999999864 6899998754
Q ss_pred ----------eEEEEcCCCCCCCccHHHHHhcCCCCC--------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCcc
Q 000521 669 ----------SIAYVPQVPWILSGTIRDNILFGKNYD--------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730 (1446)
Q Consensus 669 ----------~i~yv~Q~p~l~~~ti~~nI~~g~~~~--------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~L 730 (1446)
.++|++|+|.+++.|++||+.++..+. +++..+.++.+++..++. ...+....+|
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~L 165 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSL 165 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccC
Confidence 489999999999899999998753211 122334444444432221 2345677899
Q ss_pred chHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEE
Q 000521 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKW 809 (1446)
Q Consensus 731 SGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~ 809 (1446)
|||||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL-ITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHH-HHH-HhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988775 333 3446899999999998764 99999999999999
Q ss_pred ecChhHHHh
Q 000521 810 IGSSADLAV 818 (1446)
Q Consensus 810 ~g~~~~l~~ 818 (1446)
.|+++++..
T Consensus 244 ~~~~~~~~~ 252 (268)
T PRK14248 244 YDQTEQIFT 252 (268)
T ss_pred eCCHHHHHh
Confidence 999888753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=331.90 Aligned_cols=207 Identities=29% Similarity=0.405 Sum_probs=165.0
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|+.... ...++|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTP-FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCc-cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35889999999964210 112469999999999999999999999999999999999999999998754
Q ss_pred -------eEEEEcCCCC--CCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 -------SIAYVPQVPW--ILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 -------~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.|+|++|+|. +++.|++|||.++.. .+.+ +..+.++..+|..+ ..+....+|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~ 153 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSG 153 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCH
Confidence 3899999984 667899999987632 1221 22233444433211 13456678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEe
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 810 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 810 (1446)
|||||++||||++.+|+++||||||++||+.+.+.+++. +..... .++|+|++||+++.+. .||+|++|++|++++.
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINL-FERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999988775 332122 3789999999999875 4999999999999999
Q ss_pred cChhHHHh
Q 000521 811 GSSADLAV 818 (1446)
Q Consensus 811 g~~~~l~~ 818 (1446)
|+++++..
T Consensus 233 g~~~~~~~ 240 (289)
T PRK13645 233 GSPFEIFS 240 (289)
T ss_pred CCHHHHhc
Confidence 99888753
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=320.45 Aligned_cols=193 Identities=26% Similarity=0.380 Sum_probs=157.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++++|+... ...++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~--~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (221)
T TIGR02211 2 LKCENLGKRYQEGK--LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79 (221)
T ss_pred EEEEeeeEEccCCC--cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence 57889999985321 112469999999999999999999999999999999999999999998864
Q ss_pred ----eEEEEcCCCCCCC-ccHHHHHhcCC---CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000521 669 ----SIAYVPQVPWILS-GTIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1446)
Q Consensus 669 ----~i~yv~Q~p~l~~-~ti~~nI~~g~---~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 736 (1446)
.++|++|+|.+++ .|++||+.++. .++. ++..+.++.++++.. ......+|||||||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~q 148 (221)
T TIGR02211 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHR-----------INHRPSELSGGERQ 148 (221)
T ss_pred HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHH
Confidence 3899999998885 59999998742 1222 234455555555432 23445689999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEE
Q 000521 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVK 808 (1446)
Q Consensus 737 Ri~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~ 808 (1446)
|++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+..+|++++|++|+++
T Consensus 149 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL-MLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988876 332112 378999999999998889999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=326.21 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=167.2
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~------- 668 (1446)
.++++|+++.|.. . ++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVHLSYGN---Y---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeEEEECC---e---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 4789999999852 2 35999999999999999999999999999999999997 4799998765
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCC---C-Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++..+.. ...+..+.+|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 150 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETK-------DNLDRNAQAFSG 150 (251)
T ss_pred chHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchH-------HHhccChhhCCH
Confidence 3899999999999999999987532 1 11 23445556555532211 123456789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++++|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++.+.|
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET-LME-LKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHH-HHH-HHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999888776 333 3456899999999999765 9999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14251 229 PTEEMFI 235 (251)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=330.87 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=166.5
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|+.... ...++|+|+||++++|++++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (280)
T PRK13649 2 GINLQNVSYTYQAGTP-FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDI 80 (280)
T ss_pred eEEEEEEEEEcCCCCc-cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCH
Confidence 3678999999864211 112469999999999999999999999999999999999999999998865
Q ss_pred -----eEEEEcCCC--CCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 -----SIAYVPQVP--WILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 -----~i~yv~Q~p--~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.|+|++|+| .+++.|++|||.++.. .+.+ +.+++++..++..+ .......+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~ 150 (280)
T PRK13649 81 KQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQ 150 (280)
T ss_pred HHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHH
Confidence 289999998 5788899999987532 2222 23344444455321 1245567899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecCh
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~ 813 (1446)
|||++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL-FKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999988876 33212347899999999998865 999999999999999998
Q ss_pred hHHHh
Q 000521 814 ADLAV 818 (1446)
Q Consensus 814 ~~l~~ 818 (1446)
+++..
T Consensus 230 ~~~~~ 234 (280)
T PRK13649 230 KDIFQ 234 (280)
T ss_pred HHHhc
Confidence 88754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=336.26 Aligned_cols=203 Identities=26% Similarity=0.373 Sum_probs=168.0
Q ss_pred CceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------- 668 (1446)
...++++|+++.|.. ..+|+|+||+|++|++++++||||||||||+++|+|+++|++|+|.++|
T Consensus 39 ~~~i~i~nl~k~y~~------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSKSYGD------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 346899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred --eEEEEcCCCCCC-CccHHHHHhc-CCC--CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 --SIAYVPQVPWIL-SGTIRDNILF-GKN--YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 --~i~yv~Q~p~l~-~~ti~~nI~~-g~~--~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.+|||||++.++ +.|++||+.+ +.. .+. ++.+++++.++|... ...+..+||||||||+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~-----------~~~~~~~LS~G~kqrv 181 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESK-----------ADARVSDLSGGMKRRL 181 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hCCChhhCCHHHHHHH
Confidence 499999999986 4599999975 321 121 233344554444321 2334568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
+||||+.++|+++||||||++||+.+.+++.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~-l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWER-LRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999998876 33312357899999999999875 9999999999999999999986
Q ss_pred hc
Q 000521 818 VS 819 (1446)
Q Consensus 818 ~~ 819 (1446)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 54
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=324.40 Aligned_cols=203 Identities=23% Similarity=0.349 Sum_probs=166.6
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCC-----CcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT-----HGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~-----~G~i~~~~------- 668 (1446)
.++++|+++.|.. +.+|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNFFYHK------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEEEECC------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 5789999999852 23599999999999999999999999999999999999987 69997754
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.+++.|++||+.++..+ .+ ++.+++++..++...+. +..+..+.+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 150 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSG 150 (251)
T ss_pred cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCH
Confidence 39999999999989999999876421 11 12233334444432221 234667889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~-~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEEL-MQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999988765 433 3457899999999999876 8999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14249 229 RTGEIFS 235 (251)
T ss_pred CHHHHHh
Confidence 9888743
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=328.00 Aligned_cols=201 Identities=24% Similarity=0.343 Sum_probs=165.3
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|.. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (269)
T PRK11831 6 NLVDMRGVSFTRGN------RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL 79 (269)
T ss_pred ceEEEeCeEEEECC------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH
Confidence 46899999999842 2359999999999999999999999999999999999999999998875
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCC----CCChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHH
Q 000521 669 -----SIAYVPQVPWILSG-TIRDNILFGK----NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQ 734 (1446)
Q Consensus 669 -----~i~yv~Q~p~l~~~-ti~~nI~~g~----~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQ 734 (1446)
.++|++|++.+++. |++||+.++. ..+.+ +..+.++..++... ......+|||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 148 (269)
T PRK11831 80 YTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGA-----------AKLMPSELSGGM 148 (269)
T ss_pred HHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHH
Confidence 38999999999876 9999998642 12221 23344555554322 233456899999
Q ss_pred HHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 735 RARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 735 kqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
|||++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (269)
T PRK11831 149 ARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKL-ISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGS 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999988775 332112 37899999999998875 99999999999999999
Q ss_pred hhHHHh
Q 000521 813 SADLAV 818 (1446)
Q Consensus 813 ~~~l~~ 818 (1446)
++++..
T Consensus 228 ~~~~~~ 233 (269)
T PRK11831 228 AQALQA 233 (269)
T ss_pred HHHHhc
Confidence 988754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=326.50 Aligned_cols=204 Identities=25% Similarity=0.344 Sum_probs=167.7
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------ 668 (1446)
..++++|+++.|.. +++|+|+||+|++||+++|+|+||||||||+++|.|..+| ++|+|.++|
T Consensus 11 ~~l~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~ 84 (258)
T PRK14268 11 PQIKVENLNLWYGE------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84 (258)
T ss_pred eeEEEeeeEEEeCC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence 46889999998852 2359999999999999999999999999999999999875 799998754
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCC---CChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 ---------SIAYVPQVPWILSGTIRDNILFGKN---YDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 ---------~i~yv~Q~p~l~~~ti~~nI~~g~~---~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|++.+++.|++||+.++.. .+.+ +.+++++.+++..++. ........+|||
T Consensus 85 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 157 (258)
T PRK14268 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSG 157 (258)
T ss_pred cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCH
Confidence 3899999999998999999987531 2222 2344555555532221 223556779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL-IMN-LKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHH-HHH-HhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988875 333 3457899999999999865 9999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+++++..
T Consensus 236 ~~~~~~~ 242 (258)
T PRK14268 236 QTRQIFH 242 (258)
T ss_pred CHHHHhc
Confidence 9988753
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=363.59 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=175.0
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCC----------
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNII---------- 1285 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~---------- 1285 (1446)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 69999999999632 236999999999999999999999999999999999999999999999998652
Q ss_pred CCChH---hHh-cceEEEeCCC--CCCC-CcHHHhcCCCC----CCChHHHHHHHHHccHHHHHHhCCCc---hhhhcCC
Q 000521 1286 NTPVR---DLR-GRFAVVPQSP--FLFE-GSLRDNLDPFH----MNDDLKIWSVLEKCHVKEEVEAVGLE---TFVKESG 1351 (1446)
Q Consensus 1286 ~i~~~---~lR-~~i~~VpQdp--~lF~-gTIR~NLdp~~----~~~d~ei~~aL~~~~L~~~i~~lgLd---t~v~e~G 1351 (1446)
+.+.. .+| ++|++|+|+| .+++ -|+++|+.... ..+..+..+ .+.+.++.+|++ .......
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHCCCCChhhHHhCCC
Confidence 22322 344 5799999999 5776 49999986421 112211111 112333344553 2355666
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C-CcEEEEeccCchhHhh-cCEEEEEeCCE
Q 000521 1352 ISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-K-GMTVITIAHRISTVLN-MDEILILDHGH 1428 (1446)
Q Consensus 1352 ~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~-~~TvI~IaHrl~ti~~-~DrIlvl~~G~ 1428 (1446)
.+||||||||++|||||+.+|++|||||||++||..+.+.+.+.|++.. + ++|||+|||+++.+.. ||||++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 7899999999999999999999999999999999999999999998864 2 7899999999999865 89999999999
Q ss_pred EEEEeccchhh
Q 000521 1429 LVCISFICRYF 1439 (1446)
Q Consensus 1429 vvE~~~~~~~~ 1439 (1446)
+++.|.+..++
T Consensus 247 i~~~g~~~~~~ 257 (623)
T PRK10261 247 AVETGSVEQIF 257 (623)
T ss_pred ecccCCHHHhh
Confidence 99998877654
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=324.79 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=169.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------- 668 (1446)
-++++|+++.|.. +.+|+|+||++++||+++|+|+||||||||+++|+|..+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 4 KMESKNLNLWYGE------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred EEEEEEeEEEECC------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 4788999999852 2359999999999999999999999999999999999875 799998865
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 --------SIAYVPQVPWILSGTIRDNILFGKNY----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|++.+++.|++||+.++... +. ++..++++.+++..++.. ..+.....|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCH
Confidence 38999999999999999999875321 11 234566777766543321 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-L~~-~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDL-MVE-LKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999988775 433 3446899999999998775 9999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+.+++..
T Consensus 229 ~~~~~~~ 235 (251)
T PRK14270 229 KTEKIFL 235 (251)
T ss_pred CHHHHhc
Confidence 9888753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=324.94 Aligned_cols=203 Identities=28% Similarity=0.355 Sum_probs=166.0
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCc--cC---CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEM--ML---THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~--~~---~~G~i~~~~------- 668 (1446)
.++++|+++.|.. +++|+|+||++++||+++|+||||||||||+++|.|.. +| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLSVYYNK------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeEEEECC------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 4789999999852 23599999999999999999999999999999999985 36 589998765
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCC---C-Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 --------SIAYVPQVPWILSGTIRDNILFGKN---Y-DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~~ti~~nI~~g~~---~-~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.+++.|++||+.++.. . ++ ++..++++.+++...+. +..+....+|||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSG 151 (252)
T ss_pred cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCH
Confidence 3899999999999999999986521 1 11 22333455555543222 234567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET-LLG-LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHH-HHH-HhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988875 333 344689999999999876 49999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+.+++..
T Consensus 230 ~~~~~~~ 236 (252)
T PRK14239 230 DTKQMFM 236 (252)
T ss_pred CHHHHHh
Confidence 9888753
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=312.22 Aligned_cols=213 Identities=25% Similarity=0.318 Sum_probs=180.3
Q ss_pred cEEEEEEEEEecCCC----------------------CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Q 000521 1218 LIEFQNVTMRYKPSL----------------------PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~----------------------~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G 1275 (1446)
.|+++||+.-+..+. ..-++|+||+|+.||..-|.|=||||||||+.++.|++||++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 588888888775431 1237899999999999999999999999999999999999999
Q ss_pred eEEEcCeeCCCCChHhHh----cceEEEeCCCCCCCC-cHHHhcCCCCCC---C----hHHHHHHHHHccHHHHHHhCCC
Q 000521 1276 QILVDGLNIINTPVRDLR----GRFAVVPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGL 1343 (1446)
Q Consensus 1276 ~I~IDG~di~~i~~~~lR----~~i~~VpQdp~lF~g-TIR~NLdp~~~~---~----d~ei~~aL~~~~L~~~i~~lgL 1343 (1446)
+|++||.||..++.++|| +++++|.|.--||+- ||-+|..++-+. + .+...++|+.+||.++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~------ 157 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGY------ 157 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhh------
Confidence 999999999999988875 579999999999986 999999876432 2 2234455666665543
Q ss_pred chhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHh-hcCE
Q 000521 1344 ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL-NMDE 1420 (1446)
Q Consensus 1344 dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~-~~Dr 1420 (1446)
-......||||+|||+.|||||..+|+||++|||.|+||+--...+|+-+.+.- -++|+++|||+|+... --||
T Consensus 158 ---~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~r 234 (386)
T COG4175 158 ---ADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDR 234 (386)
T ss_pred ---hhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccce
Confidence 334456799999999999999999999999999999999999999998876543 3799999999999764 5799
Q ss_pred EEEEeCCEEEEEeccchhh
Q 000521 1421 ILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1421 Ilvl~~G~vvE~~~~~~~~ 1439 (1446)
|..|++|+|+..|+|+...
T Consensus 235 IaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 235 IAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred EEEecCCeEEEeCCHHHHH
Confidence 9999999999999998654
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=322.63 Aligned_cols=199 Identities=26% Similarity=0.353 Sum_probs=164.1
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|+. +++++|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSKHFGP------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEEEECC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 568899998852 2359999999999999999999999999999999999999999998875
Q ss_pred --eEEEEcCCCCCCC-ccHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVPWILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|++.++. .|++||+.++. ..+. ++..++++..+++. ........||||||||
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qr 144 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAE-----------RAHHYPSELSGGQQQR 144 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChH-----------HHhcChhhcCHHHHHH
Confidence 3899999998875 59999998753 1222 23344455444432 2344557899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
++||||++.+|++++|||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~-l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKV-MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999988875 33212347899999999999875 999999999999999998876
Q ss_pred Hh
Q 000521 817 AV 818 (1446)
Q Consensus 817 ~~ 818 (1446)
..
T Consensus 224 ~~ 225 (240)
T PRK09493 224 IK 225 (240)
T ss_pred hc
Confidence 43
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=315.04 Aligned_cols=192 Identities=20% Similarity=0.273 Sum_probs=160.1
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceEE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~~ 1298 (1446)
++++|++++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ ...|++++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 578999999964 36999999999999999999999999999999999999999999999999998765 456789999
Q ss_pred EeCCCCCCC-CcHHHhcCCCCC-C--ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 000521 1299 VPQSPFLFE-GSLRDNLDPFHM-N--DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 VpQdp~lF~-gTIR~NLdp~~~-~--~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1374 (1446)
+||++.+|+ .|+++|+..... . .++++.++++..++.+ .......+||+|||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~---------~~~~~~~~LS~G~~qrv~la~al~~~p~l 148 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG---------FEDLPAAQLSAGQQRRLALARLWLSRAPL 148 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH---------HhcCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 999998887 699999864321 1 1234555566555543 33344457999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeccCchhHhhcCEEEE
Q 000521 1375 LCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLNMDEILI 1423 (1446)
Q Consensus 1375 LlLDEaTS~lD~~Te~~Iq~~I~~~-~~~~TvI~IaHrl~ti~~~DrIlv 1423 (1446)
++|||||++||..+.+.+.+.|++. .++.|+|++||+...+. ||+++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 9999999999999999999999875 35789999999985543 476654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=317.33 Aligned_cols=191 Identities=23% Similarity=0.390 Sum_probs=157.6
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---------eEEEE
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------SIAYV 673 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------~i~yv 673 (1446)
+++|+++.|+. +++++|+||++++|++++|+||||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 2 ~~~~l~~~~~~------~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~ 75 (210)
T cd03269 2 EVENVTKRFGR------VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75 (210)
T ss_pred EEEEEEEEECC------EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEe
Confidence 57888888842 2359999999999999999999999999999999999999999999986 49999
Q ss_pred cCCCCCCCc-cHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000521 674 PQVPWILSG-TIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1446)
Q Consensus 674 ~Q~p~l~~~-ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly 745 (1446)
+|++.++.. |++||+.++.. .+ +++..+.++..+++.. ......+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~al~ 144 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEY-----------ANKRVEELSKGNQQKVQFIAAVI 144 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHH-----------HhCcHhhCCHHHHHHHHHHHHHh
Confidence 999988875 99999976421 11 2234455555555432 23456789999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 746 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++.+.|
T Consensus 145 ~~p~~lllDEP~~~LD~~~~~~~~~~-l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 145 HDPELLILDEPFSGLDPVNVELLKDV-IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHH-HHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988876 33212347899999999998865 9999999999998653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=340.42 Aligned_cols=188 Identities=25% Similarity=0.389 Sum_probs=158.1
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------------eEEEEcCCCCCCC-c
Q 000521 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------------SIAYVPQVPWILS-G 682 (1446)
Q Consensus 621 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------------~i~yv~Q~p~l~~-~ 682 (1446)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++| +++||+|++.++. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 359999999999999999999999999999999999999999998865 4899999999886 4
Q ss_pred cHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcC
Q 000521 683 TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755 (1446)
Q Consensus 683 ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDe 755 (1446)
|++|||.++.. ++. ++..++++.++|+... .....+||||||||++||||++.+|+++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~-----------~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYA-----------HSYPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh-----------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999987632 222 3445566666665433 33446899999999999999999999999999
Q ss_pred CcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHHHhc
Q 000521 756 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 756 p~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
||++||+.+.+.+.+.+..-....++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999998887632211124789999999999875 4999999999999999999988653
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=339.61 Aligned_cols=188 Identities=26% Similarity=0.397 Sum_probs=158.5
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---------------------eEEEEcCCCCC
Q 000521 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------------------SIAYVPQVPWI 679 (1446)
Q Consensus 621 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~---------------------~i~yv~Q~p~l 679 (1446)
.+++|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++| .++||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 359999999999999999999999999999999999999999999875 39999999999
Q ss_pred CC-ccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEE
Q 000521 680 LS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751 (1446)
Q Consensus 680 ~~-~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~il 751 (1446)
++ .|++||+.++.. .++ ++..++++..+|+... .....+|||||||||+|||||+.+|+|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~IL 186 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADIL 186 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 97 699999998642 222 2445566666665432 3344589999999999999999999999
Q ss_pred EEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchh-hhCCEEEEEeCCEEEEecChhHHHhc
Q 000521 752 MLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 752 lLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l-~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|||||||+||+.+.+.+.+.+..-....++|+|++||+++.+ ..||+|++|++|++++.|+++++...
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 999999999999999988864321112378999999999986 45999999999999999999998643
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=359.20 Aligned_cols=217 Identities=23% Similarity=0.386 Sum_probs=174.8
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----CCceEEEcCeeCCCCChH
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI-----CGGQILVDGLNIINTPVR 1290 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~-----~~G~I~IDG~di~~i~~~ 1290 (1446)
.++++|++++|+.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++| ++|+|.+||.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 24699999999999999999999999999999999999986 799999999999877654
Q ss_pred h---Hh-cceEEEeCCCC--CCC-CcHHHhcCCC----CCCChHHHHHHHHHccHHHHHHhCCCch---hhhcCCCCCCh
Q 000521 1291 D---LR-GRFAVVPQSPF--LFE-GSLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLET---FVKESGISFSV 1356 (1446)
Q Consensus 1291 ~---lR-~~i~~VpQdp~--lF~-gTIR~NLdp~----~~~~d~ei~~aL~~~~L~~~i~~lgLdt---~v~e~G~~LSg 1356 (1446)
+ .| ++++||||+|. +++ -|+++|+... ...+.++..+ .+.+.++.+|++. .......+|||
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 3 34 57999999985 444 4899987521 1112211111 1223333345532 23455668999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEe
Q 000521 1357 GQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1357 GQrQrl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~ 1433 (1446)
|||||++|||||+.+|++||||||||+||+++.+.+.+.|++.. .++|||+|||+++.+.. ||||++|++|++++.|
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998753 37899999999999875 8999999999999999
Q ss_pred ccchhh
Q 000521 1434 FICRYF 1439 (1446)
Q Consensus 1434 ~~~~~~ 1439 (1446)
.+..++
T Consensus 240 ~~~~~~ 245 (529)
T PRK15134 240 RAATLF 245 (529)
T ss_pred CHHHHh
Confidence 887653
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=320.04 Aligned_cols=201 Identities=22% Similarity=0.319 Sum_probs=162.1
Q ss_pred EEEEEEEEEecCC-----CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEc--C--eeCCCCCh
Q 000521 1219 IEFQNVTMRYKPS-----LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD--G--LNIINTPV 1289 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~-----~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID--G--~di~~i~~ 1289 (1446)
|+++|++++|+.. ..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+| | +++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 2469999999999999999999999999999999999999999999998 4 37766665
Q ss_pred Hh---H-hcceEEEeCCCCCCCC-cHHHhcCCC---CCCChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHH
Q 000521 1290 RD---L-RGRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQ 1360 (1446)
Q Consensus 1290 ~~---l-R~~i~~VpQdp~lF~g-TIR~NLdp~---~~~~d~ei~~aL~~~~L~~~i~~lgLdt~-v~e~G~~LSgGQrQ 1360 (1446)
.. + +++++|+||+|.+|+. |+++|+... .....++..+ ...+.++.+|++.. ......+||+||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 43 3 4679999999998875 999998642 1111111111 12333444466543 24456789999999
Q ss_pred HHHHHHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHh-hcCEEEEE
Q 000521 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVL-NMDEILIL 1424 (1446)
Q Consensus 1361 rl~LARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~-~~DrIlvl 1424 (1446)
|++||||++++|++|+|||||++||.++.+.+.+.|++.. +++|+|+|||+++.+. .||+|+.+
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999998764 4789999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=325.89 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=167.0
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---------
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--------- 668 (1446)
++..++++|+++.|+. +.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 8 ~~~~l~i~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 8 SDTTFALRNVSFRVPG------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81 (265)
T ss_pred CCceEEEeeEEEEECC------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHH
Confidence 3456899999999852 2359999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEcCCCCCCCc-cHHHHHhcCCC--------C---ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 ----SIAYVPQVPWILSG-TIRDNILFGKN--------Y---DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 ----~i~yv~Q~p~l~~~-ti~~nI~~g~~--------~---~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|++.++.. |++||+.++.. . ++++..+.++.++++..+. ....+|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg 150 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-----------RLVDSLSG 150 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCCH
Confidence 38999999876654 99999987531 1 1234556666666654332 33458999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEe
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWI 810 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~ 810 (1446)
|||||++||||+..+|+++||||||++||+.+.+.+.+. +..... .+.|+|++||+++.+. .||+|++|++|++++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~-l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~ 229 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL-VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEe
Confidence 999999999999999999999999999999999888775 332112 3789999999999986 4999999999999999
Q ss_pred cChhHHH
Q 000521 811 GSSADLA 817 (1446)
Q Consensus 811 g~~~~l~ 817 (1446)
|+.+++.
T Consensus 230 ~~~~~~~ 236 (265)
T PRK10575 230 GTPAELM 236 (265)
T ss_pred cCHHHhc
Confidence 9988764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=319.16 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=162.1
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|.. .++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 6 ~~i~~~~l~~~~~~------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (225)
T PRK10247 6 PLLQLQNVGYLAGD------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79 (225)
T ss_pred ceEEEeccEEeeCC------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHH
Confidence 46889999999852 2359999999999999999999999999999999999999999998876
Q ss_pred --eEEEEcCCCCCCCccHHHHHhcCCC-----CChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHH
Q 000521 669 --SIAYVPQVPWILSGTIRDNILFGKN-----YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 669 --~i~yv~Q~p~l~~~ti~~nI~~g~~-----~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lA 741 (1446)
.++|++|+|++++.|++||+.++.. .++++..+.++.+++.. +.......+||||||||++||
T Consensus 80 ~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred HhccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHH
Confidence 3899999999998999999986421 12233445555555532 223556779999999999999
Q ss_pred HHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhhCCEEEEEe-CCEEEEecChh
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISAADMVVVMD-KGQVKWIGSSA 814 (1446)
Q Consensus 742 Raly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~ad~i~~l~-~G~i~~~g~~~ 814 (1446)
||++++|+++||||||++||+.+.+.+.+. +.... .+++|+|++||+.+.++.||++++|+ ++..+++|+|+
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 150 RNLQFMPKVLLLDEITSALDESNKHNVNEI-IHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999998887765 33211 23789999999999998899999995 56666677664
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=322.50 Aligned_cols=197 Identities=21% Similarity=0.313 Sum_probs=164.4
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 i~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 3 LYLEGLSVSFDG------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred EEEEeeEEEcCC------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHh
Confidence 678999998852 2359999999999999999999999999999999999999999999875
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCCCC---------------hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 669 -SIAYVPQVPWILSG-TIRDNILFGKNYD---------------PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~-ti~~nI~~g~~~~---------------~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
.++|++|++.++++ |++||+.++...+ +++.++.++..+++ ........+||
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 145 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-----------DEADRLAGLLS 145 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-----------hhhcCChhhCC
Confidence 38999999999886 9999998753211 12233334433332 23455667899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
||||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.
T Consensus 146 ~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~ 223 (242)
T TIGR03411 146 HGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAEL-LKS-LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAE 223 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHH-HHH-HhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEee
Confidence 9999999999999999999999999999999999988875 332 3446899999999999875 999999999999999
Q ss_pred cChhHHH
Q 000521 811 GSSADLA 817 (1446)
Q Consensus 811 g~~~~l~ 817 (1446)
|+++++.
T Consensus 224 ~~~~~~~ 230 (242)
T TIGR03411 224 GSLDQVQ 230 (242)
T ss_pred CCHHHHh
Confidence 9988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=323.14 Aligned_cols=202 Identities=26% Similarity=0.353 Sum_probs=166.7
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------- 668 (1446)
.++++|+++.|.. . ++++|+||+|++||+++|+||||||||||+++|.|..++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 76 (250)
T PRK14240 3 KISVKDLDLFYGD---F---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD 76 (250)
T ss_pred eEEEEEEEEEECC---c---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4789999999852 2 359999999999999999999999999999999998763 689998865
Q ss_pred --------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 --------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.+++.|++||+.++... + +++..++++.+++..++. ...+..+.+|||
T Consensus 77 ~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~ 149 (250)
T PRK14240 77 IDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSG 149 (250)
T ss_pred cchHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCH
Confidence 38999999999889999999876321 1 123344555555543332 234567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 150 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL-IQE-LKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988765 433 3457899999999998765 9999999999999999
Q ss_pred ChhHHH
Q 000521 812 SSADLA 817 (1446)
Q Consensus 812 ~~~~l~ 817 (1446)
+.+++.
T Consensus 228 ~~~~~~ 233 (250)
T PRK14240 228 DTVDLF 233 (250)
T ss_pred CHHHHH
Confidence 988874
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=356.01 Aligned_cols=209 Identities=18% Similarity=0.208 Sum_probs=176.4
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcceE
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i~ 1297 (1446)
.|+++|++++|+. ..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++...+...+|++++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 3899999999964 35999999999999999999999999999999999999999999999999988777777888899
Q ss_pred EEeCCCCC--C-------CCcHHHhcCCCCCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHh
Q 000521 1298 VVPQSPFL--F-------EGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368 (1446)
Q Consensus 1298 ~VpQdp~l--F-------~gTIR~NLdp~~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARAL 1368 (1446)
++||+|.+ + .-|+++|+.... ..++++.++++.. |++.........||||||||++|||||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---------~l~~~~~~~~~~LSgG~~qrv~la~al 150 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQF---------GITALLDRRFKYLSTGETRKTLLCQAL 150 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHc---------CCHhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999753 2 348899875421 1223444455544 444434445567999999999999999
Q ss_pred ccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1369 LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1369 Lr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+++|++|+|||||++||+++.+.+.+.|++.. +++|||+|+|+++.+.+ ||+|++|++|++++.|.+...
T Consensus 151 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 151 MSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999998763 37899999999999876 899999999999998877643
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=372.62 Aligned_cols=209 Identities=23% Similarity=0.266 Sum_probs=151.1
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHH---------HHhcCCCCCC----c----eEEEc
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILN---------ALFRLTPICG----G----QILVD 1280 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~---------~L~rl~~~~~----G----~I~ID 1280 (1446)
.++++|++. ..|+|+|++|++||.+||.|+||||||||++ .|.|...+.. + -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 578888762 3799999999999999999999999999999 4445332211 1 24666
Q ss_pred CeeCCCCCh----H------hHh---------cce-----EEEeCC------------------C---------------
Q 000521 1281 GLNIINTPV----R------DLR---------GRF-----AVVPQS------------------P--------------- 1303 (1446)
Q Consensus 1281 G~di~~i~~----~------~lR---------~~i-----~~VpQd------------------p--------------- 1303 (1446)
-.+|..-+. . ++| ++. .+..|. |
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 655543222 1 444 111 112221 0
Q ss_pred -----CCCCC-cHHHhcCCCCC-----C-ChHHHHHHHHHccHHHHHHhCCCchh-hhcCCCCCChhHHHHHHHHHHhc-
Q 000521 1304 -----FLFEG-SLRDNLDPFHM-----N-DDLKIWSVLEKCHVKEEVEAVGLETF-VKESGISFSVGQRQLICLARALL- 1369 (1446)
Q Consensus 1304 -----~lF~g-TIR~NLdp~~~-----~-~d~ei~~aL~~~~L~~~i~~lgLdt~-v~e~G~~LSgGQrQrl~LARALL- 1369 (1446)
+.+.+ ||.|||++... . +.+++.+.+ +.++.+||+.. .+....+||||||||++|||||+
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~ 826 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLA 826 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhh
Confidence 13333 77777765321 0 112222222 13344588765 67788899999999999999998
Q ss_pred --cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEe------CCEEEEEeccchhh
Q 000521 1370 --KSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILD------HGHLVCISFICRYF 1439 (1446)
Q Consensus 1370 --r~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~------~G~vvE~~~~~~~~ 1439 (1446)
++|++|||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++|+ +|++++.|+|..+.
T Consensus 827 ~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 827 PSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 5999999999999999999999999998764 4889999999999998899999996 79999999998764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=301.67 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=168.9
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++..|.. ..+|++|||++++||+++++|+||+||||||++|.|..++.+|+|.++|
T Consensus 4 L~v~~l~~~YG~------~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r 77 (237)
T COG0410 4 LEVENLSAGYGK------IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77 (237)
T ss_pred eeEEeEeecccc------eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHh
Confidence 567888887753 2359999999999999999999999999999999999999999999987
Q ss_pred -eEEEEcCCCCCCCc-cHHHHHhcCCCCChh-hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHc
Q 000521 669 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQ-SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1446)
Q Consensus 669 -~i~yv~Q~p~l~~~-ti~~nI~~g~~~~~~-~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly 745 (1446)
.|+||||.-.+|.. ||+||+..|....+. ...+. .++.-.+.+|. .......++.+|||||||-+||||||.
T Consensus 78 ~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 78 LGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred CCeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 49999999999976 999999987433221 11110 02233444553 234467889999999999999999999
Q ss_pred cCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-C-CceEEEEccCcch-hhhCCEEEEEeCCEEEEecChhHHHhc
Q 000521 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-L-QKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 746 ~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~-~~t~ilvth~~~~-l~~ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
++|++|+||||+.+|-|...+.|++. +.. +. + +.||++|.++... ++.||+.|+|++|+|+..|+.+|+..+
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~-i~~-l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEA-IKE-LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHH-HHH-HHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999987 333 33 2 5699999999987 556999999999999999999998653
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=363.12 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=168.5
Q ss_pred CcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEcCeeCCCCChHhHhcceEEEeCCCCCCCC-c
Q 000521 1233 PAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-S 1309 (1446)
Q Consensus 1233 ~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~--~G~I~IDG~di~~i~~~~lR~~i~~VpQdp~lF~g-T 1309 (1446)
..+|+|+|+++++||++||+||||||||||+++|.|+.+|. +|+|.+||.++. ...+++++||||++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 899999999874 2456789999999999975 9
Q ss_pred HHHhcCCCC------CCChHHHHHHHHHccHHHHHHhCCC----chhhhcC-CCCCChhHHHHHHHHHHhccCCCEEEEe
Q 000521 1310 LRDNLDPFH------MNDDLKIWSVLEKCHVKEEVEAVGL----ETFVKES-GISFSVGQRQLICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1310 IR~NLdp~~------~~~d~ei~~aL~~~~L~~~i~~lgL----dt~v~e~-G~~LSgGQrQrl~LARALLr~~~ILlLD 1378 (1446)
+|||+.+.. ..++++..+. ..+.++.+|| ||.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999996421 1233332211 2234444444 6777653 5679999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchh-H-hhcCEEEEEeCCEEEEEeccchhhhhh
Q 000521 1379 ECTANVDAQTASILQNAISSEC-KGMTVITIAHRIST-V-LNMDEILILDHGHLVCISFICRYFIFL 1442 (1446)
Q Consensus 1379 EaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~t-i-~~~DrIlvl~~G~vvE~~~~~~~~~~~ 1442 (1446)
|||++||..+...+.+.|++.. +++|||+++|+++. + ..||+|++|++|++++.|.+.....|+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f 298 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYF 298 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHH
Confidence 9999999999999999998764 58999999999984 4 568999999999999999998887774
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=284.88 Aligned_cols=209 Identities=26% Similarity=0.344 Sum_probs=174.9
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChH---hH
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVR---DL 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~---~l 1292 (1446)
.|+.++++..-+.. .-.+|++|+|.|++||.+||||+||||||||+..|.|+-+|++|+|.+.|.++.+++-+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888887776543 33689999999999999999999999999999999999999999999999999988855 45
Q ss_pred h-cceEEEeCCCCCCCC-cHHHhcC-CC---CCCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHH
Q 000521 1293 R-GRFAVVPQSPFLFEG-SLRDNLD-PF---HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLAR 1366 (1446)
Q Consensus 1293 R-~~i~~VpQdp~lF~g-TIR~NLd-p~---~~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LAR 1366 (1446)
| +++++|.|.-.|.+. |--||.. |. ++...+. +....+.++..||...+.--..+|||||+||++|||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~------~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADS------RAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccH------HHHHHHHHHHhCcccccccCccccCchHHHHHHHHH
Confidence 5 579999999988764 8899974 32 2211111 111223344457777788778899999999999999
Q ss_pred HhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCcEEEEeccCchhHhhcCEEEEEeCCEEEEE
Q 000521 1367 ALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVCI 1432 (1446)
Q Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~--~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~ 1432 (1446)
|+.-+|+||+-||||-|||.+|.+.|-+.+-+.- .+.|.++|||+......|||++-|.+|+++|.
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 9999999999999999999999999999886543 48899999999999999999999999999863
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=363.57 Aligned_cols=215 Identities=24% Similarity=0.345 Sum_probs=185.2
Q ss_pred cEEEEEEEEEecCC--CCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH---
Q 000521 1218 LIEFQNVTMRYKPS--LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL--- 1292 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~--~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l--- 1292 (1446)
.++++|++++|+.+ .+++|+|+||+|++||+++|+|++|||||||+++|.|+++|++|+|.+||.++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999999999999999999887664
Q ss_pred -hcceEEEeCCCCCCCC-cHHHhcCCCC---CCChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHH
Q 000521 1293 -RGRFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1293 -R~~i~~VpQdp~lF~g-TIR~NLdp~~---~~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARA 1367 (1446)
|++++|+||+|.+|++ |+.||++... ..+.++ .+....+.++.+|++..+.....+||+|||||++||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAra 158 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARA 158 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHH
Confidence 6789999999999975 9999997421 111111 11123445555677777777778999999999999999
Q ss_pred hccCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEEeCCEEEEEeccch
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1368 LLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl~~G~vvE~~~~~~ 1437 (1446)
++++|++|+|||||++||.++.+.+.+.|++.. +++|+|+|+|+++.+..|||+++|++|+++|.|++..
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 229 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQE 229 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccc
Confidence 999999999999999999999999999998764 4899999999999998999999999999999998764
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.66 Aligned_cols=201 Identities=28% Similarity=0.405 Sum_probs=167.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|+.. ..+|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~~-----~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (277)
T PRK13652 3 LIETRDLCYSYSGS-----KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVR 77 (277)
T ss_pred eEEEEEEEEEeCCC-----CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 36789999998532 2359999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCC---CCChh----hHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 -SIAYVPQVPW--ILSGTIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 -~i~yv~Q~p~--l~~~ti~~nI~~g~---~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.++||+|+|. +++.|++||+.++. .++++ ++++.++.+++.... ......||||||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrl 146 (277)
T PRK13652 78 KFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR-----------DRVPHHLSGGEKKRV 146 (277)
T ss_pred hheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCCcccCCHHHHHHH
Confidence 3899999983 67789999998753 23332 345666666665433 334468999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhh-hCCEEEEEeCCEEEEecChhHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g~~~~l 816 (1446)
+||||++.+|+++||||||++||+.+.+.+.+. +..... ++.|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~laraL~~~p~llilDEPt~gLD~~~~~~l~~~-l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 147 AIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF-LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999988775 332122 3789999999999985 5999999999999999999988
Q ss_pred Hh
Q 000521 817 AV 818 (1446)
Q Consensus 817 ~~ 818 (1446)
..
T Consensus 226 ~~ 227 (277)
T PRK13652 226 FL 227 (277)
T ss_pred hc
Confidence 64
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=332.90 Aligned_cols=210 Identities=22% Similarity=0.300 Sum_probs=169.5
Q ss_pred CceEEEEecEEEecCCCc-------ccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC---
Q 000521 599 DMAVIMQDATCSWYCNNE-------EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668 (1446)
Q Consensus 599 ~~~i~~~~~~f~w~~~~~-------~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--- 668 (1446)
+..++++|++.+|..... .....+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 346889999998863211 0113479999999999999999999999999999999999999999998865
Q ss_pred -------------eEEEEcCCC--CCC-CccHHHHHhcCC-----CCChh----hHHHHHHHhcchHHHhhccCCCcccc
Q 000521 669 -------------SIAYVPQVP--WIL-SGTIRDNILFGK-----NYDPQ----SYSETLKACTLDVDISLMVGGDMAYI 723 (1446)
Q Consensus 669 -------------~i~yv~Q~p--~l~-~~ti~~nI~~g~-----~~~~~----~~~~v~~~~~l~~di~~~~~gd~t~i 723 (1446)
+|+||+|+| .++ ..||.|||.++. ..+++ +..+.++..++..+ ..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~ 155 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LI 155 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hh
Confidence 499999999 355 469999997531 23322 33455666666332 13
Q ss_pred cCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcc-cCCceEEEEccCcchhhh-CCEEEE
Q 000521 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH-MLQKTRILCTHNVQAISA-ADMVVV 801 (1446)
Q Consensus 724 g~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~-~~~~t~ilvth~~~~l~~-ad~i~~ 801 (1446)
.....+|||||||||+||||++.+|+++|+||||++||+.+.+++++. +.... ..+.|+|+|||+++.+.. ||+|++
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~l-L~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL-LQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 455678999999999999999999999999999999999999999876 33311 237899999999999876 999999
Q ss_pred EeCCEEEEecChhHHHhc
Q 000521 802 MDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 802 l~~G~i~~~g~~~~l~~~ 819 (1446)
|++|+|++.|+.+++..+
T Consensus 235 l~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHN 252 (331)
T ss_pred EECCEEEEEcCHHHHHcC
Confidence 999999999999998654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=327.34 Aligned_cols=204 Identities=26% Similarity=0.347 Sum_probs=168.9
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|+.... .++|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~---~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVFKYEKESD---VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEEEcCCCCc---CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 4789999999964211 2369999999999999999999999999999999999999999999876
Q ss_pred -eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHH
Q 000521 669 -SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738 (1446)
Q Consensus 669 -~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi 738 (1446)
.++|++|+|. +++.|+.|||.++.. ... ++++++++.+++.... ......||||||||+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv 149 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFK-----------TREPARLSGGQKQRV 149 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHH
Confidence 3899999984 667899999987521 222 2345566666664322 234568999999999
Q ss_pred HHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHHH
Q 000521 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817 (1446)
Q Consensus 739 ~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l~ 817 (1446)
+||||++.+|+++||||||++||+.+.+.+.+. +..... .|.|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 150 AVAGIIALRPEIIILDESTSMLDPTGRQEIMRV-IHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999988875 332122 278999999999998889999999999999999998876
Q ss_pred hc
Q 000521 818 VS 819 (1446)
Q Consensus 818 ~~ 819 (1446)
..
T Consensus 229 ~~ 230 (277)
T PRK13642 229 AT 230 (277)
T ss_pred cC
Confidence 43
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=326.42 Aligned_cols=205 Identities=26% Similarity=0.368 Sum_probs=169.3
Q ss_pred CCceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC----
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG---- 668 (1446)
Q Consensus 598 ~~~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~---- 668 (1446)
....++++|+++.|.. . ++|+|+||++++||+++|+|+||||||||+++|+|.+++ ++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---K---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCcEEEEEEEEEEECC---e---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 3456899999999852 2 359999999999999999999999999999999999874 899998754
Q ss_pred -----------eEEEEcCCCCCCCccHHHHHhcCCCC----C----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCc
Q 000521 669 -----------SIAYVPQVPWILSGTIRDNILFGKNY----D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVN 729 (1446)
Q Consensus 669 -----------~i~yv~Q~p~l~~~ti~~nI~~g~~~----~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~ 729 (1446)
.++|++|++.+++.|++||+.++... . +++..++++..++..++. +..+..+.+
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~ 168 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFG 168 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCccc
Confidence 48999999999988999999875321 1 123445555555544332 234667889
Q ss_pred cchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEE
Q 000521 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVK 808 (1446)
Q Consensus 730 LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~ 808 (1446)
||||||||++||||++.+|++++|||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+. .||+|++|++|+++
T Consensus 169 LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~-L~~-~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~ 246 (272)
T PRK14236 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEEL-ITE-LKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLV 246 (272)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHH-HHH-HHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999998888775 333 344689999999999876 49999999999999
Q ss_pred EecChhHHH
Q 000521 809 WIGSSADLA 817 (1446)
Q Consensus 809 ~~g~~~~l~ 817 (1446)
+.|+++++.
T Consensus 247 ~~g~~~~~~ 255 (272)
T PRK14236 247 EYGDTDTLF 255 (272)
T ss_pred ecCCHHHHh
Confidence 999988874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=306.93 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=184.0
Q ss_pred EEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhH-hcceE
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL-RGRFA 1297 (1446)
Q Consensus 1219 I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~l-R~~i~ 1297 (1446)
++.+|++.+|.. -.+++||||++++||.+|++||+||||||+++++.|+|+|++|+|.++|.||..++.+.. |.-|+
T Consensus 5 L~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 678999999964 369999999999999999999999999999999999999999999999999999998875 44588
Q ss_pred EEeCCCCCCCC-cHHHhcCCCCCC------------ChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHH
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHMN------------DDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICL 1364 (1446)
Q Consensus 1298 ~VpQdp~lF~g-TIR~NLdp~~~~------------~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~L 1364 (1446)
--.|.+-+|++ |+-||+.-.... ...+-.++.+++ .+.++..||+..-++...+||+||++|+-|
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A--~~~Le~vgL~~~a~~~A~~LsyG~qR~LEI 160 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERA--RELLEFVGLGELADRPAGNLSYGQQRRLEI 160 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHH--HHHHHHcCCchhhcchhhcCChhHhHHHHH
Confidence 88999999987 999998532110 000112222222 334445588888888888999999999999
Q ss_pred HHHhccCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~--~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
||||..+|++|+||||.++|.++-...+.+.|++..+ +.|+++|-|+++.+++ ||||+||+.|+++..|+|+..
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999988888899988764 5899999999999987 899999999999999999864
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=324.38 Aligned_cols=202 Identities=25% Similarity=0.313 Sum_probs=166.2
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|+. . .+|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGE---H---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECC---E---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccc
Confidence 35889999999852 2 359999999999999999999999999999999999999999998765
Q ss_pred ---------------eEEEEcCCCCCCCc-cHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCccccc
Q 000521 669 ---------------SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIG 724 (1446)
Q Consensus 669 ---------------~i~yv~Q~p~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig 724 (1446)
.++|++|+|.++.. |++||+.++. ..++ ++..+.++..++...+ .+
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~ 147 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QG 147 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hh
Confidence 38999999998875 9999997642 1221 2334444444443221 14
Q ss_pred CCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEe
Q 000521 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 803 (1446)
Q Consensus 725 ~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~ 803 (1446)
....+||||||||++||||++++|+++||||||++||+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|+
T Consensus 148 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~ 226 (257)
T PRK10619 148 KYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 226 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 45678999999999999999999999999999999999999988875 33312347899999999999886 99999999
Q ss_pred CCEEEEecChhHHHh
Q 000521 804 KGQVKWIGSSADLAV 818 (1446)
Q Consensus 804 ~G~i~~~g~~~~l~~ 818 (1446)
+|++++.|+++++..
T Consensus 227 ~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 227 QGKIEEEGAPEQLFG 241 (257)
T ss_pred CCEEEEeCCHHHhhh
Confidence 999999999888753
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.77 Aligned_cols=203 Identities=26% Similarity=0.347 Sum_probs=165.6
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------- 668 (1446)
.++++|+++.|.. .++++|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQ------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECC------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence 4788999998852 2359999999999999999999999999999999999974 799998875
Q ss_pred ------eEEEEcCCCCCC-CccHHHHHhcCCCC-----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 ------SIAYVPQVPWIL-SGTIRDNILFGKNY-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 ------~i~yv~Q~p~l~-~~ti~~nI~~g~~~-----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.|||++|+|.++ +.|++||+.++... +. ++..+.++.+++...+. ........+|||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 149 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSG 149 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCH
Confidence 489999999755 57999999875321 11 23345556665543221 123455678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhh-hCCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~-~ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||+..+|++++|||||++||+.+.+++.+. +.. +.+++|+|++||+++.+. .||++++|++|++.+.|
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~-l~~-~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL-FLE-LKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999999988876 333 345789999999999976 59999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+++++..
T Consensus 228 ~~~~~~~ 234 (250)
T PRK14247 228 PTREVFT 234 (250)
T ss_pred CHHHHHc
Confidence 9888753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=321.03 Aligned_cols=197 Identities=28% Similarity=0.421 Sum_probs=161.9
Q ss_pred EEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--------------
Q 000521 603 IMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------- 668 (1446)
Q Consensus 603 ~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-------------- 668 (1446)
+++|+++.|+. .++|+|+||++++||+++|+|+||||||||+++|.|.++|++|+|.++|
T Consensus 2 ~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (230)
T TIGR03410 2 EVSNLNVYYGQ------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75 (230)
T ss_pred EEEeEEEEeCC------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHh
Confidence 57899998852 2359999999999999999999999999999999999999999999875
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCCC-C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKNY-D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~~-~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARa 743 (1446)
.++|++|++.+++. |++||+.++... . .+.++++++..+. ..........+||||||||++||||
T Consensus 76 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred CeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHH
Confidence 38999999998876 999999875321 1 1223334433321 1122355667899999999999999
Q ss_pred HccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHH
Q 000521 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 744 ly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l 816 (1446)
++.+|++++|||||++||+.+.+++.+. +..... .++|+|++||+++.+.. ||+|+++++|++++.|+.+++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRV-IRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHH-HHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999988875 332122 37899999999999885 999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=301.51 Aligned_cols=161 Identities=25% Similarity=0.393 Sum_probs=144.1
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC--eEEEEcCCCCC
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--SIAYVPQVPWI 679 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~--~i~yv~Q~p~l 679 (1446)
++++|+++.|+.. +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+++ .++|++|+|.+
T Consensus 1 i~~~~~~~~~~~~-----~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~ 75 (166)
T cd03223 1 IELENLSLATPDG-----RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL 75 (166)
T ss_pred CEEEEEEEEcCCC-----CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc
Confidence 3578999988532 2359999999999999999999999999999999999999999999987 79999999999
Q ss_pred CCccHHHHHhcCCCCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCccc
Q 000521 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSA 759 (1446)
Q Consensus 680 ~~~ti~~nI~~g~~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~ 759 (1446)
++.|++||+.++ ....||||||||++||||++++|++++|||||++
T Consensus 76 ~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~ 121 (166)
T cd03223 76 PLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA 121 (166)
T ss_pred ccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 989999999864 2468999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeCC
Q 000521 760 VDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKG 805 (1446)
Q Consensus 760 lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~G 805 (1446)
||+.+.+.+.+. +.. . ++|+|++||+.+....||++++|++|
T Consensus 122 LD~~~~~~l~~~-l~~-~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 122 LDEESEDRLYQL-LKE-L--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred cCHHHHHHHHHH-HHH-h--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999988876 332 2 58999999999988789999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=382.72 Aligned_cols=216 Identities=24% Similarity=0.325 Sum_probs=185.5
Q ss_pred ccEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEcCeeCCCCChHhHhcce
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~lR~~i 1296 (1446)
..|+++|++++|+++...+|+|+||++++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.. +....|+++
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3699999999996434579999999999999999999999999999999999999999999999999975 567789999
Q ss_pred EEEeCCCCCCCC-cHHHhcCCCCC---CChHHHHHHHHHccHHHHHHhCCCchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~VpQdp~lF~g-TIR~NLdp~~~---~~d~ei~~aL~~~~L~~~i~~lgLdt~v~e~G~~LSgGQrQrl~LARALLr~~ 1372 (1446)
+++||++.+|+. |++|||.++.. .+.++.++ ...+.++.+||+........+||||||||++|||||+.+|
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~P 1080 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDA 1080 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999999999975 99999975421 12222211 1223444446666666667789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCcEEEEeccCchhHhh-cCEEEEEeCCEEEEEeccchh
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1373 ~ILlLDEaTS~lD~~Te~~Iq~~I~~~~~~~TvI~IaHrl~ti~~-~DrIlvl~~G~vvE~~~~~~~ 1438 (1446)
+||+||||||+||+.+.+.+.+.|++..+++|||++||+++.+.. ||||++|++|++++.|++..+
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999988779999999999999875 899999999999999988743
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=317.63 Aligned_cols=196 Identities=25% Similarity=0.303 Sum_probs=160.8
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|++++|+.... ..++++|+||++++||+++|+||||||||||+++|.|.++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 6 IVEVHHLKKSVGQGEH--ELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred eEEEeeeEEEccCCCc--ceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 5789999999864211 12359999999999999999999999999999999999999999998764
Q ss_pred -----eEEEEcCCCCCCCc-cHHHHHhcCC---CCC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHH
Q 000521 669 -----SIAYVPQVPWILSG-TIRDNILFGK---NYD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 -----~i~yv~Q~p~l~~~-ti~~nI~~g~---~~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQk 735 (1446)
.++|++|+|.++.. |++||+.++. ..+ +++.++.++.+++.+.+. ....+||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Ge~ 152 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-----------HLPAQLSGGEQ 152 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHH
Confidence 38999999988875 9999997642 111 234566677776654333 33458999999
Q ss_pred HHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEe
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWI 810 (1446)
Q Consensus 736 qRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~ 810 (1446)
||++||||++.+|+++||||||++||+.+.+.+.+. +..... .++|+|++||+++.+..||++++|++|+++++
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~-l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL-LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999888876 332112 37899999999999888999999999998753
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=333.27 Aligned_cols=187 Identities=24% Similarity=0.342 Sum_probs=158.9
Q ss_pred ccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------eEEEEcCCCCCCCc-cHHHH
Q 000521 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------SIAYVPQVPWILSG-TIRDN 687 (1446)
Q Consensus 621 ~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------~i~yv~Q~p~l~~~-ti~~n 687 (1446)
++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++| .+||++|++.++.. |++||
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 359999999999999999999999999999999999999999999876 38999999998875 99999
Q ss_pred HhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcccc
Q 000521 688 ILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV 760 (1446)
Q Consensus 688 I~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s~l 760 (1446)
+.+... .+ .++.+++++.+++.... .....+||||||||++||||++++|++++|||||++|
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAA-----------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 986321 11 23456667777665432 3345689999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHhc
Q 000521 761 DAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 761 D~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~~ 819 (1446)
|+.+.+.+.+. +.....+|+|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus 156 D~~~~~~l~~~-l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDY-IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHH-HHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999988875 33312357899999999999875 999999999999999999998654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.82 Aligned_cols=204 Identities=25% Similarity=0.332 Sum_probs=169.2
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG------ 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~------ 668 (1446)
..++++|++++|.. . ++|+|+||+|++||+++|+|+||||||||+++|+|.++ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 82 (264)
T PRK14243 9 TVLRTENLNVYYGS---F---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAP 82 (264)
T ss_pred eEEEEeeeEEEECC---E---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccc
Confidence 36899999999852 2 35999999999999999999999999999999999876 4799998765
Q ss_pred ---------eEEEEcCCCCCCCccHHHHHhcCCCC---C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 ---------SIAYVPQVPWILSGTIRDNILFGKNY---D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 ---------~i~yv~Q~p~l~~~ti~~nI~~g~~~---~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.++|++|+|.+++.|++||+.++... . +++..++++.+++..++.. ..+..+.+||||
T Consensus 83 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgG 155 (264)
T PRK14243 83 DVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGG 155 (264)
T ss_pred ccChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHH
Confidence 38999999999988999999876431 1 1334455666666544431 235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEe---------
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD--------- 803 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~--------- 803 (1446)
||||++||||++.+|+++||||||++||+.+.+++.+. +.. +.+++|+|++||+++.+.. ||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~-~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEEL-MHE-LKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCEEEEEecCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999988875 333 3446899999999998765 99999998
Q ss_pred CCEEEEecChhHHHh
Q 000521 804 KGQVKWIGSSADLAV 818 (1446)
Q Consensus 804 ~G~i~~~g~~~~l~~ 818 (1446)
+|++++.|+.+|+..
T Consensus 234 ~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 234 YGYLVEFDRTEKIFN 248 (264)
T ss_pred CceEEEeCCHHHHHh
Confidence 799999999988854
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=316.47 Aligned_cols=197 Identities=27% Similarity=0.403 Sum_probs=164.3
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------eE
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~-----------~i 670 (1446)
++++|++++|+. . ..|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 l~~~~l~~~~~~-----~---~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 2 LKLTDITWLYHH-----L---PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred eEEEEEEEEECC-----c---cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 578999999852 1 2489999999999999999999999999999999999999999876 38
Q ss_pred EEEcCCCCCCCc-cHHHHHhcCCC--C--C---hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHH
Q 000521 671 AYVPQVPWILSG-TIRDNILFGKN--Y--D---PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 671 ~yv~Q~p~l~~~-ti~~nI~~g~~--~--~---~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lAR 742 (1446)
+|++|+|.++.+ |++||+.++.. . . +++..++++..+++..+.. ....||||||||++|||
T Consensus 74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar 142 (232)
T PRK10771 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR-----------LPGQLSGGQRQRVALAR 142 (232)
T ss_pred EEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhC-----------CcccCCHHHHHHHHHHH
Confidence 999999998875 99999987531 1 1 2345566676666544433 33589999999999999
Q ss_pred HHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhHHHh
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 743 aly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~l~~ 818 (1446)
|++++|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+.. ||++++|++|++.+.|+++++..
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~-l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTL-VSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999888875 332122 37899999999999875 99999999999999999888754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=318.00 Aligned_cols=188 Identities=23% Similarity=0.400 Sum_probs=155.5
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|+.+ ..+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~l~~~~~~~-----~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (214)
T TIGR02673 2 IEFHNVSKAYPGG-----VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPL 76 (214)
T ss_pred EEEEeeeEEeCCC-----ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence 5788999998421 2359999999999999999999999999999999999999999998765
Q ss_pred ---eEEEEcCCCCCCC-ccHHHHHhcCCC---CC----hhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 ---SIAYVPQVPWILS-GTIRDNILFGKN---YD----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~i~yv~Q~p~l~~-~ti~~nI~~g~~---~~----~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|.++. .|++||+.++.. .+ +++.++.++..++..... ....+||||||||
T Consensus 77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr 145 (214)
T TIGR02673 77 LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-----------AFPEQLSGGEQQR 145 (214)
T ss_pred HHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 3899999999886 599999987521 22 234556666666654333 2345899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCE
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQ 806 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~ 806 (1446)
++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDL-LKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999988876 33212347899999999999876 99999999984
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=325.34 Aligned_cols=203 Identities=25% Similarity=0.382 Sum_probs=166.8
Q ss_pred ceEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~----------- 668 (1446)
..++++|+++.|+.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~i~~l~~~~~~~----~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~ 81 (269)
T PRK13648 6 SIIVFKNVSFQYQSD----ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL 81 (269)
T ss_pred ceEEEEEEEEEcCCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 358899999998632 12359999999999999999999999999999999999999999999976
Q ss_pred --eEEEEcCCCC--CCCccHHHHHhcCCC---CCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHH
Q 000521 669 --SIAYVPQVPW--ILSGTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 --~i~yv~Q~p~--l~~~ti~~nI~~g~~---~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqR 737 (1446)
.++|++|+|+ +++.|+++|+.++.. ... ++.+++++..++... ......+||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr 150 (269)
T PRK13648 82 RKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQR 150 (269)
T ss_pred HhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHH
Confidence 3899999996 445699999988632 222 223344555554432 234567899999999
Q ss_pred HHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCccc-CCceEEEEccCcchhhhCCEEEEEeCCEEEEecChhHH
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 738 i~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~-~~~t~ilvth~~~~l~~ad~i~~l~~G~i~~~g~~~~l 816 (1446)
++||||++.+|+++||||||++||+.+.+.+.+. +..... +++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~-L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 229 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDL-VRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH-HHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999988875 333122 37899999999999888999999999999999999887
Q ss_pred Hh
Q 000521 817 AV 818 (1446)
Q Consensus 817 ~~ 818 (1446)
..
T Consensus 230 ~~ 231 (269)
T PRK13648 230 FD 231 (269)
T ss_pred hc
Confidence 54
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.99 Aligned_cols=198 Identities=24% Similarity=0.402 Sum_probs=165.0
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|++++|+. +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 l~~~~l~~~~~~------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 3 LRTENLTVGYGT------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEEEeEEEEECC------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhh
Confidence 678999999852 2359999999999999999999999999999999999999999999876
Q ss_pred eEEEEcCCCCCCCc-cHHHHHhcCCC-----C------ChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHH
Q 000521 669 SIAYVPQVPWILSG-TIRDNILFGKN-----Y------DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1446)
Q Consensus 669 ~i~yv~Q~p~l~~~-ti~~nI~~g~~-----~------~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkq 736 (1446)
.++|++|++.++.+ |++||+.++.. + +.++.+++++.++++.. .......|||||||
T Consensus 77 ~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~q 145 (255)
T PRK11231 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQ 145 (255)
T ss_pred heEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHH
Confidence 39999999988876 99999987631 1 12234455555555432 23456789999999
Q ss_pred HHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecChhH
Q 000521 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSAD 815 (1446)
Q Consensus 737 Ri~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~~~~ 815 (1446)
|++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++...|++++
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 224 (255)
T PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL-MRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEE 224 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHH
Confidence 99999999999999999999999999999988876 33212347899999999998765 99999999999999999887
Q ss_pred HH
Q 000521 816 LA 817 (1446)
Q Consensus 816 l~ 817 (1446)
+.
T Consensus 225 ~~ 226 (255)
T PRK11231 225 VM 226 (255)
T ss_pred hc
Confidence 64
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=355.98 Aligned_cols=214 Identities=24% Similarity=0.297 Sum_probs=145.7
Q ss_pred cEEEEEEEEEecCCCCcccceeeEEEeCCcEEEEECCCCCCHHHHHHHHh------cCCC----C-----------CCce
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF------RLTP----I-----------CGGQ 1276 (1446)
Q Consensus 1218 ~I~f~nVs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~------rl~~----~-----------~~G~ 1276 (1446)
.++++|++. ..|+|+||+|++||.+||+|+||||||||++-.+ ++.+ | -.--
T Consensus 612 ~l~l~~~~~-------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (924)
T TIGR00630 612 FLTLKGARE-------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKV 684 (924)
T ss_pred eEEEEeCcc-------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhcccccCCCCcCccccccCCCce
Confidence 488888862 2599999999999999999999999999998333 1111 1 1113
Q ss_pred EEEcCeeCCCCCh----------HhHhcceEEEeC------CCCCCCC--------------cHHHhcCCC---------
Q 000521 1277 ILVDGLNIINTPV----------RDLRGRFAVVPQ------SPFLFEG--------------SLRDNLDPF--------- 1317 (1446)
Q Consensus 1277 I~IDG~di~~i~~----------~~lR~~i~~VpQ------dp~lF~g--------------TIR~NLdp~--------- 1317 (1446)
|.||-.+|..-++ +.+|.-++=.|+ .+-.|+- .+.-++.+.
T Consensus 685 v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~ 764 (924)
T TIGR00630 685 IHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEV 764 (924)
T ss_pred EEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCC
Confidence 5666655543322 234555544443 1222321 111111100
Q ss_pred ---CCCChH---------HH--------HHHHHHc----c---HHHHHHhCCCch-hhhcCCCCCChhHHHHHHHHHHhc
Q 000521 1318 ---HMNDDL---------KI--------WSVLEKC----H---VKEEVEAVGLET-FVKESGISFSVGQRQLICLARALL 1369 (1446)
Q Consensus 1318 ---~~~~d~---------ei--------~~aL~~~----~---L~~~i~~lgLdt-~v~e~G~~LSgGQrQrl~LARALL 1369 (1446)
..+.++ .| .++++-. . ..+.++.+||+. .++.....||||||||++|||+|.
T Consensus 765 C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~ 844 (924)
T TIGR00630 765 CKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELS 844 (924)
T ss_pred cCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHh
Confidence 011111 01 1111111 1 112233347775 467778899999999999999999
Q ss_pred c---CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCcEEEEeccCchhHhhcCEEEEE------eCCEEEEEeccchh
Q 000521 1370 K---SSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL------DHGHLVCISFICRY 1438 (1446)
Q Consensus 1370 r---~~~ILlLDEaTS~lD~~Te~~Iq~~I~~~~-~~~TvI~IaHrl~ti~~~DrIlvl------~~G~vvE~~~~~~~ 1438 (1446)
+ +|+++||||||++||.++.+.+.+.|++.. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|..+
T Consensus 845 ~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 845 KRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 7 489999999999999999999999998764 488999999999999999999999 79999999998753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-31 Score=308.33 Aligned_cols=478 Identities=19% Similarity=0.223 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCChhHHH---HHHHhHHHHHHHHHH-HHH
Q 000521 318 AIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQ---TFMSVDTDRTVNLAN-SFH 393 (1446)
Q Consensus 318 ~~~l~~~~~~~~~~~~~~~~~~~r~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~g~i~---nlms~D~~~i~~~~~-~~~ 393 (1446)
+.-.+++..+.+.+.....|....+..+.|..+..-+|++=++-..-..-......|. .+++.|+++...... ...
T Consensus 125 ~~~~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s 204 (659)
T KOG0060|consen 125 LFKYVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYS 204 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHH
Confidence 3334445556667777788889999999999999999999887643322211222233 378899999887544 455
Q ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHcCc
Q 000521 394 DAWSLPFQIGVALYLLYTQVKFAFVSGLA-ITILLIPVNKWIANLIANATEKMMKQ-KDERIRRTGEILTHIRTLKMYGW 471 (1446)
Q Consensus 394 ~~~~~pl~i~i~~~lL~~~lg~a~l~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~-~d~R~~~~~e~L~~ik~IK~~g~ 471 (1446)
.+..+|+-++...|.++...||-..+.+. -+++-..++..+.+-+.+...++.+. -|=|. .-+++..|...|-+|+.
T Consensus 205 ~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy-~h~rlr~NaE~iAFY~g 283 (659)
T KOG0060|consen 205 NLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRY-KHSRLRVNAEEIAFYRG 283 (659)
T ss_pred hhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhh-heeeeeecchhhhhhcc
Confidence 67778888888889999988875544332 22223344444444444333332222 23333 33567778899999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhC---CCCCHhHHHHHH----HHHHHH
Q 000521 472 EQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFGLF---ALMG---HQLDAAMVFTCL----ALFNSL 541 (1446)
Q Consensus 472 e~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~~~---~~Lt~~~~ft~l----~l~~~l 541 (1446)
+......++..-+.-++.++......-+..++.+..-.+..++.+.+. .+.+ +.++++..+.-+ .++..+
T Consensus 284 ~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~L 363 (659)
T KOG0060|consen 284 GQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYL 363 (659)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHH
Confidence 877766666554555555544433332222222222222222211110 0112 357777766554 234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCc-----hhhh-h---hcCCCCcccCCCccCCCCCceEEEEecEEEe
Q 000521 542 ISPLNSFPWVINGLIDAFISIRRLTRFLGCS-EYK-----HELE-Q---AANSPSYISNGLSNFNSKDMAVIMQDATCSW 611 (1446)
Q Consensus 542 ~~pl~~l~~~i~~~~~a~~s~~RI~~fL~~~-e~~-----~~~~-~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~w 611 (1446)
...+..+...-..+.+--+-..||.++.+.- +.. ...+ . +.........|......++..|++++++++-
T Consensus 364 i~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~t 443 (659)
T KOG0060|consen 364 ISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLST 443 (659)
T ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecC
Confidence 5556666666666666666677888887421 000 0000 0 0000000011111223456889999999987
Q ss_pred cCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEe--C---eEEEEcCCCCCCCccHHH
Q 000521 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS--G---SIAYVPQVPWILSGTIRD 686 (1446)
Q Consensus 612 ~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~--~---~i~yv~Q~p~l~~~ti~~ 686 (1446)
|++ . ..+.+|+||+|+.|+-+.|+||||||||+|++.+.|..+..+|++... | .+-|+||.|....||.||
T Consensus 444 Pt~--g--~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRd 519 (659)
T KOG0060|consen 444 PTN--G--DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRD 519 (659)
T ss_pred CCC--C--ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhh
Confidence 654 1 235788999999999999999999999999999999999999999764 3 499999999999999999
Q ss_pred HHhcCC--------CCChhhHHHHHHHhcchHHHhhccCCCcccccCCCCccchHHHHHHHHHHHHccCCCEEEEcCCcc
Q 000521 687 NILFGK--------NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLS 758 (1446)
Q Consensus 687 nI~~g~--------~~~~~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGGQkqRi~lARaly~~~~illLDep~s 758 (1446)
-+.+.. ..++++..+.++-.+|.+-++...+=|+..+-+-...||+|+|||+|.||-+|++|++-+|||+||
T Consensus 520 QvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TS 599 (659)
T KOG0060|consen 520 QVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTS 599 (659)
T ss_pred eeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhh
Confidence 999872 235678889999999986665554334344566778999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhhCCEEEEEeC
Q 000521 759 AVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804 (1446)
Q Consensus 759 ~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~ad~i~~l~~ 804 (1446)
|+|.+++..+.+.| ...|.|.|-|.||.+.-+.-|.++-|+.
T Consensus 600 Av~~dvE~~~Yr~~----r~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 600 AVTEDVEGALYRKC----REMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hccHHHHHHHHHHH----HHcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999875 2357899999999999999999999975
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=323.56 Aligned_cols=202 Identities=22% Similarity=0.322 Sum_probs=165.1
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCcc-----CCCcEEEEeC--------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM-----LTHGSIHASG-------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~-----~~~G~i~~~~-------- 668 (1446)
-+++|+++.|.. +++|+|+||++++||+++|+|+||||||||+++|.|..+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~------~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLNLWYGS------KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEEEEECC------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 467899998852 235999999999999999999999999999999999986 4799998865
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCCC-----Ch----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 -------SIAYVPQVPWILSGTIRDNILFGKNY-----DP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 -------~i~yv~Q~p~l~~~ti~~nI~~g~~~-----~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.+++.|++||+.++... +. ++..++++..++..++. +..+..+.+|||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 152 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSG 152 (251)
T ss_pred chHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCH
Confidence 38999999999989999999875211 11 12334455555543221 234566789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~-l~~-~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL-IQE-LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999998888765 433 3457899999999999875 9999999999999999
Q ss_pred ChhHHHh
Q 000521 812 SSADLAV 818 (1446)
Q Consensus 812 ~~~~l~~ 818 (1446)
+++++..
T Consensus 231 ~~~~~~~ 237 (251)
T PRK14244 231 TTQEIFK 237 (251)
T ss_pred CHHHHhc
Confidence 9888753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=323.30 Aligned_cols=198 Identities=26% Similarity=0.343 Sum_probs=163.1
Q ss_pred EEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------- 668 (1446)
++++|+++.|.. .++|+|+||++++|++++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 4 l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (250)
T PRK11264 4 IEVKNLVKKFHG------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77 (250)
T ss_pred EEEeceEEEECC------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchh
Confidence 678999999852 2359999999999999999999999999999999999999999997653
Q ss_pred --------eEEEEcCCCCCCC-ccHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccc
Q 000521 669 --------SIAYVPQVPWILS-GTIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLS 731 (1446)
Q Consensus 669 --------~i~yv~Q~p~l~~-~ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LS 731 (1446)
.++|++|+|.+++ .|++||+.++. ..+. ++..+.++..++.. .......+||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS 146 (250)
T PRK11264 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRLS 146 (250)
T ss_pred hHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhCC
Confidence 3899999998886 59999997642 1221 22334444444432 2345677999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEe
Q 000521 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWI 810 (1446)
Q Consensus 732 GGQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~ 810 (1446)
||||||++||||+..+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 147 ~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~-l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~ 225 (250)
T PRK11264 147 GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNT-IRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQ 225 (250)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999988875 33212347899999999999865 999999999999999
Q ss_pred cChhHHH
Q 000521 811 GSSADLA 817 (1446)
Q Consensus 811 g~~~~l~ 817 (1446)
|+.+++.
T Consensus 226 ~~~~~~~ 232 (250)
T PRK11264 226 GPAKALF 232 (250)
T ss_pred CCHHHHh
Confidence 9988874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.55 Aligned_cols=202 Identities=22% Similarity=0.307 Sum_probs=166.3
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccC-----CCcEEEEeC-------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML-----THGSIHASG------- 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~-----~~G~i~~~~------- 668 (1446)
.++++|+++.|.. +++|+|+||++++||+++|+||||||||||+++|.|..+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 76 (249)
T PRK14253 3 KFNIENLDLFYGE------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76 (249)
T ss_pred eEEEeccEEEECC------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc
Confidence 4678999999852 2359999999999999999999999999999999999986 599998865
Q ss_pred -------eEEEEcCCCCCCCccHHHHHhcCCCC---C-h----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccchH
Q 000521 669 -------SIAYVPQVPWILSGTIRDNILFGKNY---D-P----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 -------~i~yv~Q~p~l~~~ti~~nI~~g~~~---~-~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSGG 733 (1446)
.++|++|+|.+++.|++||+.++... . + ++..+.++..++.+++. +.......+||||
T Consensus 77 ~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G 149 (249)
T PRK14253 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGG 149 (249)
T ss_pred chHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHH
Confidence 38999999999989999999875321 1 1 12334445555544332 2345667899999
Q ss_pred HHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEecC
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 734 QkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g~ 812 (1446)
|||||+||||++.+|+++||||||++||+.+.+.+.+. +.. +.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~-l~~-~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~ 227 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEEL-MEE-LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDD 227 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH-HHH-HhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999998888775 433 4456899999999999776 99999999999999999
Q ss_pred hhHHH
Q 000521 813 SADLA 817 (1446)
Q Consensus 813 ~~~l~ 817 (1446)
.+++.
T Consensus 228 ~~~~~ 232 (249)
T PRK14253 228 TQVIF 232 (249)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.13 Aligned_cols=198 Identities=25% Similarity=0.380 Sum_probs=162.4
Q ss_pred eEEEEecEEEecCCCcccccccceeeeeEeeCCcEEEEEcCCCCcHHHHHHHHhcCccCCCcEEEEeC------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~~f~w~~~~~~~~~~~l~~i~l~i~~G~~~~ivG~~GsGKStll~~llg~~~~~~G~i~~~~------------ 668 (1446)
.++++|+++.|.. +.+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGINCFYGA------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeEEEECC------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 3678999999852 2359999999999999999999999999999999999999999998864
Q ss_pred -------eEEEEcCCCCCCCc-cHHHHHhcCC----CCCh----hhHHHHHHHhcchHHHhhccCCCcccccCCCCccch
Q 000521 669 -------SIAYVPQVPWILSG-TIRDNILFGK----NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSG 732 (1446)
Q Consensus 669 -------~i~yv~Q~p~l~~~-ti~~nI~~g~----~~~~----~~~~~v~~~~~l~~di~~~~~gd~t~ig~~g~~LSG 732 (1446)
.++|++|+|.++.. |++|||.++. .... ++..+.++..+++. .......+|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~ 144 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKP-----------YADRFPLHLSG 144 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCH
Confidence 38999999998865 9999997421 1111 22344444444432 23445568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccccHHHHHHHHHHhhcCcccCCceEEEEccCcchhhh-CCEEEEEeCCEEEEec
Q 000521 733 GQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 733 GQkqRi~lARaly~~~~illLDep~s~lD~~~~~~i~~~~~~~~~~~~~t~ilvth~~~~l~~-ad~i~~l~~G~i~~~g 811 (1446)
|||||++||||++.+|+++||||||++||+.+.+.+.+. +.....+++|+|++||+.+.+.. ||++++|++|++++.|
T Consensus 145 G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~-l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSI-IRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHH-HHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999988875 33212347899999999999865 9999999999999999
Q ss_pred ChhHH
Q 000521 812 SSADL 816 (1446)
Q Consensus 812 ~~~~l 816 (1446)
+++++
T Consensus 224 ~~~~~ 228 (242)
T PRK11124 224 DASCF 228 (242)
T ss_pred CHHHh
Confidence 88765
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1446 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-41 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-17 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-39 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 6e-37 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-31 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-36 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-35 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-34 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-33 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-32 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-32 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-32 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-32 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 9e-32 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-31 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-31 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-31 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-31 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-30 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-13 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-30 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-30 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-10 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-30 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-10 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-30 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-12 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 7e-30 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-11 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-29 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 6e-11 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-29 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 5e-11 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 5e-29 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-28 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 2e-12 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-27 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-28 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-27 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-28 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-12 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-28 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-13 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-28 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-10 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-27 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 3e-11 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-25 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-21 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-20 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-20 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-19 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-11 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-11 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-10 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-09 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 7e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 8e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 8e-09 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-08 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-08 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 8e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-07 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 7e-07 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 7e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-06 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 2e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 6e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 349 bits (898), Expect = e-100
Identities = 213/1146 (18%), Positives = 443/1146 (38%), Gaps = 145/1146 (12%)
Query: 370 SDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAI------ 423
GE+ T ++ D + ++ +IG+ + F G I
Sbjct: 163 DVGELNTRLTDDV-------SKINEGIG--DKIGMFFQAM-----ATFFGGFIIGFTRGW 208
Query: 424 -----TILLIPVNKWIANLIANATEKMMKQKDERIRRTG----EILTHIRTLKMYGWEQI 474
+ + PV A + A ++ + G E+L IRT+ +G ++
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268
Query: 475 ----FSSWLMKTRSSEVKHLSTRKYLDA--WCVFFWATTPTLFSL-FTFGLFALMGHQLD 527
+++ L + + +K T + + + + ++L F +G ++ +
Sbjct: 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS-----YALAFWYGTSLVISKEYS 323
Query: 528 AAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSY 587
V T + I +A + + + + + + + +S S
Sbjct: 324 IGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKII-------DNKPSIDSFSK 376
Query: 588 ISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKS 647
+ N + ++ S Y + +E Q +L ++L + G VA++G G GKS
Sbjct: 377 SGHKPDNIQGN---LEFKNIHFS-YPSRKEVQ--ILKGLNLKVKSGQTVALVGNSGCGKS 430
Query: 648 SLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNY 694
+ + + G + G I V Q P + + TI +NI +G+
Sbjct: 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGR-- 488
Query: 695 DPQSYSETLKACTL-DVD--ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIY 751
+ + E KA + I + +GE+G LSGGQ+ R+A+ARA+ I
Sbjct: 489 EDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL 548
Query: 752 MLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVK 808
+LD+ SA+D + + L A G +T I+ H + + AD++ D G +
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREG-----RTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 809 WIGSSADL--AVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDVVSVSD-- 864
G+ +L +Y T + + + ++ N + ++ +
Sbjct: 604 EQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRS 663
Query: 865 ---------DAQEIIEVEQRKEGRVELTVYKNYAKFSG--WFITLVICLSAILMQASRNG 913
D + ++ + V + K + W +V AI+ +
Sbjct: 664 TRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPA 723
Query: 914 NDLWLSYWVD----TTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVK 969
+ S V + +++ + ++ I + + ++ F+F +
Sbjct: 724 FSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKR 783
Query: 970 VHNTLLTKIVNAPVLFFDQ---TPGGRILNRFSSDL----YMIDDSLPFILNILLANFVG 1022
+ + ++ V +FD T G + R ++D L I + AN
Sbjct: 784 LRYMVFKSMLRQDVSWFDDPKNTTG-ALTTRLANDAAQVKGATGSRLAVIFQNI-ANLGT 841
Query: 1023 LLGIAVV----LSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFT 1078
+ I+++ L+ + + + ++ + K+ + + L+ + S A+
Sbjct: 842 GIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKM-----LSGQALKDKKELEGSGKIAT-- 894
Query: 1079 ETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSY-SELTASLWLSLRLQLLAAFIISFIA 1137
E + T+ + E F + + + + R + + S + + +
Sbjct: 895 EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSF------TQAMMYFS 948
Query: 1138 TMAVI---GSR--GNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERV 1192
A G+ TF LV A+ + A V + +F + K VS +
Sbjct: 949 -YAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYA---KATVSASHI 1004
Query: 1193 LEYMD-VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQV 1249
+ ++ P+ + Q L P+ +G ++F V Y P+ P L ++ ++ G +
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPN-MLEGNVQFSGVVFNY-PTRPSIPVLQGLSLEVKKGQTL 1062
Query: 1250 GIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGS 1309
+VG +G GKS+++ L R G + +DG I V+ LR + +V Q P LF+ S
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 1310 LRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICL 1364
+ +N+ D + +I ++ ++ + ++++ T V + G S GQ+Q I +
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182
Query: 1365 ARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILIL 1424
ARAL++ +L LDE T+ +D ++ ++Q A+ +G T I IAHR+ST+ N D I+++
Sbjct: 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVI 1242
Query: 1425 DHGHLV 1430
+G +
Sbjct: 1243 QNGKVK 1248
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 9e-63
Identities = 117/530 (22%), Positives = 218/530 (41%), Gaps = 71/530 (13%)
Query: 935 SFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRI 994
++Y + + +++ + + + R K+ I+N + +FD G +
Sbjct: 111 AYYYTGIGAGVLIVAYI---QVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGEL 167
Query: 995 LNRFSSDLYMIDDSLPFILNILLAN---FVGLLGIAVVLSY----VQVFFLLLLVPFWFI 1047
R + D+ I++ + + + F G I + V + +L I
Sbjct: 168 NTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGI 227
Query: 1048 YSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLY 1107
++K T +E L + +++ A E L T+ AF + + ++ ++
Sbjct: 228 WAK--ILSSFTDKE---LHAYAKAGAVAE--EVLAAIRTVIAFGGQKKELERYNNNLEEA 280
Query: 1108 QRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSR---------GNLPATFSTPGLV 1158
+R + ++ ++ + I + A G+ G + F + +
Sbjct: 281 KRLG---IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIG 337
Query: 1159 GLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMD-VPQEELCGYQSLSPDWPFQG 1217
++ A+P + +F + V + +D P + PD QG
Sbjct: 338 AFSVGQASP-------NIEAFANA---RGAAYEVFKIIDNKPSIDSFSKSGHKPD-NIQG 386
Query: 1218 LIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+EF+N+ Y PS L +N ++ G V +VG +G GKS+ + + RL G
Sbjct: 387 NLEFKNIHFSY-PSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ +DG +I VR LR VV Q P LF ++ +N+ + +D+
Sbjct: 446 MVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIR--YGREDVT----------M 493
Query: 1336 EEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380
+E+E +T V E G S GQ+Q I +ARAL+++ K+L LDE
Sbjct: 494 DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 1381 TANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
T+ +D ++ +++Q A+ +G T I IAHR+STV N D I D G +V
Sbjct: 554 TSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIV 603
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-30
Identities = 109/536 (20%), Positives = 198/536 (36%), Gaps = 71/536 (13%)
Query: 316 VLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSIM-TIIYQKCLYVRLAERSEFSDGEI 374
+L I +T L+ F + L+K +LR + +++ Q + + + + G +
Sbjct: 757 ILGIISFITFFLQGFTFGKAGEILTK---RLRYMVFKSMLRQDVSWF---DDPKNTTGAL 810
Query: 375 QTFMSVDTDRTVNLANSFHDAWSLPFQIGVALYL-----LYTQVKFAFVSGLAITILLIP 429
T ++ D + + ++ FQ L L + + LAI ++
Sbjct: 811 TTRLANDAA---QVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLL-LLAIVPIIAI 866
Query: 430 VNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKH 489
+++ K K+ + + E + + RT+ EQ F + +
Sbjct: 867 AGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET-MYAQSLQIPYR 925
Query: 490 LSTRKYLDAWCVFFWATTPTLFS---LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLN 546
+ +K F + FS F FG + + + V + +
Sbjct: 926 NAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVG 985
Query: 547 SFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQD 606
A +S + R + E+ SY + GL + V
Sbjct: 986 QVSSFAPDYAKATVSASHIIRII---------EKTPEIDSYSTQGLKPNMLEG-NVQFSG 1035
Query: 607 ATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML------T 660
+ Y VL +SL + KG +A++G G GKS+++ +L
Sbjct: 1036 VVFN-YPTRPSIP--VLQGLSLEVKKGQTLALVGSSGCGKSTVVQ------LLERFYDPM 1086
Query: 661 HGSIHASGS-------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 707
GS+ G + V Q P + +I +NI +G N SY E ++A
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 708 L----DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
I + +G+KG LSGGQ+ R+A+ARA+ I +LD+ SA+D +
Sbjct: 1147 EANIHQF-IDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 764 VARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+ + L A +T I+ H + I AD++VV+ G+VK G+ L
Sbjct: 1206 SEKVVQEALDKA-----REGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQL 1256
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 325 bits (835), Expect = e-100
Identities = 74/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%)
Query: 1210 SPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1269
WP G + +++T +Y A L +I+F+I G +VG++GRTG+GKS++L+A RL
Sbjct: 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70
Query: 1270 TPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVL 1329
G+I +DG++ + + R F V+PQ F+F G+ R NLDP + D +IW V
Sbjct: 71 LNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
++ ++ +E L+ + + G S G +QL+CLAR++L +K+L LDE +A++D
Sbjct: 130 DEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
T I++ + TVI RI +L D+ L+++ +
Sbjct: 190 TYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVR 232
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 7e-26
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 40/297 (13%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------- 668
E N +L +S + G V ++G GSGKS+LL++ L ++ T G I G
Sbjct: 31 EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-LLNTEGEIQIDGVSWDSITL 89
Query: 669 -----SIAYVPQVPWILSGTIRDNILFGKNYDP-QSYS-----ETLKACTLDVDISLMVG 717
+ +PQ +I SGT R N+ DP ++S + L I G
Sbjct: 90 EQWRKAFGVIPQKVFIFSGTFRKNL------DPNAAHSDQEIWKVADEVGLRSVIEQFPG 143
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+ + G LS G + + LAR+V + I +LD+ + +D + I +
Sbjct: 144 KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR--TLKQA 201
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL----AVSLYSGFWSTNEFDTS 833
T ILC ++A+ D +V+++ +V+ S +L A +GF + + +
Sbjct: 202 FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSPKMN-- 259
Query: 834 LHMQKQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAK 890
+ + T ++ + + V + +++++ + + L + +
Sbjct: 260 -FLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDV-----QVGANMSLGIRPEHLL 310
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 2e-96
Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)
Query: 596 NSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+ V+M++ T W EE VL ++ + +G L+AV G G+GK+SLL I+G
Sbjct: 1 SLTTTEVVMENVTAFW----EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
Query: 656 EMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
E+ + G I SG I++ Q WI+ GTI++NI+FG +YD Y +KAC L+ DIS
Sbjct: 57 ELEPSEGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKF 116
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
D +GE G+ LSGGQRAR++LARAVY +D+Y+LD +D + I + +
Sbjct: 117 AEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
M KTRIL T ++ + AD ++++ +G + G+ ++L
Sbjct: 177 -LMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-39
Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+ +NVT ++ L DINF IE G + + G TGAGK+S+L + G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKC 1332
+I GR + Q ++ G++++N+ + D+ + SV++ C
Sbjct: 64 KIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSY---DEYRYRSVIKAC 107
Query: 1333 HVKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS 1390
++E++ A + E GI+ S GQR I LARA+ K + + LD +D T
Sbjct: 108 QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 167
Query: 1391 -ILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
I ++ + T I + ++ + D+ILIL G
Sbjct: 168 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSY 208
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 308 bits (792), Expect = 2e-96
Identities = 96/217 (44%), Positives = 141/217 (64%), Gaps = 5/217 (2%)
Query: 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660
++ +++AT +W LN ++ +P+G+LVAV+G+VG GKSSLL+++L EM
Sbjct: 3 SITVRNATFTW----ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 58
Query: 661 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDM 720
G + GS+AYVPQ WI + ++R+NILFG + Y ++AC L D+ ++ GD
Sbjct: 59 EGHVAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDR 118
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
IGEKGVNLSGGQ+ R++LARAVY +DIY+ DD LSAVDA V + I N I ML+
Sbjct: 119 TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178
Query: 781 -KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
KTRIL TH++ + D+++VM G++ +GS +L
Sbjct: 179 NKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
I +N T + S P L+ I F+I G V +VG+ G GKSS+L+AL G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCH 1333
+ + +G A VPQ ++ SLR+N+ ++ SV++ C
Sbjct: 62 VAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQL---EEPYYRSVIQACA 105
Query: 1334 VKEEVE--AVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTAS- 1390
+ ++E G T + E G++ S GQ+Q + LARA+ ++ + D+ + VDA
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 1391 ILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLV 1430
I +N I + K T I + H +S + +D I+++ G +
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKIS 207
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 2e-93
Identities = 94/307 (30%), Positives = 150/307 (48%), Gaps = 24/307 (7%)
Query: 560 ISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQ 619
+ + +T F E EL + A N+ + D + S+ N
Sbjct: 5 VVMENVTAFW--EEGFGELFEKAKQ-----------NNNNRKTSNGDDSLSF-SNFSLLG 50
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 679
VL ++ + +G L+AV G G+GK+SLL I+GE+ + G I SG I++ Q WI
Sbjct: 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWI 110
Query: 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739
+ GTI++NI+ G +YD Y +KAC L+ DIS D +GE G+ LSGGQRAR++
Sbjct: 111 MPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 169
Query: 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMV 799
LARAVY +D+Y+LD +D + I + + M KTRIL T ++ + AD +
Sbjct: 170 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK-LMANKTRILVTSKMEHLKKADKI 228
Query: 800 VVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSANKQILLQEKDV 859
+++ +G + G+ ++L +F +S M ++ IL +
Sbjct: 229 LILHEGSSYFYGTFSELQN-------LRPDF-SSKLMGCDSFDQFSAERRNSILTETLHR 280
Query: 860 VSVSDDA 866
S+ DA
Sbjct: 281 FSLEGDA 287
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-39
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 29/254 (11%)
Query: 1186 MVSLERVLEYMDVPQEELC----GYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINF 1241
V +E V + + EL + + F N ++ P L DINF
Sbjct: 4 EVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINF 59
Query: 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQ 1301
IE G + + G TGAGK+S+L + G+I GR + Q
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQ 106
Query: 1302 SPFLFEGSLRDNL--DPFHMNDDLKIWSVLEKCHVKEEVE--AVGLETFVKESGISFSVG 1357
+ ++ G++++N+ + D+ + SV++ C ++E++ A + E GI+ S G
Sbjct: 107 NSWIMPGTIKENIIGVSY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGG 163
Query: 1358 QRQLICLARALLKSSKVLCLDECTANVDAQTAS-ILQNAISSECKGMTVITIAHRISTVL 1416
QR I LARA+ K + + LD +D T I ++ + T I + ++ +
Sbjct: 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK 223
Query: 1417 NMDEILILDHGHLV 1430
D+ILIL G
Sbjct: 224 KADKILILHEGSSY 237
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 283 bits (727), Expect = 4e-83
Identities = 123/557 (22%), Positives = 248/557 (44%), Gaps = 32/557 (5%)
Query: 888 YAK-FSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCM 946
F I I L IL AS L +D + + +V+ +
Sbjct: 19 TIAPFKAGLIVAGIAL--ILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 947 FNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMID 1006
+ + ++ ++ S + + + L ++ PV FFD+ G +L+R + D +
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVA 136
Query: 1007 DSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYSKLQFFYRST 1058
S L ++ ++G+ +++ Y L++L P + + + ++
Sbjct: 137 SSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNM 196
Query: 1059 SRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118
+ ++ + + + L G + F ++ +F + + ++AS
Sbjct: 197 QNTMGQVTTSA--------EQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 248
Query: 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSS 1178
+QL+A+ ++F+ S ++ + + + + S ++ L + +
Sbjct: 249 SISDPIIQLIASLALAFVL---YAASFPSVMDSLTAGTITVV-FSSMIALMRPLKSLTNV 304
Query: 1179 FTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHD 1238
+ ++ M + + + +D QE+ G + + G +EF+NVT Y AL +
Sbjct: 305 NAQFQRGMAACQTLFAILDSEQEKDEGKRVIDR---ATGDLEFRNVTFTYPGREVPALRN 361
Query: 1239 INFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298
IN I G V +VGR+G+GKS+I + + R I G IL+DG ++ + LR + A+
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 1299 VPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGIS 1353
V Q+ LF ++ +N+ + + +I + + + + GL+T + E+G+
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSRE-QIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480
Query: 1354 FSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRIS 1413
S GQRQ I +ARALL+ S +L LDE T+ +D ++ +Q A+ K T + IAHR+S
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540
Query: 1414 TVLNMDEILILDHGHLV 1430
T+ DEI++++ G +V
Sbjct: 541 TIEQADEIVVVEDGIIV 557
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-33
Identities = 114/586 (19%), Positives = 221/586 (37%), Gaps = 79/586 (13%)
Query: 272 AYGYPY----ICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTS 325
P+ I G+ ++N + LL L+ F + L + + +
Sbjct: 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPLVVIGLM 75
Query: 326 ILKSFFDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRT 385
IL+ S+ +S + K+ ++ ++ + + +A + S G + + ++ D++
Sbjct: 76 ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSE-- 133
Query: 386 VNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIAN 440
+A+S A + IG+ + + Y + + I ++L P+ +++
Sbjct: 134 -QVASSSSGALITVVREGASIIGLFIMMFYYSWQLSI-----ILVVLAPIVSIAIRVVSK 187
Query: 441 ATEKMMKQKDERI----RRTGEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLST 492
+ K + ++L + + ++G +++ F K R +K +S
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 493 RKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVI 552
D + + F + L A + + +L+ PL S V
Sbjct: 248 SSISDPIIQLIASLALAF--VLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVN 305
Query: 553 NGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLS----NFNSKDMAVIMQDAT 608
+ + L L + + E ++ + L F
Sbjct: 306 AQFQRGMAACQTLFAIL---DSEQEKDEGKRVIDRATGDLEFRNVTFT------------ 350
Query: 609 CSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG 668
Y E L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 351 ---YPGREVP---ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404
Query: 669 -------------SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDIS 713
+A V Q + + T+ +NI + + Y + E + I+
Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFIN 464
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LS 770
M G IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I L
Sbjct: 465 KMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 771 NAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T ++ H + I AD +VV++ G + G+ ++L
Sbjct: 525 EL-----QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 3e-81
Identities = 114/509 (22%), Positives = 229/509 (44%), Gaps = 36/509 (7%)
Query: 938 LVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNR 997
++L + ++ ++ S +++ L ++ PV FFDQ G +L+R
Sbjct: 69 FMILGLM-FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSR 127
Query: 998 FSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIYS 1049
+ D + + L ++ ++G+ ++ + L+++ P F+
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 1050 KLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQR 1109
+ + R+ + + S + + L G + ++ ++ +F + ++
Sbjct: 188 RFRKISRNMQTAMGHVTSSA--------EQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239
Query: 1110 TSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLV---GLALSYAA 1166
+ ++A +Q++A+ + + + S ++ A +
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVL---FLASVDSIRAELTPGTFTVVFSAMFGLMR 296
Query: 1167 PIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTM 1226
P+ +L + S F M + + + MD+ E G G ++ ++VT
Sbjct: 297 PLKAL-TSVTSEFQRG---MAACQTLFGLMDLETERDNGKYEAER---VNGEVDVKDVTF 349
Query: 1227 RYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIIN 1286
Y+ AL ++F+I G V +VGR+G+GKS+I N R + G I +DG ++ +
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 1287 TPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHVKEEVEAV-- 1341
+ +LR FA+V Q+ LF ++ +N+ + +I + H E +E +
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE-QIEQAARQAHAMEFIENMPQ 468
Query: 1342 GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECK 1401
GL+T + E+G S S GQRQ + +ARALL+ + VL LDE T+ +D ++ +Q A+ K
Sbjct: 469 GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528
Query: 1402 GMTVITIAHRISTVLNMDEILILDHGHLV 1430
TV+ IAHR+ST+ DEIL++D G ++
Sbjct: 529 NKTVLVIAHRLSTIEQADEILVVDEGEII 557
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 4e-32
Identities = 107/557 (19%), Positives = 209/557 (37%), Gaps = 67/557 (12%)
Query: 293 AGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRSSI 350
LL L+ F S L +L + ++ S+ LS + + +
Sbjct: 43 YMISLLKPLLDEGFGNAESNFL--RILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQM 100
Query: 351 MTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANSFHDAWSLPFQ-----IGVA 405
++ +++ + + S G + + ++ D++ +A + A + IG+
Sbjct: 101 RRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE---QVAGATSRALVSIVREGASIIGLL 157
Query: 406 LYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRTGEILT 461
+ + + + + I++ PV + + ++ K+ + + ++L
Sbjct: 158 TLMFWNSWQLSL-----VLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLK 212
Query: 462 HIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFSLFTFG 517
+ + YG +++ F R +K +S + D + +
Sbjct: 213 GHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA--VLFLA 270
Query: 518 LFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHE 577
+ +L + L+ PL + V + + + L +
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM-------- 322
Query: 578 LEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVA 637
+ + NG + V ++D T + Y E+ L+ VS +P+G VA
Sbjct: 323 -----DLETERDNGKYEAERVNGEVDVKDVTFT-YQGKEKP---ALSHVSFSIPQGKTVA 373
Query: 638 VIGEVGSGKSSLLNSILGEMMLTHGSIHASG-------------SIAYVPQVPWILSGTI 684
++G GSGKS++ N + GSI G A V Q + + TI
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 685 RDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742
+NI + Y + + + I M G IGE G +LSGGQR R+A+AR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 743 AVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTHNVQAISAADMV 799
A+ + + +LD+ SA+D + R I L KT ++ H + I AD +
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDEL-----QKNKTVLVIAHRLSTIEQADEI 548
Query: 800 VVMDKGQVKWIGSSADL 816
+V+D+G++ G ADL
Sbjct: 549 LVVDEGEIIERGRHADL 565
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 3e-78
Identities = 111/523 (21%), Positives = 228/523 (43%), Gaps = 32/523 (6%)
Query: 923 DTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAP 982
T + + T + L IF + + +R + + S + + L +
Sbjct: 49 ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALS 108
Query: 983 VLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLL 1039
F+ G++++R +D+ D + L + + + ++ ++ ++ V L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 1040 LLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAK 1099
+ PF+ + + + R+L R S + + + E + G S +++F ED
Sbjct: 169 FIFPFYILTV---YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKN 225
Query: 1100 FKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVG 1159
F + + + + + + + + +G+ + + + L
Sbjct: 226 FDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVI---GVGAYLAISGSITVGTLAA 282
Query: 1160 ---LALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWP 1214
P+ L ++ T++ S++RV + +D + G Q +
Sbjct: 283 FVGYLELLFGPLRRL-VASFTTLTQS---FASMDRVFQLIDEDYDIKNGVGAQPIEI--- 335
Query: 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R +
Sbjct: 336 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN-----LDPFHMNDDLKIWSVL 1329
GQIL+DG NI + LR + +V Q LF ++++N D ++
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA----TDEEVVEAA 451
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 452 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+V
Sbjct: 512 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 554
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-26
Identities = 103/568 (18%), Positives = 203/568 (35%), Gaps = 75/568 (13%)
Query: 290 IGFAGPLLLNKLIKFLQQGSGHLDGYV-------LAIALGLTSILKSFFDTQYSFHLSKL 342
I PLL+ I + + IAL + I++ + +
Sbjct: 29 IPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWT 88
Query: 343 KLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLA-NSFHDAWSLPFQ 401
K+ I +Y + + G++ + + D ++T + + W
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCIT 148
Query: 402 -IGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDERI----RRT 456
I + + VK + + P + K+ +++ + +
Sbjct: 149 IIIALSIMFFLDVKLTL-----AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFL 203
Query: 457 GEILTHIRTLKMYGWEQI----FSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTLFS 512
E + I +K + E F + +KH Y A P +
Sbjct: 204 HERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII-- 261
Query: 513 LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCS 572
+ G + + + + + L PL L +F S+ R+ + +
Sbjct: 262 VIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI--- 318
Query: 573 EYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPK 632
+ ++++ + + + + + + Y + + +L ++L + K
Sbjct: 319 DEDYDIKNGVGAQP-----IEIKQGR---IDIDHVSFQ-Y---NDNEAPILKDINLSIEK 366
Query: 633 GSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASG-------------SIAYVPQ 675
G VA +G G GKS+L+N I +T G I G I V Q
Sbjct: 367 GETVAFVGMSGGGKSTLINLI----PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 676 VPWILSGTIRDNILFGKNYDPQ-SYSETLKACTL---DVDISLMVGGDMAYIGEKGVNLS 731
+ S T+++NIL G+ P + E ++A + I + G +GE+GV LS
Sbjct: 423 DNILFSDTVKENILLGR---PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMGPHMLQKTRILCTH 788
GGQ+ RL++AR + I +LD+ SA+D + I L +T ++ H
Sbjct: 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKD-----RTTLIVAH 534
Query: 789 NVQAISAADMVVVMDKGQVKWIGSSADL 816
+ I+ AD +VV++ G + G+ +L
Sbjct: 535 RLSTITHADKIVVIENGHIVETGTHREL 562
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 4e-66
Identities = 137/537 (25%), Positives = 232/537 (43%), Gaps = 90/537 (16%)
Query: 937 YLVVLCIFCMFNSFLTLVRAFSFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILN 996
Y+++L S L ++ S ++ L K+ PV FFD+TP G I++
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 997 RFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQV---FFLLLLVPF-----WFIY 1048
R +D+ I++ L + + V L G +++ V V L +VP +
Sbjct: 139 RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVS 198
Query: 1049 SKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQ 1108
S+ + ++ R L +L+ + E ++G + I+ F E+ M KF +
Sbjct: 199 SQTRKYFYENQRVLGQLNGI--------IEEDISGLTVIKLFTREEKEMEKFDRVNESLR 250
Query: 1109 RTSYSELTASLWLSLRLQLLAAFI---ISFI-----ATMAVIGS----RGNLPATFSTPG 1156
+ + Q+ + + ++ + A ++ G + + T G
Sbjct: 251 KVGT-----------KAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDII-----TVG 294
Query: 1157 LVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDVPQEELCGYQSLSPDWPFQ 1216
+ + Y+ L + F + + S ER+ E +D+ +E+ +
Sbjct: 295 TIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELR--EVR 352
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G IEF+NV Y P L DI F I+ G +V +VG TG+GK++I+N L R + GQ
Sbjct: 353 GEIEFKNVWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--------DPFHMNDDLKIWSV 1328
ILVDG++I LR +V Q LF ++++NL D
Sbjct: 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATD------------- 458
Query: 1329 LEKCHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSK 1373
EE++ G ET + ++G S GQRQL+ + RA L + K
Sbjct: 459 -------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPK 511
Query: 1374 VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+L LDE T+NVD +T +Q A+ +G T I IAHR++T+ N D I++L G +V
Sbjct: 512 ILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 5e-14
Identities = 118/599 (19%), Positives = 213/599 (35%), Gaps = 130/599 (21%)
Query: 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 331
+ + I + + V+ +G P L+ K I L + I + L S
Sbjct: 35 HTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIY-ALTSLL 93
Query: 332 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSD---------------GEIQT 376
+ L+ IM + Q ++ RL R E + G+I +
Sbjct: 94 --FW----------LQGKIMLTLSQDVVF-RL--RKELFEKLQRVPVGFFDRTPHGDIIS 138
Query: 377 FMSVDTDRTVNLANSFHDAWSLPFQ-----IGVALYLLYTQVKFAFVSGLAITILLIPVN 431
+ D D N+ N ++ F G + + V + +T+ ++P+
Sbjct: 139 RVINDVD---NINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL-----VTLSIVPLT 190
Query: 432 KWIANLIANATEKM-MKQKDERIRRTG---EILTHIRTLKMYGWEQIFSSWLMKTRSSEV 487
I ++++ T K + + + G E ++ + +K++ E+ + E
Sbjct: 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREE---------KEMEK 241
Query: 488 KHLSTRKYLDAWC--VFFWATTP---TLFSLFTFGLFALMGHQLDAAMVFT--CLALF-- 538
F P + + F L + G L + T +A F
Sbjct: 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 539 --NSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFN 596
PLN N + A S R+ L + + E + G
Sbjct: 302 YSRQFTRPLNELSNQFNMIQMALASAERIFEIL---DLEEEKDDPDAVELREVRG----- 353
Query: 597 SKDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGE 656
+ ++ S Y +++ VL ++ + G VA++G GSGK++++N +
Sbjct: 354 ----EIEFKNVWFS-Y----DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL--- 401
Query: 657 MM----LTHGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQ-S 698
M + G I G SI V Q + S T+++N+ +G P +
Sbjct: 402 -MRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN---PGAT 457
Query: 699 YSETLKACTL-DVD--ISLMVGG-DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754
E +A L D I + G + + + G +LS GQR LA+ RA I +LD
Sbjct: 458 DEEIKEAAKLTHSDHFIKHLPEGYET-VLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516
Query: 755 DVLSAVDA------QVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQV 807
+ S VD Q A M M KT I+ H + I AD+++V+ G++
Sbjct: 517 EATSNVDTKTEKSIQAA--------MWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 4e-63
Identities = 113/418 (27%), Positives = 202/418 (48%), Gaps = 31/418 (7%)
Query: 1024 LGIAVVLSYVQVFFL-LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLN 1082
+ I V LS V +F + +++ F ++ K +R ++ V R E L
Sbjct: 159 VSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVR--------ENLL 210
Query: 1083 GSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTASLWLSLRLQLLAAFIISFIATMAVI 1142
G +RAF+ E+Y F++ +R+ ++A + L L I + +AV+
Sbjct: 211 GVRVVRAFRREEYENENFRKANESLRRSI---ISAFSLIVFALPLF--IFIVNMGMIAVL 265
Query: 1143 --GSRGNLPATFSTPGLVGLALSYAAPI---VSLLGNFLSSFTETEKEMVSLERVLEYMD 1197
G ++ +Y I + ++GN L+ + S +RVLE ++
Sbjct: 266 WFGGVLVRNNQMEIGSIMAY-TNYLMQIMFSLMMIGNILNFIV---RASASAKRVLEVLN 321
Query: 1198 VPQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGA 1257
+L+ +G + F+NV RY + L +NF+++ G+ V ++G TG+
Sbjct: 322 EKPAIEEADNALALP-NVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGS 380
Query: 1258 GKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--- 1314
GKS+++N + RL G++ VD L++ ++DLRG + VPQ LF G++++NL
Sbjct: 381 GKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWG 440
Query: 1315 DPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSS 1372
DD +I + + + + ++ G ++ V+ G +FS GQ+Q + +ARAL+K
Sbjct: 441 RE-DATDD-EIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKP 498
Query: 1373 KVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
KVL LD+CT++VD T + + + KG T I +I T L D+IL+L G +
Sbjct: 499 KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVA 556
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 8e-31
Identities = 64/223 (28%), Positives = 105/223 (47%), Gaps = 27/223 (12%)
Query: 612 YCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--- 668
Y N + VL+ V+ + GSLVAV+GE GSGKS+L+N I + G +
Sbjct: 351 YFENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
Query: 669 ----------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLK-----ACTLDVDIS 713
I+ VPQ + SGTI++N+ +G+ + + + A D I
Sbjct: 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR---EDATDDEIVEAAKIAQIHDF-II 463
Query: 714 LMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAI 773
+ G + + G N SGGQ+ RL++ARA+ + +LDD S+VD + IL
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDG-- 521
Query: 774 MGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+ + T + T + AD ++V+ +G+V G+ +L
Sbjct: 522 LKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 208 bits (532), Expect = 3e-60
Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 11/265 (4%)
Query: 1172 LGNFLSSFTETEKEMVSLERVLEYMDVPQE--ELCGYQSLSPDWPFQGLIEFQNVTMRYK 1229
+ + +E + + + E +L G L +G IEF+NV Y
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQ---KGRIEFENVHFSYA 64
Query: 1230 PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV 1289
L D++FT+ G + +VG +GAGKS+IL LFR I G I +DG +I
Sbjct: 65 DGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 1290 RDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVKEEVEAV--GLET 1345
LR VVPQ LF ++ DN+ +D ++ + + + + + A G T
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRT 182
Query: 1346 FVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTV 1405
V E G+ S G++Q + +AR +LK+ ++ LDE T+ +D +Q +++ C T
Sbjct: 183 QVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTT 242
Query: 1406 ITIAHRISTVLNMDEILILDHGHLV 1430
I +AHR+STV+N D+IL++ G +V
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIV 267
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-27
Identities = 65/305 (21%), Positives = 117/305 (38%), Gaps = 40/305 (13%)
Query: 541 LISPLNSFPWVINGLIDAFISIRRLTRFLGCSEYKHELEQAANSPS-YISNGLSNFNSKD 599
+ ++ FI + + L + + E++ + G F +
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLL---KEETEVKDLPGAGPLRFQKGRIEFENVH 60
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
+ Y + L VS + G +A++G G+GKS++L + +
Sbjct: 61 FS----------Y----ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI 106
Query: 660 THGSIHASG-------------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC 706
+ G I G I VPQ + + TI DNI +G+ E A
Sbjct: 107 SSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT--AGNDEVEAAA 164
Query: 707 ---TLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQ 763
+ I G +GE+G+ LSGG++ R+A+AR + I +LD+ SA+D
Sbjct: 165 QAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTS 224
Query: 764 VARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLY 821
R I ++ + +T I+ H + + AD ++V+ G + G L +Y
Sbjct: 225 NERAIQAS--LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVY 282
Query: 822 SGFWS 826
+ W
Sbjct: 283 ADMWQ 287
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 4e-60
Identities = 80/234 (34%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 1275 GQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEK 1331
GQ+L+DG ++ LR + VV Q L S+ DN+ +P M+
Sbjct: 64 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANP-GMSV---------- 112
Query: 1332 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376
E+V G T V E G S GQRQ I +ARAL+ + K+L
Sbjct: 113 ----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 168
Query: 1377 LDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
DE T+ +D ++ ++ + CKG TVI IAHR+STV N D I++++ G +V
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 222
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 5e-28
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGD 719
+ V Q +L+ +I DNI S + + A L IS + G
Sbjct: 78 PNWLRRQVGVVLQDNVLLNRSIIDNISLAN--PGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 720 MAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML 779
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICK 193
Query: 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T I+ H + + AD ++VM+KG++ G +L
Sbjct: 194 GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 201 bits (515), Expect = 9e-59
Identities = 71/218 (32%), Positives = 119/218 (54%), Gaps = 7/218 (3%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ ++V Y L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL---DPFHMNDDLKIWSVLEKCHV 1334
+DG I N + + R + V Q + G++R+NL D+ +W VL+
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE-DLWQVLDLAFA 118
Query: 1335 KEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
+ VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMV 178
Query: 1393 QNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
Q A+ S KG T + IAHR+ST+++ D+I ++ G +
Sbjct: 179 QKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 8e-29
Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 31/233 (13%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMML--------TH 661
++ +L +S S++A G G GKS++ + + GE+ + +
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL 71
Query: 662 GSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGG 718
+ + I +V Q I++GTIR+N+ +G D + + + L + M
Sbjct: 72 ENWRSQ--IGFVSQDSAIMAGTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQ 128
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWI---LSNAIMG 775
+GE+GV +SGGQR RLA+ARA I MLD+ +++D++ + L +
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL--- 185
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVS--LYSGFWS 826
M +T ++ H + I AD + ++KGQ+ G +L + LY+ + S
Sbjct: 186 --MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 7e-53
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 7/221 (3%)
Query: 1215 FQGLIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPI 1272
F IEF +V Y + + L INF I GT +VG TG+GKS+I L+R
Sbjct: 14 FGVNIEFSDVNFSYPKQTNHRT-LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEK 1331
G I + G N+ +R +VPQ LF +++ N+ ++ D ++ +
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 1332 CHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
+ + +EA+ +T V G+ S G+RQ I +AR LLK K++ DE T+++D++T
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ Q A+ K T+I IAHR+ST+ + + I++L+ G +V
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIV 232
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 615 NEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL------GEMM--------LT 660
++ + L ++ +P G+ A++G GSGKS++ + G++
Sbjct: 28 PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYN 87
Query: 661 HGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKAC---TLDVDISLMVG 717
SI + I VPQ + + TI+ NIL+GK + E +KA L I +
Sbjct: 88 RNSIRSI--IGIVPQDTILFNETIKYNILYGK--LDATDEEVIKATKSAQLYDFIEALPK 143
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777
+G KG+ LSGG+R R+A+AR + I + D+ S++D++ +
Sbjct: 144 KWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA--VEDL 201
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
+T I+ H + IS+A+ +++++KG++ G+ DL Y+ W+
Sbjct: 202 RKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 178 bits (455), Expect = 2e-50
Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 31/236 (13%)
Query: 1214 PFQGLIEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTP 1271
+GL++FQ+V+ Y P+ P L + FT+ G +VG G+GKS++ L L
Sbjct: 12 NMKGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70
Query: 1272 ICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEK 1331
GG++L+DG ++ L + A V Q P LF S R+N I L +
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFREN-----------IAYGLTR 119
Query: 1332 CHVKEEVEAV---------------GLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376
EE+ AV G +T V E+G S GQRQ + LARAL++ ++L
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1377 LDECTANVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
LD T+ +DA +Q + S E TV+ I ++S IL L G +
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-26
Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 33/219 (15%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL-------GEMM--------LTHGSIHA 666
VL ++ L G + A++G GSGKS++ + G+++ H +H
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH- 92
Query: 667 SGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTL---DVDISLMVGGDMAYI 723
+A V Q P + + R+NI +G P + E IS G +
Sbjct: 93 -TQVAAVGQEPLLFGRSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEV 150
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA------QVARWILSNAIMGPH 777
GE G LSGGQR +ALARA+ + +LD+ SA+DA Q L + P
Sbjct: 151 GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRL---LYES---PE 204
Query: 778 MLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
+T +L T + A ++ + +G V G+ L
Sbjct: 205 WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQL 243
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 6e-30
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 33/225 (14%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I+ +NV + K +L +IN + G V I+G G+GK+++L A+ L P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVNGEK-VIILGPNGSGKTTLLRAISGLLP-YSG 58
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD------LKIWS 1327
I ++G+ + R +R P + + D LK
Sbjct: 59 NIFINGMEV-----RKIRNYIRYSTNLPEAY---------EIGVTVNDIVYLYEELKGLD 104
Query: 1328 VLEKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ E ++A+ L E ++ S GQ L+ + AL +++ LDE NVDA
Sbjct: 105 ---RDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA 161
Query: 1387 QTASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
++ I G I + H + + + G+ +
Sbjct: 162 ARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRL 204
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 30/206 (14%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668
+ + + L ++L + G V ++G GSGK++LL +I G ++ G+I +G
Sbjct: 12 SGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFINGMEVRK 69
Query: 669 ---SIAYVPQVP--WILSGTIRDNILFG---KNYDPQSYSETLKACTLDVDISLMVGGDM 720
I Y +P + + T+ D + K D + E LK +
Sbjct: 70 IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK----------ALKLGE 119
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
+ K LS GQ + + A+ +I LD+ VDA R ++S I
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR-RHVISRYI---KEYG 175
Query: 781 KTRILCTHNVQ-AISAADMVVVMDKG 805
K IL TH + + G
Sbjct: 176 KEGILVTHELDMLNLYKEYKAYFLVG 201
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 5e-28
Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 28/225 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +++ R L I+F IE G G++G GAGK++ L + L G +
Sbjct: 16 VVVKDLRKRIGKKE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCH 1333
V G N++ P ++R + +P+ + + L + +
Sbjct: 74 VFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI------EEM 126
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V+ E GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A ++
Sbjct: 127 VERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 186
Query: 1394 NAISSECK-GMTVITIAHRISTVLNMDE-------ILILDHGHLV 1430
+ + G+T++ +H NM E I ++ +G +V
Sbjct: 187 KILKQASQEGLTILVSSH------NMLEVEFLCDRIALIHNGTIV 225
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 41/221 (18%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK 88
Query: 669 SIAYVPQVP---WILSGTIRDNILF-GKNYD------PQSYSETLKACTLDVDISLMVGG 718
I+Y+P+ + G + + F Y + + L
Sbjct: 89 LISYLPEEAGAYRNMQG--IEYLRFVAGFYASSSSEIEEMVERATEIAGLG--------- 137
Query: 719 DMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
I ++ S G +L +ARA+ + +LD+ S +D AR + +
Sbjct: 138 --EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR-KILKQASQ 194
Query: 779 LQKTRILCTHN---VQAISAADMVVVMDKGQVKWIGSSADL 816
T ++ +HN V+ + D + ++ G + G+ +L
Sbjct: 195 EGLTILVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 9e-28
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 24/228 (10%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPICG 1274
+++ + + Y A L IN I+ G I+G G GKS++ N + + +
Sbjct: 7 ILKVEELNYNYSDGTHA-LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---S 62
Query: 1275 GQILVDGLNIINTP--VRDLRGRFAVVPQSPF--LFEGSLRDNLD----PFHMNDDLKIW 1326
G+IL D I + + LR +V Q P LF S+ D +N L
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQ--DVSFGA--VNMKLPED 118
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDA 1386
+ ++ V ++ G+E + S GQ++ + +A L+ KVL LDE TA +D
Sbjct: 119 EIRKR--VDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176
Query: 1387 QTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVC 1431
S + + + G+T+I H I V D + ++ G ++
Sbjct: 177 MGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 2e-14
Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 28/221 (12%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQ 675
+ L +++ + +G + A++G G GKS+L + G + + G I I Y +
Sbjct: 18 SDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK 77
Query: 676 VPW----------------ILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISL-MVG 717
+ S ++ ++ FG N E K VD +L G
Sbjct: 78 GIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKR----VDNALKRTG 132
Query: 718 GDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ ++ +K LS GQ+ R+A+A + + +LD+ + +D I+ +
Sbjct: 133 --IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190
Query: 777 HMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
L T I+ TH++ D V VM +G+V G+ ++
Sbjct: 191 KELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 1e-27
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 35/231 (15%)
Query: 1219 IEFQNVTMRYKPSLPA---ALHDINFTIEGGTQVGIVGRTGAGKSSI---LNALFRLTPI 1272
IE NV+ + P AL +++ I G + + G TG+GKS++ + L + P
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL--IEP- 59
Query: 1273 CGGQILVDGLNIINTPVRDLRGRFAVVPQSPF--LFEGSLRD-------NLDPFHMNDDL 1323
G +L DG ++R + Q P F + D N P
Sbjct: 60 TSGDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------- 109
Query: 1324 KIWSVLEKCHVKEEVEAVGL--ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECT 1381
VK+ +E VGL ++F S G+++ + +A ++ +L LDE
Sbjct: 110 ---DRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166
Query: 1382 ANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+D + + L + + G TVI I+H I TV+N D +++L+ G V
Sbjct: 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV 217
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-20
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 24/233 (10%)
Query: 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659
M + + + + + + L VSL + +G + V G GSGKS+LL + G +
Sbjct: 1 MRIEVVNVSHI-FHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 660 THGSIHASG----------SIAYVPQVP--WILSGTIRDNILFG-KNYDPQSYSETLKAC 706
T G + G +I Q P + + D + F KN+ P + +
Sbjct: 60 TSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPL- 116
Query: 707 TLDVDISL-MVGGDMAYIGEKGV-NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV 764
V ++ VG D ++ LSGG++ R+A+A + H DI +LD+ L +D +
Sbjct: 117 ---VKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREG 173
Query: 765 ARWILSNAIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+L + L KT IL +H++ I+ D VVV++KG+ + G+ +
Sbjct: 174 KTDLL-RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-27
Identities = 45/215 (20%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+E +++++ Y L I TIE G V G G GK+++L + G+I+
Sbjct: 11 LEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+G+ I ++G+ +P+ + S+ D L L V + + +
Sbjct: 68 YNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLK-AVA--SLYGVKVNKN-EIMDA 118
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
+E+V + K+ G S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 119 LESVEVLDLKKKLG-ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177
Query: 1398 SECK--GMTVITIAHRISTVLNMDEILILDHGHLV 1430
K G+ +I+ +S D L
Sbjct: 178 EILKEKGIVIISSREELSYC---DVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 29/202 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 671
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 81
Query: 672 YVPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
++P+ + ++ D + G + + L++ + D+ +G
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DLKKKLG-------- 132
Query: 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRIL 785
LS G R+ LA + ++IY+LDD + A+D +L +I+ + I+
Sbjct: 133 ---ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVL-KSILEILKEKGIVII 188
Query: 786 CTHNVQAISAADMVVVMDKGQV 807
+ + D+ + K
Sbjct: 189 SSREELSY--CDVNENLHKYST 208
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-27
Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 23/229 (10%)
Query: 1218 LIEFQNVTMRY--KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
LI+ + K L I++ I G + + G GAGK+++LN L P G
Sbjct: 21 LIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 1276 QILVDG--LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHM-----NDDLKIWSV 1328
+ + G + +R V S ++ + + ++
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQD 133
Query: 1329 L---EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ + + ++ VG+ ++ S G++Q + +ARAL+ +VL LDE A +D
Sbjct: 134 IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 1386 AQT-ASILQ--NAISSECKGMTVITIAHRISTVLN-MDEILILDHGHLV 1430
S+L +++S + +I + H I + +IL+L G +
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSI 242
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 45/248 (18%), Positives = 90/248 (36%), Gaps = 46/248 (18%)
Query: 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658
M + + + +L ++S + KG + G G+GK++LLN +
Sbjct: 19 HMLIQLDQIGRMK------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72
Query: 659 LTHGSIHASG---------------SIAYVPQ---VPWILSGTIRDNILFGKN-----YD 695
T G+++ G I +V + + D ++ G Y
Sbjct: 73 ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ 132
Query: 696 PQSYSETLKACTL--DVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYML 753
+A L V +S A + LS G++ R+ +ARA+ + +L
Sbjct: 133 DIDDEIRNEAHQLLKLVGMS-------AKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185
Query: 754 DDVLSAVDAQVARWILSN----AIMGPHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVK 808
D+ + +D +LS + P + I TH ++ + ++++ GQ
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTL---AMIYVTHFIEEITANFSKILLLKDGQSI 242
Query: 809 WIGSSADL 816
G+ D+
Sbjct: 243 QQGAVEDI 250
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 44/238 (18%), Positives = 85/238 (35%), Gaps = 52/238 (21%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 56
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE------- 1330
G + L A + Q PF V
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTP----------PFAT-------PVWHYLTLHQH 99
Query: 1331 ----KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALL-------KSSKVLCLDE 1379
+ + A+ L+ + S S G+ Q + LA +L + ++L LDE
Sbjct: 100 DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159
Query: 1380 CTANVD-AQTASILQNAISSECKGMTVITIAHRISTVLNM-----DEILILDHGHLVC 1431
++D AQ +++ + + +G+ ++ +H LN +L G ++
Sbjct: 160 PMNSLDVAQQSALDKILSALSQQGLAIVMSSHD----LNHTLRHAHRAWLLKGGKMLA 213
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 47/223 (21%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L +S + G ++ ++G G+GKS+LL + G GSI +G
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLAL 73
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
AY+ Q + + ++ + ++ A +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL------------ALDDKLG 121
Query: 726 KGVN-LSGGQRARLALARA-------VYHGSDIYMLDDVLSAVD----AQVARWILSNAI 773
+ N LSGG+ R+ LA + +LD+ ++++D + + + + + +
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 774 MGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSAD 815
G ++ +H++ + A ++ G++ G +
Sbjct: 182 QG-----LAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 4e-22
Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 40/229 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +N+ Y + +NF + G + ++G+ G GKS++L+ L + G+I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------------HMNDDLKIW 1326
++ VPQ + + H+N
Sbjct: 63 ------------EVYQSIGFVPQFF--------SSPFAYSVLDIVLMGRSTHIN-TFAKP 101
Query: 1327 SVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ + ++ + L + + S GQRQLI +ARA+ K++ LDE T+ +D
Sbjct: 102 KSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160
Query: 1386 AQTASILQNAIS--SECKGMTVITIAHRISTVLNM-DEILILDHGHLVC 1431
I+ + + ++ + MTV+ H+ + V+ + ++ L+L+ +
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-21
Identities = 51/197 (25%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP- 677
+N + Q++ L KG ++AV+G+ G GKS+LL+ +LG G I SI +VPQ
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFS 76
Query: 678 WILSGTIRDNILFGKNYDP-QSYSETLKACTLDVDISL----MVGGDMAYIGEKGVN-LS 731
+ ++ D +L G++ + K+ D +++ + + ++ ++ LS
Sbjct: 77 SPFAYSVLDIVLMGRS--THINTFAKPKS--HDYQVAMQALDYLN--LTHLAKREFTSLS 130
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV- 790
GGQR + +ARA+ + +LD+ SA+D +LS I T + TH
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 791 QAISAADMVVVMDKGQV 807
Q ++ A+ ++++K
Sbjct: 191 QVVAIANKTLLLNKQNF 207
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-19
Identities = 44/239 (18%), Positives = 80/239 (33%), Gaps = 26/239 (10%)
Query: 1214 PFQGL-------IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1266
PF + +VT RY + + T G +G+VG G GKS+ L L
Sbjct: 66 PFDAIQIINLPTNLEAHVTHRYSAN--SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKIL 123
Query: 1267 FRLTPICGGQILV-----------DGLNIINTPVRDLRGRFAVVPQSPFL-FEGSLRDNL 1314
G+ G + N + L + + ++
Sbjct: 124 AGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183
Query: 1315 DPFHM-NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373
L++ E VK ++ + LE +K S G+ Q + + ++ +
Sbjct: 184 VQKVGELLKLRMEKSPED--VKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241
Query: 1374 VLCLDECTANVDAQTASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
V DE ++ +D + I S VI + H +S + + D + I+ V
Sbjct: 242 VYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 2e-18
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW- 678
+ VLN ++ ++GE G+GK++L+ + G + G +++ PQ
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 679 --------ILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 729
+ IR L +PQ ++ +K +D ++ ++ V +
Sbjct: 425 KFPGTVRQLFFKKIRGQFL-----NPQFQTDVVKPLRID---DII---------DQEVQH 467
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTH 788
LSGG+ R+A+ A+ +DIY++D+ + +D++ R I S I + +KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-RIICSKVIRRFILHNKKTAFIVEH 526
Query: 789 NVQAISA-ADMVVVMDKGQVK 808
+ + AD V+V + K
Sbjct: 527 DFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 29/203 (14%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L+ + ++G G GK++++ L GQ + V
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQ 420
Query: 1295 RFAVVPQSPF--LFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGI 1352
+ A LF +R D+ V+ + ++ + +
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDV--------------VKPLRIDDIIDQEVQ 466
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1408
S G+ Q + + AL + + +DE +A +D + +++ I T +
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH--NKKTAFIV 524
Query: 1409 AHRISTVLNM-DEILILDHGHLV 1430
H + D++++ +
Sbjct: 525 EHDFIMATYLADKVIVFEGIPSK 547
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 7e-10
Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 58/230 (25%)
Query: 618 EQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-------- 669
N G ++ ++G G GKS+ L + G+ G
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF 147
Query: 670 ----------------------IAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACT 707
YV +P + G ++ + + E +K
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ-KVGELLKLRMEKSPEDVKRYI 206
Query: 708 LDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQ 763
+ + ++ I + LSGG+ R A+ + +D+YM D+ S +D
Sbjct: 207 KILQLENVLK---RDIEK----LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLN 259
Query: 764 VARWILSNAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVMDKGQV 807
A+ I S L K I H+ + + +D V ++
Sbjct: 260 AAQIIRS--------LLAPTKYVICVEHDLSVLDYL--SDFVCIIYGVPS 299
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 3e-19
Identities = 61/251 (24%), Positives = 112/251 (44%), Gaps = 31/251 (12%)
Query: 1199 PQEELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTG 1256
+ S D + +I+ N+T + AL++++ + G G++G +G
Sbjct: 5 HHHHHHHHSSGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASG 64
Query: 1257 AGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG---RFAVVPQSPFLFEG-SLRD 1312
AGKS+++ + L G +LVDG + +L + ++ Q L ++
Sbjct: 65 AGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124
Query: 1313 NLD-PFHMNDDLKIWSVLE---KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLIC 1363
N+ P L++ + + K V E + VGL SG GQ+Q +
Sbjct: 125 NVALP------LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG-----GQKQRVA 173
Query: 1364 LARALLKSSKVLCLDECTANVDAQ-TASILQ--NAISSECKGMTVITIAHRISTVLNM-D 1419
+ARAL + KVL D+ T+ +D T SIL+ I+ G+T++ I H + V + D
Sbjct: 174 IARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICD 232
Query: 1420 EILILDHGHLV 1430
+ ++ +G L+
Sbjct: 233 CVAVISNGELI 243
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-08
Identities = 60/230 (26%), Positives = 95/230 (41%), Gaps = 54/230 (23%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 669 ----SIAYVPQVPWILSG-TIRDNILF-------GKNYDPQSYSETLKACTLDVDISLMV 716
I + Q +LS T+ N+ K+ + +E L +V
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLS----------LV 151
Query: 717 GGDMAYIGEKG----VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS-- 770
G +G+K NLSGGQ+ R+A+ARA+ + + D SA+D R IL
Sbjct: 152 G-----LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 771 ---NAIMGPHMLQKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSSADL 816
N +G T +L TH + + D V V+ G++ + +++
Sbjct: 207 KDINRRLG-----LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 4e-19
Identities = 39/220 (17%), Positives = 76/220 (34%), Gaps = 19/220 (8%)
Query: 1223 NVTMRYKPSLPAALHDINF-TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
V RYK + T + T +G++G+ G GK+++L L G +
Sbjct: 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NS 58
Query: 1282 LNIINTPVRDLRG-RFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH------- 1333
+ ++ RG + + L+ ++ K
Sbjct: 59 KVGKDEVLKRFRGKEIYNYFKELY--SNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116
Query: 1334 --VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
E E + + + S G Q + +A +LL+ + V D+ ++ +D +
Sbjct: 117 GKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMN 176
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ AI K VI + H + + + D I I+ V
Sbjct: 177 MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV 216
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 35/198 (17%), Positives = 74/198 (37%), Gaps = 27/198 (13%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L N + G +GI+G G GK++ L G + + +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---------- 332
Query: 1295 RFAVVPQSPFL-FEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEV-EAVGLETFVKESGI 1352
+ PQ F ++G+++ L ++ ++ EEV + + L ++ +
Sbjct: 333 --SYKPQRIFPNYDGTVQQYL------ENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVITI 1408
S G+ Q + +A L K + + LD+ ++ +D A ++ + I
Sbjct: 385 DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE--RKAVTFII 442
Query: 1409 AHRISTVLNM-DEILILD 1425
H +S + D I++
Sbjct: 443 DHDLSIHDYIADRIIVFK 460
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-15
Identities = 41/205 (20%), Positives = 81/205 (39%), Gaps = 29/205 (14%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVP 677
+ L + +G ++ ++G G GK++ ++GE+ GS+ ++Y PQ
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRI 339
Query: 678 WI-----LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-NLS 731
+ + + + + + E K L L+ E V +LS
Sbjct: 340 FPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH---RLL---------ESNVNDLS 387
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILCT 787
GG+ +L +A + +D+Y+LD S +D VA+ I + +
Sbjct: 388 GGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT----RERKAVTFIID 443
Query: 788 HNVQAISA-ADMVVVMDKGQVKWIG 811
H++ AD ++V KG+ + G
Sbjct: 444 HDLSIHDYIADRIIVF-KGEPEKAG 467
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 38/203 (18%), Positives = 76/203 (37%), Gaps = 38/203 (18%)
Query: 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-----------HASGS-IAYVPQVPWI 679
+++ V+G+ G GK+++L + GE++ G G I +
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL-- 81
Query: 680 LSGTIRDNILFGKNYDPQSYSETLKACTLD----VDISLMVGG-----DMAYIGEKGV-N 729
+ I+ K + S+ LK + +D +M + K
Sbjct: 82 --YSNELKIVH-KIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR--ILCT 787
LSGG RL +A ++ +D+Y+ D S +D + + AI L K + I+
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMA-KAI---RELLKNKYVIVVD 194
Query: 788 HN---VQAISAADMVVVMDKGQV 807
H+ + + D++ ++
Sbjct: 195 HDLIVLDYL--TDLIHIIYGESS 215
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 2e-18
Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 33/233 (14%)
Query: 1218 LIEFQNVTMRY---KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICG 1274
++ +N+ + K AL ++ ++ G I+G G+GKS+++N +
Sbjct: 7 ILRTENIVKYFGEFK-----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61
Query: 1275 GQILVDGLNIINTPVRDL--RG--R-FAVVPQSPFLFEG-SLRDN-LDPFHMNDDLKIWS 1327
G++ + +I N +L G R F Q+P + ++ +N L + + S
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF----QTPQPLKEMTVLENLLIGEICPGESPLNS 117
Query: 1328 VLEKCHVKEEVEA----------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL 1377
+ K + +E E + L S GQ +L+ + RAL+ + K++ +
Sbjct: 118 LFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177
Query: 1378 DECTANVDAQTASILQNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHG 1427
DE A V A + N + KG+T + I HR+ VLN D + ++ +G
Sbjct: 178 DEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIVLNYIDHLYVMFNG 229
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 52/223 (23%)
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP------- 674
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++ I
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 675 ------QVPWILSG-TIRDNILFGKNYDPQSYSETL--------------KACTL--DVD 711
Q P L T+ +N+L G+ +S +L KA + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
+S K LSGGQ + + RA+ + ++D+ ++ V L++
Sbjct: 143 LS-------HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG-----LAH 190
Query: 772 AIMGPHMLQKTR------ILCTHNVQAISA-ADMVVVMDKGQV 807
I + + + + ++ H + + D + VM GQ+
Sbjct: 191 DIF--NHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-18
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 26/218 (11%)
Query: 1222 QNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----G 1275
++ RY + A + ++ G VGIVG G GK++ + L +L P
Sbjct: 95 EDCVHRYGVN--AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1276 QILVDGLNI--INTPVRDLR-GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSV 1328
++ + L+ G V + ++ +L P + + LK
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYV-------DLLPKAVKGKVRELLKKVDE 205
Query: 1329 LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
+ K +E V+ + LE + S G+ Q + +A ALL+ + DE ++ +D +
Sbjct: 206 VGK--FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 1389 ASILQNAISS-ECKGMTVITIAHRISTVLNM-DEILIL 1424
+ I +G V+ + H ++ + + D I ++
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 37/217 (17%), Positives = 79/217 (36%), Gaps = 36/217 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
L+E+ + Y L I G +GIVG G GK++ + L + G++
Sbjct: 357 LVEYPRLVKDYGSF---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHV 1334
D V + ++ + +L S L
Sbjct: 414 EWDL---------------TVAYKPQYI-------KAEYEGTVYELLSKIDSSKLNSNFY 451
Query: 1335 KEEV-EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTA 1389
K E+ + +G+ + S G+ Q + +A LL+ + + LDE +A +D +
Sbjct: 452 KTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 1390 SILQNAISSECKGMTVITIAHRISTVLNM-DEILILD 1425
+++ + T + + H + + + D +++ +
Sbjct: 512 RAIRHLMEK--NEKTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 46/206 (22%), Positives = 83/206 (40%), Gaps = 35/206 (16%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 675
+ L + KG ++ ++G G GK++ + + G T G + ++AY PQ
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKA 428
Query: 676 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730
V +LS + +E LK + V +L
Sbjct: 429 EYEGTVYELLSKIDSSKLN-----SNFYKTELLKPLGIIDLYDRNVE-----------DL 472
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRILC 786
SGG+ R+A+A + +DIY+LD+ + +D V+R I +KT ++
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM----EKNEKTALVV 528
Query: 787 THNVQAISA-ADMVVVMDKGQVKWIG 811
H+V I +D ++V + G+ G
Sbjct: 529 EHDVLMIDYVSDRLIVFE-GEPGRHG 553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 41/164 (25%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS----------- 667
N + + G +V ++G G+GK++ + + G+++ + S
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 668 -----------GSIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
G I V + +P + G +R+ L K + + E +K ++
Sbjct: 163 ELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRE--LLKKVDEVGKFEEVVK----EL 216
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLD 754
++ ++ + + LSGG+ R+A+A A+ + Y D
Sbjct: 217 ELENVLD---RELHQ----LSGGELQRVAIAAALLRKAHFYFFD 253
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-18
Identities = 45/217 (20%), Positives = 89/217 (41%), Gaps = 26/217 (11%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICG-----GQ 1276
+ RY + L+ + ++ G VGIVG G GKS+ + L +L P
Sbjct: 26 DCVHRYGVN-AFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 1277 ILVDGLNIINTPVRDLR---GRFAVVPQSPFLFEGSLRDNLDPFHM----NDDLKIWSVL 1329
++ + G V + ++ +L P + + LK
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV-------DLIPKAVKGKVIELLKKADET 136
Query: 1330 EKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTA 1389
K ++E V+A+ LE ++ S G+ Q + +A ALL+++ DE ++ +D +
Sbjct: 137 GK--LEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQR 194
Query: 1390 SILQNAISS-ECKGMTVITIAHRISTVLNM-DEILIL 1424
AI +G +V+ + H ++ + + D I ++
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV 231
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 9e-17
Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 33/200 (16%)
Query: 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294
L I+ G +GIVG G GK++ + L + G+I D
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------- 347
Query: 1295 RFAVVPQSPFLFEGSLRDNLDPFHMNDDL---KIWSVLEKCHVKEEV-EAVGLETFVKES 1350
V + ++ D +L S L K E+ + +G+
Sbjct: 348 --TVAYKPQYIK-------ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDRE 398
Query: 1351 GISFSVGQRQLICLARALLKSSKVLCLDECTANVD----AQTASILQNAISSECKGMTVI 1406
S G+ Q + +A LL+ + + LDE +A +D + +++ + T +
Sbjct: 399 VNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTAL 456
Query: 1407 TIAHRISTVLNM-DEILILD 1425
+ H + + + D +++ +
Sbjct: 457 VVEHDVLMIDYVSDRLMVFE 476
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-15
Identities = 46/204 (22%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQ---- 675
+ L + KG ++ ++G G GK++ + + G T G I ++AY PQ
Sbjct: 299 SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA 358
Query: 676 -----VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV-N 729
V +LS + +E LK + L ++ V
Sbjct: 359 DYEGTVYELLSKIDASKLN-----SNFYKTELLKPLGII---DLY---------DREVNE 401
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVD----AQVARWILSNAIMGPHMLQKTRIL 785
LSGG+ R+A+A + +DIY+LD+ + +D V+R + + + +KT ++
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR-AIRHLMEK---NEKTALV 457
Query: 786 CTHNVQAISA-ADMVVVMDKGQVK 808
H+V I +D ++V + K
Sbjct: 458 VEHDVLMIDYVSDRLMVFEGEPGK 481
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 37/218 (16%), Positives = 82/218 (37%), Gaps = 53/218 (24%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
N + + +G +V ++G G+GKS+ + + G+++ + S
Sbjct: 33 VNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGN 92
Query: 669 ------------SIAYVPQ------VPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV 710
I V + +P + G + + + K + E +K +
Sbjct: 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVK----AL 146
Query: 711 DISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILS 770
++ ++ I LSGG+ R+A+A A+ + Y D+ S +D +
Sbjct: 147 ELENVLE---REIQH----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA- 198
Query: 771 NAIMGPHMLQ---KTRILCTHN---VQAISAADMVVVM 802
AI L K+ ++ H+ + + +D++ V+
Sbjct: 199 RAI---RRLSEEGKSVLVVEHDLAVLDYL--SDIIHVV 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.4 bits (197), Expect = 2e-16
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 28/175 (16%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1278 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ +G +I N P + A+VP+ +F ++ +NL + ++ +K +K
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL-------MMGAYNRKDKEGIK 116
Query: 1336 EEVEAVGLETF--VKE---------SGISFSVGQRQLICLARALLKSSKVLCLDE 1379
++E + F +KE SG G++Q++ + RAL+ K+L +DE
Sbjct: 117 RDLEWI-FSLFPRLKERLKQLGGTLSG-----GEQQMLAIGRALMSRPKLLMMDE 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 51/227 (22%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS------------ 669
+ + L +P+G +V +IG G+GK++ L++I G + G I +G
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 670 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAY---- 722
IA VP+ I T+ +N++ G +Y+ K + D+ + +
Sbjct: 81 MGIALVPEGRRIFPELTVYENLMMG------AYNRKDKE-GIKRDL------EWIFSLFP 127
Query: 723 -----IGEKGVNLSGGQRARLALARAVYHGSDIYMLDDV---LS-AVDAQVARWILSNAI 773
+ + G LSGG++ LA+ RA+ + M+D+ L+ + ++V I
Sbjct: 128 RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187
Query: 774 MGPHML---QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLA 817
G +L Q A+ A V++ GQ+ G +++L
Sbjct: 188 EGTTILLVEQNAL-------GALKVAHYGYVLETGQIVLEGKASELL 227
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-16
Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 57/231 (24%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
VLN +SL L G ++ +IG G GK++LL + G G I SG
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 669 ---SIAYVPQVPWILSG------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG- 717
+ Y+ Q G T+ NI +G ++ + ++ L + G
Sbjct: 78 RERRLGYLVQ-----EGVLFPHLTVYRNIAYGLGNGKGRTAQERQR----IEAMLELTGI 128
Query: 718 GDMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSN 771
++A Y E LSGGQ+ R ALARA+ ++ +LD+ SA+D Q+ +++
Sbjct: 129 SELAGRYPHE----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA- 183
Query: 772 AIMGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 816
+ + + +H+ + A+ AD + VM +G++ S +L
Sbjct: 184 -------ALRANGKSAVFVSHD-REEALQYADRIAVMKQGRILQTASPHEL 226
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-11
Identities = 46/251 (18%), Positives = 94/251 (37%), Gaps = 74/251 (29%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ +++ ++ + L+DI+ +++ G + I+G +G GK+++L L G+I
Sbjct: 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1278 LVDGLNIINTPVRDL---RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE---- 1330
+ G I + +L R + Q LF P H+ +V
Sbjct: 62 SLSG-KTIFSKNTNLPVRERRLGYLVQEGVLF---------P-HL-------TVYRNIAY 103
Query: 1331 ------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSK 1373
+ ++ +E G+ SG GQ+Q LARAL +
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSG-----GQQQRAALARALAPDPE 158
Query: 1374 VLCLDECTANVDAQ--------TASILQNAISSECKGMTVITIAH------RISTVLNMD 1419
++ LDE + +D Q + L+ G + + ++H + + D
Sbjct: 159 LILLDEPFSALDEQLRRQIREDMIAALRAN------GKSAVFVSHDREEALQYA-----D 207
Query: 1420 EILILDHGHLV 1430
I ++ G ++
Sbjct: 208 RIAVMKQGRIL 218
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-15
Identities = 55/229 (24%), Positives = 93/229 (40%), Gaps = 53/229 (23%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVP--- 674
+ VS + +G +V ++G GSGK+++L I G T G + G + +P
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86
Query: 675 -QVPWILSG------------TIRDNILFGKNYDPQSYSETLKACTLDVDISL-MVG-GD 719
V G T+ DN+ FG E V L +
Sbjct: 87 RNV-----GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR----VRELLRFMRLES 137
Query: 720 MA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQV----ARWILSNAI 773
A + E LSGGQ+ R+ALARA+ + + D+ +A+D Q+ ++
Sbjct: 138 YANRFPHE----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ--- 190
Query: 774 MGPHMLQK----TRILCTHNVQ--AISAADMVVVMDKGQVKWIGSSADL 816
+ T + TH+ Q A+ AD V+V+ +G V+ G+ ++
Sbjct: 191 -----VHDEMGVTSVFVTHD-QEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
IEF V Y + + ++F I G VG++G +G+GK++IL + L G +
Sbjct: 15 IEFVGVEKIYPGGARS-VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKI--WSVLE 1330
+ G + + P + R +V Q+ LF HM D+ L+ E
Sbjct: 74 IGGKRVTDLPPQK-RN-VGLVFQNYALF---------Q-HMTVYDNVSFGLREKRVPKDE 121
Query: 1331 -KCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
V+E + + LE++ S GQ+Q + LARAL +VL DE A +D Q
Sbjct: 122 MDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 3e-13
Identities = 56/233 (24%), Positives = 104/233 (44%), Gaps = 46/233 (19%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1278 LVDGLNIINTPV--RDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVL 1329
L+DG ++ + D+ A V Q+ LF P HMN + +++ +
Sbjct: 58 LLDGKDVTDLSPEKHDI----AFVYQNYSLF---------P-HMNVKKNLEFGMRMKKIK 103
Query: 1330 EKCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ V + + +E + SG G++Q + LARAL+ + K+L LDE + +
Sbjct: 104 DPKRVLDTARDLKIEHLLDRNPLTLSG-----GEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 1385 DAQTASILQNAISSECK------GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
D +T + +TV+ I H + M D I ++ G L+
Sbjct: 159 DPRTQENARE----MLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 9e-12
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-SIAYVPQVPW 678
N L+ +SL + G ++G G+GK+ L I G + G I G + + P
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--PE 70
Query: 679 ---ILSG------------TIRDNILFG----KNYDPQSYSETLKACTLDVDISLMVG-G 718
I ++ N+ FG K DP+ +T + +
Sbjct: 71 KHDI--AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR----------DLKIE 118
Query: 719 DMA--YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGP 776
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + +
Sbjct: 119 HLLDRNPLT----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRT-QENAREMLS-- 171
Query: 777 HMLQK----TRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
+L K T + TH+ +A AD + V+ G++ +G ++
Sbjct: 172 -VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 41/210 (19%)
Query: 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS-----------IAYVPQ---- 675
++G G+GKS L I G + G + +G+ I +VPQ
Sbjct: 22 MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81
Query: 676 VPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVG-GDMA--YIGEKGVNLS 731
P + ++ NI +G +N + ++ + +G + LS
Sbjct: 82 FPHL---SVYRNIAYGLRNVERVERDRRVRE-MAE-----KLGIAHLLDRKPAR----LS 128
Query: 732 GGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK----TRILCT 787
GG+R R+ALARA+ + +LD+ LSAVD + + +L + +Q+ + T
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKT-KGVLMEELR---FVQREFDVPILHVT 184
Query: 788 HN-VQAISAADMVVVMDKGQVKWIGSSADL 816
H+ ++A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 29/219 (13%)
Query: 1223 NVTMRYKPSLPAALHDINFTIEGGTQ-VGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281
R +N E G ++G TGAGKS L + + G++ ++G
Sbjct: 6 RAEKRLGN------FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59
Query: 1282 LNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSVLE-KCHV 1334
+I P RG VPQ LF P H++ + L+ +E V
Sbjct: 60 ADITPLPPER-RG-IGFVPQDYALF---------P-HLSVYRNIAYGLRNVERVERDRRV 107
Query: 1335 KEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQN 1394
+E E +G+ + S G+RQ + LARAL+ ++L LDE + VD +T +L
Sbjct: 108 REMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 1395 AISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ + + ++ + H + + DE+ ++ +G +V
Sbjct: 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV 206
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 1e-11
Identities = 48/291 (16%), Positives = 88/291 (30%), Gaps = 21/291 (7%)
Query: 501 VFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFI 560
+ S + L+ + A + ++ + L A+
Sbjct: 333 AIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGADL---IDERIIDQQAWF 389
Query: 561 SIRRLTRFLGCSEYKHELEQAANSPSYISNGLSNFNSKDMAVIMQDATCSWYCNNEEEQN 620
+ + E K + + N N D +D + +
Sbjct: 390 THITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI 449
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
++ L L + + G G GKS+L+ +I + YV
Sbjct: 450 LLNK-TQLRLKRARRYGICGPNGCGKSTLMRAIANGQ-VDGFPTQEECRTVYVEHDIDGT 507
Query: 681 SG--TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARL 738
++ D + ++ + L G I LSGG + +L
Sbjct: 508 HSDTSVLDFVFESGVGTKEAIKDKLIE----------FGFTDEMIAMPISALSGGWKMKL 557
Query: 739 ALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789
ALARAV +DI +LD+ + +D W L N + T I +H+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAW-LVNYLNT---CGITSITISHD 604
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 9e-10
Identities = 48/208 (23%), Positives = 79/208 (37%), Gaps = 47/208 (22%)
Query: 1236 LHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295
L+ ++ + GI G G GKS+++ A I GQ VDG R
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRA------IANGQ--VDGFPTQE------ECR 496
Query: 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH---------VKEEVEAVGL--E 1344
V SVL+ +K+++ G E
Sbjct: 497 TVYVEHDIDGTHSDT----------------SVLDFVFESGVGTKEAIKDKLIEFGFTDE 540
Query: 1345 TFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMT 1404
+ S G + + LARA+L+++ +L LDE T ++D + L N +++ C T
Sbjct: 541 MIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-CGI-T 597
Query: 1405 VITIAHRISTVLN--MDEILILDHGHLV 1430
ITI+H S L+ + I+ + L
Sbjct: 598 SITISH-DSVFLDNVCEYIINYEGLKLR 624
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-05
Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 1173 GNFLSSFTETEKEMVSLERV----LEYMDVPQEELCGYQSLSPDWPFQGLIEFQNVTMRY 1228
GN + F + + E + LE+ L G ++ + +++ N+ +Y
Sbjct: 628 GN-FTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQ-----KAIVKVTNMEFQY 681
Query: 1229 KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ + DINF +++ ++G GAGKS+++N L G++
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 7e-05
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--HASGSIAYVPQ 675
+ ++ S +AVIG G+GKS+L+N + GE++ T G + H + IAY+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQ 743
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGGQ+ +L LA + + +LD+ + +D LS A+ + I+ TH
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGA-LSKALKE---FEGGVIIITH 956
Query: 789 NVQAISA-ADMVVVMDKGQVK 808
+ + + V + G++
Sbjct: 957 SAEFTKNLTEEVWAVKDGRMT 977
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 1353 SFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR- 1411
S GQ+ + LA + ++ LDE T +D + L A+ +G VI I H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EG-GVIIITHSA 958
Query: 1412 --ISTVLNMDEILILDHGHLV 1430
+ +E+ + G +
Sbjct: 959 EFTKNL--TEEVWAVKDGRMT 977
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 26/182 (14%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 1279 VDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMN--DD----LKIWSV 1328
D + + + R +V Q+ L+ P ++ ++ L +
Sbjct: 64 FDDRLVASNGKLIVPPEDRK-IGMVFQTWALY---------P-NLTAFENIAFPLTNMKM 112
Query: 1329 ----LEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
+ K V+E + + + + S Q+Q + LARAL+K +L LDE +N+
Sbjct: 113 SKEEIRK-RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1385 DA 1386
DA
Sbjct: 172 DA 173
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 51/248 (20%)
Query: 600 MA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658
M +I+++ + + V L+ V++ + G ++G G+GK++ + I G +
Sbjct: 1 MVRIIVKNVSKVFKKGK----VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV 56
Query: 659 LTHGSIHASGS----------------IAYV-------PQVPWILSGTIRDNILFG---K 692
+ G ++ I V P + T +NI F
Sbjct: 57 PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL------TAFENIAFPLTNM 110
Query: 693 NYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDI 750
+ + ++ A LD+ + LSG Q+ R+ALARA+ +
Sbjct: 111 KMSKEEIRKRVEEVAKILDIH---------HVLNHFPRELSGAQQQRVALARALVKDPSL 161
Query: 751 YMLDDVLSAVDAQVARWILSNAIMGPHM-LQKTRILCTHN-VQAISAADMVVVMDKGQVK 808
+LD+ S +DA++ R + L T ++ +H+ + AD V V+ KG++
Sbjct: 162 LLLDEPFSNLDARM-RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
Query: 809 WIGSSADL 816
+G DL
Sbjct: 221 QVGKPEDL 228
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-11
Identities = 53/187 (28%), Positives = 80/187 (42%), Gaps = 38/187 (20%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+I+ + + L IN I G V ++G +G+GKS+ L L L G+I
Sbjct: 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1278 LVDGLNIIN--TPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKC--- 1332
++DG+N+ T + +R +V Q F NL P HM +VL
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQR-F--------NLFP-HM-------TVLNNITLA 124
Query: 1333 --HV----KEEVEA--------VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLD 1378
V +E+ EA VGL+ S S GQ Q + +ARAL K++ D
Sbjct: 125 PMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 1379 ECTANVD 1385
E T+ +D
Sbjct: 185 EPTSALD 191
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 62/225 (27%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICGGQ 1276
++ +N+ + L I+ +++ G V I+G +G+GKS++L L L P G+
Sbjct: 4 ILRAENIKKVIRGY--EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGK 60
Query: 1277 ILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLE-- 1330
+ ++G + T ++L + V Q ++ +L + LE
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQF--------------HYLIPEL---TALENV 103
Query: 1331 --------------KCHVKEEVEAVGLETFVKE-----SGISFSVGQRQLICLARALLKS 1371
K + + +GL + SG G++Q + +ARAL
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSG-----GEQQRVAIARALANE 158
Query: 1372 SKVLCLDECTANVDAQTA----SILQ--NAISSECKGMTVITIAH 1410
+L DE T N+D+ I N G +++ + H
Sbjct: 159 PILLFADEPTGNLDSANTKRVMDIFLKINE-----GGTSIVMVTH 198
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
+L +SL + KG V++IG GSGKS+LL ILG
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG 51
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 33/215 (15%)
Query: 1218 LIEFQNVTMRYK--PSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL-TPICG 1274
+++ +NVT YK + AL ++N I+ G V I+G +G+GKS++LN + L P
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-TE 59
Query: 1275 GQILVDGLNIINTPVRDL----RGRFAVVPQS----PFLFEGSLRDNLD-PFHMNDDLKI 1325
G++ +D + + +L R + V Q P L + +N++ P +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGAM 116
Query: 1326 WSVLEKCHVKEEVEAVGLETFVKE------SGISFSVGQRQLICLARALLKSSKVLCLDE 1379
+ E ++ LE SG GQ+Q + +ARAL + ++ D+
Sbjct: 117 SGEERRKRALECLKMAELEERFANHKPNQLSG-----GQQQRVAIARALANNPPIILADQ 171
Query: 1380 CTANVDAQTA----SILQNAISSECKGMTVITIAH 1410
T +D++T +L+ ++ E G TV+ + H
Sbjct: 172 PTWALDSKTGEKIMQLLKK-LNEE-DGKTVVVVTH 204
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 617 EEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655
EE L V+L + +G V+++G GSGKS++LN I+G
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG 52
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 3e-09
Identities = 87/581 (14%), Positives = 174/581 (29%), Gaps = 144/581 (24%)
Query: 568 FLGCSEYKHELEQ-AANSPSYIS--NGLSNFNS--KDMAVIMQDATCSWYCNNEEEQNVV 622
FL S K E Q + + YI + L N N V + + +
Sbjct: 93 FL-MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV------------SRLQPYLK 139
Query: 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSG 682
L Q L L V + G +GSGK+ + + L++ ++ W+
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDF-----KIFWL--- 187
Query: 683 TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742
N P++ E L+ +D + D + + ++ S R L
Sbjct: 188 ----N--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKS 240
Query: 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAI-MGPHMLQKTR------ILCTHNVQAISA 795
Y + +L +V +A NA + +L TR L IS
Sbjct: 241 KPYENCLL-VLLNVQNA-------KAW-NAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 796 ADMVVVMDKGQV-----KWIGSSAD-----------LAVSLYSGFWS--TNEFDTSLHMQ 837
+ + +V K++ +S+ + +D H+
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 838 KQEMRTNASSANKQILLQEKDVVSVSDDAQEIIEVEQRKEGRVELTVYKNYAKFSGWFIT 897
++ T ++ S + E E + + L+V+ A I
Sbjct: 352 CDKLTT---------------IIESSLNVLEPAEYRKMFD---RLSVFPPSAH-----IP 388
Query: 898 L-VICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRA 956
++ L +W S +V L +
Sbjct: 389 TILLSL-------------IW----------FDVIKSDVMVVVNKLH----KYSLVEKQP 421
Query: 957 FSFAFGSLRAAVKVHN---TLLTKIVNAPVLFFDQTPGGRILNRFS-SDLYMIDDSLPFI 1012
+ + L K+ N L I++ ++ + DD +P
Sbjct: 422 KESTIS-------IPSIYLELKVKLENEYALH------RSIVDHYNIPKTFDSDDLIPPY 468
Query: 1013 LNILLANFVG--LLGIAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSR 1070
L+ + +G L I F ++ + F F+ K++ + + L+++ +
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 1071 SPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTS 1111
Y + N R + F+ K +E+++ + T
Sbjct: 527 LKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 1e-06
Identities = 68/403 (16%), Positives = 132/403 (32%), Gaps = 120/403 (29%)
Query: 192 VDGDVEEDCNTDSSYWDLM-----AF-KSID----SVMNRGVIKQLDFEDLLGLPTDMDP 241
+D + E Y D++ AF + D M + ++ + + + ++ +
Sbjct: 7 MDFETGE---HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 242 S-----TCHSK-------------------LLSCWQAQRSCNCTNPSLVRAICCAYGYPY 277
+ T SK L+S + + PS++ + Y
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE----QRQPSMMTRM-------Y 112
Query: 278 I-CLGLLKVVNDSIGFAG-----PLLLNKLIKFLQQ-------------GSGHLDGYVLA 318
I ++ ND+ FA KL + L + GSG +A
Sbjct: 113 IEQRD--RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVA 167
Query: 319 IALGLTSILKSFFDTQYSFHLSKLKLKLRSSIMTII-YQKCLYVRL----AERSEFSDGE 373
+ + L+ ++ D F + L LK +S T++ + L ++ RS+ S
Sbjct: 168 LDVCLSYKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 374 IQTFMSVDTDRTVNLANSFH--------DAWSL----PFQIGVALYLLYTQVK--FAFVS 419
S+ + L + + + + F + + LL T+ K F+S
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLS 282
Query: 420 GLAITILLIPVNKWIANLIANATE----KMMKQKDERIRRTGEIL-THIRTLKMYG---- 470
T I ++ L + + K + + + + R E+L T+ R L +
Sbjct: 283 AATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIR 338
Query: 471 --------WEQIFSSWLMKTRSSEVKHLST---RKYLDAWCVF 502
W+ + L S + L RK D VF
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 5e-04
Identities = 88/546 (16%), Positives = 154/546 (28%), Gaps = 166/546 (30%)
Query: 745 YHGSDI--YMLDDVLSAVDAQ----VARWILSNA-----IMGPHMLQKTR----ILCTHN 789
Y DI D + D + + + ILS IM + T L +
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 790 VQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFWSTNEFDTSLHMQKQEMRTNASSAN 849
+ + V + + K++ S T + S+ + + + +
Sbjct: 76 EEMV--QKFVEEVLRINYKFLMSP-----------IKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 850 KQILLQEKDVVSVSDDAQEIIEV--EQRKEGRVELTVY--KNYAKFSGWFITLVICLSAI 905
Q+ K VS ++ + E R V + K ++ L +CLS
Sbjct: 123 NQVF--AKYNVSRLQPYLKLRQALLELRPAKNV--LIDGVLGSGK---TWVALDVCLSYK 175
Query: 906 LMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFSFAFGSLR 965
+ Q + WL+ +
Sbjct: 176 V-QCKMDFKIFWLN-----------------------------------------LKNCN 193
Query: 966 AAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLG 1025
+ T+L + L + P + SS++ + S+ L LL +
Sbjct: 194 SP----ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS------ 240
Query: 1026 IAVVLSYVQVFFLLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSS 1085
Y LLV L +V + + +F N S
Sbjct: 241 ----KPYENC----LLV----------------------LLNVQNAKAWNAF----NLSC 266
Query: 1086 TI----RAFKSEDYFMAKFKEHVVL--YQRTSYSELTASL---WLSLRLQLLAA------ 1130
I R + D+ A H+ L + T + SL +L R Q L
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1131 -FIISFIATMAVIGSRGNLPATFSTPG------LVGLALSYAAPIVSLLGNF--LSSFTE 1181
+S IA I + ++ +L+ P F LS F
Sbjct: 327 PRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPP 383
Query: 1182 TEK--EMVSLERV---LEYMDVPQ--EELCGYQSLSPDWPFQGLIEFQNVTMRYKPSLP- 1233
+ ++ L + + DV +L Y SL P + I ++ + K L
Sbjct: 384 SAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 1234 -AALHD 1238
ALH
Sbjct: 442 EYALHR 447
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 50/200 (25%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I
Sbjct: 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 1278 LVDGLNIINTP-------------VRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1324
+V+G NI +R LR R +V Q F NL HM
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH-F--------NLWS-HM----- 108
Query: 1325 IWSVLEKC-----HV----KEEVEA--------VGLETFVKE------SGISFSVGQRQL 1361
+VLE V K + VG++ + SG GQ+Q
Sbjct: 109 --TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG-----GQQQR 161
Query: 1362 ICLARALLKSSKVLCLDECT 1381
+ +ARAL VL DE T
Sbjct: 162 VSIARALAMEPDVLLFDEPT 181
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 45/182 (24%), Positives = 89/182 (48%), Gaps = 31/182 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I+ +N+ ++ + A L++IN I+ G + ++G +G+GKS++L + + G+I
Sbjct: 4 IKLENIVKKF-GNFTA-LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
D ++ P +D R +V Q+ P + ++ N + L++ + +
Sbjct: 62 FDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKN-----IAFPLEL-RKAPREEI 110
Query: 1335 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
++V V ++ + SG GQ+Q + +ARAL+K +VL LDE +N+D
Sbjct: 111 DKKVREVAKMLHIDKLLNRYPWQLSG-----GQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Query: 1386 AQ 1387
A
Sbjct: 166 AL 167
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 55/228 (24%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
LN ++L + G +A++G GSGKS+LL +I G T G I+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76
Query: 670 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
+ V P + T+ NI F + + + ++ A L +D
Sbjct: 77 VGLVFQNWALYPHM------TVYKNIAFPLELRKAPREEIDKKVREVAKMLHID------ 124
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 769
+ LSGGQ+ R+A+ARA+ ++ +LD+ LS +DA ++ R L
Sbjct: 125 ---KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR--L 179
Query: 770 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T + TH+ +A++ AD + V+ +G++ +G+ ++
Sbjct: 180 Q------KELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEV 221
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-08
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 31/181 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T R+ + A ++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 12 VKLENLTKRF-GNFTA-VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
++ P +D R ++V QS P + ++ +N + LKI K +
Sbjct: 70 FGDRDVTYLPPKD-RN-ISMVFQSYAVWPHM---TVYEN-----IAFPLKI-KKFPKDEI 118
Query: 1335 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ V +E + + SG GQRQ + +ARA++ VL +DE +N+D
Sbjct: 119 DKRVRWAAELLQIEELLNRYPAQLSG-----GQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
Query: 1386 A 1386
A
Sbjct: 174 A 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 62/257 (24%)
Query: 593 SNFNSKDMA-VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLN 651
+N M V +++ T + +N+++L + G + ++G G GK++ L
Sbjct: 2 NNIEVIKMVEVKLENLTKRF------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLR 55
Query: 652 SILGEMMLTHGSIHASGS-----------IAYV-------PQVPWILSGTIRDNILFG-- 691
I G T G I+ I+ V P + T+ +NI F
Sbjct: 56 MIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM------TVYENIAFPLK 109
Query: 692 -KNYDPQSYSETLK--ACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGS 748
K + + ++ A L ++ + LSGGQR R+A+ARA+
Sbjct: 110 IKKFPKDEIDKRVRWAAELLQIE---------ELLNRYPAQLSGGQRQRVAVARAIVVEP 160
Query: 749 DIYMLDDVLSAVDA--------QVARWILSNAIMGPHMLQKTRILCTHN-VQAISAADMV 799
D+ ++D+ LS +DA ++ + L L+ T I TH+ V+A++ D +
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKK--LQ------QKLKVTTIYVTHDQVEAMTMGDRI 212
Query: 800 VVMDKGQVKWIGSSADL 816
VM++GQ+ IGS ++
Sbjct: 213 AVMNRGQLLQIGSPTEV 229
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 45/191 (23%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ +V + + A + +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 4 VRLVDVWKVF-GEVTA-VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD------N--LDPFHMN--DD----LK 1324
+ V D V P+ RD + L P HM D+ LK
Sbjct: 62 IGD-----KLVADPEKGIFVPPKD--------RDIAMVFQSYALYP-HMTVYDNIAFPLK 107
Query: 1325 IWSVLEKCHVKEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVL 1375
+ + + + + V V GL + +E SG GQRQ + L RA+++ +V
Sbjct: 108 L-RKVPRQEIDQRVREVAELLGLTELLNRKPRELSG-----GQRQRVALGRAIVRKPQVF 161
Query: 1376 CLDECTANVDA 1386
+DE +N+DA
Sbjct: 162 LMDEPLSNLDA 172
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 49/228 (21%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680
+ ++SL + G + ++G G GK++ L I G + G I+ + P+ +
Sbjct: 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76
Query: 681 SG------------------TIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
T+ DNI F + Q + ++ A L +
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT------ 130
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 769
+ K LSGGQR R+AL RA+ ++++D+ LS +DA ++ + L
Sbjct: 131 ---ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK--L 185
Query: 770 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T I TH+ V+A++ D + VM++G ++ +GS ++
Sbjct: 186 Q------RQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I N+ + A+ ++F ++ G V ++G +G GK++ L L + G+I
Sbjct: 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
D + + + P + R +V Q+ P + ++ +N + L+ + K V
Sbjct: 62 FDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFEN-----IAFPLRA-RRISKDEV 110
Query: 1335 KEEVEAV----GLETFVKE-----SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
++ V + ++ + SG GQ+Q + LARAL+K KVL DE +N+D
Sbjct: 111 EKRVVEIARKLLIDNLLDRKPTQLSG-----GQQQRVALARALVKQPKVLLFDEPLSNLD 165
Query: 1386 A 1386
A
Sbjct: 166 A 166
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 55/228 (24%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS----------- 669
++ VS + G VA++G G GK++ L + G T G I+
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 670 IAYV-------PQVPWILSGTIRDNILFG---KNYDPQSYSETLK--ACTLDVDISLMVG 717
+ V P + T+ +NI F + + + A L +D
Sbjct: 77 VGMVFQNYALYPHM------TVFENIAFPLRARRISKDEVEKRVVEIARKLLID------ 124
Query: 718 GDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWIL 769
+ K LSGGQ+ R+ALARA+ + + D+ LS +DA ++ L
Sbjct: 125 ---NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH--L 179
Query: 770 SNAIMGPHMLQKTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
L T + TH+ +A++ A + V ++G++ G+ ++
Sbjct: 180 Q------QELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 730 LSGGQRA------RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
LSGG+R RLA++ + + +LD+ +D + R ++ +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI-TIMERYLKKIPQV 307
Query: 784 ILCTHNVQAISAADMVVVMDKG 805
IL +H+ + AAD V+ +
Sbjct: 308 ILVSHDEELKDAADHVIRISLE 329
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 1207 QSLSPDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1266
SL +W G +F T + L + V ++G+ G GKSS +N+L
Sbjct: 2 GSLVREW--VGFQQFPAAT---QEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
Query: 1267 -----FRLTPI-------CGGQILVDG--LNIINTP 1288
R++P + G +NII+TP
Sbjct: 57 IGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTP 92
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 636 VAVIGEVGSGKSSLLNSILGE 656
V V+G+ G GKSS +NS++GE
Sbjct: 39 VLVLGKGGVGKSSTVNSLIGE 59
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 2e-04
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYV 673
+ V+G++ GKS+ LN+++GE +L + + +
Sbjct: 72 LLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVL 109
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-04
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667
VAV GE GSGKSS +N++ G G+
Sbjct: 72 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 103
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-04
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 19/97 (19%)
Query: 730 LSGGQRARLALARAVYHGSDIYMLDDVLSAVDA--------QVARWILSNAIMGPH-MLQ 780
LSGGQR R+A+ R + +++LD+ LS +DA +++R L H L
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR--L-------HKRLG 184
Query: 781 KTRILCTHN-VQAISAADMVVVMDKGQVKWIGSSADL 816
+T I TH+ V+A++ AD +VV+D G+V +G +L
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 54/181 (29%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ QNVT + DIN I G V VG +G GKS++L + L I G +
Sbjct: 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQS----PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHV 1334
+ + +TP + RG +V QS P L S+ +N M+ LK+ + +K +
Sbjct: 62 IGEKRMNDTPPAE-RG-VGMVFQSYALYPHL---SVAEN-----MSFGLKL-AGAKKEVI 110
Query: 1335 KEEVEAV----GLETFV----KE-SGISFSVGQRQLICLARALLKSSKVLCLDECTANVD 1385
+ V V L + K SG GQRQ + + R L+ V LDE +N+D
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSG-----GQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Query: 1386 A 1386
A
Sbjct: 166 A 166
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 7e-04
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 636 VAVIGEVGSGKSSLLNSILGE 656
+ V+G+ G GKSS +NSI+GE
Sbjct: 42 ILVMGKGGVGKSSTVNSIIGE 62
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1446 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-68 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-49 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-64 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-45 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-59 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-42 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-59 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-45 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-57 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-42 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-55 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-54 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-36 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 9e-36 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-35 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-29 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-33 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-31 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-31 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-25 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 8e-30 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-29 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-22 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-20 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-16 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-13 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-06 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 4e-05 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 0.002 | |
| d1jwyb_ | 306 | c.37.1.8 (B:) Dynamin G domain {Dictyostelium disc | 0.002 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 0.002 | |
| d2akab1 | 299 | c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus n | 0.002 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 228 bits (582), Expect = 3e-68
Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 3/223 (1%)
Query: 1211 PDWPFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270
P QG I+ +V+ +Y + L DIN +IE G V VG +G GKS+++N + R
Sbjct: 9 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1271 PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL-DPFHMNDDLKIWSVL 1329
+ GQIL+DG NI + LR + +V Q LF ++++N+ D ++
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1330 EKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQ 1387
+ + + + + G +T V E G+ S GQ+Q + +AR L + +L LDE T+ +D +
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1388 TASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ SI+Q A+ K T + +AHR+ST+ + D+I+++++GH+V
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIV 231
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 174 bits (442), Expect = 2e-49
Identities = 61/215 (28%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ + +L ++L + KG VA +G G GKS+L+N I +T G I G
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 86
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
I V Q + S T+++NIL G + E K I + G
Sbjct: 87 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDT 146
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
+GE+GV LSGGQ+ RL++AR + I +LD+ SA+D + I + +
Sbjct: 147 EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ--EALDVLSKDR 204
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
T ++ H + I+ AD +VV++ G + G+ +L
Sbjct: 205 TTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 217 bits (553), Expect = 3e-64
Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 4/219 (1%)
Query: 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
G +EF+NVT Y AL +IN I G V +VGR+G+GKS+I + + R I G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 1276 QILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN--LDPFHMNDDLKIWSVLEKCH 1333
IL+DG ++ + LR + A+V Q+ LF ++ +N +I +
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAY 130
Query: 1334 VKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
+ + + GL+T + E+G+ S GQRQ I +ARALL+ S +L LDE T+ +D ++
Sbjct: 131 AMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 190
Query: 1392 LQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+Q A+ K T + IAHR+ST+ DEI++++ G +V
Sbjct: 191 IQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIV 229
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 161 bits (410), Expect = 3e-45
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 19/228 (8%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ L ++L +P G VA++G GSGKS++ + I + G I G
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 83
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDM 720
+A V Q + + T+ +NI + + Y + E + I+ M G
Sbjct: 84 LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 143
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
IGE GV LSGGQR R+A+ARA+ S I +LD+ SA+D + R I A +
Sbjct: 144 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ--AALDELQKN 201
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
+T ++ H + I AD +VV++ G + G+ ++L +Y+
Sbjct: 202 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHK 249
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 202 bits (515), Expect = 2e-59
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 3/215 (1%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
I F+N+ RYKP P L +IN +I+ G +GIVGR+G+GKS++ + R GQ+L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN-DDLKIWSVLEKCHVKEE 1337
+DG ++ LR + VV Q L S+ DN+ + K+ + +
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 1338 VEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
+ + G T V E G S GQRQ I +ARAL+ + K+L DE T+ +D ++ ++
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 1396 ISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ CKG TVI IAHR+STV N D I++++ G +V
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIV 216
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 153 bits (387), Expect = 3e-42
Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+ + V+L+ ++L + +G ++ ++G GSGKS+L I + +G + G
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 669 ------SIAYVPQVPWILSGTIRDNILFG-KNYDPQSYSETLKACTLDVDISLMVGGDMA 721
+ V Q +L+ +I DNI + K IS + G
Sbjct: 72 PNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT 131
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
+GE+G LSGGQR R+A+ARA+ + I + D+ SA+D + I+ N M +
Sbjct: 132 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN--MHKICKGR 189
Query: 782 TRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL---AVSLYSGFW 825
T I+ H + + AD ++VM+KG++ G +L SLYS +
Sbjct: 190 TVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 201 bits (512), Expect = 6e-59
Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)
Query: 1208 SLSPDWPFQGLIEFQNVTMRYKPSL-PAALHDINFTIEGGTQVGIVGRTGAGKSSILNAL 1266
L+P +GL++FQ+V+ Y L + FT+ G +VG G+GKS++ L
Sbjct: 2 LLTP-LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 1267 FRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMND--DLK 1324
L GGQ+L+DG + R L + A V Q P +F SL++N+ +
Sbjct: 61 QNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE 120
Query: 1325 IWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTA 1382
I + K + + G +T V E+G S GQRQ + LARAL++ VL LD+ T+
Sbjct: 121 ITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 1383 NVDAQTASILQNAI--SSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
+DA + ++ + S E +V+ I +S V D IL L+ G +
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIR 230
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 161 bits (410), Expect = 3e-45
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 15/216 (6%)
Query: 616 EEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------- 668
+VL ++ L G + A++G GSGKS++ + T G + G
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYE 82
Query: 669 ------SIAYVPQVPWILSGTIRDNILFGKNYDP--QSYSETLKACTLDVDISLMVGGDM 720
+A V Q P + ++++NI +G P + + IS + G
Sbjct: 83 HRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 142
Query: 721 AYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQ 780
+ E G LSGGQR +ALARA+ + +LDD SA+DA + P
Sbjct: 143 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202
Query: 781 KTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADL 816
++ +L T ++ + AD ++ ++ G ++ G+ L
Sbjct: 203 RSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQL 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 196 bits (499), Expect = 3e-57
Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 5/217 (2%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ ++V Y S L DI+F + + + G +G GKS+I + L R G+I
Sbjct: 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLD--PFHMNDDLKIWSVLEKCHVK 1335
+DG I N + + R + V Q + G++R+NL D +W VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1336 EEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
VE + L T V E G+ S GQRQ + +ARA L++ K+L LDE TA++D+++ S++Q
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1394 NAISSECKGMTVITIAHRISTVLNMDEILILDHGHLV 1430
A+ S KG T + IAHR+ST+++ D+I ++ G +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 154 bits (390), Expect = 1e-42
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
+L +S S++A G G GKS++ + + T G I G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 669 SIAYVPQVPWILSGTIRDNILFG--KNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I +V Q I++GTIR+N+ +G +Y + + L + M +GE+
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER 136
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
GV +SGGQR RLA+ARA I MLD+ +++D++ + + M +T ++
Sbjct: 137 GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA--LDSLMKGRTTLVI 194
Query: 787 THNVQAISAADMVVVMDKGQVKWIGSSADL--AVSLYSGFWS 826
H + I AD + ++KGQ+ G +L LY+ + S
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 190 bits (485), Expect = 7e-55
Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 24/253 (9%)
Query: 1187 VSLERVLEYMDVPQEELCGYQSLSPD----WPFQGLIEFQNVTMRYKPSLPAALHDINFT 1242
+ +E V + + EL S + + F ++ + P L +IN
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNP----VLKNINLN 58
Query: 1243 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQS 1302
IE G + I G TG+GK+S+L + G I GR + Q
Sbjct: 59 IEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS-------------GRVSFCSQF 105
Query: 1303 PFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQ 1360
++ G++++N+ D+ + SV++ C +++++ T + E G++ S GQR
Sbjct: 106 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRA 165
Query: 1361 LICLARALLKSSKVLCLDECTANVDAQT-ASILQNAISSECKGMTVITIAHRISTVLNMD 1419
I LARA+ K + + LD +D T + ++ + T I + ++ + D
Sbjct: 166 RISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKAD 225
Query: 1420 EILILDHGHLVCI 1432
+ILIL G
Sbjct: 226 KILILHQGSSYFY 238
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 189 bits (481), Expect = 3e-54
Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILS 681
VL ++L + KG ++A+ G GSGK+SLL ILGE+ + G I SG +++ Q WI+
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 110
Query: 682 GTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741
GTI++NI+FG +YD Y +KAC L DI+ D +GE GV LSGGQRAR++LA
Sbjct: 111 GTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170
Query: 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV 801
RAVY +D+Y+LD +D + + + M KTRIL T ++ + AD +++
Sbjct: 171 RAVYKDADLYLLDSPFGYLDVFTEEQVF-ESCVCKLMANKTRILVTSKMEHLRKADKILI 229
Query: 802 MDKGQVKWIGSSADL---AVSLYSGFWSTNEFD 831
+ +G + G+ ++L S + FD
Sbjct: 230 LHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 136 bits (344), Expect = 1e-36
Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 22/224 (9%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+++ Q+V L ++ + G + +VG GAGKS++L + +T G I
Sbjct: 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSI 55
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
G + L A + Q + + H +D + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR------TELLNDV 109
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSS-------KVLCLDECTANVDAQTAS 1390
A+ L+ + S S G+ Q + LA +L+ + ++L LDE ++D S
Sbjct: 110 AGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 1391 ILQNAISS-ECKGMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
L +S+ +G+ ++ +H ++ L +L G ++
Sbjct: 170 ALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLAS 213
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 91.1 bits (226), Expect = 6e-21
Identities = 38/219 (17%), Positives = 80/219 (36%), Gaps = 37/219 (16%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
L +S + G ++ ++G G+GKS+LL + G M GSI +G
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLAL 72
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGE 725
AY+ Q + + ++ + ++ A LD +G
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-----------DKLGR 121
Query: 726 KGVNLSGGQRARLALARAVYH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHM 778
LSGG+ R+ LA V + +LD+ ++++D + +
Sbjct: 122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD-KILSALCQ 180
Query: 779 LQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
++ +H++ + A ++ G++ G ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (338), Expect = 9e-36
Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 11/224 (4%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I+ +NVT YK AL ++N I+ G V I+G +G+GKS++LN + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 1276 QILVDGLNIINTPVRDL----RGRFAVVPQSPFLFEG-SLRDNLD-PFHMNDDLKIWSVL 1329
++ +D + + +L R + V Q L + +N++ P +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 1330 EKCHVKEEVEAVGL-ETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQT 1388
+ E ++ L E F S GQ+Q + +ARAL + ++ D+ T +D++T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 1389 ASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLV 1430
+ + + G TV+ + H I+ + I+ L G +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (284), Expect = 1e-28
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 18/216 (8%)
Query: 614 NNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----- 668
EE L V+L + +G V+++G GSGKS++LN I T G ++
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 669 ------------SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLM 715
I +V Q ++ T +N+ + + + ++ M
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
+ + K LSGGQ+ R+A+ARA+ + I + D A+D++ I+
Sbjct: 132 AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191
Query: 776 PHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811
KT ++ TH++ + ++ + G+V+
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 133 bits (335), Expect = 3e-35
Identities = 54/222 (24%), Positives = 102/222 (45%), Gaps = 11/222 (4%)
Query: 1218 LIEFQNVTMRYKPSLPA--ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGG 1275
+I+ N+T + AL++++ + G G++G +GAGKS+++ + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 1276 QILVDGLNIINTP---VRDLRGRFAVVPQSPFLF-EGSLRDNLDPFHMNDDLKIWSVLEK 1331
+LVDG + + R + ++ Q L ++ N+ D+ V +
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 1332 CHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASI 1391
V E + VGL + S GQ+Q + +ARAL + KVL DE T+ +D T
Sbjct: 121 --VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1392 LQNAISSECK--GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ + + G+T++ I H + V + D + ++ +G L+
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI 220
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (266), Expect = 4e-26
Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668
LN VSL +P G + VIG G+GKS+L+ + T GS+ G
Sbjct: 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79
Query: 669 ---SIAYVPQVPWIL-SGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVG-GDMA-- 721
I + Q +L S T+ N+ D E + T ++ +VG GD
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT---ELLSLVGLGDKHDS 136
Query: 722 YIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQK 781
Y LSGGQ+ R+A+ARA+ + + D+ SA+D R IL L
Sbjct: 137 YPSN----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 782 TRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
T +L TH + D V V+ G++ + +++
Sbjct: 193 TILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 129 bits (325), Expect = 6e-34
Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 10/218 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ +N+T R+ A++ +N TI+ G + ++G +G GK++ L + L G+I
Sbjct: 7 VKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+ T + ++V QS ++ ++ +N+ + ++ V+
Sbjct: 65 FGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR--VRWA 120
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
E + +E + S GQRQ + +ARA++ VL +DE +N+DA+ ++ I
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 1398 SECK--GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ +T I + H + M D I +++ G L+ I
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQI 218
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 116 bits (293), Expect = 1e-29
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669
+N+++L + G + ++G G GK++ L I G T G I+ +
Sbjct: 20 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79
Query: 670 IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGV 728
I+ V Q + T+ +NI F E K V + + +
Sbjct: 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR----VRWAAELLQIEELLNRYPA 135
Query: 729 NLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTH 788
LSGGQR R+A+ARA+ D+ ++D+ LS +DA++ + + L+ T I TH
Sbjct: 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 789 NVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ A++ D + VM++GQ+ IGS ++
Sbjct: 196 DQVEAMTMGDRIAVMNRGQLLQIGSPTEV 224
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 127 bits (321), Expect = 3e-33
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 20/229 (8%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
+ ++ RY L ++ G + I+G +G+GKS+ L + L G I+
Sbjct: 3 LHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 1279 VDGLNIINTPVRD-------------LRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLK 1324
V+G NI +D LR R +V Q L+ ++ +N+ + L
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ-VLG 119
Query: 1325 IWSVLEKCHVKEEVEAVGLETFVKESGIS-FSVGQRQLICLARALLKSSKVLCLDECTAN 1383
+ + + + VG++ + S GQ+Q + +ARAL VL DE T+
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSA 179
Query: 1384 VDAQT-ASILQNAISSECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+D + +L+ +G T++ + H + ++ ++ L G +
Sbjct: 180 LDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 104 bits (260), Expect = 4e-25
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 33/226 (14%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
+ VL VSL G ++++IG GSGKS+ L I + G+I +G
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 669 ---------------SIAYVPQVPWILSG-TIRDNILFG-KNYDPQSYSETLKACTLDVD 711
+ V Q + S T+ +N++ S + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA---LK 131
Query: 712 ISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSN 771
VG D G+ V+LSGGQ+ R+++ARA+ D+ + D+ SA+D ++ +L
Sbjct: 132 YLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL-R 190
Query: 772 AIMGPHMLQKTRILCTHNV-QAISAADMVVVMDKGQVKWIGSSADL 816
+ KT ++ TH + A + V+ + +G+++ G +
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 122 bits (306), Expect = 2e-31
Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++ +N+ + AL ++ ++ G I+G G+GKS+++N + G++
Sbjct: 4 ILRTENIVKYFGEFK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1278 LVDGLNIINTPVRDL-RGRFAVVPQSPFLFEG-SLRDNL-------DPFHMNDDLKIWSV 1328
+ +I N +L Q+P + ++ +NL +N +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 1329 LEKCHVKEEV----EAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANV 1384
++ + E+ E + L S GQ +L+ + RAL+ + K++ +DE A V
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 1385 DAQTASILQNAISSEC-KGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
A + N + KG+T + I HR+ VLN D + ++ +G ++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 107 bits (268), Expect = 3e-26
Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 26/228 (11%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
L+ VS+ + KG + +IG GSGKS+L+N I G + G ++
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 669 ---SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETL---------KACTLDVDISLM 715
I Q P L T+ +N+L G+ +S +L + L
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 716 VGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMG 775
K LSGGQ + + RA+ + ++D+ ++ V +A I N ++
Sbjct: 137 FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLE 195
Query: 776 PHMLQKTRILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADLAVSLYS 822
T ++ H + ++ D + VM GQ+ G + ++ S
Sbjct: 196 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 2e-31
Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 14/222 (6%)
Query: 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276
G + +++ R L I+F IE G G++G GAGK++ L + L G
Sbjct: 1 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1277 ILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ V G N++ P ++R + +P+ N+ + + ++E
Sbjct: 59 VTVFGKNVVEEP-HEVRKLISYLPEEA-----GAYRNMQGIEYLRFVAGFYASSSSEIEE 112
Query: 1337 EVEA----VGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
VE GL +K+ ++S G + + +ARAL+ + ++ LDE T+ +D A +
Sbjct: 113 MVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 172
Query: 1393 QNAISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ + + G+T++ +H + V + D I ++ +G +V
Sbjct: 173 RKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVET 214
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 104 bits (260), Expect = 2e-25
Identities = 41/211 (19%), Positives = 84/211 (39%), Gaps = 19/211 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS---------- 669
+L +S + +G + +IG G+GK++ L I + + G + G
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74
Query: 670 --IAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
I+Y+P+ + + F + S SE + V+ + + G I ++
Sbjct: 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM----VERATEIAGLGEKIKDR 130
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
S G +L +ARA+ + +LD+ S +D AR + + T ++
Sbjct: 131 VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV-RKILKQASQEGLTILVS 189
Query: 787 THNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+HN+ D + ++ G + G+ +L
Sbjct: 190 SHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 121 bits (304), Expect = 3e-31
Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 12/223 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+ +V + A+ +++ ++ G + ++G +G GK++ L + L GQI
Sbjct: 3 GVRLVDVWKVFGEVT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1278 LVDGLNII----NTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKC 1332
+ + V A+V QS L+ ++ DN+ + + ++
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR- 119
Query: 1333 HVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASIL 1392
V+E E +GL + S GQRQ + L RA+++ +V +DE +N+DA+ +
Sbjct: 120 -VREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 1393 QNAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ + G+T I + H + M D I +++ G L +
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 103 bits (257), Expect = 6e-25
Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSI-------A 671
+ + ++SL + G + ++G G GK++ L I G + G I+ +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 672 YVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDV--------DISLMVGGDMAYI 723
+VP ++ + L+ + + LK + +++ ++G + +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLG--LTEL 132
Query: 724 GEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKT 782
+ LSGGQR R+AL RA+ ++++D+ LS +DA++ + + L T
Sbjct: 133 LNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 783 RILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
I TH+ A++ D + VM++G ++ +GS ++
Sbjct: 193 TIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 118 bits (296), Expect = 4e-30
Identities = 50/217 (23%), Positives = 101/217 (46%), Gaps = 8/217 (3%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
++E Q++ + Y A+ I+ + G V ++G GAGK++ L+A+ L G+I
Sbjct: 6 VLEVQSLHVYYGAIH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1278 LVDGLNIINTPVRDLRGR-FAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVK 1335
+ +G +I N P + A+VP+ +F ++ +NL N K +++
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN--RKDKEGIKRDLEW 121
Query: 1336 EEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNA 1395
L+ +K+ G + S G++Q++ + RAL+ K+L +DE + + S +
Sbjct: 122 IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEV 181
Query: 1396 ISSECK-GMTVITIAHRISTVLNM-DEILILDHGHLV 1430
I + G T++ + L + +L+ G +V
Sbjct: 182 IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIV 218
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 102 bits (256), Expect = 7e-25
Identities = 41/213 (19%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI--------------- 664
+ + L +P+G +V +IG G+GK++ L++I G + G I
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 665 HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIG 724
+ G T+ +N++ G I + +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL----EWIFSLFPRLKERLK 134
Query: 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRI 784
+ G LSGG++ LA+ RA+ + M+D+ + + + I + T +
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV-FEVIQKINQEGTTIL 193
Query: 785 LCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
L N A+ A V++ GQ+ G +++L
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 116 bits (293), Expect = 8e-30
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 10/218 (4%)
Query: 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278
++ QNVT + + DIN I G V VG +G GKS++L + L I G +
Sbjct: 1 VQLQNVTKAWGEVV--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 58
Query: 1279 VDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
+ + +TP +V QS L+ S+ +N+ K + ++ V +
Sbjct: 59 IGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR--VNQV 114
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
E + L + + S GQRQ + + R L+ V LDE +N+DA ++ IS
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 1398 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ G T+I + H + + D+I++LD G + +
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV 212
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 102 bits (256), Expect = 7e-25
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 17/211 (8%)
Query: 619 QNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668
+ VV ++L + +G V +G G GKS+LL I G +T G +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 71
Query: 669 -SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEK 726
+ V Q + ++ +N+ FG + ++ +
Sbjct: 72 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 130
Query: 727 GVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILC 786
LSGGQR R+A+ R + +++LD+ LS +DA + + L +T I
Sbjct: 131 ---LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 187
Query: 787 THNV-QAISAADMVVVMDKGQVKWIGSSADL 816
TH+ +A++ AD +VV+D G+V +G +L
Sbjct: 188 THDQVEAMTLADKIVVLDAGRVAQVGKPLEL 218
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 115 bits (289), Expect = 1e-29
Identities = 46/210 (21%), Positives = 90/210 (42%), Gaps = 21/210 (10%)
Query: 1219 IEFQNVTMRY-KPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+E +++++ Y KP L I TIE G V G G GK+++L + G+I
Sbjct: 3 LEIRDLSVGYDKP----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCHVKE 1336
+ +G P+ ++G+ +P+ + S+ D L +K+ K + +
Sbjct: 59 IYNG-----VPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV----NKNEIMD 109
Query: 1337 EVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396
+E+V + K+ S G + + LA LL ++++ LD+ +D + + +I
Sbjct: 110 ALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 168
Query: 1397 SSECK--GMTVITIAHRISTVLNMDEILIL 1424
K G+ +I+ +S D L
Sbjct: 169 LEILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 87.7 bits (217), Expect = 5e-20
Identities = 39/194 (20%), Positives = 78/194 (40%), Gaps = 19/194 (9%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIA 671
VL ++++ + KG++V G G GK++LL +I + G I +G I
Sbjct: 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIF 73
Query: 672 YVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNL 730
++P+ + ++ D + + ++ L+ V + + +K L
Sbjct: 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE-----SVE--VLDLKKKLGEL 126
Query: 731 SGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790
S G R+ LA + ++IY+LDD + A+D +L + + I
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE- 185
Query: 791 QAISAADMVVVMDK 804
+S D+ + K
Sbjct: 186 --LSYCDVNENLHK 197
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 113 bits (284), Expect = 1e-28
Identities = 52/218 (23%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
+IE ++++ ++K +L +++ +E G I+G TGAGK+ L + G+I
Sbjct: 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1278 LVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEE 1337
L+DG T + + A V Q+ LF ++ +++ + + V +
Sbjct: 58 LLDG--KDVTDLSPEKHDIAFVYQNYSLFPHMNVKK----NLEFGMRMKKIKDPKRVLDT 111
Query: 1338 VEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAIS 1397
+ +E + + ++ S G++Q + LARAL+ + K+L LDE + +D +T + +S
Sbjct: 112 ARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171
Query: 1398 S--ECKGMTVITIAHRISTVLNM-DEILILDHGHLVCI 1432
+ +TV+ I H + M D I ++ G L+ +
Sbjct: 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 97.8 bits (243), Expect = 3e-23
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
N L+ +SL + G ++G G+GK+ L I G + G I G
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 669 SIAYVPQVPWILSG-TIRDNILF----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
IA+V Q + ++ N+ F K DP+ +T + + +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLL 121
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
+ LSGG++ R+ALARA+ I +LD+ LSA+D + + + T
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181
Query: 784 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
+ TH+ A AD + V+ G++ +G ++
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 109 bits (273), Expect = 4e-27
Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 9/220 (4%)
Query: 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277
I +NV+ +K AL ++N IE G + GI+G +GAGK++ + + L G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 1278 LVDGLNIINTPVRDLRGRF---AVVPQSPFLFEG-SLRDNLDPFHMNDDLKIWSVLEKCH 1333
D + + + +V Q+ L+ + +N+ N + + ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-- 120
Query: 1334 VKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQ 1393
V+E + + + + S Q+Q + LARAL+K +L LDE +N+DA+ +
Sbjct: 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 1394 NAISS--ECKGMTVITIAHRISTVLNM-DEILILDHGHLV 1430
+ G+T++ ++H + + + D + +L G LV
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 95.5 bits (237), Expect = 2e-22
Identities = 49/214 (22%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Query: 621 VVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668
V L+ V++ + G ++G G+GK++ + I G + + G ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 669 ----SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYI 723
I V Q + T +NI F S E K V+ + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR----VEEVAKILDIHHVL 134
Query: 724 GEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTR 783
LSG Q+ R+ALARA+ + +LD+ S +DA++ + L T
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 784 ILCTHNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
++ +H+ + AD V V+ KG++ +G DL
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 97.4 bits (242), Expect = 5e-23
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 13/198 (6%)
Query: 1238 DINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297
+++F + ++G TGAGKS L + + G++ ++G +I TP+ R
Sbjct: 17 NVDFEMGRDY-CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI--TPLPPERRGIG 73
Query: 1298 VVPQSPFLFE--GSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFS 1355
VPQ LF R+ + ++ V+E E +G+ + S
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERD-----RRVREMAEKLGIAHLLDRKPARLS 128
Query: 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISS--ECKGMTVITIAHRIS 1413
G+RQ + LARAL+ ++L LDE + VD +T +L + + ++ + H +
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1414 TVLNM-DEILILDHGHLV 1430
+ DE+ ++ +G +V
Sbjct: 189 EAAMLADEVAVMLNGRIV 206
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.1 bits (223), Expect = 2e-20
Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 21/210 (10%)
Query: 620 NVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668
N LN V + + ++G G+GKS L I G + G + +G
Sbjct: 13 NFRLN-VDFEMGRD-YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERR 70
Query: 669 SIAYVPQVPWILSG-TIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKG 727
I +VPQ + ++ NI +G + + V G + K
Sbjct: 71 GIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR------VREMAEKLGIAHLLDRKP 124
Query: 728 VNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCT 787
LSGG+R R+ALARA+ + +LD+ LSAVD + ++ + T
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 788 HNVQ-AISAADMVVVMDKGQVKWIGSSADL 816
H++ A AD V VM G++ G +L
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 75.4 bits (184), Expect = 5e-16
Identities = 17/182 (9%), Positives = 36/182 (19%), Gaps = 26/182 (14%)
Query: 1249 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1308
+ I G G GK++++ + + + T R +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1309 SLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARAL 1368
+++ + A
Sbjct: 63 FFTSKKLVGSYGVNVQYF--------------------------EELAIPILERAYREAK 96
Query: 1369 LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGH 1428
KV+ +DE + V+ + EI L
Sbjct: 97 KDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156
Query: 1429 LV 1430
L+
Sbjct: 157 LI 158
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 66.6 bits (161), Expect = 6e-13
Identities = 15/178 (8%), Positives = 40/178 (22%), Gaps = 17/178 (9%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYD 695
+ + GE G GK++L+ I+ + +RD +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE---------------VRDPETKKRTGF 47
Query: 696 PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDD 755
+E K + + + A A + ++D+
Sbjct: 48 RIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107
Query: 756 VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSS 813
+ ++ H + + + + +
Sbjct: 108 I--GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 3e-06
Identities = 16/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)
Query: 1249 VGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEG 1308
V + G G GK+++++ + G + + R + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 1309 SLRDNLDPFHMNDDLKIWSVLEK--------CHVKEEVEAVGLETFVKESGISFSVGQRQ 1360
+ + L + G V + + +
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 1361 LICLARALLKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHR 1411
I R L + + L + ++++ + + + +T +R
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 3/300 (1%)
Query: 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLIK--FLQQGSGHLDGYVLAIALGLTSILKSF 330
+ I G+ ++N + LL L+ F + L L + + +
Sbjct: 14 FKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITS 73
Query: 331 FDTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLAN 390
+ + Y K+ + + + V ++ + + + +
Sbjct: 74 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA 133
Query: 391 SFHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKD 450
IG+ + + Y + + + + I+ I + + +
Sbjct: 134 LITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ 193
Query: 451 ERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATTPTL 510
+ H L G E + + ++ +
Sbjct: 194 VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLA 253
Query: 511 FSL-FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFL 569
+ F + L A + + +L+ PL S V + + L L
Sbjct: 254 LAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 313
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 44.9 bits (104), Expect = 4e-05
Identities = 33/307 (10%), Positives = 84/307 (27%), Gaps = 10/307 (3%)
Query: 273 YGYPYICLGLLKVVNDSIGFAGPLLLNKLI-KFLQQGSGHLDGYVLAIALGLTSILKSFF 331
Y Y ++ ++ I PLL+ I + + D V + + + L F
Sbjct: 12 YKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFV 71
Query: 332 DTQYSFHLSKLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS 391
+ + L +S + + + V + ++ +
Sbjct: 72 IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQT 131
Query: 392 FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWIANLIANATEKMMKQKDE 451
+ I + + + F + +T+ + + + + ++ K E
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 452 RIRRTGEILTHIR---------TLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVF 502
R + E+ + + + T TR ++
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 503 FWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISI 562
T + G + + + + + L PL L +F S+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 563 RRLTRFL 569
R+ + +
Sbjct: 312 DRVFQLI 318
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 38.8 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1249 VGIVGRTGAGKSSILNALFR------------LTPICGGQILVDGLNIINTPVRDLRGRF 1296
VG+VG GKS++L+ + L P G DG + + DL G
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVM---ADLPGLI 60
Query: 1297 AVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCH 1333
Q L LR + + + + +
Sbjct: 61 EGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDP 97
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} Length = 306 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Score = 39.4 bits (91), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664
L LP+ + V+G SGKSS+L +I+G L GS
Sbjct: 22 LDLPQ---IVVVGSQSSGKSSVLENIVGRDFLPRGSG 55
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.8 bits (92), Expect = 0.002
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 636 VAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667
VAV GE GSGKSS +N++ G G+
Sbjct: 59 VAVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.5 bits (91), Expect = 0.002
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHAS 667
L LP+ +AV+G +GKSS+L + +G L GS +
Sbjct: 24 LDLPQ---IAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 1249 VGIVGRTGAGKSSILNAL 1266
VG+VG AGKSS+L A+
Sbjct: 4 VGLVGYPNAGKSSLLAAM 21
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1446 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.9 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.63 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.61 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.42 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.3 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.16 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.05 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.9 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.67 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.6 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.19 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.82 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.66 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.52 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.49 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.17 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.92 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.84 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.82 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.62 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 95.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.46 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.39 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.36 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.05 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.94 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.92 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.9 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.85 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.82 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 94.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.7 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.54 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 94.52 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 94.38 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.23 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.07 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.96 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.91 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.89 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.87 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.81 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.79 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.71 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 93.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 93.55 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.55 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.51 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.49 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.49 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.39 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 93.38 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.34 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.29 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 93.27 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.24 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.24 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.17 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.15 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.12 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.05 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.94 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.89 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.86 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.73 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.62 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 92.6 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 92.53 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.52 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.46 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.44 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.34 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.28 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.26 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.18 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.09 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.09 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.04 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 91.96 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.93 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.91 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.89 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.82 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.8 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.75 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.74 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 91.68 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 91.53 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 91.48 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.48 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.41 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.33 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 91.21 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.06 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.06 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.05 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.05 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.05 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 91.05 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 90.98 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 90.98 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 90.93 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 90.91 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 90.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.82 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.72 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.63 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 90.55 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 90.54 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.53 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.4 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.35 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 90.31 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.25 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.24 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.23 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.17 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 90.11 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.99 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.99 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.78 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.65 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.53 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 89.51 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.49 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 89.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.46 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 89.46 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.44 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.4 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 89.36 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.25 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 89.24 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.22 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.21 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 89.18 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 89.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.07 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 88.97 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.91 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 88.88 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 88.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 88.77 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.75 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 88.75 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.69 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.68 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.68 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.47 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 88.46 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.44 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.44 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.37 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.31 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.26 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.25 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 88.22 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 88.21 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.05 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 88.02 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 87.97 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.84 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 87.62 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.58 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.55 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.46 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 87.43 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.26 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 87.17 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.15 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 87.14 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.13 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 87.12 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.12 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 86.93 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 86.91 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.88 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 86.85 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 86.73 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.73 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 86.66 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 86.64 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.59 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 86.54 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 86.47 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.46 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.27 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.22 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 86.17 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 86.08 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 86.06 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.9 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 85.88 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 85.86 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 85.81 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 85.78 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.73 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.51 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 85.47 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.41 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.31 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 85.25 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 85.15 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.13 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 84.96 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.93 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.92 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 84.9 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 84.77 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 84.74 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 84.72 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 84.63 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 84.55 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.42 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 84.37 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.28 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 84.25 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.19 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 84.18 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.13 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 84.12 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.09 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 83.95 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.95 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 83.94 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.93 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 83.92 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.91 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.86 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 83.84 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 83.71 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.59 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 83.52 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.44 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 83.36 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.35 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 83.16 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 83.09 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 83.07 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 83.05 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.97 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.92 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 82.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 82.81 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 82.79 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.71 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 82.64 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 82.64 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 82.63 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 82.6 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 82.58 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 82.57 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 82.56 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 82.54 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.51 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 82.46 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.41 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 82.37 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 82.32 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 82.28 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 82.21 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 82.18 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 82.13 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.01 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 81.94 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.92 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 81.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.69 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 81.61 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.55 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 81.51 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 81.48 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.47 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 81.44 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 81.41 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 81.32 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 81.25 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 81.22 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 81.19 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.15 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 81.05 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 81.01 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.01 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 81.0 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 81.0 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.0 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 80.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 80.97 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.94 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.9 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 80.74 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 80.73 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.65 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 80.6 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 80.57 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 80.57 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.56 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.55 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 80.54 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 80.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 80.48 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 80.44 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 80.42 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.33 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 80.33 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.3 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 80.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 80.05 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=458.02 Aligned_cols=222 Identities=35% Similarity=0.532 Sum_probs=214.1
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18999999984499884220013997489299999799987889999972578799746999696179999476714608
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1297 (1446)
+|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.|||.|++.++.+++|++++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred CEEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEE
T ss_conf 92999999990899960374248998499999999999998999999997357888889999999944002465535288
Q ss_pred EEECCCCCCCCCHHHHCCCCCC-CCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9917777778757872397999-9917799999980199999958--994054149999994599999999986249988
Q 000521 1298 VVPQSPFLFEGSLRDNLDPFHM-NDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1298 ~IpQdp~lf~gTIR~NLdp~~~-~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~I 1374 (1446)
+|||+|++|++|||+|+.++.+ .++++++.+++.+++.+++..+ |+++.++++|.+||||||||+|||||++++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98244655784000352235755438889999999755788876320134432787886698898987544344416513
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 99856677989997999999999836995799860690267511979999497899970440012
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|||||||+||..|++.|.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|..++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell 225 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 55647765559899999999999985899899997889999849999999899999988999998
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=457.40 Aligned_cols=226 Identities=31% Similarity=0.514 Sum_probs=216.7
Q ss_pred CCCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHH
Q ss_conf 98851899999998449988422001399748929999979998788999997257879974699969617999947671
Q 000521 1214 PFQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1214 p~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR 1293 (1446)
..+|.|+|+||+|+|+++.+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|
T Consensus 12 ~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 12 IKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHH
T ss_conf 77887999988999599997606443899839989999889998099999999712786300015399875307888863
Q ss_pred CCEEEEECCCCCCCCCHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 4608991777777875787239799-99917799999980199999958--99405414999999459999999998624
Q 000521 1294 GRFAVVPQSPFLFEGSLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1294 ~~i~~IpQdp~lf~gTIR~NLdp~~-~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1446)
+++++|||+|++|+||||+||..+. ..+|++++++++.+++.+++..+ |+|+.++++|.+||||||||+|||||+++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred HEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 41456510156899879999851586799999999999969799997362420103338889849999999999999855
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 998899856677989997999999999836995799860690267511979999497899970440012
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|+|++||||||+||.+|+..+.+.|++..+++|+|+||||++.+..||+|++|++|+|+|.|+|..++
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl 240 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELI 240 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 998999837654479779999999999875388899996899999859999999899999988999998
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=447.12 Aligned_cols=225 Identities=34% Similarity=0.507 Sum_probs=215.4
Q ss_pred CCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC
Q ss_conf 88518999999984499884220013997489299999799987889999972578799746999696179999476714
Q 000521 1215 FQGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG 1294 (1446)
Q Consensus 1215 ~~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~ 1294 (1446)
..|.|+|+||+|+|+....++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+++++.+.+|+
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCEEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 83079999889992999976353328998599999999999985999999986216888468987880121110665420
Q ss_pred CEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 60899177777787578723979--999917799999980199999958--99405414999999459999999998624
Q 000521 1295 RFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1295 ~i~~IpQdp~lf~gTIR~NLdp~--~~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1446)
+++++||+|.+|++|+++|+..+ ...++++++++++.+++.++++.+ |||+.++++|.+||||||||+|||||+++
T Consensus 90 ~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 90 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 68799502544786202433205722089999999999981799997355441014348889849999999999999954
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 998899856677989997999999999836995799860690267511979999497899970440012
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|+|||||||||+||.+|+..|.+.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|..++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl 238 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 238 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 998899516444589889999999998752278899998879999859999999899999988999998
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=438.98 Aligned_cols=227 Identities=30% Similarity=0.411 Sum_probs=212.1
Q ss_pred CCCCCCEEEEEEEEEECCC-CCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
Q ss_conf 9988518999999984499-884220013997489299999799987889999972578799746999696179999476
Q 000521 1213 WPFQGLIEFQNVTMRYKPS-LPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD 1291 (1446)
Q Consensus 1213 wp~~g~I~f~nvs~~Y~~~-~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~ 1291 (1446)
++.+|.|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+.
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 66533699999899889999997674438998499899999999984999999986143787689988998531101378
Q ss_pred HHCCEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 71460899177777787578723979--999917799999980199999958--99405414999999459999999998
Q 000521 1292 LRGRFAVVPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARA 1367 (1446)
Q Consensus 1292 LR~~i~~IpQdp~lf~gTIR~NLdp~--~~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARA 1367 (1446)
+|+++++|||+|.+|++|+|+|+..+ ...++++++++.+++++.++++.+ |+++.+++.|.+||||||||+|||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 6249988998566779899979999999998369--95799860690267511979999497899970440012
Q 000521 1368 LLKSSKVLCLDECTANVDAQTASILQNAISSECK--GMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1368 lL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~--~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
++++|+|++||||||+||..|+..+.+.|++..+ ++|+|+||||++.+..||+|+||++|+|+|.|+|..++
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl 239 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLM 239 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 45687078716757656853689999999997650698999995979999859999999899999988999998
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=444.02 Aligned_cols=220 Identities=32% Similarity=0.517 Sum_probs=209.2
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89999999844998842200139974892999997999878899999725787997469996961799994767146089
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1298 (1446)
|+++||+|+|++ .+++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+++++.+.+|+++++
T Consensus 2 le~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 2 LSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp EEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 799988998799-9841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred EECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCE
Q ss_conf 9177777787578723979--999917799999980199999958--994054149999994599999999986249988
Q 000521 1299 VPQSPFLFEGSLRDNLDPF--HMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKV 1374 (1446)
Q Consensus 1299 IpQdp~lf~gTIR~NLdp~--~~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~I 1374 (1446)
|||+|.+|++|+|+|+..+ ...++++++++++.+++.+++..+ ++++.++++|.+||||||||+|+|||++++|+|
T Consensus 81 v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 75665457853454301244555423567789999975554203742101523687898799999999999998529989
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHHH
Q ss_conf 99856677989997999999999836995799860690267511979999497899970440012
Q 000521 1375 LCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1375 LiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
++||||||+||.+++..+++.|++..+++|+|+||||++.+..||+|+||++|+|+|.|+|..++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl 225 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99658865569889999988788871799899997879999849999999899999999999998
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=404.38 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=200.9
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC------------
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------ 668 (1446)
.|+++|++|+|+.+. .++ |+|+||++++|+.++|+|++|||||||+++|+|.+++.+|+|.++|
T Consensus 1 eI~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 76 (241)
T d2pmka1 1 DITFRNIRFRYKPDS-PVI---LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR 76 (241)
T ss_dssp EEEEEEEEEESSTTS-CEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CEEEEEEEEEECCCC-CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHH
T ss_conf 929999999908999-603---7424899849999999999999899999999735788888999999994400246553
Q ss_pred -EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf -0999838888888448899714999-99456999999815507785115997322027987552489999999998713
Q 000521 669 -SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 669 -~iay~~Q~pwl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~ 746 (1446)
.++||+|+||++++||+|||.++.+ .+.+++..+++.|.+.+++..+|+|..|.+|++|.+|||||||||+||||++.
T Consensus 77 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~ 156 (241)
T d2pmka1 77 RQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156 (241)
T ss_dssp HHEEEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 52889824465578400035223575543888999999975578887632013443278788669889898754434441
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf 99999980786560599999999996419566896599982571045417989999498799952966887300
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSL 820 (1446)
Q Consensus 747 ~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~ 820 (1446)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|+|||+++.+..||+|++|++|+|+++|+++++.++.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~ 228 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRN-MHK-ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 228 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHH-HHH-HHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHST
T ss_pred CCCHHHHHCCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 6513556477655598999999999-999-85899899997889999849999999899999988999998299
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=407.80 Aligned_cols=222 Identities=28% Similarity=0.401 Sum_probs=204.5
Q ss_pred CCCEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC---------
Q ss_conf 88459998007870478853335541000258409969999958999478999998647567770899809---------
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1446)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g--------- 668 (1446)
....|+++|++|+|+.+. .++ |+|+||+|++|+.++|+|++|||||||++.|+|.+++.+|+|.++|
T Consensus 13 ~~g~I~~~nvsf~Y~~~~-~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNE-API---LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CSCCEEEEEEEECSCSSS-CCS---EEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCEEEEEEEEEEECCCC-CCC---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf 788799998899959999-760---6443899839989999889998099999999712786300015399875307888
Q ss_pred ----EEEEECCCCCCCCCCHHHHHHCCCC-CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----0999838888888448899714999-99456999999815507785115997322027987552489999999998
Q 000521 669 ----SIAYVPQVPWILSGTIRDNILFGKN-YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1446)
Q Consensus 669 ----~iay~~Q~pwl~n~TIreNIlfg~~-~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARA 743 (1446)
.++||+|+|+++++||||||.||.+ .++++..++++.|++.++++.+|+|.+|.+|++|.+|||||||||+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 86341456510156899879999851586799999999999969799997362420103338889849999999999999
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCCC
Q ss_conf 71399999980786560599999999996419566896599982571045417989999498799952966887300368
Q 000521 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSG 823 (1446)
Q Consensus 744 vY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~ 823 (1446)
+|++|+|++||||+|+||+++++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|++.|+++|+.++.+.+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~-l~~-l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y 246 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEA-LDV-LSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAY 246 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHH-HHH-HTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHH
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHH
T ss_conf 8559989998376544797799999999-998-75388899996899999859999999899999988999998688499
Q ss_pred CC
Q ss_conf 65
Q 000521 824 FW 825 (1446)
Q Consensus 824 ~~ 825 (1446)
.+
T Consensus 247 ~~ 248 (255)
T d2hyda1 247 EH 248 (255)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=401.92 Aligned_cols=223 Identities=28% Similarity=0.391 Sum_probs=205.5
Q ss_pred CCCEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC---------
Q ss_conf 88459998007870478853335541000258409969999958999478999998647567770899809---------
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1446)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g--------- 668 (1446)
....|+++|++|+|+... .++ |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 10 ~~g~I~~~nvsf~Y~~~~-~~~---L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGRE-VPA---LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CCCCEEEEEEEECSSSSS-CCS---EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred CCEEEEEEEEEEEECCCC-CCE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHH
T ss_conf 830799998899929999-763---5332899859999999999998599999998621688846898788012111066
Q ss_pred ----EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----099983888888844889971499--99945699999981550778511599732202798755248999999999
Q 000521 669 ----SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 669 ----~iay~~Q~pwl~n~TIreNIlfg~--~~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLAR 742 (1446)
.++||+|+|+++++|+++|+.++. .++.+++.++++.|.+.++++.+|+|.+|.+|++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred HHHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 54206879950254478620243320572208999999999998179999735544101434888984999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCC
Q ss_conf 87139999998078656059999999999641956689659998257104541798999949879995296688730036
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYS 822 (1446)
Q Consensus 743 AvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~ 822 (1446)
|++.+|+|++||||+|+||+.+++.|++. +.. +.+++|+|+|||+++.+..||+|++|++|+|+++|+++|++++.+.
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~ 243 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAA-LDE-LQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 243 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHH-HHH-HHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCH
T ss_conf 99549988995164445898899999999-987-5227889999887999985999999989999998899999868939
Q ss_pred CCCC
Q ss_conf 8654
Q 000521 823 GFWS 826 (1446)
Q Consensus 823 ~~~~ 826 (1446)
+.++
T Consensus 244 y~~l 247 (253)
T d3b60a1 244 YAQL 247 (253)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=393.69 Aligned_cols=221 Identities=24% Similarity=0.318 Sum_probs=200.1
Q ss_pred CCEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC----------
Q ss_conf 8459998007870478853335541000258409969999958999478999998647567770899809----------
Q 000521 599 DMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG---------- 668 (1446)
Q Consensus 599 ~~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g---------- 668 (1446)
+..|+++|++|+|+...+.++ |+|+||+|++|+.++|+||+|||||||+++|+|.+++.+|+|.++|
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLV---LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCS---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred CCEEEEEEEEEECCCCCCCEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHH
T ss_conf 336999998998899999976---74438998499899999999984999999986143787689988998531101378
Q ss_pred ---EEEEECCCCCCCCCCHHHHHHCCCCC--CHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ---09998388888884488997149999--9456999999815507785115997322027987552489999999998
Q 000521 669 ---SIAYVPQVPWILSGTIRDNILFGKNY--DPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARA 743 (1446)
Q Consensus 669 ---~iay~~Q~pwl~n~TIreNIlfg~~~--d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARA 743 (1446)
.++|++|+|+++++||+|||.+|... +.++.....+.+++.+.++.+|+|.+|.+|++|.+|||||||||+||||
T Consensus 86 ~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARa 165 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARA 165 (251)
T ss_dssp HHHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEEC
T ss_conf 88776540456500276346554542101302788999999998999998561211136751676689547048998604
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 713999999807865605999999999964195668--965999825710454179899994987999529668873003
Q 000521 744 VYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 821 (1446)
Q Consensus 744 vY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~ 821 (1446)
++++|+|++||||+|+||+++++.|++. +.. +.+ ++|+|++||+++.+..||+|++|++|+|+++|+++|+.++.+
T Consensus 166 l~~~p~ililDEpTs~LD~~~~~~i~~~-l~~-l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~ 243 (251)
T d1jj7a_ 166 LIRKPCVLILDDATSALDANSQLQVEQL-LYE-SPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 243 (251)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHH-HHT-CGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTS
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf 4568707871675765685368999999-999-76506989999959799998599999998999999889999985975
Q ss_pred CCC
Q ss_conf 686
Q 000521 822 SGF 824 (1446)
Q Consensus 822 ~~~ 824 (1446)
.+.
T Consensus 244 ~y~ 246 (251)
T d1jj7a_ 244 CYW 246 (251)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 889
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=391.83 Aligned_cols=213 Identities=36% Similarity=0.634 Sum_probs=196.6
Q ss_pred CEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCC
Q ss_conf 45999800787047885333554100025840996999995899947899999864756777089980909998388888
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 679 (1446)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl 679 (1446)
..+.++|.+|. ..|+ |+|+||+|++|++++|+||+|||||||+++|+|.+++.+|+|.++|+++|++|.||+
T Consensus 37 ~~i~~~~~~~~-----g~pv---L~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l 108 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPV---LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 108 (281)
T ss_dssp ---CHHHHHHT-----TCEE---EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCC
T ss_pred CCEEEEECCCC-----CCEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEECCCCC
T ss_conf 96799976989-----9767---737599985999999998999829999999957974788289999999998164302
Q ss_pred CCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCC
Q ss_conf 88448899714999994569999998155077851159973220279875524899999999987139999998078656
Q 000521 680 LSGTIRDNILFGKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSA 759 (1446)
Q Consensus 680 ~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSa 759 (1446)
+++||+|||.||..+++.+++.++++|.+..|+..+|+|+.|.+|++|.+|||||||||+||||++++|+|++||||+|+
T Consensus 109 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 109 MPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp CSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 67603214203334560579999999776999984612332355554237799999999999999869635133385544
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCC
Q ss_conf 05999999999964195668965999825710454179899994987999529668873003
Q 000521 760 VDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLY 821 (1446)
Q Consensus 760 LD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~ 821 (1446)
||+.+.+.|++.++.. +.+++|+|++||+++.+..||+|++|++|++++.|+++|++....
T Consensus 189 LD~~~~~~i~~~~~~~-~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~ 249 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCK-LMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRP 249 (281)
T ss_dssp SCHHHHHHHHHHCCCC-CTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred CCHHHHHHHHHHHHHH-HHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCC
T ss_conf 8989999999999988-628999999925289998599999998999999878999960594
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=394.23 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=199.6
Q ss_pred EEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-------------
Q ss_conf 9998007870478853335541000258409969999958999478999998647567770899809-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------- 668 (1446)
++++|++|+|+.+ +++ |+|+||++++|+.++|+||+|||||||++.|+|.++|.+|+|.++|
T Consensus 2 le~knvsf~Y~~~--~~v---L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 76 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQI---LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76 (242)
T ss_dssp EEEEEEEECSSSS--SCS---EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTT
T ss_pred EEEEEEEEECCCC--CCE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHH
T ss_conf 7999889987999--841---42258998599999999999997999999999960989877988998844246788874
Q ss_pred EEEEECCCCCCCCCCHHHHHHCCC--CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 099983888888844889971499--999456999999815507785115997322027987552489999999998713
Q 000521 669 SIAYVPQVPWILSGTIRDNILFGK--NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 669 ~iay~~Q~pwl~n~TIreNIlfg~--~~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~ 746 (1446)
.|+||+|+|+++++||+|||.++. ..+++...++++.+.+..++..+|+|.+|.+|++|.+|||||||||+||||++.
T Consensus 77 ~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~ 156 (242)
T d1mv5a_ 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (242)
T ss_dssp TCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred HEEEECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 36797566545785345430124455542356778999997555420374210152368789879999999999999852
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEEEECCEEEEECCHHHHHHCCCCCCC
Q ss_conf 9999998078656059999999999641956689659998257104541798999949879995296688730036865
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDKGQVKWIGSSADLAVSLYSGFW 825 (1446)
Q Consensus 747 ~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~~~~l~~~~~~~~~ 825 (1446)
+|+|++||||+|+||+.+++.|++. +.. +.+++|+|++||+++.+..||+|++|++|+|+++|+++|+.++.+.+.+
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~-l~~-l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~ 233 (242)
T d1mv5a_ 157 NPKILMLDEATASLDSESESMVQKA-LDS-LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAK 233 (242)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHH-HHH-HHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHH
T ss_conf 9989996588655698899999887-888-7179989999787999984999999989999999999999868969999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=376.65 Aligned_cols=206 Identities=25% Similarity=0.387 Sum_probs=188.6
Q ss_pred CCCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC
Q ss_conf 85189999999844998842200139974892999997999878899999725787997469996961799994767146
Q 000521 1216 QGLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR 1295 (1446)
Q Consensus 1216 ~g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~ 1295 (1446)
.+.|.|+|+++. ..|||+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+|| +
T Consensus 36 ~~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 36 ENNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ----CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CCCEEEEECCCC----CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf 896799976989----97677375999859999999989998299999999579747882899999-------------9
Q ss_pred EEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 0899177777787578723979999917799999980199999958--99405414999999459999999998624998
Q 000521 1296 FAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1296 i~~IpQdp~lf~gTIR~NLdp~~~~sd~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ 1373 (1446)
++++||+|++|++|+|+|+.++...++.+++++++.+++...+..+ ++++.+++.|.+||||||||++||||++++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99981643026760321420333456057999999977699998461233235555423779999999999999986963
Q ss_pred EEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECCCHH
Q ss_conf 8998566779899979999999-9983699579986069026751197999949789997044001
Q 000521 1374 VLCLDECTANVDAQTASILQNA-ISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCISFICRY 1438 (1446)
Q Consensus 1374 ILiLDEaTS~lD~~T~~~i~~~-i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~~~~ 1438 (1446)
||+||||||+||..++..+.+. +....+++|+|+|+||++.+..||+|++|++|++++.|+|..+
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL 244 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 244 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHH
T ss_pred CHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 513338554489899999999999886289999999252899985999999989999998789999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.3e-41 Score=341.28 Aligned_cols=213 Identities=23% Similarity=0.322 Sum_probs=185.9
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18999999984499884220013997489299999799987889999972578799746999696179999476714608
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1297 (1446)
.|+++|++.+|++ ..+|+||||+|++||.+||+|+||||||||++++.|+++|++|+|.+||.|+++.+.. |++++
T Consensus 6 ~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 81 (239)
T d1v43a3 6 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 81 (239)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEEE
T ss_conf 4999879999999--9998130678879989999999998299999999758999878799916413547700--01589
Q ss_pred EEECCCCCCCC-CHHHHCCCCCC---CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99177777787-57872397999---991779999998019999995899405414999999459999999998624998
Q 000521 1298 VVPQSPFLFEG-SLRDNLDPFHM---NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1298 ~IpQdp~lf~g-TIR~NLdp~~~---~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ 1373 (1446)
+|||+|.+|+. |+++|+..+.. .+.+++.+. ..+..+.+||+...+.....||||||||++|||||..+|+
T Consensus 82 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~ 156 (239)
T d1v43a3 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPD 156 (239)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCS
T ss_pred EEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 98003353422209999999998739999999999-----9999987598556609954699999889999766404998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 899856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
||+||||||+||+.+...+++.|++.. .++|+|+|||+++.+.. ||||++|++|+++|.|+|...|
T Consensus 157 iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 157 VLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 243068866689899989999999998731980799948999999869999999899999985999998
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.5e-41 Score=340.61 Aligned_cols=211 Identities=26% Similarity=0.345 Sum_probs=177.8
Q ss_pred EEEEEEEEEECCCCC--CCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHH----
Q ss_conf 899999998449988--42200139974892999997999878899999725787997469996961799994767----
Q 000521 1219 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDL---- 1292 (1446)
Q Consensus 1219 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~L---- 1292 (1446)
|+++||+++|+.+.. .+|+|+||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf 89990799948998208987133778849979999889999821655750688777766269999985768855512312
Q ss_pred HCCEEEEECCCCCCCC-CHHHHCCC---C---CCCCHHHHH-HHHHHCCHHHHHHHCCCCHHH-HCCCCCCCHHHHHHHH
Q ss_conf 1460899177777787-57872397---9---999917799-999980199999958994054-1499999945999999
Q 000521 1293 RGRFAVVPQSPFLFEG-SLRDNLDP---F---HMNDDLKIW-SVLEKCHVKEEVEAVGLETFV-KESGISFSVGQRQLIC 1363 (1446)
Q Consensus 1293 R~~i~~IpQdp~lf~g-TIR~NLdp---~---~~~sd~~i~-~aL~~~~l~~~i~~lgLdt~i-~e~G~~LS~GQrQll~ 1363 (1446)
|++|++|+|+|.+|+. |+++|+.. . ...+.++.. +++ +.++..||.... ......||||||||++
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~L~~~~~~~~p~~LSGGqkQRva 155 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------ECLKMAELEERFANHKPNQLSGGQQQRVA 155 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHH------HHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH------HHHHHHCHHHHHHCCCHHHCCHHHHHHHH
T ss_conf 555778804124176866888775788872247899999999999------98876242345534880238999999999
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHCCEEEEEECCEEEEEECC
Q ss_conf 9998624998899856677989997999999999836--99579986069026751197999949789997044
Q 000521 1364 LARALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLNMDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1364 LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~~~ 1435 (1446)
|||||..+|+||++|||||+||+.+...+++.|++.. .++|+|+|||+++...-||||++|++|+|+|.|.+
T Consensus 156 IAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 156 IARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf 87565227888994687654698999999999999998439999998788899986998999989999995257
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.3e-42 Score=342.34 Aligned_cols=207 Identities=26% Similarity=0.398 Sum_probs=182.2
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89999999844998842200139974892999997999878899999725787997469996961799994767146089
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1298 (1446)
|+++|++.+|+. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+++.+.. |+++++
T Consensus 2 i~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~ 76 (229)
T d3d31a2 2 IEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAF 76 (229)
T ss_dssp EEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEE
T ss_pred EEEEEEEEEECC---EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCEE
T ss_conf 899989999499---788433789879989999989998299999999647688878899956734652165--740561
Q ss_pred EECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9177777787-578723979----99991779999998019999995899405414999999459999999998624998
Q 000521 1299 VPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSK 1373 (1446)
Q Consensus 1299 IpQdp~lf~g-TIR~NLdp~----~~~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ 1373 (1446)
|||++.+|+. |++||+..+ +...++++.++++.+ |++.........||||||||++|||||+.+|+
T Consensus 77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~---------~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 147 (229)
T d3d31a2 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL---------KIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (229)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT---------TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH---------CCHHHHHCCHHHCCHHHHCCHHHHHHHHCCCC
T ss_conf 512111174665778888877640553899999999982---------56555758955479998401403043443677
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 899856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1374 VLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1374 ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
||+||||||+||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|++++.|+|...|
T Consensus 148 iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 144347876799899999999999998647968999749999999969999999799999986999998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.7e-41 Score=338.66 Aligned_cols=212 Identities=24% Similarity=0.384 Sum_probs=183.2
Q ss_pred EEEEEEEEEECCCCC--CCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH---HH
Q ss_conf 899999998449988--4220013997489299999799987889999972578799746999696179999476---71
Q 000521 1219 IEFQNVTMRYKPSLP--AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD---LR 1293 (1446)
Q Consensus 1219 I~f~nvs~~Y~~~~~--~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~---LR 1293 (1446)
|+++|++.+|+.+.. .+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|+...+.++ +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf 79982799969998148986150578869979999899989888999987588636677328867685208755511554
Q ss_pred CCEEEEECCCCCCCC-CHHHHCCCC---CCCCH----HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 460899177777787-578723979---99991----7799999980199999958994054149999994599999999
Q 000521 1294 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDD----LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1294 ~~i~~IpQdp~lf~g-TIR~NLdp~---~~~sd----~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LA 1365 (1446)
+++++|||+|-+|+. |+++|+... ...+. +++.++|+++ ||+.........||||||||++||
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v---------gL~~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV---------GLGDKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH---------STTTTTSSCBSCCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCCHHHHCCHHHCCHHHHHHHHHH
T ss_conf 16643022522279964999999999984999899999999999976---------990355489434999999899986
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 98624998899856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
|||..+|++|++||||++||+.+...|++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|-..|
T Consensus 153 raL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVF 229 (240)
T ss_dssp HHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTT
T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 40105898687446556589888567999999998646978999838999999869999999799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=5.2e-42 Score=344.32 Aligned_cols=217 Identities=24% Similarity=0.325 Sum_probs=184.1
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC---HHHHHC
Q ss_conf 18999999984499884220013997489299999799987889999972578799746999696179999---476714
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP---VRDLRG 1294 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~---~~~LR~ 1294 (1446)
.|+++|++.+|+.+...+|+||||+|++||.+||+|+||||||||+++|.|+.+|++|+|.+||.|++..+ ....|+
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred CEEEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 60899177777787-5787239799---9991779999998019999995899405414999999459999999998624
Q 000521 1295 RFAVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1295 ~i~~IpQdp~lf~g-TIR~NLdp~~---~~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1446)
++++|||+|.+|+. |++||+...- ..+.++..+. ..+..+.+||+.........||||||||++|||||..
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~ 157 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-----VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVK 157 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHH-----HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHCCHHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 51477304334666657777665567613799999999-----9999866591766648954599999858998757760
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 998899856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|+||++|||||++|+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+|+|.|+|...|
T Consensus 158 ~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (242)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 466145447866799899889989999998635987999979999999969999999899999986999998
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-41 Score=341.06 Aligned_cols=208 Identities=26% Similarity=0.370 Sum_probs=180.4
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89999999844998842200139974892999997999878899999725787997469996961799994767146089
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1298 (1446)
|+++||+++|++ ..+|+|+||+|++||.+||+|+||||||||++++.|+.+|++|+|.+||.|+++.+.. |++|++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~ 76 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 76 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEE
T ss_pred CEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEEE
T ss_conf 999999999899--9998111778869989999989998299999999658788888899999977888644--432223
Q ss_pred EECCCCCCCC-CHHHHCCCCCCC---C----HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9177777787-578723979999---9----1779999998019999995899405414999999459999999998624
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFHMN---D----DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK 1370 (1446)
Q Consensus 1299 IpQdp~lf~g-TIR~NLdp~~~~---s----d~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~ 1370 (1446)
|||+|.+|+. |+++|+..+... + ++++.++++.+++.+ ........||||||||++|||||+.
T Consensus 77 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~---------~~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 77 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH---------LLDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp ECSSCCC---------------------CHHHHHHHHHHHHC------------------------------CHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH---------HHHCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 4334202643337889789998759988999999999997578865---------6648965699999999999999703
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 998899856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|++|+|||||++||+.+...+++.|++.. .++|+|+|+|+++.+.. ||||++|++|++++.|.|...|
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~ 219 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY 219 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 998899758887889889989999999998742987999948999999969999999799999980899997
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.7e-41 Score=338.62 Aligned_cols=211 Identities=21% Similarity=0.295 Sum_probs=181.5
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH----HH
Q ss_conf 18999999984499884220013997489299999799987889999972578799746999696179999476----71
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRD----LR 1293 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~----LR 1293 (1446)
.|+++||+.+|++ ..+|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+... .|
T Consensus 3 ~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 1899869999899--99985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CCEEEEECCCCCCCC-CHHHHCCCC---CCCCHHH----HHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 460899177777787-578723979---9999177----99999980199999958994054149999994599999999
Q 000521 1294 GRFAVVPQSPFLFEG-SLRDNLDPF---HMNDDLK----IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLA 1365 (1446)
Q Consensus 1294 ~~i~~IpQdp~lf~g-TIR~NLdp~---~~~sd~~----i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LA 1365 (1446)
+++++|||+|.+|+. |+++|+... ...+.++ +.++++.+ |+..........||||||||++||
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~---------~l~~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL---------GLTELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---------TCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---------CCHHHHCCCHHHCCHHHHHHHHHH
T ss_conf 55120022122231011667633068772999899999999999875---------996676299334999999999999
Q ss_pred HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 98624998899856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1366 RALLKSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1366 RAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
|||..+|+||+|||||++||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||||++|++|+++|.|+|...|
T Consensus 152 raL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99826998898258876569899989999999998636988999959999999969999999899999985999998
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.4e-40 Score=331.13 Aligned_cols=215 Identities=22% Similarity=0.311 Sum_probs=179.0
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--------
Q ss_conf 189999999844998842200139974892999997999878899999725787997469996961799994--------
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPV-------- 1289 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~-------- 1289 (1446)
.|+++|++++|+. ..+|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+.
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCC
T ss_conf 6999978999899--99881506688699799999899982999999997476678997799999933677520000235
Q ss_pred -----HHHHCCEEEEECCCCCCCC-CHHHHCCCC----CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHH-CCCCCCCHHH
Q ss_conf -----7671460899177777787-578723979----9999177999999801999999589940541-4999999459
Q 000521 1290 -----RDLRGRFAVVPQSPFLFEG-SLRDNLDPF----HMNDDLKIWSVLEKCHVKEEVEAVGLETFVK-ESGISFSVGQ 1358 (1446)
Q Consensus 1290 -----~~LR~~i~~IpQdp~lf~g-TIR~NLdp~----~~~sd~~i~~aL~~~~l~~~i~~lgLdt~i~-e~G~~LS~GQ 1358 (1446)
...|+++++|+|+|-+|+. |+++|+..+ ...+..+..+. ..+..+.+|+..... .....|||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~p~~LSGG~ 154 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARER-----ALKYLAKVGIDERAQGKYPVHLSGGQ 154 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHTTCCHHHHTSCGGGSCHHH
T ss_pred CHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCCHHHHCCCCCCCCHHH
T ss_conf 1767999745448998332314110102136565787629998999999-----99999982995244306822056778
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCC
Q ss_conf 999999998624998899856677989997999999999836-99579986069026751-1979999497899970440
Q 000521 1359 RQLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFIC 1436 (1446)
Q Consensus 1359 rQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f-~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~ 1436 (1446)
+||++|||||..+|++|++||||++||..+...|.+.|++.. +++|+|+|+|+++.+.. ||||+||++|+|+|.|.|.
T Consensus 155 ~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ 234 (258)
T d1b0ua_ 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPE 234 (258)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 88989999984399878852455568878888998765541036883389948999999869999999799999984999
Q ss_pred HHH
Q ss_conf 012
Q 000521 1437 RYF 1439 (1446)
Q Consensus 1437 ~~~ 1439 (1446)
..|
T Consensus 235 ev~ 237 (258)
T d1b0ua_ 235 QVF 237 (258)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-39 Score=325.61 Aligned_cols=215 Identities=23% Similarity=0.367 Sum_probs=187.9
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCE
Q ss_conf 51899999998449988422001399748929999979998788999997257879974699969617999947671460
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i 1296 (1446)
|+|+++|++.+|+. ..+|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.++|.|+.+. .+.+|+++
T Consensus 1 gaI~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTE
T ss_pred CCEEEEEEEEEECC--EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHHE
T ss_conf 97899958999999--9998062568848979999999999999999999669887888799986724468-39887218
Q ss_pred EEEECCCCCCCC-CHHHHCCCCC---CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 899177777787-5787239799---999177999999801999999589940541499999945999999999862499
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFH---MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSS 1372 (1446)
Q Consensus 1297 ~~IpQdp~lf~g-TIR~NLdp~~---~~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~ 1372 (1446)
+++||++.+|+. |++||+.... ..++.++++.+++. .+.++++....+.-..||+|||||+++|||++.+|
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p 152 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNP 152 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 6750015468786677888989986179989999999999-----98679788885045337998989999999986599
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 8899856677989997999999999836-99579986069026751-1979999497899970440012
Q 000521 1373 KVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1373 ~ILiLDEaTS~lD~~T~~~i~~~i~~~f-~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|++|||||++||+.+...+++.|++.. ++.|||+++|+++.+.. ||||++|++|++++.|+|...+
T Consensus 153 ~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 221 (238)
T d1vpla_ 153 RLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 221 (238)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 988733798897989999999999999965998999959899999969999999899999992899998
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-39 Score=325.97 Aligned_cols=214 Identities=21% Similarity=0.320 Sum_probs=181.0
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC-E
Q ss_conf 189999999844998842200139974892999997999878899999725787997469996961799994767146-0
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGR-F 1296 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~-i 1296 (1446)
-++++|++.+|+. ..+|+||||++++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+..+.+++ |
T Consensus 4 iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 4 ILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEECC--EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 6999778999799--68871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEEECCCCCCCC-CHHHHCCCCCC----------------CCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHH
Q ss_conf 899177777787-57872397999----------------9917799999980199999958994054149999994599
Q 000521 1297 AVVPQSPFLFEG-SLRDNLDPFHM----------------NDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQR 1359 (1446)
Q Consensus 1297 ~~IpQdp~lf~g-TIR~NLdp~~~----------------~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQr 1359 (1446)
+++||+|.+|+. |++||+..+.. ..+++..+ ...+.++.+|++...+....+||||||
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~LSgG~~ 156 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE-----KAFKILEFLKLSHLYDRKAGELSGGQM 156 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHH-----HHHHHHHHTTCGGGTTSBGGGSCHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHH-----HHHHHHHHCCCCHHCCCCHHHCCCHHH
T ss_conf 725776424788742321430133303450456654213532899999-----999998761963020595356991888
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCH
Q ss_conf 9999999862499889985667798999799999999983-699579986069026751-19799994978999704400
Q 000521 1360 QLICLARALLKSSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICR 1437 (1446)
Q Consensus 1360 Qll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~-f~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~ 1437 (1446)
||+++|||+..+|++|+|||||++||+.+...+.+.|++. -+++|+|+|+|+++.+.. ||||+||++|++++.|+|.-
T Consensus 157 Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e 236 (254)
T d1g6ha_ 157 KLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236 (254)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHH
T ss_conf 89999999975927232439765699999999999999999789989999476999998699999996998999966899
Q ss_pred H
Q ss_conf 1
Q 000521 1438 Y 1438 (1446)
Q Consensus 1438 ~ 1438 (1446)
.
T Consensus 237 ~ 237 (254)
T d1g6ha_ 237 E 237 (254)
T ss_dssp H
T ss_pred H
T ss_conf 8
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.3e-39 Score=322.21 Aligned_cols=216 Identities=24% Similarity=0.352 Sum_probs=181.4
Q ss_pred CCEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHC-C
Q ss_conf 518999999984499884220013997489299999799987889999972578799746999696179999476714-6
Q 000521 1217 GLIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRG-R 1295 (1446)
Q Consensus 1217 g~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~-~ 1295 (1446)
--++++|++++|++ ..+|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.+.+.+..++ .
T Consensus 5 ~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 5 IVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEEEEEEEEECC--EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 07999618999899--8888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEEECCCCCCCC-CHHHHCCCCC--CCCHHHHHHHHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 0899177777787-5787239799--99917799999980199999958-994054149999994599999999986249
Q 000521 1296 FAVVPQSPFLFEG-SLRDNLDPFH--MNDDLKIWSVLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1296 i~~IpQdp~lf~g-TIR~NLdp~~--~~sd~~i~~aL~~~~l~~~i~~l-gLdt~i~e~G~~LS~GQrQll~LARAlL~~ 1371 (1446)
++++||++.+|+. |+++|+..+. ....++..+.++.+ ...+ +++.........||||||||+++|||++.+
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~ 157 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHCHHHHHHCCHHHCCHHHHHHHHHHHHHHHC
T ss_conf 3556765545776369999998887327888999999999-----98741768887585433899999999999999829
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 98899856677989997999999999836-99579986069026751-1979999497899970440012
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1372 ~~ILiLDEaTS~lD~~T~~~i~~~i~~~f-~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
|++|+|||||++||+.+...+.+.|++.. +++|+|+++|+++.+.. ||||++|++|++++.|+|...+
T Consensus 158 P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 9874003988679999999999999999968998999958899999969999999899999984899984
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.8e-37 Score=308.44 Aligned_cols=208 Identities=24% Similarity=0.344 Sum_probs=173.8
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEE
Q ss_conf 89999999844998842200139974892999997999878899999725787997469996961799994767146089
Q 000521 1219 IEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAV 1298 (1446)
Q Consensus 1219 I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~ 1298 (1446)
+++ ++..+|.+- .+ |+||++. +|.+||+||||||||||+++|.|+++|++|+|.+||.|+++++.. |++|++
T Consensus 3 l~v-~~~k~~g~~---~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~ 74 (240)
T d2onka1 3 LKV-RAEKRLGNF---RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGF 74 (240)
T ss_dssp EEE-EEEEEETTE---EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBC
T ss_pred EEE-EEEEEECCE---EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCEE
T ss_conf 999-999998999---99-9999749-979999979998099999999739998962899999998869989--928522
Q ss_pred EECCCCCCCC-CHHHHCCCCC-CCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9177777787-5787239799-9991779999998019999995899405414999999459999999998624998899
Q 000521 1299 VPQSPFLFEG-SLRDNLDPFH-MNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLC 1376 (1446)
Q Consensus 1299 IpQdp~lf~g-TIR~NLdp~~-~~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILi 1376 (1446)
+||+|.+|+. |++||+...- ..+..+..+. ..+.++.+|++...+.....||||||||+++|||++.+|+||+
T Consensus 75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ill 149 (240)
T d2onka1 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred ECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 52314435220155766653233677889999-----9999986383756657944489999899999877751677067
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf 856677989997999999999836--99579986069026751-1979999497899970440012
Q 000521 1377 LDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1377 LDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
||||||+||+.+...+++.|++.. .+.|+|+|+|+++.+.. ||+|++|++|++++.|+|...+
T Consensus 150 lDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHH
T ss_conf 528655588799999999999998743976999818999999969999999899999990699983
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.2e-37 Score=302.86 Aligned_cols=199 Identities=28% Similarity=0.395 Sum_probs=170.6
Q ss_pred EEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-----------EE
Q ss_conf 9998007870478853335541000258409969999958999478999998647567770899809-----------09
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1446)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g-----------~i 670 (1446)
|+++|.+++|+. ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++| .|
T Consensus 1 Iev~nv~k~yg~---~~~---l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~i 74 (232)
T d2awna2 1 VQLQNVTKAWGE---VVV---SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 74 (232)
T ss_dssp EEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCE
T ss_pred CEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEE
T ss_conf 999999999899---999---81117788699899999899982999999996587888888999999778886444322
Q ss_pred EEECCCCCCCCC-CHHHHHHCCCCC---C----HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 998388888884-488997149999---9----45699999981550778511599732202798755248999999999
Q 000521 671 AYVPQVPWILSG-TIRDNILFGKNY---D----PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALAR 742 (1446)
Q Consensus 671 ay~~Q~pwl~n~-TIreNIlfg~~~---d----~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLAR 742 (1446)
+||+|+|-++.. |++|||.|+... + +++.+++++...|.+-.+.. ...||||||||++|||
T Consensus 75 g~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-----------~~~LSGGqkQRvaiAr 143 (232)
T d2awna2 75 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGR 143 (232)
T ss_dssp EEECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHH
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCC-----------HHHCCHHHHHHHHHHH
T ss_conf 23433420264333788978999875998899999999999757886566489-----------6569999999999999
Q ss_pred HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 871399999980786560599999999996419566--89659998257104541-798999949879995296688730
Q 000521 743 AVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 743 AvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~~~~l~~~ 819 (1446)
|+..+|++++||||+|+||+.+.+.|++. +.. +. .++|+|++||+++.... ||+|++|++|++++.|+++++...
T Consensus 144 aL~~~P~illlDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 144 TLVAEPSVFLLDEPLSNLDAALRVQMRIE-ISR-LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp HHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf 97039988997588878898899899999-999-9874298799994899999996999999979999998089999738
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.7e-36 Score=299.22 Aligned_cols=200 Identities=26% Similarity=0.356 Sum_probs=170.6
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-----------E
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809-----------0
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------S 669 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g-----------~ 669 (1446)
.|+++|.+++|+. ..+ |+|+||++++|++++|+||+|||||||++.|.|.+++++|+|.++| .
T Consensus 6 ~I~v~nlsk~yg~---~~a---l~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ 79 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTA---VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN 79 (239)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGT
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCE
T ss_conf 4999879999999---999---8130678879989999999998299999999758999878799916413547700015
Q ss_pred EEEECCCCCCCC-CCHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999838888888-448899714999---994----569999998155077851159973220279875524899999999
Q 000521 670 IAYVPQVPWILS-GTIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALA 741 (1446)
Q Consensus 670 iay~~Q~pwl~n-~TIreNIlfg~~---~d~----~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLA 741 (1446)
|+||+|+|-++. .|++||+.|+.. +++ ++.+++++.+.|++-.. .....|||||||||+||
T Consensus 80 ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 80 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp EEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHH
T ss_pred EEEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHH
T ss_conf 8998003353422209999999998739999999999999998759855660-----------99546999998899997
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 98713999999807865605999999999964195668--965999825710454-179899994987999529668873
Q 000521 742 RAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 742 RAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~ 818 (1446)
||+..+|++++||||+|+||+.+.+.+++. +.. +.+ ++|+|++||+++... .||+|++|++|+|+++|+++++..
T Consensus 149 raL~~~P~iLllDEPts~LD~~~~~~i~~l-l~~-l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 149 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAE-IKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 664049982430688666898999899999-999-987319807999489999998699999998999999859999986
Q ss_pred C
Q ss_conf 0
Q 000521 819 S 819 (1446)
Q Consensus 819 ~ 819 (1446)
+
T Consensus 227 ~ 227 (239)
T d1v43a3 227 R 227 (239)
T ss_dssp C
T ss_pred C
T ss_conf 8
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.8e-36 Score=300.47 Aligned_cols=202 Identities=23% Similarity=0.318 Sum_probs=172.9
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC------------
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------ 668 (1446)
.++++|.+.+|+.+. ... |+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~g~-~~a---L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~ 78 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGK-VVA---LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78 (242)
T ss_dssp CEEEEEEEEEEGGGT-EEE---EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSC
T ss_pred EEEEEEEEEEECCCC-EEE---EECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCC
T ss_conf 899975799988999-899---8040789879989999989998099999999758688874599999995137311153
Q ss_pred ----EEEEECCCCCCCCC-CHHHHHHCCCC---CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf ----09998388888884-48899714999---994----5699999981550778511599732202798755248999
Q 000521 669 ----SIAYVPQVPWILSG-TIRDNILFGKN---YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRA 736 (1446)
Q Consensus 669 ----~iay~~Q~pwl~n~-TIreNIlfg~~---~d~----~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKq 736 (1446)
+|+|++|+|-++.. |++|||.|+.. .++ ++.+++++.+.|++..+..| ..|||||||
T Consensus 79 ~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQ 147 (242)
T d1oxxk2 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQ 147 (242)
T ss_dssp GGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHH
T ss_pred HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHH
T ss_conf 120451477304334666657777665567613799999999999986659176664895-----------459999985
Q ss_pred HHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHH-HHCCEEEEEECCEEEEECCH
Q ss_conf 9999998713999999807865605999999999964195668--96599982571045-41798999949879995296
Q 000521 737 RLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAI-SAADMVVVMDKGQVKWIGSS 813 (1446)
Q Consensus 737 RIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l-~~aD~Ii~l~~G~i~~~G~~ 813 (1446)
||+||||+..+|+++++|||+|+||+.+...+++- +.. +.+ +.|+|++||+++.. ..||+|++|++|+|++.|++
T Consensus 148 RvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~-i~~-l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARAL-VKE-VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHH-HHH-HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCH
T ss_conf 89987577604661454478667998998899899-999-9863598799997999999996999999989999998699
Q ss_pred HHHHHC
Q ss_conf 688730
Q 000521 814 ADLAVS 819 (1446)
Q Consensus 814 ~~l~~~ 819 (1446)
+++...
T Consensus 226 ~el~~~ 231 (242)
T d1oxxk2 226 EDLYDN 231 (242)
T ss_dssp HHHHHS
T ss_pred HHHHHC
T ss_conf 999868
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=2.5e-36 Score=299.49 Aligned_cols=200 Identities=27% Similarity=0.341 Sum_probs=171.4
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC------------
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------ 668 (1446)
.++++|.+.+|+. .++ |+|+||++++|++++++||+|||||||+++|.|...+++|+|.++|
T Consensus 3 ~i~v~nl~k~yg~---~~a---l~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~ 76 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTA---VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFV 76 (240)
T ss_dssp EEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEEC
T ss_pred CEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHC
T ss_conf 1899869999899---999---8560668869989999999998099999999648788989899999980356644424
Q ss_pred -----EEEEECCCCCCCCC-CHHHHHHCCC---CCCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHH
Q ss_conf -----09998388888884-4889971499---9994----569999998155077851159973220279875524899
Q 000521 669 -----SIAYVPQVPWILSG-TIRDNILFGK---NYDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQR 735 (1446)
Q Consensus 669 -----~iay~~Q~pwl~n~-TIreNIlfg~---~~d~----~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQK 735 (1446)
+|+||+|+|-++.. ||+|||.++. .+++ ++.+++++.+.|.+-... ....||||||
T Consensus 77 ~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqk 145 (240)
T d1g2912 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQR 145 (240)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHH
T ss_pred CCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCC-----------CHHHCCHHHH
T ss_conf 53225512002212223101166763306877299989999999999987599667629-----------9334999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHH-CCEEEEEECCEEEEECC
Q ss_conf 99999998713999999807865605999999999964195668--9659998257104541-79899994987999529
Q 000521 736 ARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 736 qRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~ 812 (1446)
|||++|||+..+|++++||||+++||+.+...|++. +.. +.+ +.|+|++||+++.... ||+|++|++|+|++.|+
T Consensus 146 QRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 146 QRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE-LKK-LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH-HHH-HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECC
T ss_conf 999999998269988982588765698999899999-999-986369889999599999999699999998999999859
Q ss_pred HHHHHHC
Q ss_conf 6688730
Q 000521 813 SADLAVS 819 (1446)
Q Consensus 813 ~~~l~~~ 819 (1446)
++|+..+
T Consensus 224 ~~el~~~ 230 (240)
T d1g2912 224 PDEVYDK 230 (240)
T ss_dssp HHHHHHS
T ss_pred HHHHHHC
T ss_conf 9999828
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.6e-36 Score=299.28 Aligned_cols=198 Identities=25% Similarity=0.385 Sum_probs=171.1
Q ss_pred EEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-----------EE
Q ss_conf 9998007870478853335541000258409969999958999478999998647567770899809-----------09
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SI 670 (1446)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g-----------~i 670 (1446)
++++|.+++|+. .. |+|+||++++|++++|+||+|||||||++.|.|-+++++|+|.++| ++
T Consensus 2 i~v~nlsk~y~~----~a---L~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~i 74 (229)
T d3d31a2 2 IEIESLSRKWKN----FS---LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (229)
T ss_dssp EEEEEEEEECSS----CE---EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred EEEEEEEEEECC----EE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCC
T ss_conf 899989999499----78---84337898799899999899982999999996476888788999567346521657405
Q ss_pred EEECCCCCCCCC-CHHHHHHCCC----CCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 998388888884-4889971499----99945699999981550778511599732202798755248999999999871
Q 000521 671 AYVPQVPWILSG-TIRDNILFGK----NYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVY 745 (1446)
Q Consensus 671 ay~~Q~pwl~n~-TIreNIlfg~----~~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY 745 (1446)
+|++|+|-++.. |++||+.|+. .-++++..++++...+.+..+ .....|||||||||+||||+.
T Consensus 75 g~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTT
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHH-----------CCHHHCCHHHHCCHHHHHHHH
T ss_conf 615121111746657788888776405538999999999825655575-----------895547999840140304344
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC--CCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 399999980786560599999999996419566--89659998257104541-798999949879995296688730
Q 000521 746 HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHM--LQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 746 ~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll--~~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~~~~l~~~ 819 (1446)
.+|+++|||||+|+||+.+.+.+++. +.. +. .+.|+|++||+++.... ||+|++|++|++++.|+++++..+
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~-l~~-l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREM-LSV-LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHH-HHH-HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf 36771443478767998999999999-999-9864796899974999999996999999979999998699999868
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.5e-36 Score=298.26 Aligned_cols=198 Identities=24% Similarity=0.333 Sum_probs=161.5
Q ss_pred EEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-------------
Q ss_conf 9998007870478853335541000258409969999958999478999998647567770899809-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------- 668 (1446)
++++|.+++|+... ....+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 I~i~nlsk~y~~~~--~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE--EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79 (230)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred EEEEEEEEEECCCC--EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCH
T ss_conf 89990799948998--2089871337788499799998899998216557506887777662699999857688555123
Q ss_pred ----EEEEECCCCCCCCC-CHHHHHHCCC------CCC-HHHHHHHH---HHHCCHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf ----09998388888884-4889971499------999-45699999---981550778511599732202798755248
Q 000521 669 ----SIAYVPQVPWILSG-TIRDNILFGK------NYD-PQSYSETL---KACTLDVDISLMVGGDMAYIGEKGVNLSGG 733 (1446)
Q Consensus 669 ----~iay~~Q~pwl~n~-TIreNIlfg~------~~d-~~~Y~~vi---~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGG 733 (1446)
.|+|++|+|-++.. ||+||+.++. .++ +++-+++. +...|.+.+. ...-..||||
T Consensus 80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~----------~~~p~~LSGG 149 (230)
T d1l2ta_ 80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGG 149 (230)
T ss_dssp HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHH
T ss_pred HHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHH----------CCCHHHCCHH
T ss_conf 125557788041241768668887757888722478999999999999887624234553----------4880238999
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHHCCEEEEEECCEEEEEC
Q ss_conf 9999999998713999999807865605999999999964195668--96599982571045417989999498799952
Q 000521 734 QRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISAADMVVVMDKGQVKWIG 811 (1446)
Q Consensus 734 QKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G 811 (1446)
|||||+||||+..+|++++||||+|+||+.+++.|++- +.. +.+ ++|+|++||+++....||+|++|++|+|+++|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~-l~~-l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL-LKK-LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH-HHH-HHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEEC
T ss_conf 99999987565227888994687654698999999999-999-9984399999987888999869989999899999952
Q ss_pred CH
Q ss_conf 96
Q 000521 812 SS 813 (1446)
Q Consensus 812 ~~ 813 (1446)
+.
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred CC
T ss_conf 57
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.7e-36 Score=298.09 Aligned_cols=203 Identities=28% Similarity=0.346 Sum_probs=170.6
Q ss_pred EEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-------------
Q ss_conf 9998007870478853335541000258409969999958999478999998647567770899809-------------
Q 000521 602 VIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------- 668 (1446)
Q Consensus 602 i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------- 668 (1446)
++++|.+.+|+.+.. ...+|+|+||++++|++++|+||+|||||||++.|.|..++++|+|.++|
T Consensus 2 i~v~nlsk~y~~~~~--~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~ 79 (240)
T d3dhwc1 2 IKLSNITKVFHQGTR--TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 79 (240)
T ss_dssp EEEEEEEEEEECSSC--EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred EEEEEEEEEECCCCE--EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHH
T ss_conf 799827999699981--489861505788699799998999898889999875886366773288676852087555115
Q ss_pred ---EEEEECCCCCCCCC-CHHHHHHCC-----CCCC--HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf ---09998388888884-488997149-----9999--456999999815507785115997322027987552489999
Q 000521 669 ---SIAYVPQVPWILSG-TIRDNILFG-----KNYD--PQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR 737 (1446)
Q Consensus 669 ---~iay~~Q~pwl~n~-TIreNIlfg-----~~~d--~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqR 737 (1446)
+++|++|+|-+++. |++|||.++ .+-+ +++..+.++.+.|.+-.+. ....||||||||
T Consensus 80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~-----------~~~~LSGG~~QR 148 (240)
T d3dhwc1 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQR 148 (240)
T ss_dssp HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSS-----------CBSCCCHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHC-----------CHHHCCHHHHHH
T ss_conf 541664302252227996499999999998499989999999999997699035548-----------943499999989
Q ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC--CCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHH
Q ss_conf 999998713999999807865605999999999964195668--9659998257104541-7989999498799952966
Q 000521 738 LALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSA 814 (1446)
Q Consensus 738 IaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~--~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~~~ 814 (1446)
|+||||+..+|+++++|||+++||+.+++.|++. +.. +.+ +.|+|++||+++.... ||+|++|++|+|++.|+++
T Consensus 149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~-l~~-l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ 226 (240)
T d3dhwc1 149 VAIARALASNPKVLLCDEATSALDPATTRSILEL-LKD-INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHH-HHH-HHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETT
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHH
T ss_conf 9986401058986874465565898885679999-999-98646978999838999999869999999799999987999
Q ss_pred HHHHC
Q ss_conf 88730
Q 000521 815 DLAVS 819 (1446)
Q Consensus 815 ~l~~~ 819 (1446)
++..+
T Consensus 227 ei~~~ 231 (240)
T d3dhwc1 227 EVFSH 231 (240)
T ss_dssp TTTCS
T ss_pred HHHHC
T ss_conf 99728
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.5e-35 Score=288.84 Aligned_cols=201 Identities=24% Similarity=0.305 Sum_probs=171.0
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC------------
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------ 668 (1446)
.++++|.+++|+. .++ |+|+||++++|++++|+||+|||||||+++|.|-.++++|+|.++|
T Consensus 2 ~Lev~nl~k~yg~---~~a---l~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~ 75 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEV---LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 75 (258)
T ss_dssp CEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSS
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHH
T ss_conf 6999978999899---998---8150668869979999989998299999999747667899779999993367752000
Q ss_pred --------------EEEEECCCCCCCCC-CHHHHHHCC----CCCCH----HHHHHHHHHHCCHHHHH-HCCCCCCCCCC
Q ss_conf --------------09998388888884-488997149----99994----56999999815507785-11599732202
Q 000521 669 --------------SIAYVPQVPWILSG-TIRDNILFG----KNYDP----QSYSETLKACTLDVDIS-LMVGGDMAYIG 724 (1446)
Q Consensus 669 --------------~iay~~Q~pwl~n~-TIreNIlfg----~~~d~----~~Y~~vi~aC~L~~Dl~-~lp~GD~T~IG 724 (1446)
+++|++|+|-+++. |+.|||.++ ..+++ ++..++++.+.|.+... ..|
T Consensus 76 ~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-------- 147 (258)
T d1b0ua_ 76 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-------- 147 (258)
T ss_dssp EEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG--------
T ss_pred CCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC--------
T ss_conf 023517679997454489983323141101021365657876299989999999999998299524430682--------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH-CCEEEEEE
Q ss_conf 79875524899999999987139999998078656059999999999641956689659998257104541-79899994
Q 000521 725 EKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMD 803 (1446)
Q Consensus 725 e~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~-aD~Ii~l~ 803 (1446)
..|||||||||+||||+..+|++++||||+++||+.+.+.|++- +..-.-+++|+|++||+++.+.. ||+|++|+
T Consensus 148 ---~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~l-l~~l~~~g~til~vtHdl~~~~~~adri~vm~ 223 (258)
T d1b0ua_ 148 ---VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI-MQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 223 (258)
T ss_dssp ---GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHH-HHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHCCCCCCEEEEECCHHHHHHHCCEEEEEE
T ss_conf ---20567788898999998439987885245556887888899876-55410368833899489999998699999997
Q ss_pred CCEEEEECCHHHHHHC
Q ss_conf 9879995296688730
Q 000521 804 KGQVKWIGSSADLAVS 819 (1446)
Q Consensus 804 ~G~i~~~G~~~~l~~~ 819 (1446)
+|+|++.|+++|+..+
T Consensus 224 ~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 224 QGKIEEEGDPEQVFGN 239 (258)
T ss_dssp TTEEEEEECHHHHHHS
T ss_pred CCEEEEECCHHHHHHC
T ss_conf 9999998499999838
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-34 Score=285.54 Aligned_cols=207 Identities=24% Similarity=0.358 Sum_probs=167.2
Q ss_pred CCCEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC---------
Q ss_conf 88459998007870478853335541000258409969999958999478999998647567770899809---------
Q 000521 598 KDMAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------- 668 (1446)
Q Consensus 598 ~~~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g--------- 668 (1446)
.+..++++|.+++|+. ..+ |+|+||++++|++++++||+|||||||+++|.|.+++.+|+|.++|
T Consensus 3 sd~~Lev~~l~k~yg~---~~a---l~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~ 76 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGA---IHA---IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76 (240)
T ss_dssp CSEEEEEEEEEEEETT---EEE---EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CCEEEEEEEEEEEECC---EEE---EEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
T ss_conf 5607999618999899---888---8302578889979999999998599999999678888803898424434466088
Q ss_pred -----EEEEECCCCCCCCC-CHHHHHHCCCC--CCHHHHHHHH-HHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -----09998388888884-48899714999--9945699999-981550778511599732202798755248999999
Q 000521 669 -----SIAYVPQVPWILSG-TIRDNILFGKN--YDPQSYSETL-KACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 -----~iay~~Q~pwl~n~-TIreNIlfg~~--~d~~~Y~~vi-~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIa 739 (1446)
.++|++|++-+++. |++||+.++.. .+.+..++.+ ++..+...++.. ......+||||||||++
T Consensus 77 ~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-------LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-------TTSBSSSSCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHH-------HHCCHHHCCHHHHHHHH
T ss_conf 88874235567655457763699999988873278889999999999874176888-------75854338999999999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-HCCEEEEEECCEEEEECCHHHHHH
Q ss_conf 9998713999999807865605999999999964195668965999825710454-179899994987999529668873
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 LARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~-~aD~Ii~l~~G~i~~~G~~~~l~~ 818 (1446)
+|||+..+|++++||||+++||+...+.|++- +..---+++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEV-IQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 99999829987400398867999999999999-99999689989999588999999699999998999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-34 Score=284.45 Aligned_cols=200 Identities=24% Similarity=0.299 Sum_probs=163.6
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC------------
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------ 668 (1446)
.++++|.+.+|+. .++ |+|+||++++|++++++||+|||||||+++|.|.+++.+|+|.++|
T Consensus 4 iL~v~nlsk~yg~---~~a---L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 77 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKA---LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 77 (254)
T ss_dssp EEEEEEEEEEETT---EEE---EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH
T ss_pred EEEEEEEEEEECC---EEE---ECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHH
T ss_conf 6999778999799---688---7121799889979999999998499999999779768873799999966405699999
Q ss_pred --EEEEECCCCCCCC-CCHHHHHHCCCCC-----------------CHHH---HHHHHHHHCCHHHHHHCCCCCCCCCCC
Q ss_conf --0999838888888-4488997149999-----------------9456---999999815507785115997322027
Q 000521 669 --SIAYVPQVPWILS-GTIRDNILFGKNY-----------------DPQS---YSETLKACTLDVDISLMVGGDMAYIGE 725 (1446)
Q Consensus 669 --~iay~~Q~pwl~n-~TIreNIlfg~~~-----------------d~~~---Y~~vi~aC~L~~Dl~~lp~GD~T~IGe 725 (1446)
.|+|++|+|-++. -|++|||.+|... +++. -.++++...+... ...
T Consensus 78 ~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~ 146 (254)
T d1g6ha_ 78 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDR 146 (254)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTS
T ss_pred HHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-----------CCC
T ss_conf 833872577642478874232143013330345045665421353289999999999876196302-----------059
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH-HCCEEEEEEC
Q ss_conf 987552489999999998713999999807865605999999999964195668965999825710454-1798999949
Q 000521 726 KGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAIS-AADMVVVMDK 804 (1446)
Q Consensus 726 ~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~-~aD~Ii~l~~ 804 (1446)
...+|||||||||++|||+..+|++++||||+++||+...+.|++. +..-.-+++|+|++||+++.+. .||+|++|++
T Consensus 147 ~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~-i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 147 KAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH-VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred CHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf 5356991888899999999759272324397656999999999999-999997899899994769999986999999969
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 87999529668873
Q 000521 805 GQVKWIGSSADLAV 818 (1446)
Q Consensus 805 G~i~~~G~~~~l~~ 818 (1446)
|+++..|+++|+..
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEECHHHHHH
T ss_conf 98999966899865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.5e-35 Score=287.31 Aligned_cols=206 Identities=21% Similarity=0.276 Sum_probs=174.8
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18999999984499884220013997489299999799987889999972578799746999696179999476714608
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1297 (1446)
-++++||+.+| +|++|||+|++||.+||+|++|||||||+++|.|+. +.+|+|.++|.|+...+.+.++...+
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEEECCCCCC------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCE
T ss_conf 99998741571------555888899489899999899980999999994887-99559999999998699899986402
Q ss_pred EEECCCCC-CCCCHHHHCCCCCC-CC-HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCC----
Q ss_conf 99177777-78757872397999-99-1779999998019999995899405414999999459999999998624----
Q 000521 1298 VVPQSPFL-FEGSLRDNLDPFHM-ND-DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLK---- 1370 (1446)
Q Consensus 1298 ~IpQdp~l-f~gTIR~NLdp~~~-~s-d~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~---- 1370 (1446)
+++|+... |..++.+|+..+.. .. .+.+.++++. ++++..++....+||||||||+++|||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~ 146 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA---------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 146 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHH---------TTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred EEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH---------CCCHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 4512135774420988764100146689999999986---------5987676768445699889999999999851713
Q ss_pred ---CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHH-CCEEEEEECCEEEEEECCCHHH
Q ss_conf ---99889985667798999799999999983-699579986069026751-1979999497899970440012
Q 000521 1371 ---SSKVLCLDECTANVDAQTASILQNAISSE-CKGMTVITIAHRISTVLN-MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1371 ---~~~ILiLDEaTS~lD~~T~~~i~~~i~~~-f~~~TvI~IaHRl~ti~~-~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+|+|++|||||++||..+...+.+.|++. -+++|+|+++|+++.+.. ||+|++|++|++++.|+|.-.|
T Consensus 147 ~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp TCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 38998899971877778989999999999999867999999967799999979999999799899988999981
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8e-34 Score=279.62 Aligned_cols=202 Identities=20% Similarity=0.266 Sum_probs=167.8
Q ss_pred CEEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-----------
Q ss_conf 459998007870478853335541000258409969999958999478999998647567770899809-----------
Q 000521 600 MAVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG----------- 668 (1446)
Q Consensus 600 ~~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g----------- 668 (1446)
.+|+++|.+.+|.. .++ |+|+||++++|++++++||+|||||||++.|.|.+++.+|+|.++|
T Consensus 1 gaI~v~nl~k~yg~---~~v---l~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~ 74 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEI---LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVR 74 (238)
T ss_dssp CCEEEEEEEEEETT---EEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHH
T ss_pred CCEEEEEEEEEECC---EEE---ECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 97899958999999---999---806256884897999999999999999999966988788879998672446839887
Q ss_pred -EEEEECCCCCCCCC-CHHHHHHCCC---CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -09998388888884-4889971499---99945----699999981550778511599732202798755248999999
Q 000521 669 -SIAYVPQVPWILSG-TIRDNILFGK---NYDPQ----SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLA 739 (1446)
Q Consensus 669 -~iay~~Q~pwl~n~-TIreNIlfg~---~~d~~----~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIa 739 (1446)
.++||||++.++.. |++||+.|.. ..+.+ ..+++++.+.|.+.. ..+..+||||||||++
T Consensus 75 ~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 75 KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKI-----------KDRVSTYSKGMVRKLL 143 (238)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGG-----------GSBGGGCCHHHHHHHH
T ss_pred HHEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HHHHHHCCHHHHHHHH
T ss_conf 21867500154687866778889899861799899999999999867978888-----------5045337998989999
Q ss_pred HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf 99987139999998078656059999999999641956689659998257104541-79899994987999529668873
Q 000521 740 LARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAV 818 (1446)
Q Consensus 740 LARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~~~~l~~ 818 (1446)
+|||+.++|++++||||+++||+...+.|++- +..-.-.++|+|++||+++.+.. ||+|++|++|++.+.|+++++..
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~-i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKI-LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH-HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998659998873379889798999999999-99999659989999598999999699999998999999928999986
Q ss_pred C
Q ss_conf 0
Q 000521 819 S 819 (1446)
Q Consensus 819 ~ 819 (1446)
.
T Consensus 223 ~ 223 (238)
T d1vpla_ 223 R 223 (238)
T ss_dssp H
T ss_pred C
T ss_conf 5
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.2e-34 Score=279.54 Aligned_cols=181 Identities=27% Similarity=0.378 Sum_probs=153.8
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC-----------EEEEECCCCCCCCC-CHHHHHHCCC
Q ss_conf 00258409969999958999478999998647567770899809-----------09998388888884-4889971499
Q 000521 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG-----------SIAYVPQVPWILSG-TIRDNILFGK 692 (1446)
Q Consensus 625 ~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g-----------~iay~~Q~pwl~n~-TIreNIlfg~ 692 (1446)
|+||+++ +++++++||+|||||||++.|.|..++++|+|.++| +|+|++|+|-++.. ||+|||.||.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l 95 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHHH
T ss_conf 9999749-979999979998099999999739998962899999998869989928522523144352201557666532
Q ss_pred C-CCH----HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHH
Q ss_conf 9-994----56999999815507785115997322027987552489999999998713999999807865605999999
Q 000521 693 N-YDP----QSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARW 767 (1446)
Q Consensus 693 ~-~d~----~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~ 767 (1446)
. +++ ++.+++++.+.|.+..+ .....|||||||||++|||+..+|++++||||+|+||+.+.+.
T Consensus 96 ~~~~~~~~~~~v~~~l~~~gl~~~~~-----------~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~ 164 (240)
T d2onka1 96 RNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164 (240)
T ss_dssp TTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHH-----------CCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf 33677889999999998638375665-----------7944489999899999877751677067528655588799999
Q ss_pred HHHHHHCCCCCC--CCEEEEECCCCCHHHH-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf 999964195668--9659998257104541-798999949879995296688730
Q 000521 768 ILSNAIMGPHML--QKTRILCTHNVQAISA-ADMVVVMDKGQVKWIGSSADLAVS 819 (1446)
Q Consensus 768 I~~~~i~g~ll~--~kTvIlvTh~~~~l~~-aD~Ii~l~~G~i~~~G~~~~l~~~ 819 (1446)
+++. +.. +.+ +.|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 165 i~~~-i~~-l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 165 LMEE-LRF-VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHH-HHH-HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHH-HHH-HHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCC
T ss_conf 9999-999-9874397699981899999996999999989999999069998329
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-33 Score=276.46 Aligned_cols=190 Identities=23% Similarity=0.355 Sum_probs=157.3
Q ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEE
Q ss_conf 18999999984499884220013997489299999799987889999972578799746999696179999476714608
Q 000521 1218 LIEFQNVTMRYKPSLPAALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFA 1297 (1446)
Q Consensus 1218 ~I~f~nvs~~Y~~~~~~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~ 1297 (1446)
.|+++|++++|+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. .|.+++
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~ 73 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIF 73 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEE
T ss_pred EEEEEEEEEEEC---CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCEE
T ss_conf 599998999939---928842088985998999999999719999999966205677889999896267-----367089
Q ss_pred EEECCCCCCCC-CHHHHCCC----C-CCCCHHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99177777787-57872397----9-999917799999980199999958994054149999994599999999986249
Q 000521 1298 VVPQSPFLFEG-SLRDNLDP----F-HMNDDLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKS 1371 (1446)
Q Consensus 1298 ~IpQdp~lf~g-TIR~NLdp----~-~~~sd~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~ 1371 (1446)
++||++.++.. |+++|+.. + ...+++++.++++..++. +++..++ .||+|||||+++|||++.+
T Consensus 74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~LSgG~~qrv~ia~al~~~ 143 (200)
T d1sgwa_ 74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL------DLKKKLG----ELSQGTIRRVQLASTLLVN 143 (200)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC------CTTSBGG----GSCHHHHHHHHHHHHTTSC
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC------CCCCCCC----CCCCCHHHHHHHHHHHHCC
T ss_conf 99501357888289999999997548863799999999874885------6301268----6897188889999988649
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEEC
Q ss_conf 9889985667798999799999999983699579986069026751197999949
Q 000521 1372 SKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILILDH 1426 (1446)
Q Consensus 1372 ~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~ 1426 (1446)
|++++|||||++||.++...+.+.|.+..+++++++|+|+- .+.-||.+.+|.+
T Consensus 144 ~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp CSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf 98999868620169999999999999998679999999916-2544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.9e-30 Score=252.90 Aligned_cols=195 Identities=21% Similarity=0.316 Sum_probs=159.7
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC------------
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809------------
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG------------ 668 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g------------ 668 (1446)
.++++|++.+ ..|+++||+|++||+++|+||+|||||||+++|.|.. +.+|+|.++|
T Consensus 3 il~~~dv~~~----------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~ 71 (231)
T d1l7vc_ 3 VMQLQDVAES----------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 71 (231)
T ss_dssp EEEEEEECCT----------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHH
T ss_pred EEEEECCCCC----------CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHH
T ss_conf 9999874157----------1555888899489899999899980999999994887-9955999999999869989998
Q ss_pred -EEEEECCCCCC-CCCCHHHHHHCCCC--CCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf -09998388888-88448899714999--994569999998155077851159973220279875524899999999987
Q 000521 669 -SIAYVPQVPWI-LSGTIRDNILFGKN--YDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAV 744 (1446)
Q Consensus 669 -~iay~~Q~pwl-~n~TIreNIlfg~~--~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAv 744 (1446)
..+|.+|+.-. +..++.+|+.++.. ...++.+++++.+.|++. .+.+..+||||||||+++|||+
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSgG~~Qrv~iA~al 140 (231)
T d1l7vc_ 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVV 140 (231)
T ss_dssp HHEEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-----------HCCCHHHCCHHHHHHHHHHHHH
T ss_conf 64024512135774420988764100146689999999986598767-----------6768445699889999999999
Q ss_pred CC-------CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH-HHHCCEEEEEECCEEEEECCHHHH
Q ss_conf 13-------9999998078656059999999999641956689659998257104-541798999949879995296688
Q 000521 745 YH-------GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQA-ISAADMVVVMDKGQVKWIGSSADL 816 (1446)
Q Consensus 745 Y~-------~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~-l~~aD~Ii~l~~G~i~~~G~~~~l 816 (1446)
.+ +|++++||||+++||+...+.+++- +..-..+++|+|++||+++. ...||+|++|++|++++.|+.+|+
T Consensus 141 ~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~-i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev 219 (231)
T d1l7vc_ 141 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI-LSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEV 219 (231)
T ss_dssp HHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHH-HHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHH
T ss_pred HHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 8517133899889997187777898999999999-999986799999996779999997999999979989998899998
Q ss_pred HH
Q ss_conf 73
Q 000521 817 AV 818 (1446)
Q Consensus 817 ~~ 818 (1446)
..
T Consensus 220 ~~ 221 (231)
T d1l7vc_ 220 LT 221 (231)
T ss_dssp SC
T ss_pred HC
T ss_conf 18
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=4e-29 Score=242.51 Aligned_cols=182 Identities=23% Similarity=0.376 Sum_probs=145.6
Q ss_pred EEEEEECEEEECCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC--------EEEE
Q ss_conf 59998007870478853335541000258409969999958999478999998647567770899809--------0999
Q 000521 601 AVIMQDATCSWYCNNEEEQNVVLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASG--------SIAY 672 (1446)
Q Consensus 601 ~i~~~~~sf~w~~~~~~~~~~~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g--------~iay 672 (1446)
.++++|.+++|+ .++ |+|+||++++|++++|+||+|||||||++.|.|.++|.+|+|.++| +++|
T Consensus 2 ~lev~~ls~~y~----~~v---l~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~ 74 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPV---LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 74 (200)
T ss_dssp EEEEEEEEEESS----SEE---EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEE
T ss_pred EEEEEEEEEEEC----CEE---EECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEE
T ss_conf 599998999939----928---8420889859989999999997199999999662056778899998962673670899
Q ss_pred ECCCCCCCCC-CHHHHHHC-----CCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 8388888884-48899714-----99999456999999815507785115997322027987552489999999998713
Q 000521 673 VPQVPWILSG-TIRDNILF-----GKNYDPQSYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYH 746 (1446)
Q Consensus 673 ~~Q~pwl~n~-TIreNIlf-----g~~~d~~~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~ 746 (1446)
+||++.++.. |++||+.+ +.+.+++...+.++...+. |+ .++-.+||||||||+++|||+.+
T Consensus 75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-----------~~~~~~LSgG~~qrv~ia~al~~ 142 (200)
T d1sgwa_ 75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DL-----------KKKLGELSQGTIRRVQLASTLLV 142 (200)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-CT-----------TSBGGGSCHHHHHHHHHHHHTTS
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC-CC-----------CCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 9501357888289999999997548863799999999874885-63-----------01268689718888999998864
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEEEEC
Q ss_conf 9999998078656059999999999641956689659998257104541798999949
Q 000521 747 GSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVVMDK 804 (1446)
Q Consensus 747 ~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~l~~ 804 (1446)
+|++++||||+++||+.+.+.+++. +.. +.+++++++++|+ +.+..||.+.+|.+
T Consensus 143 ~~~llllDEPt~gLD~~~~~~i~~~-l~~-~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 143 NAEIYVLDDPVVAIDEDSKHKVLKS-ILE-ILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHH-HHH-HHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHH-HHH-HHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf 9989998686201699999999999-999-9867999999991-62544161234010
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=1.3e-20 Score=175.35 Aligned_cols=305 Identities=10% Similarity=0.060 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997596999999999999999999999999999842588824799999999999999999999999999999999999
Q 000521 269 ICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSGHLDGYVLAIALGLTSILKSFFDTQYSFHLSKLKLKLRS 348 (1446)
Q Consensus 269 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~g~~l~~~l~l~~~~~~~~~~~~~~~~~r~~~~~r~ 348 (1446)
..+.|++.++...++.++..++....|++++.+++.+-.+.+...-+.+++.++.+.++..++.....+...+.+.++..
T Consensus 10 ~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 89 (319)
T d3b60a2 10 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 89 (319)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999999999999999999999874468778999999999999997645335466544343100011
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998449933247799669999999679999999999-999997999999999998667679999999999999
Q 000521 349 SIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVSGLAITILL 427 (1446)
Q Consensus 349 ~L~~~Iy~K~L~l~~~~~~~~~~g~ivnLms~D~~ri~~~~~~-~~~lw~~pi~i~i~~~lL~~~lG~a~l~g~~v~~~~ 427 (1446)
.+...+|+|.++.+....++.+.|++++.++.|++.+.+.... ........+.++.+++.++..-...++..++++++.
T Consensus 90 ~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~ 169 (319)
T d3b60a2 90 TMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIV 169 (319)
T ss_dssp HHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 00047777650101111023332211111212121000011111200112334456688888765200210256689999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999954899998192799999999999999999999999999999999999
Q 000521 428 IPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAWCVFFWATT 507 (1446)
Q Consensus 428 ~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~gwe~~~~~~i~~~R~~El~~~~~~~~l~~~~~~~~~~~ 507 (1446)
..+.....++..+.+++..+..++..+...|.++|++.||.+++|+.+.++.++..++..+...+...............
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (319)
T d3b60a2 170 SIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 249 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99887666687787898876445677887776248723531110102456666653135677888887777406401000
Q ss_pred HHHHH--HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 79999--9999999981998778689999999999999999999999999999999999999728988
Q 000521 508 PTLFS--LFTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 573 (1446)
Q Consensus 508 ~~~~~--~~tf~~y~~~~~~L~~~~~Ftslsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 573 (1446)
..+.. +..++.|....+.++++..++.+.+...+..|+..++..++.+.++.+|.+|+.++|+.|+
T Consensus 250 ~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 250 ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 00023799999999998099789999999999999999999999999999999999999999966998
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=4.4e-20 Score=171.05 Aligned_cols=316 Identities=15% Similarity=0.174 Sum_probs=237.2
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57699987---412178999999999999999843566766431135887877650257899999999999999999999
Q 000521 882 LTVYKNYA---KFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYSTSFYLVVLCIFCMFNSFLTLVRAFS 958 (1446)
Q Consensus 882 ~~~y~~y~---~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~ 958 (1446)
|++++..+ +...+ ...+.+++.++..+.....++.++..+|.............+.+++.++.++..++..++.+.
T Consensus 1 Wk~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 1 WQTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp CHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9689999999999999-999999999999999999999999999987446877899999999999999764533546654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999987449744545777337999987005341110279999999999977886525876868899
Q 000521 959 FAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFFL 1038 (1446)
Q Consensus 959 ~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~~ 1038 (1446)
....+.+...++++++++++++.|+++|++.+.|++++|+++|++.+...+...+...+......++..+.+.+..|.++
T Consensus 80 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 159 (319)
T d3b60a2 80 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 159 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf 43431000110004777765010111102333221111121212100001111120011233445668888876520021
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998998999999998620613767987422238986539389999999999999999999999998
Q 000521 1039 LLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTAS 1118 (1446)
Q Consensus 1039 ~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~~ 1118 (1446)
++.+....++..+...+.+..++..+...+..+...++..|.++|+.+||+|++|+.+.+++.+..+...+........+
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSAS 239 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02566899999988766668778789887644567788777624872353111010245666665313567788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 56899999999999999999999851588876763299999999999999999999999999999986899999998418
Q 000521 1119 LWLSLRLQLLAAFIISFIATMAVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYMDV 1198 (1446)
Q Consensus 1119 ~wl~~~l~~i~~~~~~~~~~~~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~~~ 1198 (1446)
.+......++..+...++... +.. ....+..+.|.+...+.+...+..++..+...+.++.++.+|.+|+.+++|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~l~~---g~~-~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~ 315 (319)
T d3b60a2 240 SISDPIIQLIASLALAFVLYA---ASF-PSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 315 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHS-SSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCHHHHHHHHHHHHHHH---HHH-HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 740640100000023799999---999-9980997899999999999999999999999999999999999999999669
Q ss_pred CCCC
Q ss_conf 7100
Q 000521 1199 PQEE 1202 (1446)
Q Consensus 1199 ~~E~ 1202 (1446)
|+|+
T Consensus 316 ~~E~ 319 (319)
T d3b60a2 316 EQEK 319 (319)
T ss_dssp CCSC
T ss_pred CCCC
T ss_conf 9899
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=6.1e-20 Score=169.96 Aligned_cols=306 Identities=13% Similarity=0.122 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999975969999999999999999999999999998425888--24---7--999999999999999999999999999
Q 000521 268 AICCAYGYPYICLGLLKVVNDSIGFAGPLLLNKLIKFLQQGSG--HL---D--GYVLAIALGLTSILKSFFDTQYSFHLS 340 (1446)
Q Consensus 268 ~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~--~~---~--g~~l~~~l~l~~~~~~~~~~~~~~~~~ 340 (1446)
...+.|++.++...++.++..++....|++++.+++.+.++.. .. . ...++.++++..+...++.....+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999998626774215568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999998449933247799669999999679999999999-9999979999999999986676799999
Q 000521 341 KLKLKLRSSIMTIIYQKCLYVRLAERSEFSDGEIQTFMSVDTDRTVNLANS-FHDAWSLPFQIGVALYLLYTQVKFAFVS 419 (1446)
Q Consensus 341 r~~~~~r~~L~~~Iy~K~L~l~~~~~~~~~~g~ivnLms~D~~ri~~~~~~-~~~lw~~pi~i~i~~~lL~~~lG~a~l~ 419 (1446)
+.+.+++..+...+|+|.++++....++.+.|++++.++.|++.+.+.... +...+...+.+++++..+...-...++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985567788887665402332100012221100011113321001113454201114665334654400001468889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999548999981927999999999999999999999999999
Q 000521 420 GLAITILLIPVNKWIANLIANATEKMMKQKDERIRRTGEILTHIRTLKMYGWEQIFSSWLMKTRSSEVKHLSTRKYLDAW 499 (1446)
Q Consensus 420 g~~v~~~~~~~~~~~~~~~~~~q~~~~~~~d~Rv~~~~e~L~~ik~IK~~gwe~~~~~~i~~~R~~El~~~~~~~~l~~~ 499 (1446)
.++++.+...+...+.++..+..++..+..++..+.+.|.++|++.||.+++|+.+.++..+..++..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99988777777764123332026778989999997878875597023467641110023302231111015677652000
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999799999--999999981998778689999999999999999999999999999999999999728988
Q 000521 500 CVFFWATTPTLFSL--FTFGLFALMGHQLDAAMVFTCLALFNSLISPLNSFPWVINGLIDAFISIRRLTRFLGCSE 573 (1446)
Q Consensus 500 ~~~~~~~~~~~~~~--~tf~~y~~~~~~L~~~~~Ftslsl~~~l~~pl~~lp~~i~~~~~a~~s~~RI~~fL~~~e 573 (1446)
..........+... ..++.+....+.++++.+++.+.++..+..|+..+...++.+.++.+|.+||.++|+.|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0111110120558999999999998499889999999999999999999999999999999999999999977999
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.90 E-value=7.3e-20 Score=169.34 Aligned_cols=311 Identities=15% Similarity=0.222 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_conf 9998741217899999999999999984356676643113588787765--02578-----9999999999999999999
Q 000521 885 YKNYAKFSGWFITLVICLSAILMQASRNGNDLWLSYWVDTTGSSQTKYS--TSFYL-----VVLCIFCMFNSFLTLVRAF 957 (1446)
Q Consensus 885 y~~y~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~--~~~~l-----~~~~~l~~~~~~~~~~~~~ 957 (1446)
+..|++...+.....+ ++.++..+.....++.++..+|.......... ...++ ..+.++.+...++.....+
T Consensus 5 l~~~~k~~k~~~~~~~-~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 83 (323)
T d2hyda2 5 YLQFVKPYKYRIFATI-IVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQY 83 (323)
T ss_dssp HHHHHGGGHHHHHHHH-HHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999-999999999999999999999998626774215568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998744974454577733799998700534111027999999999997788652587686889
Q 000521 958 SFAFGSLRAAVKVHNTLLTKIVNAPVLFFDQTPGGRILNRFSSDLYMIDDSLPFILNILLANFVGLLGIAVVLSYVQVFF 1037 (1446)
Q Consensus 958 ~~~~~~~~~~~~lh~~ll~~il~~p~~ff~~~~~G~ilnRfs~D~~~id~~l~~~l~~~~~~~~~~i~~~~~i~~~~~~~ 1037 (1446)
...+.+.+...++++++++++++.|++||++.++|++++|+++|++.+++.....+...+..+...++.++.+.+..|.+
T Consensus 84 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 163 (323)
T d2hyda2 84 LAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKL 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999985567788887665402332100012221100011113321001113454201114665334654400001468
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999899899999999862061376798742223898653938999999999999999999999999
Q 000521 1038 LLLLVPFWFIYSKLQFFYRSTSRELRRLDSVSRSPIYASFTETLNGSSTIRAFKSEDYFMAKFKEHVVLYQRTSYSELTA 1117 (1446)
Q Consensus 1038 ~~~~~pl~~~~~~i~~~y~~~sr~l~rl~~~~~spl~~~~~Etl~Gl~tIraf~~e~~~~~~~~~~ld~~~~~~~~~~~~ 1117 (1446)
+++.++...++..+...+.+..++..+...+..+.+.+++.|+++|+++||+|++|+.+.+++.+..+...+........
T Consensus 164 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~ 243 (323)
T d2hyda2 164 TLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243 (323)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHH
T ss_conf 88999988777777764123332026778989999997878875597023467641110023302231111015677652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8568999999999999999999-998515888767632999999999999999999999999999999868999999984
Q 000521 1118 SLWLSLRLQLLAAFIISFIATM-AVIGSRGNLPATFSTPGLVGLALSYAAPIVSLLGNFLSSFTETEKEMVSLERVLEYM 1196 (1446)
Q Consensus 1118 ~~wl~~~l~~i~~~~~~~~~~~-~v~~~~~~~~~~~~~~g~vgl~l~~~~~~~~~l~~l~~~~~~~e~~~~sveRi~~~~ 1196 (1446)
+.+.......+..+....+... ..... .+..+.|.+...+.+...+..++..+...+.++.....|.+|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elL 318 (323)
T d2hyda2 244 NAYSFAAINTVTDIGPIIVIGVGAYLAI-----SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLI 318 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0000111110120558999999999998-----49988999999999999999999999999999999999999999997
Q ss_pred CCCCC
Q ss_conf 18710
Q 000521 1197 DVPQE 1201 (1446)
Q Consensus 1197 ~~~~E 1201 (1446)
|.++|
T Consensus 319 d~e~e 323 (323)
T d2hyda2 319 DEDYD 323 (323)
T ss_dssp TCCCS
T ss_pred CCCCC
T ss_conf 79998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.42 E-value=6.6e-15 Score=130.17 Aligned_cols=160 Identities=11% Similarity=0.007 Sum_probs=107.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999799987889999972578799746999696179999476714608991777777875787239799999177999
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~~i~~ 1327 (1446)
||+|+|++|||||||++.+.+.+++..|.+.+++.+....+.+.........++.+.++..+...+....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY-------- 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 899998999389999999981488886469987713288887653112336677788754113455443023--------
Q ss_pred HHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--HHHHHHHHHHHHHHCCCCEE
Q ss_conf 9998019999995899405414999999459999999998624998899856677989--99799999999983699579
Q 000521 1328 VLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVD--AQTASILQNAISSECKGMTV 1405 (1446)
Q Consensus 1328 aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD--~~T~~~i~~~i~~~f~~~Tv 1405 (1446)
+.+...- .+++|++|+.++++++.++|+++++||++...+ .+....+.+.+++ .++|+
T Consensus 74 --------------~~~~~~~----~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~i 133 (178)
T d1ye8a1 74 --------------GVNVQYF----EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNV 133 (178)
T ss_dssp --------------EECHHHH----HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEE
T ss_pred --------------HCCCCHH----HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCC--CCCEE
T ss_conf --------------0376256----653201378999999740997423027773100457999999987505--79789
Q ss_pred EEECCCCHHHHHCCEEEEEECCEEEEEECC
Q ss_conf 986069026751197999949789997044
Q 000521 1406 ITIAHRISTVLNMDEILILDHGHLVCISFI 1435 (1446)
Q Consensus 1406 I~IaHRl~ti~~~D~I~vl~~G~ive~~~~ 1435 (1446)
|.++|+.+....+|++..+++|++++.+..
T Consensus 134 l~~~h~~~~~~~~~~i~~~~~~~i~~v~~~ 163 (178)
T d1ye8a1 134 VATIPIRDVHPLVKEIRRLPGAVLIELTPE 163 (178)
T ss_dssp EEECCSSCCSHHHHHHHTCTTCEEEECCTT
T ss_pred EEEECCHHHHHHHCEEEEEECCEEEEECCC
T ss_conf 999744778986365998719999998996
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.16 E-value=5.1e-12 Score=107.33 Aligned_cols=146 Identities=10% Similarity=0.030 Sum_probs=96.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECE--EEEECCC-----------CCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 99999589994789999986475677708998090--9998388-----------8888844889971499999456999
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGS--IAYVPQV-----------PWILSGTIRDNILFGKNYDPQSYSE 701 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~--iay~~Q~-----------pwl~n~TIreNIlfg~~~d~~~Y~~ 701 (1446)
-++|+||+|||||||++.|+|++++..|.+...+. .++..|. +.+.+.+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345544302---------
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC--CHHHHHHHHHHHHCCCCCC
Q ss_conf 99981550778511599732202798755248999999999871399999980786560--5999999999964195668
Q 000521 702 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV--DAQVARWILSNAIMGPHML 779 (1446)
Q Consensus 702 vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaL--D~~t~~~I~~~~i~g~ll~ 779 (1446)
..+...-..+++|+++|.+++++...+++++++|||-... +......+.+. + .-.
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~-l---~~~ 129 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI-M---HDP 129 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH-H---TCT
T ss_pred -------------------HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-H---CCC
T ss_conf -------------------30376256653201378999999740997423027773100457999999987-5---057
Q ss_pred CCEEEEECCCCCHHHHCCEEEEEECCEEEEECC
Q ss_conf 965999825710454179899994987999529
Q 000521 780 QKTRILCTHNVQAISAADMVVVMDKGQVKWIGS 812 (1446)
Q Consensus 780 ~kTvIlvTh~~~~l~~aD~Ii~l~~G~i~~~G~ 812 (1446)
++|+|+++|.....+.+|++..+++|++.+.+.
T Consensus 130 ~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 130 NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CCEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf 978999974477898636599871999999899
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=5.2e-10 Score=91.44 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHCCEEEEE
Q ss_conf 9994599999999986----24998899856677989997999999999836-995799860690267511979999
Q 000521 1353 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSEC-KGMTVITIAHRISTVLNMDEILIL 1424 (1446)
Q Consensus 1353 ~LS~GQrQll~LARAl----L~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f-~~~TvI~IaHRl~ti~~~D~I~vl 1424 (1446)
.+|||||.++++|-.+ ..++++++||||+++||.++...+.+.|++.. .++-+|+|||+......+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878999736617999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=7.4e-08 Score=74.48 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEE--EEC
Q ss_conf 9994599999999986----2499889985667798999799999999983699579986069026751197999--949
Q 000521 1353 SFSVGQRQLICLARAL----LKSSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVLNMDEILI--LDH 1426 (1446)
Q Consensus 1353 ~LS~GQrQll~LARAl----L~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~v--l~~ 1426 (1446)
.+|.|||++..++..+ ..+++++++|||-+++++.....+.+.|++..++.-+|++||+...+..+|+++. |++
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~ 298 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN 298 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf 02577766777776655654226744554320335797899999999998554887999989889997324289999969
Q ss_pred C--EEEEEE
Q ss_conf 7--899970
Q 000521 1427 G--HLVCIS 1433 (1446)
Q Consensus 1427 G--~ive~~ 1433 (1446)
| +|++.+
T Consensus 299 g~s~i~~~~ 307 (308)
T d1e69a_ 299 GVSAIVPVE 307 (308)
T ss_dssp SCEEEEECC
T ss_pred CEEEEEEEE
T ss_conf 999999987
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=9.8e-07 Score=65.61 Aligned_cols=76 Identities=32% Similarity=0.338 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHC----CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHCCEEEE--
Q ss_conf 755248999999999871----39999998078656059999999999641956689659998257104541798999--
Q 000521 728 VNLSGGQRARLALARAVY----HGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQAISAADMVVV-- 801 (1446)
Q Consensus 728 ~~LSGGQKqRIaLARAvY----~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~~l~~aD~Ii~-- 801 (1446)
..+|+|||+...++.... ..+.++++|||=++|++.-.+.+.+. +.. ..++.-+|++||+..++..+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~-l~~-~~~~~QviitTHsp~~~~~~d~~~~v~ 295 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRL-LKE-NSKHTQFIVITHNKIVMEAADLLHGVT 295 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHH-HHH-HTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH-HHH-HCCCCEEEEEECCHHHHHHCCCEEEEE
T ss_conf 102577766777776655654226744554320335797899999999-998-554887999989889997324289999
Q ss_pred EECC
Q ss_conf 9498
Q 000521 802 MDKG 805 (1446)
Q Consensus 802 l~~G 805 (1446)
+++|
T Consensus 296 ~~~g 299 (308)
T d1e69a_ 296 MVNG 299 (308)
T ss_dssp ESSS
T ss_pred EECC
T ss_conf 9699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=4.5e-06 Score=60.37 Aligned_cols=73 Identities=27% Similarity=0.335 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHH--H--CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-CCEEEEECCCCCHHHHCCEEEEE
Q ss_conf 7552489999999998--7--13999999807865605999999999964195668-96599982571045417989999
Q 000521 728 VNLSGGQRARLALARA--V--YHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML-QKTRILCTHNVQAISAADMVVVM 802 (1446)
Q Consensus 728 ~~LSGGQKqRIaLARA--v--Y~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~-~kTvIlvTh~~~~l~~aD~Ii~l 802 (1446)
..||||||.+++||=. + +..+++++||||.++||+.....+.+. +.. +.. +.-+|++||+.+.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~-l~~-~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAY-IRR-HRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHH-HHH-HCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH-HHH-HHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999-999-728998899995878999736617999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.82 E-value=0.001 Score=41.69 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=19.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 0996999995899947899999864756777
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTH 661 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~~~~ 661 (1446)
..+.-+.|+|++||||||+++++++++++..
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8378889994035662578999865301456
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.66 E-value=0.0077 Score=34.83 Aligned_cols=154 Identities=10% Similarity=0.111 Sum_probs=75.8
Q ss_pred CEEEEEE--EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHH
Q ss_conf 1000258--40996999995899947899999864756777089980909998388888884488997149999945699
Q 000521 623 LNQVSLC--LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYS 700 (1446)
Q Consensus 623 L~~i~l~--i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~ 700 (1446)
|+++ +. +++|+++.|.|+.|||||+|+.-++-+.....+ .+.|.+-+ ..++.+.
T Consensus 15 LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~------~~~~is~e-----------------~~~~~~~ 70 (242)
T d1tf7a2 15 LDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE------RAILFAYE-----------------ESRAQLL 70 (242)
T ss_dssp HHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC------CEEEEESS-----------------SCHHHHH
T ss_pred HHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC------CCCEEECC-----------------CCHHHHH
T ss_conf 9884-5689869849999918999999999999999987232------44112126-----------------7999999
Q ss_pred HHHHHHCCHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCC---CHHHHHHHHHHHHCC
Q ss_conf 99998155077851-1599732202798755248999999999871-399999980786560---599999999996419
Q 000521 701 ETLKACTLDVDISL-MVGGDMAYIGEKGVNLSGGQRARLALARAVY-HGSDIYMLDDVLSAV---DAQVARWILSNAIMG 775 (1446)
Q Consensus 701 ~vi~aC~L~~Dl~~-lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY-~~~~i~lLDDplSaL---D~~t~~~I~~~~i~g 775 (1446)
+ .++.+..|.+. ...|....+........ .+...-.+.+++. .++++++.|...... +..-....... +..
T Consensus 71 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~-l~~ 146 (242)
T d1tf7a2 71 R--NAYSWGMDFEEMERQNLLKIVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG-VTG 146 (242)
T ss_dssp H--HHHTTSCCHHHHHHTTSEEECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHH-HHH
T ss_pred H--HHHHCCCCHHHHHHCCCEEEEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHH-HHH
T ss_conf 9--99982998699854586179973000101-7999999999998408853322043143048999999999999-999
Q ss_pred CCC-CCCEEEEECCCC-----------CHHHHCCEEEEEEC
Q ss_conf 566-896599982571-----------04541798999949
Q 000521 776 PHM-LQKTRILCTHNV-----------QAISAADMVVVMDK 804 (1446)
Q Consensus 776 ~ll-~~kTvIlvTh~~-----------~~l~~aD~Ii~l~~ 804 (1446)
-+. .+.|++++.|.. ..-..||-|+.++.
T Consensus 147 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 147 YAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf 99986983999985675125544577640464216999998
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.52 E-value=0.0032 Score=37.83 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=68.0
Q ss_pred CEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEEECEEEEECCCCCCCCC-CHHHHHHCCCCCCHHHHH
Q ss_conf 100025840996999995899947899999864-756777089980909998388888884-488997149999945699
Q 000521 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG-EMMLTHGSIHASGSIAYVPQVPWILSG-TIRDNILFGKNYDPQSYS 700 (1446)
Q Consensus 623 L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailG-e~~~~~G~v~~~g~iay~~Q~pwl~n~-TIreNIlfg~~~d~~~Y~ 700 (1446)
=.|+++ . ++++.|+||+.|||||+|+++.= .+-...|.. +...-+-++.-..|+.. -..|++.-|.
T Consensus 28 pNdi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~-vpA~~~~i~~~d~I~~~~~~~d~~~~~~-------- 95 (224)
T d1ewqa2 28 PNDLEM--A-HELVLITGPNMAGKSTFLRQTALIALLAQVGSF-VPAEEAHLPLFDGIYTRIGASDDLAGGK-------- 95 (224)
T ss_dssp CEEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCSEEEEECCC------CC--------
T ss_pred CCEEEE--C-CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCE-EECCCEEEEECCEEEEEECCCCCCCCCC--------
T ss_conf 555884--7-867999788734532345565899999852504-6137519940116999987776023783--------
Q ss_pred HHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCC-
Q ss_conf 9999815507785115997322027987552489999999998713999999807865605999999999964195668-
Q 000521 701 ETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHML- 779 (1446)
Q Consensus 701 ~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~- 779 (1446)
+.=..+-+|++-.----.+..++|+||.+++=|+.-+..+... ++..+.+
T Consensus 96 ----------------------------StF~~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~a-ile~L~~~ 146 (224)
T d1ewqa2 96 ----------------------------STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATA-VAEALHER 146 (224)
T ss_dssp ----------------------------SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHH-HHHHHHHH
T ss_pred ----------------------------CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHH-HHHHHHHC
T ss_conf ----------------------------0789867889877502897727855454568623320025888-88888623
Q ss_pred CCEEEEECCCCCHHHH
Q ss_conf 9659998257104541
Q 000521 780 QKTRILCTHNVQAISA 795 (1446)
Q Consensus 780 ~kTvIlvTh~~~~l~~ 795 (1446)
+.+.+++||..+....
T Consensus 147 ~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 147 RAYTLFATHYFELTAL 162 (224)
T ss_dssp TCEEEEECCCHHHHTC
T ss_pred CCCEEEEEECHHHHHH
T ss_conf 7613786520233322
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.49 E-value=0.0068 Score=35.26 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=68.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 0996999995899947899999864756777089-980909998388888884488997149999945699999981550
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI-HASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v-~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~ 709 (1446)
.++-++.|+||+||||||.+.+++.+++....+| .+-.++-|. -|+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~--~~~------------------------------- 202 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD--IDG------------------------------- 202 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC--CSS-------------------------------
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC--CCC-------------------------------
T ss_conf 41054898767877744779998666257874699962674345--678-------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 77851159973220279875524899999999987139999998078656059999999999641956689659998257
Q 000521 710 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHN 789 (1446)
Q Consensus 710 ~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~ 789 (1446)
--++.+.+ ..|+.---+|..++=++|||++.+|+- |+.+++..++.+.. |+.|+-.-|.
T Consensus 203 --------~~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa~t-----GhlV~tTlHa 261 (401)
T d1p9ra_ 203 --------IGQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQASLT-----GHLVMSTLHT 261 (401)
T ss_dssp --------SEEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHHHT-----TCEEEEEECC
T ss_pred --------CCEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHHHC-----CCEEEEEECC
T ss_conf --------87026558-----767799999999984138889845768---75999999999724-----9858998336
Q ss_pred CCHH
Q ss_conf 1045
Q 000521 790 VQAI 793 (1446)
Q Consensus 790 ~~~l 793 (1446)
-+-.
T Consensus 262 ~~a~ 265 (401)
T d1p9ra_ 262 NTAV 265 (401)
T ss_dssp SSSH
T ss_pred CCHH
T ss_conf 7667
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.17 E-value=0.01 Score=33.78 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=33.6
Q ss_pred CEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCC
Q ss_conf 100025840996999995899947899999864756777089980909998388
Q 000521 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1446)
Q Consensus 623 L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~ 676 (1446)
|+++.-=+.+|++++|.|++|+|||+|+.-++-.+....| .++.|.+-+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-----~~v~~~s~E 73 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-----KKVGLAMLE 73 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-----CCEEEEESS
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCEEEEEEC
T ss_conf 8887469789808999947999799999999972655336-----634576401
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.038 Score=29.34 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=61.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHH
Q ss_conf 96999995899947899999864756777089980909998388888884488997149999945699999981550778
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDI 712 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Dl 712 (1446)
|=-++++|++|+|||||+++++|+-... ++..| ++.++.+.....+.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~------------~~~~~----~~~~~~~~~~~~~~----------------- 47 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAI------------VTDIA----GTTRDVLREHIHID----------------- 47 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSC------------CCSST----TCCCSCEEEEEEET-----------------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEE------------EECCC----CCCCCEEEEEEECC-----------------
T ss_conf 9899998999998999999996888667------------51246----64220476532026-----------------
Q ss_pred HHCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC----CHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 511599732202798--755248999999999871399999980786560----59999999999641956689659998
Q 000521 713 SLMVGGDMAYIGEKG--VNLSGGQRARLALARAVYHGSDIYMLDDVLSAV----DAQVARWILSNAIMGPHMLQKTRILC 786 (1446)
Q Consensus 713 ~~lp~GD~T~IGe~G--~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaL----D~~t~~~I~~~~i~g~ll~~kTvIlv 786 (1446)
+.....+...| ..-.+.++..+..+...|.++++++++-..+.- +.+....+... ...++.+|+|
T Consensus 48 ----~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~iilv 118 (161)
T d2gj8a1 48 ----GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIAR-----LPAKLPITVV 118 (161)
T ss_dssp ----TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHH-----SCTTCCEEEE
T ss_pred ----CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-----CCCCCCEEEC
T ss_conf ----8235413653212246520247899999998741332011025654203455544455542-----0141010204
Q ss_pred CCCCCHHHH
Q ss_conf 257104541
Q 000521 787 THNVQAISA 795 (1446)
Q Consensus 787 Th~~~~l~~ 795 (1446)
-+..+..+.
T Consensus 119 ~NK~Dl~~~ 127 (161)
T d2gj8a1 119 RNKADITGE 127 (161)
T ss_dssp EECHHHHCC
T ss_pred CCHHHHHHH
T ss_conf 654443355
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.013 Score=32.94 Aligned_cols=131 Identities=11% Similarity=0.112 Sum_probs=65.8
Q ss_pred CCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC--CCCCCCCEEEEECEEEEECCCCCCCC-CCHHHHHHCC-CCCCHH
Q ss_conf 4100025840996999995899947899999864--75677708998090999838888888-4488997149-999945
Q 000521 622 VLNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG--EMMLTHGSIHASGSIAYVPQVPWILS-GTIRDNILFG-KNYDPQ 697 (1446)
Q Consensus 622 ~L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailG--e~~~~~G~v~~~g~iay~~Q~pwl~n-~TIreNIlfg-~~~d~~ 697 (1446)
+=.|+++. +.+....|+||+.|||||+|+++.= -|....+-| ...-+-.+--..|+. -...|++.-| +.|
T Consensus 31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~V--pA~~a~~~~~d~I~~~~~~~d~~~~~~S~F--- 104 (234)
T d1wb9a2 31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV--PAQKVEIGPIDRIFTRVGAADDLASGRSTF--- 104 (234)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB--SSSEEEECCCCEEEEEEC-----------C---
T ss_pred CCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE--ECCCEECCCCHHHEEEECCCCCCCCCHHHH---
T ss_conf 64057988-995399995467313689999879999998729767--417666134420234874675343653189---
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 69999998155077851159973220279875524899999999987139999998078656059999999999641956
Q 000521 698 SYSETLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPH 777 (1446)
Q Consensus 698 ~Y~~vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~l 777 (1446)
..+-+|++-.----.+..++|+||++++=|+.-+..+....+.. +
T Consensus 105 ----------------------------------~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~-l 149 (234)
T d1wb9a2 105 ----------------------------------MVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAEN-L 149 (234)
T ss_dssp ----------------------------------HHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHH-H
T ss_pred ----------------------------------HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH-H
T ss_conf ----------------------------------99999999999745466088532223587745666789876454-3
Q ss_pred C-CC-CEEEEECCCCCHH
Q ss_conf 6-89-6599982571045
Q 000521 778 M-LQ-KTRILCTHNVQAI 793 (1446)
Q Consensus 778 l-~~-kTvIlvTh~~~~l 793 (1446)
. ++ ..++++||..+..
T Consensus 150 ~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 150 ANKIKALTLFATHYFELT 167 (234)
T ss_dssp HHTTCCEEEEECSCGGGG
T ss_pred HCCCCCEEEEECCHHHHH
T ss_conf 204544289852468776
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.039 Score=29.25 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=63.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC----CCCCEEEEECEEEEECCCCCCCCCCHHHHHH-CCCCCCHHHHHHHHHH
Q ss_conf 0996999995899947899999864756----7770899809099983888888844889971-4999994569999998
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM----LTHGSIHASGSIAYVPQVPWILSGTIRDNIL-FGKNYDPQSYSETLKA 705 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~----~~~G~v~~~g~iay~~Q~pwl~n~TIreNIl-fg~~~d~~~Y~~vi~a 705 (1446)
.+|+++.|.|+.|+|||+|+..+.-.+. ...+...-.+++.|++-+.- ...+++.+. .+..++...+....+.
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~~~~~~~~~~~ 104 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP--PTAIHHRLHALGAHLSAEERQAVADG 104 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC--HHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCH--HHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 5895899992899989999999999997699721112357873689851234--99999999998623686665312333
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC-----CHHHHHHHHHHHHCCCCCC-
Q ss_conf 1550778511599732202798755248999999999871399999980786560-----5999999999964195668-
Q 000521 706 CTLDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAV-----DAQVARWILSNAIMGPHML- 779 (1446)
Q Consensus 706 C~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaL-----D~~t~~~I~~~~i~g~ll~- 779 (1446)
- ...+. .+...... -....-.+.+ ...+++++++|-..... |..-.+.+++. +.. +.+
T Consensus 105 ~------~~~~~-----~~~~~~~~--~~~~~~~~~~-~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~-l~~-la~~ 168 (274)
T d1nlfa_ 105 L------LIQPL-----IGSLPNIM--APEWFDGLKR-AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGR-MEA-IAAD 168 (274)
T ss_dssp E------EECCC-----TTSCCCTT--SHHHHHHHHH-HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHH-HHH-HHHH
T ss_pred C------EECCC-----CCCCCHHH--HHHHHHHHHH-HCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHH-HHH-HHHC
T ss_conf 2------32145-----67420357--8999999887-526765896281354226652322568999988-777-7644
Q ss_pred -CCEEEEECCC
Q ss_conf -9659998257
Q 000521 780 -QKTRILCTHN 789 (1446)
Q Consensus 780 -~kTvIlvTh~ 789 (1446)
+.|++++.|.
T Consensus 169 ~~~~vi~v~H~ 179 (274)
T d1nlfa_ 169 TGCSIVFLHHA 179 (274)
T ss_dssp HCCEEEEEEEC
T ss_pred CCCCEEHHHHC
T ss_conf 79754013100
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.82 E-value=0.004 Score=37.04 Aligned_cols=33 Identities=39% Similarity=0.547 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 996999995899947899999864756777089
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v 664 (1446)
+|+.++++|++|.|||||+++|+|+.....|.|
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf 698089978898778888773053555010684
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.008 Score=34.69 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+|++|+|||||+++++|+-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.54 E-value=0.0069 Score=35.21 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 8929999979998788999997257879974699
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQIL 1278 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ 1278 (1446)
+|+...++|.||.|||||+++|.+-.....|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 6980899788987788887730535550106842
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.46 E-value=0.061 Score=27.69 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=21.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 74892999997999878899999725
Q 000521 1243 IEGGTQVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1243 I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1446)
+.||+.+-|+|++|+||||++..|.-
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 55895899992899989999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.39 E-value=0.0056 Score=35.90 Aligned_cols=28 Identities=50% Similarity=0.617 Sum_probs=23.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999958999478999998647567770
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G 662 (1446)
-++|+|++|+|||||+++|+|.-....|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 7999899999789999999588867775
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.36 E-value=0.066 Score=27.46 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=14.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999958999478999998647
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe 656 (1446)
++++++|++||||||+.+.|..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.05 E-value=0.02 Score=31.60 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=24.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4099699999589994789999986475
Q 000521 630 LPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 630 i~~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+|+|+++.|.|+.|||||+|..-++-..
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5588799998589898899999999986
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.043 Score=28.91 Aligned_cols=89 Identities=21% Similarity=0.333 Sum_probs=48.1
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 40996999995899947899999864756777089980909998388888884488997149999945699999981550
Q 000521 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709 (1446)
Q Consensus 630 i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~ 709 (1446)
-++-++++++|+.||||||+.+.++-+. |.+.+ +++ .+ ..+.++.+.+
T Consensus 11 ~~~p~liil~G~pGsGKST~a~~l~~~~----~~~~i-------~~D----------~~--------~~~~~~~~~~--- 58 (172)
T d1yj5a2 11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHV-------NRD----------TL--------GSWQRCVSSC--- 58 (172)
T ss_dssp CSSCCEEEEECCTTSSHHHHHHHHTGGG----TCEEE-------EHH----------HH--------CSHHHHHHHH---
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC----CCEEE-------CHH----------HH--------HHHHHHHHHH---
T ss_conf 9999899998999998999999999765----97897-------607----------77--------7888999999---
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEC
Q ss_conf 7785115997322027987552489999-99999871399999980
Q 000521 710 VDISLMVGGDMAYIGEKGVNLSGGQRAR-LALARAVYHGSDIYMLD 754 (1446)
Q Consensus 710 ~Dl~~lp~GD~T~IGe~G~~LSGGQKqR-IaLARAvY~~~~i~lLD 754 (1446)
-..|..|...++. +.+++-.||.+ +.+|+..-.+..++.+|
T Consensus 59 --~~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 59 --QAALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp --HHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred --HHHHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf --9999779995551--76799999999999998558887999948
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.92 E-value=0.051 Score=28.31 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=23.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999979998788999997257879974699969
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1446)
+.|.|+|++||||||+.+.|.+-. .|...++.
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~ 34 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf 799998999999999999999957---99799603
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.0095 Score=34.11 Aligned_cols=47 Identities=11% Similarity=0.205 Sum_probs=32.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHH
Q ss_conf 999995899947899999864756777089980909998388888884488
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIR 685 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIr 685 (1446)
+++|.|++||||||+.+.|-..+....+ ..++..++++.+......+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~----~~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE----HRRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC----CCCEEEEEEEEEECCCHHH
T ss_conf 9999689999876899999999730468----9965999521568984588
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.85 E-value=0.0091 Score=34.26 Aligned_cols=24 Identities=50% Similarity=0.753 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
-++++|++|+|||||+++|+|+-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.82 E-value=0.0085 Score=34.49 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|+|++|+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.81 E-value=0.0034 Score=37.60 Aligned_cols=33 Identities=39% Similarity=0.517 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 996999995899947899999864756777089
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v 664 (1446)
+|+.++++|++|.|||||+++++|+.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCC
T ss_conf 356499987787348789875151767640355
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.70 E-value=0.011 Score=33.71 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.3
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 3997489299999799987889999972578799746999
Q 000521 1240 NFTIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILV 1279 (1446)
Q Consensus 1240 sl~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~I 1279 (1446)
..-++.+..+-|+|+|||||||++++|++.+++..=-|+|
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf 9999837888999403566257899986530145623311
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.0003 Score=45.95 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=64.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCC------CCCC
Q ss_conf 9999979998788999997257879974699969617999947671460899177777787578723979------9999
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPF------HMND 1321 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~------~~~s 1321 (1446)
.|.|+|+.|+|||||+..+.+.+....+.+.+.+.+........+......+.|+...+.....++.... ....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99998899971999999999999977997999984550122211465412343302466543001034441432231100
Q ss_pred HHHHHHHHHHCCHH--HHHHHC---CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 17799999980199--999958---9940541499999945999999999862499889985667798999799999999
Q 000521 1322 DLKIWSVLEKCHVK--EEVEAV---GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDECTANVDAQTASILQNAI 1396 (1446)
Q Consensus 1322 d~~i~~aL~~~~l~--~~i~~l---gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~~~i~~~i 1396 (1446)
+.+ .++..... +.+... +.+..+.+.....+......+.+.+.++..++++++...+..-+... .+.+.+
T Consensus 83 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (189)
T d2i3ba1 83 DLT---SFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPL--ALVEEI 157 (189)
T ss_dssp CHH---HHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCC--TTHHHH
T ss_pred CHH---HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH--HHHHHH
T ss_conf 377---777788999999988762189706861433330535999999999854686599961555775569--999998
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 98369957998606
Q 000521 1397 SSECKGMTVITIAH 1410 (1446)
Q Consensus 1397 ~~~f~~~TvI~IaH 1410 (1446)
++ ..+.+++.++.
T Consensus 158 ~~-~~~~~~~~lt~ 170 (189)
T d2i3ba1 158 RN-RKDVKVFNVTK 170 (189)
T ss_dssp HT-TCCSEEEECCS
T ss_pred HC-CCCCEEEEECH
T ss_conf 67-89974999786
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.52 E-value=0.01 Score=33.89 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699999589994789999986475677
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~~~~ 660 (1446)
|.+++|+||+||||||+.+.+..+.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~ 29 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNL 29 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 7499998999999999999998458997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=94.38 E-value=0.059 Score=27.80 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=36.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 09969999958999478999998647567770899809099983888888844889971499999456999
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 701 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~ 701 (1446)
..+.+.+++|+.||||||+.+.|...+.. ..++ ..++...........+.++..+....
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~----~~~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~ 62 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHA----AFLD--------GDFLHPRRNIEKMASGEPLNDDDRKP 62 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC----EEEE--------GGGGCCHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCC----CEEC--------HHHHHHHHHHHHHCCCCCEEHHHHHH
T ss_conf 98718999899998989999999998697----8310--------36645998853002476300113477
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.23 E-value=0.12 Score=25.37 Aligned_cols=174 Identities=16% Similarity=0.239 Sum_probs=79.3
Q ss_pred CCCEEEEEEECCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHH
Q ss_conf 220013997489299999799987889999972-5787997469996961799994767146089917777778757872
Q 000521 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDN 1313 (1446)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~-rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~N 1313 (1446)
.|+++.--+.+|+.+-|.|++|+||||++.-+. ++..-..-.+.+=. -..+.+.+..|+.. ...+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s---~E~~~~~~~~r~~~-----------~~~~ 89 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM---LEESVEETAEDLIG-----------LHNR 89 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE---SSSCHHHHHHHHHH-----------HHTT
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE---ECCCHHHHHHHHHH-----------HHHC
T ss_conf 688874697898089999479997999999999726553366345764---01111357769999-----------8645
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHHHC-CCCHH-HHCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCC-----CC
Q ss_conf 3979999917799999980199999958-99405-41499999945999999999862--4998899856677-----98
Q 000521 1314 LDPFHMNDDLKIWSVLEKCHVKEEVEAV-GLETF-VKESGISFSVGQRQLICLARALL--KSSKVLCLDECTA-----NV 1384 (1446)
Q Consensus 1314 Ldp~~~~sd~~i~~aL~~~~l~~~i~~l-gLdt~-i~e~G~~LS~GQrQll~LARAlL--~~~~ILiLDEaTS-----~l 1384 (1446)
+... . .+..-...++...+....+.. +.+.. ..+........ .++...+... .+++++++|=.+- +-
T Consensus 90 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~ 165 (277)
T d1cr2a_ 90 VRLR-Q-SDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASGE 165 (277)
T ss_dssp CCGG-G-CHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC-------
T ss_pred CCCH-H-HCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCC
T ss_conf 8710-1-012222214567788898874035214662143310689--99998654321367625997054212034654
Q ss_pred CHHHH--HHHHHHHHHHC--CCCEEEEECCCC----------------HHH-------HHCCEEEEEEC
Q ss_conf 99979--99999999836--995799860690----------------267-------51197999949
Q 000521 1385 DAQTA--SILQNAISSEC--KGMTVITIAHRI----------------STV-------LNMDEILILDH 1426 (1446)
Q Consensus 1385 D~~T~--~~i~~~i~~~f--~~~TvI~IaHRl----------------~ti-------~~~D~I~vl~~ 1426 (1446)
+..++ ..+.+.++... .+++|++++|=- +.+ ..+|.++.+..
T Consensus 166 ~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r 234 (277)
T d1cr2a_ 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 234 (277)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf 430677899999999976501655203103563224445543333211212343001503869999984
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.07 E-value=0.13 Score=25.15 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=62.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCH
Q ss_conf 40996999995899947899999864756777089980909998388888884488997149999945699999981550
Q 000521 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLD 709 (1446)
Q Consensus 630 i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~ 709 (1446)
+++..-+.+.||.|+|||++.+++.++... .+-+++ +
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~~---------~~~~~~------------------------------~---- 74 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQA---------NFISIK------------------------------G---- 74 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTTC---------EEEEEC------------------------------H----
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHCC---------CEEEEE------------------------------H----
T ss_conf 998875788789987630477887877189---------479988------------------------------7----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCH---------HHHHHHHHH---HHCCCC
Q ss_conf 77851159973220279875524899999999987139999998078656059---------999999999---641956
Q 000521 710 VDISLMVGGDMAYIGEKGVNLSGGQRARLALARAVYHGSDIYMLDDVLSAVDA---------QVARWILSN---AIMGPH 777 (1446)
Q Consensus 710 ~Dl~~lp~GD~T~IGe~G~~LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~---------~t~~~I~~~---~i~g~l 777 (1446)
.|+.. +..| ...++-|-.+.+|--..|-|+++||.=+.... ...+.+... .+.+ .
T Consensus 75 ~~l~~------~~~~------~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~ 141 (265)
T d1r7ra3 75 PELLT------MWFG------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-M 141 (265)
T ss_dssp HHHHT------SCTT------THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC---
T ss_pred HHHHH------CCCC------CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-C
T ss_conf 99525------3165------158999999999986398435687546324557876788737999999999999628-6
Q ss_pred CC-C-CEEEEECCCCCHHH
Q ss_conf 68-9-65999825710454
Q 000521 778 ML-Q-KTRILCTHNVQAIS 794 (1446)
Q Consensus 778 l~-~-kTvIlvTh~~~~l~ 794 (1446)
.. + .-+|.+||+++.++
T Consensus 142 ~~~~~v~vi~ttn~~~~ld 160 (265)
T d1r7ra3 142 STKKNVFIIGATNRPDIID 160 (265)
T ss_dssp ----CCEEEECCBSCTTTS
T ss_pred CCCCCEEEEEECCCCHHCC
T ss_conf 7779989999179922279
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.014 Score=32.73 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999589994789999986475677
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~ 660 (1446)
.++|+|+.|||||||++.|+.++...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.96 E-value=0.0084 Score=34.52 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 929999979998788999997257879
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLTPI 1272 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~ 1272 (1446)
|..+.|+||+||||||+.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.012 Score=33.27 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999799987889999972578799
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPIC 1273 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~ 1273 (1446)
.++|+|.+|||||||++.|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 89999189998999999999999977
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.89 E-value=0.015 Score=32.61 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
+|+|+|++|+|||||+++|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=0.062 Score=27.64 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999958999478999998647567
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
..+.||.|+||||+..+++-++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l~~ 59 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESIFG 59 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 998899999889999999976227
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.81 E-value=0.0073 Score=35.01 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=38.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC
Q ss_conf 8929999979998788999997257879974699969617999947671460899177777
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1305 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~l 1305 (1446)
+|+...++|.||.|||||+++|.+-.....|.|.-.. .-+.++-|.+--+-+...++
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~----~rGrHTTt~~~l~~~~gg~i 152 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHL----GRGKHTTRHVELIHTSGGLV 152 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------------------CCCCCEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCCCC----CCCCEEEEEEEEEECCCCEE
T ss_conf 3564999877873487898751517676403555335----89712443478886279789
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.79 E-value=0.013 Score=32.98 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999589994789999986475
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.|++++++|+.||||||+.+.+..++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.028 Score=30.43 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=38.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCC---CHHHHHHHHHHHCC
Q ss_conf 996999995899947899999864756777089980909998388888884488997149999---94569999998155
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNY---DPQSYSETLKACTL 708 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~---d~~~Y~~vi~aC~L 708 (1446)
+|.+++|+||+|+||+||.+.++-+.+...-.. .+.|..-.| |++=.-|..| +++.+++-+++=.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~----~is~TTR~~-------R~~E~~G~dY~Fvs~~~F~~~i~~g~f 69 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV----SVSHTTRQP-------RPGEVHGEHYFFVNHDEFKEMISRDAF 69 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE----CCCEECSCC-------CTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEE----EEEEECCCC-------CCCCCCCCCCEEECHHHHHHHHHHHHH
T ss_conf 980999999999999999999986398668427----888763678-------865543212334328999987542111
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.71 E-value=0.016 Score=32.23 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++|+|+.++|||||++++.|.-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=93.62 E-value=0.025 Score=30.77 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCHHHHHCCEEEEEECCEEEEEE
Q ss_conf 4599999999986249988998566779899979-99999999836995799860690267511979999497899970
Q 000521 1356 VGQRQLICLARALLKSSKVLCLDECTANVDAQTA-SILQNAISSECKGMTVITIAHRISTVLNMDEILILDHGHLVCIS 1433 (1446)
Q Consensus 1356 ~GQrQll~LARAlL~~~~ILiLDEaTS~lD~~T~-~~i~~~i~~~f~~~TvI~IaHRl~ti~~~D~I~vl~~G~ive~~ 1433 (1446)
..+...+..+...++++.+++++=.-..-+...+ ....+.++....++.+|+|....+...+-...--...-.+.+..
T Consensus 65 ~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~iS 143 (161)
T d2gj8a1 65 EVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLS 143 (161)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECC
T ss_pred CCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 2024789999999874133201102565420345554445554201410102046544433558879872799679997
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.55 E-value=0.022 Score=31.16 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|++|+|||||+++|.|+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.55 E-value=0.024 Score=30.97 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+++|.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.02 Score=31.53 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=35.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE------------EECCEECCCCCHHHHHCCE
Q ss_conf 892999997999878899999725787997469------------9969617999947671460
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQI------------LVDGLNIINTPVRDLRGRF 1296 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I------------~IDG~di~~i~~~~LR~~i 1296 (1446)
.|..+-|+|||||||+||.+.|+.-.+...-.. .+||+|---++.+...+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i 64 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHHH
T ss_conf 9809999999999999999999863986684278887636788655432123343289999875
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.49 E-value=0.018 Score=31.85 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999589994789999986475677
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~ 660 (1446)
.+.|+|..|||||||+..++.++...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99998099998999999999999867
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.16 Score=24.39 Aligned_cols=88 Identities=19% Similarity=0.171 Sum_probs=48.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHH
Q ss_conf 48929999979998788999997257879974699969617999947671460899177777787578723979999917
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDL 1323 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~ 1323 (1446)
+..+.|-++|..||||||+...++.- .|.+.|+. +++++ -.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~---------------------------~~ 52 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS---------------------------WQ 52 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS---------------------------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH---------------------------HH
T ss_conf 99989999899999899999999976----59789760--------77778---------------------------88
Q ss_pred HHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf 79999998019999995899405414999999459999-99999862499889985
Q 000521 1324 KIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQL-ICLARALLKSSKVLCLD 1378 (1446)
Q Consensus 1324 ~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQl-l~LARAlL~~~~ILiLD 1378 (1446)
.+.+.++. .+. .|.+..++. .+.+..+|+. +.+||..=-+..++.+|
T Consensus 53 ~~~~~~~~-----~l~-~g~~vIiD~--t~~~~~~R~~~~~~a~~~~~~~~~v~l~ 100 (172)
T d1yj5a2 53 RCVSSCQA-----ALR-QGKRVVIDN--TNPDVPSRARYIQCAKDAGVPCRCFNFC 100 (172)
T ss_dssp HHHHHHHH-----HHH-TTCCEEEES--CCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred HHHHHHHH-----HHH-CCCCCEEEC--CCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99999999-----997-799955517--6799999999999998558887999948
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.39 E-value=0.032 Score=29.90 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 8929999979998788999997257879974699969
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1446)
.|+.|.|+|++||||||+.+.|.+-+... -+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHCCC--EEEECH
T ss_conf 98599998899998899999999995999--799068
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.38 E-value=0.032 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
.++++|+.|+|||||+++++|+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.34 E-value=0.031 Score=29.99 Aligned_cols=23 Identities=48% Similarity=0.807 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++++|++|+|||||+++++|+-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.29 E-value=0.019 Score=31.65 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.|+|||||++++.|+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.012 Score=33.17 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 69999958999478999998647567770899
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIH 665 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~ 665 (1446)
..+.|+||.|+|||||++.+..++....+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~ 33 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD 33 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 69999889997199999999999997799799
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.026 Score=30.63 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCC
Q ss_conf 9999958999478999998647567770899809099983888888
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWIL 680 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~ 680 (1446)
+++|.|++||||||+.+.|.-.+...... ....++..++++.|-.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~-~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC-CCCCCEEEEECCCCCC
T ss_conf 99998999787999999999996410134-5788439993465322
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.24 E-value=0.17 Score=24.11 Aligned_cols=25 Identities=40% Similarity=0.696 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999979998788999997257
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.+=+|||+|++|+|||||+++|++-
T Consensus 7 ~~~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 7 DAIKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8888999999999999999999778
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.019 Score=31.79 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 099699999589994789999986475677
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~~~ 660 (1446)
.+.-.++|+|+.|+|||||+..+...+...
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 983289743899998999999999999756
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.17 E-value=0.046 Score=28.65 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|+|+.|||||||++.++...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.059 Score=27.85 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8409969999958999478999998647567
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
-+++|+++.|.|+.|||||+|+..++.....
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~~~ 49 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTCQL 49 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9859979999958999999999999999988
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.034 Score=29.68 Aligned_cols=22 Identities=45% Similarity=0.890 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
.++++|.+|+|||||++++.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.017 Score=32.03 Aligned_cols=23 Identities=48% Similarity=0.638 Sum_probs=13.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979998788999997257
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
-+|+|+|++++|||||+++|.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 78999889999899999998589
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.05 E-value=0.029 Score=30.31 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=24.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5840996999995899947899999864756
Q 000521 628 LCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 628 l~i~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+.-++|..+-++|.+||||||+.+.+.-.+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8589986999989999998999999998877
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.94 E-value=0.029 Score=30.30 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC---CEEEECCE
Q ss_conf 2999997999878899999725787997---46999696
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTPICG---GQILVDGL 1282 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~---G~I~IDG~ 1282 (1446)
..+||+|++|||||||+..|.+.+.... |.|.-|+-
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.89 E-value=0.039 Score=29.22 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=26.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 489299999799987889999972578799746
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1446)
.++-.+-+.|||||||||.+.++++..+....+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf 410548987678777447799986662578746
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.058 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHH
Q ss_conf 99999799987889999972578799746999696179999476714608991777777875787
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRD 1312 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~ 1312 (1446)
.|||.|++||||||+.+.|..++.-..+ ..++.+|++|.+..+...++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~ 129 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLK 129 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHH
T ss_conf 9999689999876899999999730468-----------------99659995215689845888
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.048 Score=28.55 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=19.5
Q ss_pred HHHHCCCCCEEEECC--CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 998713999999807--865605999999999964195668965999825710
Q 000521 741 ARAVYHGSDIYMLDD--VLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNVQ 791 (1446)
Q Consensus 741 ARAvY~~~~i~lLDD--plSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~~ 791 (1446)
++-...+.|++++|- .++.-|. .+.+. +. -.++-+++|-+..+
T Consensus 129 ~~~~~~~~d~~l~~~~~~~~~~d~----~l~~~-l~---~~~k~~~~V~nK~D 173 (400)
T d1tq4a_ 129 EKMKFYEYDFFIIISATRFKKNDI----DIAKA-IS---MMKKEFYFVRTKVD 173 (400)
T ss_dssp HHTTGGGCSEEEEEESSCCCHHHH----HHHHH-HH---HTTCEEEEEECCHH
T ss_pred HHHHHHCCEEEEEECCCCCCHHHH----HHHHH-HH---HCCCCEEEEEECCC
T ss_conf 874332265999965888878899----99999-99---76998799970863
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.62 E-value=0.04 Score=29.13 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+|.++|+||+|||||+++|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.13 Score=25.15 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=22.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699999589994789999986475
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++-..++|+||.||||||+.+.|...+
T Consensus 6 ~~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 6 DQVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997289998999999899999999985
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.53 E-value=0.037 Score=29.39 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999589994789999986475
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
..++|+|+.|||||||.++|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.52 E-value=0.051 Score=28.30 Aligned_cols=27 Identities=37% Similarity=0.668 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699999589994789999986475
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
|+|..++|.|+.||||||+.+.|.-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.46 E-value=0.22 Score=23.34 Aligned_cols=23 Identities=39% Similarity=0.650 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+|..+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.44 E-value=0.22 Score=23.31 Aligned_cols=24 Identities=33% Similarity=0.297 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
-+.+.||.|||||++.+++..++.
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 799889699988999999862010
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.34 E-value=0.23 Score=23.22 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
-+.+.||.|||||++.+++..|+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.077 Score=26.93 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=31.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCC
Q ss_conf 8409969999958999478999998647567770899809099983888
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~p 677 (1446)
=+|+|+++.|.|+.|||||+|..-++-........-...+.+.|...+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~ 78 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 78 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9869969999838999889999999998631243126896399994023
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.26 E-value=0.049 Score=28.46 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++|+|++++|||||+++|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.18 E-value=0.21 Score=23.52 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9748929999979998788999997257
Q 000521 1242 TIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
-+++|..+-|.|++|+|||++..-+..-
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9869849999918999999999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.074 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=33.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCC
Q ss_conf 84099699999589994789999986475677708998090999838888
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pw 678 (1446)
=+|+|+++.|.|+.|||||+|...++.+.............+.|.....-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 82 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHH
T ss_conf 97689799998899887889999999999744431666624887401777
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.24 Score=23.01 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=25.2
Q ss_pred CEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 100025840996999995899947899999864756
Q 000521 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 623 L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++++....+ .-+.+.||.|||||++.+++..|+.
T Consensus 37 ~~~~g~~~~--~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 37 FQKLGGKIP--KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp C-----CCC--CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHCCCCCC--CEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 998699988--8678668998882289999999829
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.04 E-value=0.041 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999995899947899999864756
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+.--++++|+.|+|||||++.+.|+-.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 777899999999898999999967887
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=91.96 E-value=0.066 Score=27.45 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999997999878899999725787
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
++|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.93 E-value=0.16 Score=24.45 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=56.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC--CCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
Q ss_conf 999958999478999998647567--770899809099983888888844889971499999456999999815507785
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMML--THGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSETLKACTLDVDIS 713 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~~--~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~vi~aC~L~~Dl~ 713 (1446)
++|+|++|+|||||..++|..... ..|++ .+..+. ..|+++..++-+ ....-..
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v---------~~g~~~------------~D~~~~E~~r~~---ti~~~~~ 60 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRV---------EEGTTT------------TDYTPEAKLHRT---TVRTGVA 60 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCG---------GGTCCS------------SCCSHHHHHTTS---CCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHCCC---------HHCCCC------------CCCHHHHHHHCC---EEEEECC
T ss_conf 9999488980999999999970975530662---------222113------------562698887387---6875102
Q ss_pred --HCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf --1159973220279875-5248999999999871399999980786560599999999996419566896599982571
Q 000521 714 --LMVGGDMAYIGEKGVN-LSGGQRARLALARAVYHGSDIYMLDDVLSAVDAQVARWILSNAIMGPHMLQKTRILCTHNV 790 (1446)
Q Consensus 714 --~lp~GD~T~IGe~G~~-LSGGQKqRIaLARAvY~~~~i~lLDDplSaLD~~t~~~I~~~~i~g~ll~~kTvIlvTh~~ 790 (1446)
.+.+---+.|.--|.. .+|- ..+ + .| -++.-|++. |...++-+.|.+++ +.+. .++..++++-+.+
T Consensus 61 ~~~~~~~~~n~iDtPGh~dF~~e-~~~-a-l~--~~D~avlvv-da~~Gv~~~t~~~~-~~~~----~~~~p~~i~iNk~ 129 (267)
T d2dy1a2 61 PLLFRGHRVFLLDAPGYGDFVGE-IRG-A-LE--AADAALVAV-SAEAGVQVGTERAW-TVAE----RLGLPRMVVVTKL 129 (267)
T ss_dssp EEEETTEEEEEEECCCSGGGHHH-HHH-H-HH--HCSEEEEEE-ETTTCSCHHHHHHH-HHHH----HTTCCEEEEEECG
T ss_pred CCCCCCCCEEEECCCCHHHHHHH-HHH-H-HC--CCCCEEEEE-ECCCCCCCHHHHHH-HHHH----HCCCCCCCCCCCC
T ss_conf 22234321068806815543355-654-3-12--467338984-23577421157887-7655----4044310133320
Q ss_pred C
Q ss_conf 0
Q 000521 791 Q 791 (1446)
Q Consensus 791 ~ 791 (1446)
+
T Consensus 130 D 130 (267)
T d2dy1a2 130 D 130 (267)
T ss_dssp G
T ss_pred C
T ss_conf 2
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.91 E-value=0.056 Score=28.01 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0996999995899947899999864756
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++|.++.++|+.||||||+.+++.-.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=91.89 E-value=0.056 Score=28.04 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|..|+|||||++.+.+.-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.18 Score=23.97 Aligned_cols=21 Identities=48% Similarity=0.585 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|..|+|||||++.+++.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.80 E-value=0.26 Score=22.77 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCC
Q ss_conf 99699999589994789999986475677708998090999838888
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pw 678 (1446)
+...++++||+|+||||.+.-|.-.+. ..| .+++.+.=+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~Dt~ 51 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-----FKVGLVGADVY 51 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT-----CCEEEEECCCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CCEEEEEEECC
T ss_conf 998999989999998999999999999-779-----93699972023
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.75 E-value=0.067 Score=27.38 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999995899947899999864756
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
...++.|.|++||||||+.+.|..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 985999989999998999999999728
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.74 E-value=0.1 Score=25.94 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=61.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 89299999799987889999972578799746999696179999476714608991777777875787239799999177
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLK 1324 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~~ 1324 (1446)
+-..|.|+|+.||||||+...|..-+ |-+.|+.-| -+|+.+ .+...-....+++-.+......|..
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~~~~~~~ 72 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQIVPQEI 72 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTCCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HHCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 97289998999999899999999985----990885358-------999886---2010178899887640000232036
Q ss_pred HHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99999980199999958994054149999994599999999986249988998566
Q 000521 1325 IWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1446)
Q Consensus 1325 i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1380 (1446)
....+...-...... .-+..+-++ +.....|...+.+.+.....++.||=+
T Consensus 73 ~~~~~~~~~~~~~~~--~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~ 123 (196)
T d1ukza_ 73 TLALLRNAISDNVKA--NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP 123 (196)
T ss_dssp HHHHHHHHHHHHHHT--TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCC--CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 789999998864003--777535404---313689999999861545543125798
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=0.061 Score=27.74 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|+|+.|+|||||++++.|+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.22 Score=23.28 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|.||.||||||..+.|.-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.48 E-value=0.063 Score=27.63 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999979998788999997257879
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPI 1272 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~ 1272 (1446)
.|||.|++||||||+.+.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9997898878999999999998363
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.068 Score=27.33 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999995899947899999864756
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
..+++|+||+|+||+||.+.++.+.+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 77199999899999999999997097
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.067 Score=27.39 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+.+.-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.33 E-value=0.069 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+.++-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=91.21 E-value=0.088 Score=26.45 Aligned_cols=22 Identities=45% Similarity=0.745 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
+|+++|++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.06 E-value=0.078 Score=26.87 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
+|+++|++|+|||||++.|.+-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.06 E-value=0.074 Score=27.04 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=68.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEEE--CEEEEECCCCCCCCCCHHH------HHHCCCCCCHHHHHHHHHH
Q ss_conf 999995899947899999864756-777089980--9099983888888844889------9714999994569999998
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM-LTHGSIHAS--GSIAYVPQVPWILSGTIRD------NILFGKNYDPQSYSETLKA 705 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~-~~~G~v~~~--g~iay~~Q~pwl~n~TIre------NIlfg~~~d~~~Y~~vi~a 705 (1446)
-++|+|..+||||||+++|+|+-- |.+-..... -.+-|-. ++....+.-.. ..-....+|.......+..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 104 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTH-LPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIR 104 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEE-CCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCCCHHHHHHHHHCCCCEECCHHHHHHHHHH
T ss_conf 5999818989799999999689978878975406888999945-776667653065667762688622378999999999
Q ss_pred HC---------CHHHHHHC-----CCCCCCCCCCCCCCCCH--H-----HHHHHHHHHHHCCCCC--EEEECCCCCCCCH
Q ss_conf 15---------50778511-----59973220279875524--8-----9999999998713999--9998078656059
Q 000521 706 CT---------LDVDISLM-----VGGDMAYIGEKGVNLSG--G-----QRARLALARAVYHGSD--IYMLDDVLSAVDA 762 (1446)
Q Consensus 706 C~---------L~~Dl~~l-----p~GD~T~IGe~G~~LSG--G-----QKqRIaLARAvY~~~~--i~lLDDplSaLD~ 762 (1446)
.. ...+.... -..+.+.|.--|.+-+. + +.+--.+++...++++ |+...+.......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~ 184 (306)
T d1jwyb_ 105 DTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLAN 184 (306)
T ss_dssp HCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTT
T ss_pred HHHHHCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99874277776566506998247898880686588864436688403589999999999982777516876325631003
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 999999999641956689659998257
Q 000521 763 QVARWILSNAIMGPHMLQKTRILCTHN 789 (1446)
Q Consensus 763 ~t~~~I~~~~i~g~ll~~kTvIlvTh~ 789 (1446)
.....+.+. +.+ . ..+|++++|+-
T Consensus 185 ~~~~~~~~~-~~~-~-~~r~i~Vitk~ 208 (306)
T d1jwyb_ 185 SDALQLAKE-VDP-E-GKRTIGVITKL 208 (306)
T ss_dssp CSHHHHHHH-HCS-S-CSSEEEEEECT
T ss_pred CHHHHHHHH-HCC-C-CCEEEEEEECC
T ss_conf 499999997-386-7-88589998204
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.05 E-value=0.086 Score=26.52 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999997999878899999725787
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
...|.|+|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.05 E-value=0.073 Score=27.09 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.|+|+|++|+|||||+++|.+-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998899999999689
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.05 E-value=0.0035 Score=37.56 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.9
Q ss_pred CEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 10002584099699999589994789999986
Q 000521 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSIL 654 (1446)
Q Consensus 623 L~~i~l~i~~G~l~~IvG~vGSGKStLL~ail 654 (1446)
.++.++++.+| +++|+|++||||||++.||.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.05 E-value=0.088 Score=26.46 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=24.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999997999878899999725787
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
+.|..|-++|.+||||||+..+|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.98 E-value=0.018 Score=31.94 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|++|+|||||++++.|+-
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=90.98 E-value=0.071 Score=27.21 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=22.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995899947899999864756
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
.+++|+|+.||||||+.+.|..++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=90.93 E-value=0.092 Score=26.31 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999878899999725787
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.086 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489299999799987889999972578
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.091 Score=26.36 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=31.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCC
Q ss_conf 999997999878899999725787997469996961799994767146089917777778
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFE 1307 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~ 1307 (1446)
.|||.|++||||||+.+.|...+.... +. .-...+.+++||.+...
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~--~~------------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE--VD------------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG--SC------------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC--CC------------CCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101--34------------57884399934653224
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.82 E-value=0.071 Score=27.19 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 96999995899947899999864756777
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTH 661 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~~~~~ 661 (1446)
+.+++|.|+.||||||+.+.|.-.+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 98899989999898999999999998769
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.72 E-value=0.32 Score=22.01 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=13.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999589994789999986475
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
..++++||.|+||||.+.-+.-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.63 E-value=0.27 Score=22.67 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.55 E-value=0.096 Score=26.17 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299999799987889999972578
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
...+.|+|||||||+||.+.|++-.
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7719999989999999999999709
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.54 E-value=0.083 Score=26.65 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999997999878899999725787
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.+|+|+|++|||||||.+.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.53 E-value=0.061 Score=27.73 Aligned_cols=41 Identities=29% Similarity=0.358 Sum_probs=26.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCC
Q ss_conf 99999589994789999986475677708998090999838888
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW 678 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pw 678 (1446)
+++|.|+.|||||||...|.-.+....|. .-.++.+|++.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~---~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCC---CCCEEEECCCCC
T ss_conf 99837998788999999999999987277---860676356777
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.40 E-value=0.092 Score=26.31 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.|+|+|++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.35 E-value=0.079 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 92999997999878899999725787997469
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLTPICGGQI 1277 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I 1277 (1446)
...|+|.|+.||||||+.+.|...+.....++
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 98899989999898999999999998769986
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=90.31 E-value=0.35 Score=21.75 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHH
Q ss_conf 4998899856677989997999999999836--9957998606902675
Q 000521 1370 KSSKVLCLDECTANVDAQTASILQNAISSEC--KGMTVITIAHRISTVL 1416 (1446)
Q Consensus 1370 ~~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f--~~~TvI~IaHRl~ti~ 1416 (1446)
.+..++++||.-.+-|++-...+-..+-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf 9772785545456862332002588888888623761378652023332
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.22 Score=23.31 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|+.|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.24 E-value=0.31 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995899947899999864756
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
..+.||.|+||||+..++..|+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.23 E-value=0.079 Score=26.84 Aligned_cols=26 Identities=38% Similarity=0.553 Sum_probs=14.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 92999997999878899999725787
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.-+|||.|+.|||||||+..|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.17 E-value=0.14 Score=24.83 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=71.1
Q ss_pred CEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHCCCCCCHHHHHH
Q ss_conf 100025-8409969999958999478999998647567770899809099983888888844889971499999456999
Q 000521 623 LNQVSL-CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILFGKNYDPQSYSE 701 (1446)
Q Consensus 623 L~~i~l-~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlfg~~~d~~~Y~~ 701 (1446)
|+++-- -+++|+++.|.|+.|+|||+|..-++.......+ ..+.|++-+.- ...++....- ..++.+.+.
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-----~~~~~~s~e~~--~~~~~~~~~~-~~~~~~~~~- 85 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEET--PQDIIKNARS-FGWDLAKLV- 85 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSC--HHHHHHHHGG-GTCCHHHHH-
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-----CCCCCCCCCCC--HHHHHHHHHH-CCCCHHHHH-
T ss_conf 98855689969839999947999999999999999998568-----87420126679--9999999998-499848988-
Q ss_pred HHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HH-HHHHHC-CCCCEEEECCCCCCC----CHHHHHHHHHHHHC
Q ss_conf 999815507785115997322027987552489999-99-999871-399999980786560----59999999999641
Q 000521 702 TLKACTLDVDISLMVGGDMAYIGEKGVNLSGGQRAR-LA-LARAVY-HGSDIYMLDDVLSAV----DAQVARWILSNAIM 774 (1446)
Q Consensus 702 vi~aC~L~~Dl~~lp~GD~T~IGe~G~~LSGGQKqR-Ia-LARAvY-~~~~i~lLDDplSaL----D~~t~~~I~~~~i~ 774 (1446)
+.-.. ... +.....+.-...+...... +. +.+++. .++++++.|...+-. +......++..++.
T Consensus 86 --~~~~~-~~~------~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~ 156 (242)
T d1tf7a1 86 --DEGKL-FIL------DASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA 156 (242)
T ss_dssp --HTTSE-EEE------ECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred --HHCCH-HHH------HHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf --71430-244------421033544443024589999999999886312220020788998760572678999999999
Q ss_pred CCCCCCCEEEEECCCCC---------HHH-HCCEEEEEE
Q ss_conf 95668965999825710---------454-179899994
Q 000521 775 GPHMLQKTRILCTHNVQ---------AIS-AADMVVVMD 803 (1446)
Q Consensus 775 g~ll~~kTvIlvTh~~~---------~l~-~aD~Ii~l~ 803 (1446)
-....+.|++++.|... ... .+|.++.++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 157 RLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 998639716884210255422246762335362999988
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=90.11 E-value=0.087 Score=26.49 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|+|+.||||||+.+.|.-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.10 E-value=0.19 Score=23.83 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=23.6
Q ss_pred CEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 100025840996999995899947899999864
Q 000521 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1446)
Q Consensus 623 L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailG 655 (1446)
++.--+.+ .|.=+.+.|++|+||||+...++.
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.99 E-value=0.093 Score=26.26 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958999478999998647567
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
.++|+||+||||+||.+.++.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.99 E-value=0.1 Score=25.89 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
++++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.78 E-value=0.12 Score=25.36 Aligned_cols=23 Identities=43% Similarity=0.790 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|+|++++|||||+++|++.-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.65 E-value=0.11 Score=25.69 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999958999478999998647567
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
..+.+.||.||||||+.+++.+|+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.53 E-value=0.15 Score=24.55 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 409969999958999478999998647567
Q 000521 630 LPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 630 i~~G~l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
+++|+++.|.|+.|+|||+|..-++-....
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~~~ 60 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNLQN 60 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 628859999917999989999999999985
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.4 Score=21.30 Aligned_cols=47 Identities=9% Similarity=-0.000 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHH-HHHHHHH--CCCCEEEEECCCCHHH
Q ss_conf 249988998566779899979999-9999983--6995799860690267
Q 000521 1369 LKSSKVLCLDECTANVDAQTASIL-QNAISSE--CKGMTVITIAHRISTV 1415 (1446)
Q Consensus 1369 L~~~~ILiLDEaTS~lD~~T~~~i-~~~i~~~--f~~~TvI~IaHRl~ti 1415 (1446)
..+..++++||.-.+-+++-...+ ...++.. ..++.+++.+|..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 54660885322235877456667898764543204544289852468776
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.49 E-value=0.12 Score=25.53 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999995899947899999864756
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+.-+++|.|..||||||+++.|..++.
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 861999889999888999999998707
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=89.48 E-value=0.12 Score=25.37 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 29999979998788999997257879974699969
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1446)
..|.|+|++||||||+.+.|.+-++ +...++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf 0899989999998999999999809---9889830
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.46 E-value=0.32 Score=21.99 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|..|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=89.46 E-value=0.4 Score=21.27 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=15.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999589994789999986475
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++..++++||.|+||||.+.-|...+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97799998999998899999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.44 E-value=0.15 Score=24.73 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
-++++|+.|+|||||++.+.|+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.43 E-value=0.11 Score=25.83 Aligned_cols=44 Identities=32% Similarity=0.543 Sum_probs=28.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCEECCCCCHHHHH
Q ss_conf 999997999878899999725787-------------9974699969617999947671
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTP-------------ICGGQILVDGLNIINTPVRDLR 1293 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~-------------~~~G~I~IDG~di~~i~~~~LR 1293 (1446)
.|.|+|||||||+||.+.|..-.+ |..|+ .||+|..-++.+...
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~ 59 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFK 59 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHH
T ss_conf 699989999998999999997488662477764268999997--578432432488999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.40 E-value=0.17 Score=24.19 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 099699999589994789999986475
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
|+|--++++||.||||||..+.|.-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=89.36 E-value=0.16 Score=24.33 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489299999799987889999972578
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
|+|-++.|+|+.||||||..+.|..-+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.25 E-value=0.33 Score=21.94 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCCCCCCHHHHHHC
Q ss_conf 99699999589994789999986475677708998090999838888888448899714
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWILSGTIRDNILF 690 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl~n~TIreNIlf 690 (1446)
+|.+++|-|.-||||||+.+.+.-.+.. +|.+. . .|...+....-||+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~~-~-----~p~~~~~~g~~ir~~l~~ 53 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLL-K-----FPERSTRIGGLINEYLTD 53 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEEE-E-----SSCTTSHHHHHHHHHHHC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCEEE-E-----ECCCCCHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971-97799-9-----789996076767776540
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.24 E-value=0.12 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995899947899999864756
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
.+++++|..||||||+.+.|...+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.22 E-value=0.15 Score=24.54 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCC--CCCCCHHHHHHCCCCC
Q ss_conf 99699999589994789999986475677708998090999838888--8884488997149999
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPW--ILSGTIRDNILFGKNY 694 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pw--l~n~TIreNIlfg~~~ 694 (1446)
+|.+++|-|+.||||||+.+.+...+.. .|. ......++|+ -...-+|+....+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~-~g~-----~~~~~~~ep~~~~~g~~i~~~~~~~~~~ 59 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGI-----RDMVFTREPGGTQLAEKLRSLLLDIKSV 59 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTC-----CCEEEEESSCSSHHHHHHHHHHHSTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCC-----CEEEEECCCCCCCCHHHHHHHHHCCCCC
T ss_conf 9878999899888799999999999996-799-----7399832989961144558988462102
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=89.21 E-value=0.14 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999589994789999986475
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+.--++++|..|||||||++.+.|.-
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 85799999999989899999996688
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.21 Score=23.46 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9748929999979998788999997257
Q 000521 1242 TIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
-+++|+.+-|.|++|||||++..-+..-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.16 Score=24.39 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.|+++|++|+|||||+++|.+-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.07 E-value=0.14 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799987889999972578
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
-+|.|+|+.||||||+.+.|..-+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 979898999999899999999997
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.98 E-value=0.16 Score=24.39 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999589994789999986475
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+..+++|+||.||||||+.+.|.-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99489998999998899999999997
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.97 E-value=0.15 Score=24.72 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
.++|+||+||||+|+.+.++-+.+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999999999999999997488
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.91 E-value=0.16 Score=24.49 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHH
Q ss_conf 59999999998624998--899856677989997999999999836995799860690267
Q 000521 1357 GQRQLICLARALLKSSK--VLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTV 1415 (1446)
Q Consensus 1357 GQrQll~LARAlL~~~~--ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti 1415 (1446)
.+.+.-.+++..++++. |++...++.....+....+.+.+... ..+|++++++- +.+
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~-~~r~i~Vitk~-D~~ 211 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE-GKRTIGVITKL-DLM 211 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS-CSSEEEEEECT-TSS
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCC-CCEEEEEEECC-CCC
T ss_conf 899999999999827775168763256310034999999973867-88589998204-445
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=88.88 E-value=0.14 Score=24.83 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q ss_conf 699999589994789999986
Q 000521 634 SLVAVIGEVGSGKSSLLNSIL 654 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ail 654 (1446)
-+++|+|++||||||+.+.+-
T Consensus 4 ~IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899998988778999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=88.82 E-value=0.44 Score=20.95 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=10.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999995899947899999864
Q 000521 634 SLVAVIGEVGSGKSSLLNSILG 655 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailG 655 (1446)
..++++||.|+||||.+.-|..
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 6899989999988999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=88.77 E-value=0.44 Score=20.92 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=16.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999589994789999986475
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+...++++||.|+||||.+.-|.-.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99899998999998899999999999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.75 E-value=0.15 Score=24.52 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+|+.|+|||||++.+++.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=88.75 E-value=0.092 Score=26.29 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.|||+|++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999899998799999999689
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.69 E-value=0.18 Score=23.99 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 09969999958999478999998647567
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
++|.+++|.|+-||||||+.+.+...+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~ 29 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALCA 29 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 98059999899888999999999999987
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.17 Score=24.20 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=33.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCC
Q ss_conf 840996999995899947899999864756777089980909998388
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~ 676 (1446)
=+++|.++.+.|+.|||||+++..+..+.....| .+.|+.-+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~------~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK------TCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEECCC
T ss_conf 9667358998057774789999999999870898------79998654
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.68 E-value=0.17 Score=24.29 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589994789999986
Q 000521 635 LVAVIGEVGSGKSSLLNSIL 654 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ail 654 (1446)
+++|+|..||||||+.+.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.59 E-value=0.081 Score=26.75 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99699999589994789999986475
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+|..+.++|+.||||||+.+.|.-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.47 E-value=0.16 Score=24.32 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.|||+|+..+|||||+++|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=88.46 E-value=0.1 Score=26.00 Aligned_cols=21 Identities=57% Similarity=0.811 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999979998788999997257
Q 000521 1249 VGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1249 vgIvGrTGSGKSTLl~~L~rl 1269 (1446)
|||+|++|+|||||++.|.+-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.44 E-value=0.34 Score=21.85 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=22.9
Q ss_pred CEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 100025840996999995899947899999864
Q 000521 623 LNQVSLCLPKGSLVAVIGEVGSGKSSLLNSILG 655 (1446)
Q Consensus 623 L~~i~l~i~~G~l~~IvG~vGSGKStLL~ailG 655 (1446)
++.--+ .-.|.=+.++|++|+||||+...++.
T Consensus 5 lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 5 MHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEE-EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 899999-99999999980899998999999998
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.44 E-value=0.12 Score=25.44 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999995899947899999864756
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++.+++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.37 E-value=0.17 Score=24.29 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|+.|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.31 E-value=0.47 Score=20.70 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=23.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 974892999997999878899999725787
Q 000521 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.+++..-+=+.|++|+|||++++++.+.+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 999887578878998763047788787718
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.26 E-value=0.16 Score=24.31 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979998788999997257
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
=||+|||++|+|||||++.+.+-
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 29999999998999999999679
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.25 E-value=0.072 Score=27.16 Aligned_cols=40 Identities=15% Similarity=0.240 Sum_probs=29.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCCCC
Q ss_conf 6999995899947899999864756777089980909998388888
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVPWI 679 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~pwl 679 (1446)
-+++|.|++||||||+.+++...+... | -+++.++|+.+-
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~-~-----v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRRE-G-----VKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHH-T-----CCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-C-----CCEEEEECCCCC
T ss_conf 899998999780999999999997156-9-----976999477787
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=88.22 E-value=0.17 Score=24.22 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
.|||+|++.+|||||+++|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.21 E-value=0.38 Score=21.44 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.++++-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997197
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.05 E-value=0.18 Score=23.95 Aligned_cols=21 Identities=38% Similarity=0.784 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|..|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.02 E-value=0.18 Score=23.92 Aligned_cols=22 Identities=32% Similarity=0.705 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.|+|||||++.+.+.-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999969899999997098
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.97 E-value=0.1 Score=26.04 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999997999878899999725787
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.|-.|-++|.+||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=87.84 E-value=0.15 Score=24.73 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|++|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 899999999898999999965
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=87.62 E-value=0.17 Score=24.17 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.||||||+.+.|.-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=87.58 E-value=0.19 Score=23.80 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+.+.-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.55 E-value=0.21 Score=23.50 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|...+|||||++++.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.46 E-value=0.21 Score=23.47 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++|+|.+.+|||||+.+|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.43 E-value=0.15 Score=24.68 Aligned_cols=22 Identities=45% Similarity=0.730 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999799987889999972578
Q 000521 1249 VGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1249 vgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
|.|+|||||||+||.+.|....
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.38 E-value=0.27 Score=22.58 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
||.++|+.|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.54 Score=20.25 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+.+.-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~ 26 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKR 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989978999999997398
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.17 E-value=0.23 Score=23.16 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 892999997999878899999725787997469996
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVD 1280 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~ID 1280 (1446)
+...|.|+|+.||||||+...|..-+ |-+.|+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf 99489998999998899999999997----992672
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.15 E-value=0.18 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489299999799987889999972578
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+..-||.++|++|+|||||++.|.+-.
T Consensus 11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 11 KKTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 777789999999989899999996788
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=87.14 E-value=0.2 Score=23.60 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999997999878899999725787
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
-.|+|.|..||||||+++.|.+-+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.13 E-value=0.23 Score=23.16 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
.|||+|..||||||+.+.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.12 E-value=0.18 Score=23.94 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999997999878899999725787
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.+..|+|-|..||||||+++.|-..++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.12 E-value=0.21 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999997999878899999725
Q 000521 1247 TQVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~r 1268 (1446)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHC
T ss_conf 9899999999898999999980
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.93 E-value=0.28 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0996999995899947899999864756
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
..+..++|.||.|+|||||+..++-+..
T Consensus 27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 27 LRAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0598799986999829999999999779
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=86.91 E-value=0.23 Score=23.23 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999997999878899999725787
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
..|-++|++||||||+.+.|..-+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 7499989999999999999999969
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.88 E-value=0.52 Score=20.34 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999589994789999986475
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
--++|||-..+|||||++++.+--
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.85 E-value=0.23 Score=23.14 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|+.|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.75 E-value=0.39 Score=21.36 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=17.7
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 84099699999589994789999986
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSIL 654 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ail 654 (1446)
-.-.|.=+.+.|++|+||||+...++
T Consensus 11 v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 11 VDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 99999999998089999999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.73 E-value=0.2 Score=23.57 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=23.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4099699999589994789999986475
Q 000521 630 LPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 630 i~~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++.++.|.||.||||||..+.|.-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.73 E-value=0.24 Score=23.08 Aligned_cols=26 Identities=35% Similarity=0.347 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48929999979998788999997257
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
++.=||.+||+.|+|||||++.|.+-
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98579999999998989999999668
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.66 E-value=0.28 Score=22.43 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958999478999998647567
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
-++|+|.|.+|||||+.+|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=86.64 E-value=0.13 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 996999995899947899999864756
Q 000521 632 KGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 632 ~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+.-.++|+|+.|+|||||+..+...+.
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~ 76 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLT 76 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 815986117998889999999999876
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.59 E-value=0.19 Score=23.79 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999995899947899999864
Q 000521 635 LVAVIGEVGSGKSSLLNSILG 655 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailG 655 (1446)
-++|+|++|||||||..+||-
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999995898998999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=86.54 E-value=0.58 Score=19.97 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=25.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 748929999979998788999997257879974699969617
Q 000521 1243 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1446)
Q Consensus 1243 I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1284 (1446)
+++...+-+.||.|+|||++++++.+.+... -+.+++-++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCCCC--EEEEEHHHH
T ss_conf 9988867866899888228999999982998--799886994
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=86.47 E-value=0.12 Score=25.53 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995899947899999864756
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
--++++|++++|||||+++|.|+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.25 Score=22.85 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.|+|||||++.+++.-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.27 E-value=0.31 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.|+|||||++.+.+.-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.22 E-value=0.29 Score=22.39 Aligned_cols=20 Identities=45% Similarity=0.772 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999589994789999986
Q 000521 635 LVAVIGEVGSGKSSLLNSIL 654 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ail 654 (1446)
+++|+|..||||||..+.+-
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.17 E-value=0.25 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979998788999997257
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
.|++++|++|+|||||++.|.+-
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 98999999999999999999589
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.08 E-value=0.29 Score=22.31 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999997999878899999725787
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
-.|.++|++||||||+.+.|.+.+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=86.06 E-value=0.31 Score=22.13 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=17.8
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 4099699999589994789999986475
Q 000521 630 LPKGSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 630 i~~G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|.++.+.|+.|||||||.++++..+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7998299996687765889999987642
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.90 E-value=0.31 Score=22.18 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 69999958999478999998647567
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
....+.||.|+||||+..++..++..
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~ 78 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGY 78 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 44999879999888999999999875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=85.88 E-value=0.27 Score=22.65 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999979998788999997257
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
=.|||+|..||||||+...|-.+
T Consensus 4 ~IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 89999898877899999999987
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=85.86 E-value=0.24 Score=22.99 Aligned_cols=25 Identities=44% Similarity=0.646 Sum_probs=16.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9299999799987889999972578
Q 000521 1246 GTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1246 GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
.-+|||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.81 E-value=0.29 Score=22.38 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+++.-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.78 E-value=0.33 Score=21.87 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995899947899999864756
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++++|+.|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.73 E-value=0.32 Score=22.05 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+|..|+|||||++.+++.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.51 E-value=0.26 Score=22.75 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=26.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 840996999995899947899999864756
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
.+|++...++.||.|+|||++.+++.+++.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.47 E-value=0.45 Score=20.89 Aligned_cols=25 Identities=44% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958999478999998647567
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
-++++|..|+|||||++.+.+....
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~ 29 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDS 29 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999998992999999999728677
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.41 E-value=0.27 Score=22.67 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+.+.-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979989999999998098
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.37 E-value=0.33 Score=21.91 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|+.|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.31 E-value=0.27 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999589994789999986475
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+--++|+|...+|||||++++.+.-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 7379997899998999999997789
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=85.25 E-value=0.36 Score=21.60 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=29.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCC
Q ss_conf 89299999799987889999972578799746999696179999
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTP 1288 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~ 1288 (1446)
.+..+.+||+||+||||.+.=|-+.+....-++.+=..|....+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~g 48 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA 48 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 97799998999998899999999999977990799981366654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.15 E-value=0.32 Score=21.98 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|+.|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.13 E-value=0.37 Score=21.56 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
.|||+|...+|||||++.|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=0.33 Score=21.92 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.|+|||||++.+++.-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999939999999996299
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.93 E-value=0.34 Score=21.84 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 9999958999478999998647567770
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G 662 (1446)
-..+.||.|+||||+.+++..|+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 4898799997388999999850388853
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.92 E-value=0.29 Score=22.38 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|..|+|||||++.++++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999967899999998688
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.90 E-value=0.3 Score=22.20 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999589994789999986475
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
=.++.|+|+.++|||+||+.++|..
T Consensus 32 v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 32 MVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 7999988999997999999980998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=84.77 E-value=0.31 Score=22.17 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+|++++|||||+.+|++..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~~ 27 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYVA 27 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999478984999999999985
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.74 E-value=0.36 Score=21.66 Aligned_cols=24 Identities=33% Similarity=0.619 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+++|.|..||||||+++.+...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=84.72 E-value=0.4 Score=21.29 Aligned_cols=41 Identities=24% Similarity=0.228 Sum_probs=30.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCC--CCEEEECCEEC
Q ss_conf 489299999799987889999972578799--74699969617
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTPIC--GGQILVDGLNI 1284 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~~~--~G~I~IDG~di 1284 (1446)
+.|..|-++|.+||||||+.+.|...+... --.+.+||-++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.38 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999997999878899999725787
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
+.|-.|+|.|.-||||||++..|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=84.55 E-value=0.38 Score=21.44 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
.++|-||.||||||..+.|.-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.43 E-value=0.32 Score=22.04 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 99999589994789999986475677708998
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMMLTHGSIHA 666 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~ 666 (1446)
.+.|-|+.||||||+++.+..++....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 99998886678999999999986569976998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.42 E-value=0.43 Score=21.02 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
|+.++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999698999999970
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=84.37 E-value=0.014 Score=32.71 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=26.3
Q ss_pred CCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 22001399748929999979998788999997257
Q 000521 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
..++.++.+.+| .+.|+|++||||||++.+|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 870279974998-0899889999879999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.28 E-value=0.37 Score=21.49 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHC-CC
Q ss_conf 99995899947899999864-75
Q 000521 636 VAVIGEVGSGKSSLLNSILG-EM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailG-e~ 657 (1446)
++++|..|+|||||++.+.+ +.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999999298999999973999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.25 E-value=0.42 Score=21.11 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|..|+|||||++.+.+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.19 E-value=0.27 Score=22.57 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|.||.||||||+.+.|.-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.19 E-value=0.41 Score=21.20 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799987889999972578
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
=.|||.|.+|||||||...|...+
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899837998788999999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=84.18 E-value=0.31 Score=22.18 Aligned_cols=42 Identities=21% Similarity=0.474 Sum_probs=34.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCC
Q ss_conf 840996999995899947899999864756777089980909998388
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQV 676 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~ 676 (1446)
=+|.|.++-|.|+.|||||++...+..+.+...| .++|..-+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~------~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG------TCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CEEEEESS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC------EEEEEECC
T ss_conf 8667547898058765227999999999970799------89999887
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.13 E-value=0.33 Score=21.97 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+|.|.|+.||||||+...|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=84.12 E-value=0.27 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|+.|+|||||++.+.++
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.09 E-value=0.33 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|+.|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=83.95 E-value=0.4 Score=21.26 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
.|||+|..||||||..+.|-.
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.95 E-value=0.34 Score=21.87 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.||||||+.+.+...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.94 E-value=0.45 Score=20.85 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
|+.++|..|+|||||++.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.93 E-value=0.37 Score=21.55 Aligned_cols=43 Identities=21% Similarity=0.414 Sum_probs=33.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECEEEEECCCC
Q ss_conf 8409969999958999478999998647567770899809099983888
Q 000521 629 CLPKGSLVAVIGEVGSGKSSLLNSILGEMMLTHGSIHASGSIAYVPQVP 677 (1446)
Q Consensus 629 ~i~~G~l~~IvG~vGSGKStLL~ailGe~~~~~G~v~~~g~iay~~Q~p 677 (1446)
-+|.|.++.+.|+.|||||+++..+..+.....| .+.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~------~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG------VAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTC------EEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC------EEEEEECCC
T ss_conf 8666336999648874889999999998754898------899998976
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=83.92 E-value=0.42 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.91 E-value=0.48 Score=20.61 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
|+.++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.86 E-value=0.42 Score=21.06 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++|+||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.84 E-value=0.27 Score=22.59 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999958999478999998647567
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
...+.||.|+||||+.+++..++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~~ 71 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELFG 71 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 6999789997487999999999873
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.71 E-value=0.53 Score=20.28 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.1
Q ss_pred CCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 42200139974892999997999878899999725
Q 000521 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1446)
.+|.+ -+++|+.+-|.|++|||||++..-+..
T Consensus 25 ~ll~G---Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 25 TLLGG---GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp HHHTS---SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 63179---986996999983899988999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.59 E-value=0.74 Score=19.17 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf 999997999878899999725-----78799746
Q 000521 1248 QVGIVGRTGAGKSSILNALFR-----LTPICGGQ 1276 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r-----l~~~~~G~ 1276 (1446)
||.++|..|+|||||++.+.. -++|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 8999999997999999999739988545766452
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=83.52 E-value=0.36 Score=21.64 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999997999878899999725
Q 000521 1247 TQVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~r 1268 (1446)
=||.++|+.|+|||||++.+.+
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHHC
T ss_conf 7999999999899999999964
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.44 E-value=0.41 Score=21.18 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8929999979998788999997257
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
|.=.|||+|+.++|||||+..|+..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9719999947898499999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.36 E-value=0.38 Score=21.45 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|..|+|||||++.+.+.-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~~ 30 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQSY 30 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999979969899999997399
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=0.42 Score=21.08 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.|+|||||++.++++-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~~ 28 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEKK 28 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949899999997299
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=83.16 E-value=0.43 Score=21.01 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=28.8
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0025840996999995899947899999864756
Q 000521 625 QVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 625 ~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
|.=+.+-+|+-.+|.|+.|+|||+|+..|.....
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4125645787556867999887899999999775
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=83.09 E-value=0.59 Score=19.95 Aligned_cols=150 Identities=16% Similarity=0.126 Sum_probs=68.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCC
Q ss_conf 97489299999799987889999972-57879974699969617999947671460899177777787578723979999
Q 000521 1242 TIEGGTQVGIVGRTGAGKSSILNALF-RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMN 1320 (1446)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~-rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~ 1320 (1446)
-+++|+.+-|.|++|+|||++..-+. .........+.+.. ...+.+.++. ...-.+.
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~~------------------~~~~~~~- 79 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDIIK------------------NARSFGW- 79 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHHH------------------HHGGGTC-
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCC---CCCCHHHHHH------------------HHHHCCC-
T ss_conf 99698399999479999999999999999985688742012---6679999999------------------9998499-
Q ss_pred CHHHHHHHHHHCCHHHHHHHC---CCCH-HHHCCCCCCCH-HHHHHHHHHHHHCC--CCCEEEEECCCCCCCHH-----H
Q ss_conf 917799999980199999958---9940-54149999994-59999999998624--99889985667798999-----7
Q 000521 1321 DDLKIWSVLEKCHVKEEVEAV---GLET-FVKESGISFSV-GQRQLICLARALLK--SSKVLCLDECTANVDAQ-----T 1388 (1446)
Q Consensus 1321 sd~~i~~aL~~~~l~~~i~~l---gLdt-~i~e~G~~LS~-GQrQll~LARAlL~--~~~ILiLDEaTS~lD~~-----T 1388 (1446)
. ..+.+... ..+. ...+.-..+.. -...++.-.+..++ +++++++|-.++-.+.. .
T Consensus 80 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~ 147 (242)
T d1tf7a1 80 D------------LAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVV 147 (242)
T ss_dssp C------------HHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHH
T ss_pred C------------HHHHHHHCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 8------------4898871430244421033544443024589999999999886312220020788998760572678
Q ss_pred HHHHHHHHHHH-CCCCEEEEECCCCHH---------HH-HCCEEEEEE
Q ss_conf 99999999983-699579986069026---------75-119799994
Q 000521 1389 ASILQNAISSE-CKGMTVITIAHRIST---------VL-NMDEILILD 1425 (1446)
Q Consensus 1389 ~~~i~~~i~~~-f~~~TvI~IaHRl~t---------i~-~~D~I~vl~ 1425 (1446)
...+...++.. ..++|++.++|.... .. .+|.++.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 148 RRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999998639716884210255422246762335362999988
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.07 E-value=0.49 Score=20.58 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|..|+|||||++.+++.-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997299
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.05 E-value=0.3 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|+.|+|||||++.+++.-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.97 E-value=0.5 Score=20.53 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|..|+|||||++.+.+.-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~ 30 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999949899999998598
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.97 E-value=0.5 Score=20.52 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999958999478999998647
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe 656 (1446)
.+++|+|+.||||||..+.+..+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.92 E-value=0.45 Score=20.87 Aligned_cols=22 Identities=45% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|..|+|||||++.+.+.-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=82.85 E-value=0.41 Score=21.16 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995899947899999864756
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++++|.|+.||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.81 E-value=0.56 Score=20.12 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|..|+|||||++.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899399999999971
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.79 E-value=0.4 Score=21.25 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.71 E-value=0.5 Score=20.53 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC-----CCCCCCC
Q ss_conf 999997999878899999725-----7879974
Q 000521 1248 QVGIVGRTGAGKSSILNALFR-----LTPICGG 1275 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r-----l~~~~~G 1275 (1446)
||.++|.+|+|||||++.+.+ -+.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEE
T ss_conf 899999899798999999970999876376133
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.64 E-value=0.089 Score=26.43 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
||+++|++|+|||||+++|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.64 E-value=0.45 Score=20.88 Aligned_cols=21 Identities=38% Similarity=0.695 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.63 E-value=0.41 Score=21.17 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|..|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=0.41 Score=21.15 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|+|+.|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=82.58 E-value=0.46 Score=20.81 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999997999878899999725787
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.+.|.|..||||||+.+.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.57 E-value=0.53 Score=20.27 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|..|+|||||++.+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799899999999980
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=82.56 E-value=0.42 Score=21.10 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999589994789999986475
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
+.++++|+.||||||+.+.+.-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=0.52 Score=20.36 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=60.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHH
Q ss_conf 99999799987889999972578799746999696179999476714608991777777875787239799999177999
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDDLKIWS 1327 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd~~i~~ 1327 (1446)
+|.|.|+.||||||..+.|..-+ |-..|+- -+-+|..+ -++...+.-.+.+.+.-+....|+.+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 68 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITIS 68 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----CCCEECH-------HHHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99997999999899999999986----9926768-------89999988---7620468999999970697211340367
Q ss_pred HHHHCCHHHHHHHC-CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---EEEEECC
Q ss_conf 99980199999958-99405414999999459999999998624998---8998566
Q 000521 1328 VLEKCHVKEEVEAV-GLETFVKESGISFSVGQRQLICLARALLKSSK---VLCLDEC 1380 (1446)
Q Consensus 1328 aL~~~~l~~~i~~l-gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~---ILiLDEa 1380 (1446)
.+... +....... .-+..+-++ +...+.|.-.+.+.+-.... ++++|.+
T Consensus 69 ~~~~~-~~~~~~~~~~~~~~~~~g---~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~ 121 (194)
T d1teva_ 69 LLKRE-MDQTMAANAQKNKFLIDG---FPRNQDNLQGWNKTMDGKADVSFVLFFDCN 121 (194)
T ss_dssp HHHHH-HHHHHHHCTTCCEEEEES---CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred HHHHH-HCCCCHHHHCCCCEEECC---CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 88876-412100011245111011---030489999986442105543389962476
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.51 E-value=0.43 Score=21.00 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999995899947899999864756
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++++|-|..||||||+++.|--.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.46 E-value=0.48 Score=20.65 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+|-|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.41 E-value=0.67 Score=19.50 Aligned_cols=30 Identities=17% Similarity=0.200 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 969999958999478999998647567770
Q 000521 633 GSLVAVIGEVGSGKSSLLNSILGEMMLTHG 662 (1446)
Q Consensus 633 G~l~~IvG~vGSGKStLL~ailGe~~~~~G 662 (1446)
..-+.|.||.|+|||++++.++.++....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 881688898999899999999999754468
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.37 E-value=0.54 Score=20.22 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 892999997999878899999725787
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
.|..|.|-|.-||||||++..|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.32 E-value=0.47 Score=20.68 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999979998788999997257
Q 000521 1248 QVGIVGRTGAGKSSILNALFRL 1269 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl 1269 (1446)
||.+||..|+|||||++.+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.28 E-value=0.49 Score=20.56 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999958999478999998647
Q 000521 636 VAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe 656 (1446)
++++|+.|+|||||++.+++.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992999999999719
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.21 E-value=0.24 Score=23.04 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCC
Q ss_conf 9999979998788999997257879974699969617999947671460899177777
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFL 1305 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~l 1305 (1446)
.|||+|.|||||||+.+.|...+... | -..++|+||.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~------------------v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G------------------VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T------------------CCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-C------------------CCEEEEECCCCC
T ss_conf 99998999780999999999997156-9------------------976999477787
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.18 E-value=0.4 Score=21.24 Aligned_cols=23 Identities=39% Similarity=0.665 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++.|+|.-|||||||++-++.+-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=82.13 E-value=0.39 Score=21.35 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC---CCCCCE
Q ss_conf 99999799987889999972578---799746
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT---PICGGQ 1276 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~---~~~~G~ 1276 (1446)
+|+|-||.||||||....|..-+ ..+.|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGd 36 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA 36 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf 99978999879899999999996994787799
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.01 E-value=0.36 Score=21.64 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf 6999995899947899999864756777089
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMMLTHGSI 664 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~~~~G~v 664 (1446)
.-++|+|++|||||+++..++-+.....+.+
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ 81 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRM 81 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 6589990799968999999999998479988
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.94 E-value=0.45 Score=20.82 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
|+.++|..|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999678999999986
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.92 E-value=0.5 Score=20.47 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++|+|+.|+|||||++.+.+.-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999996198
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.85 E-value=0.57 Score=20.02 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 89299999799987889999972578799746
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQ 1276 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~ 1276 (1446)
.|..|+|-|.-||||||++..|...++. .|.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~ 32 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCK 32 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCE
T ss_conf 7689999899888699999999999971-977
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.69 E-value=0.4 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0996999995899947899999864756
Q 000521 631 PKGSLVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 631 ~~G~l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
|++.+ .++||+|||||.|.+++..++.
T Consensus 48 ~~~~i-Ll~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNI-LMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCE-EEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHCCC
T ss_conf 98669-9989999888899999862132
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.61 E-value=0.51 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
.++++||.||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.55 E-value=0.49 Score=20.57 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=6.9
Q ss_pred CCEEEECCCCCC
Q ss_conf 999998078656
Q 000521 748 SDIYMLDDVLSA 759 (1446)
Q Consensus 748 ~~i~lLDDplSa 759 (1446)
+.|+++||.=++
T Consensus 116 ~~IIf~DEIdki 127 (309)
T d1ofha_ 116 NGIVFIDEIDKI 127 (309)
T ss_dssp HCEEEEECGGGG
T ss_pred CCEEEEHHHHHH
T ss_conf 856884246454
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.51 E-value=0.55 Score=20.15 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|..|+|||||++.+.+.-
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCENK 27 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999939899999998299
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.50 E-value=0.54 Score=20.23 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89299999799987889999972578
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
.+..+.|.|+.|+|||||+..+.+-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.48 E-value=0.52 Score=20.34 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|.+|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.47 E-value=0.32 Score=22.01 Aligned_cols=22 Identities=27% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|..|+|||||++.+++.-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949999999997098
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=81.44 E-value=0.5 Score=20.49 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=67.5
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHC--CCCCC-CC
Q ss_conf 99999799987889999972---57879974699969617999947671460899177777787578723--97999-99
Q 000521 1248 QVGIVGRTGAGKSSILNALF---RLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNL--DPFHM-ND 1321 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~---rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NL--dp~~~-~s 1321 (1446)
.|||+|..|||||||+-+|+ +..+ ..|++. ||-.+.+...++..+.+++-+.-..+--..-+-|+ .|+.. +.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~ 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC-CCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH
T ss_conf 999995898998999999999648534-023365-184698565888751886001123431598389995278602269
Q ss_pred HHHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 17799999980199999958994054149999994599999999986249988998---566779899979999999998
Q 000521 1322 DLKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISS 1398 (1446)
Q Consensus 1322 d~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiL---DEaTS~lD~~T~~~i~~~i~~ 1398 (1446)
. +...++..+.. --.|-+.....-.+-++..-.|+. .+-|+|+.+ |-+-+..+ .+.+.|++
T Consensus 86 ~-e~~~~l~~~D~---------avlVvda~~Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~~-----~~l~ei~~ 149 (276)
T d2bv3a2 86 I-EVERSMRVLDG---------AIVVFDSSQGVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADLW-----LVIRTMQE 149 (276)
T ss_dssp T-THHHHHHHCCE---------EEEEEETTTSSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCHH-----HHHHHHHH
T ss_pred H-HHHHHHHHHHH---------EEEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCC-----HHHHHHHH
T ss_conf 9-99999996300---------577322567744669999999998-59997999864456543121-----26899999
Q ss_pred HCC
Q ss_conf 369
Q 000521 1399 ECK 1401 (1446)
Q Consensus 1399 ~f~ 1401 (1446)
.+.
T Consensus 150 ~l~ 152 (276)
T d2bv3a2 150 RLG 152 (276)
T ss_dssp TTC
T ss_pred HHC
T ss_conf 859
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.41 E-value=0.63 Score=19.70 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=26.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC-C----CCCCCCE-----EEECCEEC
Q ss_conf 2999997999878899999725-7----8799746-----99969617
Q 000521 1247 TQVGIVGRTGAGKSSILNALFR-L----TPICGGQ-----ILVDGLNI 1284 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~r-l----~~~~~G~-----I~IDG~di 1284 (1446)
-||.++|..|+|||||++.+.. - ++|+.|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEEE
T ss_conf 389999989929899999997198885447542113103883176798
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.32 E-value=0.39 Score=21.35 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995899947899999864756
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
..+.||.|+||||+.+++..++.
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l~ 58 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKELY 58 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999984999999999970
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=81.25 E-value=0.41 Score=21.21 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999958999478999998647567
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
+.+.||.|+||||+.+++.+|+..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898897998788899999998498
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=81.22 E-value=0.8 Score=18.86 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=17.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999997999878899999725787
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
-+++|||+.-+|||||+++|.+--.
T Consensus 113 ~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 113 IRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 2789986675443555425426615
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=81.19 E-value=0.93 Score=18.35 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=22.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 699999589994789999986475677
Q 000521 634 SLVAVIGEVGSGKSSLLNSILGEMMLT 660 (1446)
Q Consensus 634 ~l~~IvG~vGSGKStLL~ailGe~~~~ 660 (1446)
....+.||.|+||+|+..++..++...
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 059888899875899999999984685
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.15 E-value=0.69 Score=19.37 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=26.5
Q ss_pred CCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 42200139974892999997999878899999725
Q 000521 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~r 1268 (1446)
..|.+ -+++|+.+-|.|++|+|||++...+..
T Consensus 28 ~~lgG---Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 28 KLLGG---GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 73169---976897999988998878899999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=81.05 E-value=0.76 Score=19.08 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=25.6
Q ss_pred CCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4220013997489299999799987889999972
Q 000521 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1267 (1446)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~ 1267 (1446)
.+|.+ -+++|+.+-|.|++|+|||++..-+.
T Consensus 25 ~ll~G---Gl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 25 SVLGG---GLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp HHTTS---SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred HHCCC---CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 72079---86288599999179999899999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.01 E-value=0.63 Score=19.69 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|..|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999961
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.01 E-value=0.53 Score=20.29 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++|+|.+++|||||+.+|++..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999588980999999999999
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=81.00 E-value=0.54 Score=20.21 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9999979998788999997257879974699969
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLTPICGGQILVDG 1281 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG 1281 (1446)
.|.++|.+||||||+.+.|...+ |--.+|.
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~ 31 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS 31 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf 39998999998899999999983----9987836
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=81.00 E-value=0.58 Score=19.99 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+|-|+|+.||||||+...|..-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.00 E-value=0.46 Score=20.75 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99995899947899999864756
Q 000521 636 VAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
++++|.|.+|||||+..||.+..
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~~g 34 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHDSK 34 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99993789898999999999869
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.98 E-value=0.76 Score=19.06 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCCCEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 4220013997489299999799987889999972
Q 000521 1234 AALHDINFTIEGGTQVGIVGRTGAGKSSILNALF 1267 (1446)
Q Consensus 1234 ~vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~ 1267 (1446)
..|.+ -+++|+.+-|.|++|||||++..-+.
T Consensus 27 ~ll~G---Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 27 KLLGG---GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp HHHTS---SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHCC---CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 74269---95588799998589898899999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=80.97 E-value=0.53 Score=20.27 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEC
Q ss_conf 8929999979998788999997257879974699969617
Q 000521 1245 GGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNI 1284 (1446)
Q Consensus 1245 ~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di 1284 (1446)
+-..+.+||+||+||||.+.=|-..+.-..-+|.+=..|.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9979999899999989999999999997799479982321
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.94 E-value=0.84 Score=18.73 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4892999997999878899999725787
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLTP 1271 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~~ 1271 (1446)
+|.=.|||+|...+|||||+..|++...
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9970899997248869999999970412
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.90 E-value=0.95 Score=18.28 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
Q ss_conf 9988998566779899979999999998369957998606902675
Q 000521 1371 SSKVLCLDECTANVDAQTASILQNAISSECKGMTVITIAHRISTVL 1416 (1446)
Q Consensus 1371 ~~~ILiLDEaTS~lD~~T~~~i~~~i~~~f~~~TvI~IaHRl~ti~ 1416 (1446)
+.+++++||+-. +..+....+.+.+.+...++..|+++++.+-+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~ 175 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 175 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf 724999424333-454311122100221356643000102111002
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.74 E-value=0.64 Score=19.63 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999799987889999972578
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
||.++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=80.73 E-value=0.58 Score=19.98 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|+.|+|||||++.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999898999999971
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.65 E-value=0.61 Score=19.83 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999958999478999998647
Q 000521 635 LVAVIGEVGSGKSSLLNSILGE 656 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe 656 (1446)
-++|+|..|+|||||++.++..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.60 E-value=0.6 Score=19.85 Aligned_cols=33 Identities=33% Similarity=0.340 Sum_probs=25.3
Q ss_pred CCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 220013997489299999799987889999972578
Q 000521 1235 ALHDINFTIEGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1235 vL~~isl~I~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+|+.++ +|=-.|+|+|+.++|||+|++.|++..
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 997079---987999988999997999999980998
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.57 E-value=0.77 Score=19.03 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999972
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=80.57 E-value=0.58 Score=19.98 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=33.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCEE
Q ss_conf 97489299999799987889999972578799746-9996961
Q 000521 1242 TIEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQ-ILVDGLN 1283 (1446)
Q Consensus 1242 ~I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~-I~IDG~d 1283 (1446)
-+++|..+-|.|++||||||+...+..-..-..|. ++||.-.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9667358998057774789999999999870898799986544
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.56 E-value=0.64 Score=19.66 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999995899947899999864756
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEMM 658 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~~ 658 (1446)
+++|-||.||||||..+.|.-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.55 E-value=0.75 Score=19.12 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999997999878899999725
Q 000521 1247 TQVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~r 1268 (1446)
=||.++|..|+|||||++.+.+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 2899999899088999999971
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.54 E-value=0.72 Score=19.24 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=25.3
Q ss_pred EEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 000258409969999958999478999998647567
Q 000521 624 NQVSLCLPKGSLVAVIGEVGSGKSSLLNSILGEMML 659 (1446)
Q Consensus 624 ~~i~l~i~~G~l~~IvG~vGSGKStLL~ailGe~~~ 659 (1446)
+...+..++| +.+.||.|||||++.+++..+...
T Consensus 31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~~~ 64 (258)
T d1e32a2 31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANETGA 64 (258)
T ss_dssp HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCE--EEEECCCCCCCHHHHHHHHHHHCC
T ss_conf 8679998864--687669988830899999987488
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.53 E-value=0.6 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999997999878899999725
Q 000521 1248 QVGIVGRTGAGKSSILNALFR 1268 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~r 1268 (1446)
||.++|.+|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999974
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=80.48 E-value=0.47 Score=20.74 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=20.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 489299999799987889999972578
Q 000521 1244 EGGTQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1244 ~~GekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
++...+.+||+||+||||.+.=|...+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999899998999998899999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=80.44 E-value=0.57 Score=20.03 Aligned_cols=174 Identities=18% Similarity=0.171 Sum_probs=91.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCEECCCCCHHHHHCCEEEEECCCC-CCCCCHHHHC--CCCCCCCH
Q ss_conf 99999799987889999972578--7997469996961799994767146089917777-7787578723--97999991
Q 000521 1248 QVGIVGRTGAGKSSILNALFRLT--PICGGQILVDGLNIINTPVRDLRGRFAVVPQSPF-LFEGSLRDNL--DPFHMNDD 1322 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~rl~--~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~-lf~gTIR~NL--dp~~~~sd 1322 (1446)
.|||+|..|+|||||+-+|+..- ....|++. +|....+...++-.+.+++-+.-.. .+.| .+-|+ .|+...=-
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~ 81 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV 81 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf 999994889809999999999709755306622-221135626988873876875102222343-210688068155433
Q ss_pred HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 7799999980199999958994054149999994599999999986249988998---5667798999799999999983
Q 000521 1323 LKIWSVLEKCHVKEEVEAVGLETFVKESGISFSVGQRQLICLARALLKSSKVLCL---DECTANVDAQTASILQNAISSE 1399 (1446)
Q Consensus 1323 ~~i~~aL~~~~l~~~i~~lgLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiL---DEaTS~lD~~T~~~i~~~i~~~ 1399 (1446)
.+...++..+... -.|-+.......+-++.+-.|+. .+.|.++++ |.+ + |.. +. .+.+++.
T Consensus 82 ~e~~~al~~~D~a---------vlvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~-~--~~~--~~-l~~~~~~ 145 (267)
T d2dy1a2 82 GEIRGALEAADAA---------LVAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG-G--DYY--AL-LEDLRST 145 (267)
T ss_dssp HHHHHHHHHCSEE---------EEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC-C--CHH--HH-HHHHHHH
T ss_pred HHHHHHHCCCCCE---------EEEEECCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCC-C--CCH--HH-HHHHHHH
T ss_conf 5565431246733---------89842357742115788776554-044310133320222-2--101--23-4468887
Q ss_pred CCCCEEEEECCC----CHHHHH--CCEEEEEECCEEEEEECCCHHH
Q ss_conf 699579986069----026751--1979999497899970440012
Q 000521 1400 CKGMTVITIAHR----ISTVLN--MDEILILDHGHLVCISFICRYF 1439 (1446)
Q Consensus 1400 f~~~TvI~IaHR----l~ti~~--~D~I~vl~~G~ive~~~~~~~~ 1439 (1446)
+....-+.+-.. ...+.| ..+.+..++|.-.+.+.|..+.
T Consensus 146 lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~ 191 (267)
T d2dy1a2 146 LGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEER 191 (267)
T ss_dssp HCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGH
T ss_pred HCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHH
T ss_conf 4658676860025883268762476548996189874540777789
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.42 E-value=0.48 Score=20.62 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=66.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCCCCCCCHHHHCCCCCCCCH
Q ss_conf 74892999997999878899999725787997469996961799994767146089917777778757872397999991
Q 000521 1243 IEGGTQVGIVGRTGAGKSSILNALFRLTPICGGQILVDGLNIINTPVRDLRGRFAVVPQSPFLFEGSLRDNLDPFHMNDD 1322 (1446)
Q Consensus 1243 I~~GekvgIvGrTGSGKSTLl~~L~rl~~~~~G~I~IDG~di~~i~~~~LR~~i~~IpQdp~lf~gTIR~NLdp~~~~sd 1322 (1446)
++.+..|-|.|+.||||||+...|..-+ |-..|+.-|+ +|..+. ..+ ...-.+.+.++-+...+|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~~---~~~-~~~~~~~~~~~~~~~~~~ 69 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEVS---SGS-ARGKMLSEIMEKGQLVPL 69 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHHH---HTC-HHHHHHHHHHTTTCCCCH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCHH-------HHHHHH---HHH-HHHHHHHHHHHHCCCCCH
T ss_conf 4678289998999998799999999986----9846833478-------999998---767-651456777763137762
Q ss_pred HHHHHHHHHCCHHHHHHHC--CCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 7799999980199999958--994054149999994599999999986249988998566
Q 000521 1323 LKIWSVLEKCHVKEEVEAV--GLETFVKESGISFSVGQRQLICLARALLKSSKVLCLDEC 1380 (1446)
Q Consensus 1323 ~~i~~aL~~~~l~~~i~~l--gLdt~i~e~G~~LS~GQrQll~LARAlL~~~~ILiLDEa 1380 (1446)
+.+...+... +... .....+-++ +.....|--.+.+.+.....++.+|.+
T Consensus 70 ~~~~~~~~~~-----l~~~~~~~~g~ildg---~pr~~~qa~~~~~~~~~~~~~~~~~~~ 121 (194)
T d3adka_ 70 ETVLDMLRDA-----MVAKVDTSKGFLIDG---YPREVKQGEEFERKIGQPTLLLYVDAG 121 (194)
T ss_dssp HHHHHHHHHH-----HHTTTTTCSCEEEES---CCSSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred HEEEEEHHHH-----HHHCCCCCCCCEEEE---CCCHHHHHHHHHHHHCCCCCHHCCCCC
T ss_conf 2244102456-----640322356602431---110157899999983775200003331
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.33 E-value=0.65 Score=19.61 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++++|..|+|||||++.++++-
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~ 28 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKI 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989959899999997098
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.33 E-value=0.48 Score=20.66 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999589994789999986475
Q 000521 636 VAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 636 ~~IvG~vGSGKStLL~ailGe~ 657 (1446)
++++|+.||||||+.+.+.-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.30 E-value=0.71 Score=19.32 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHH---CCCCCCCCEE
Q ss_conf 99999799987889999972---5787997469
Q 000521 1248 QVGIVGRTGAGKSSILNALF---RLTPICGGQI 1277 (1446)
Q Consensus 1248 kvgIvGrTGSGKSTLl~~L~---rl~~~~~G~I 1277 (1446)
.|+|-||.||||||+.+.|. ++...+.|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf 899779998898999999999969908988899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=80.27 E-value=0.54 Score=20.26 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299999799987889999972578
Q 000521 1247 TQVGIVGRTGAGKSSILNALFRLT 1270 (1446)
Q Consensus 1247 ekvgIvGrTGSGKSTLl~~L~rl~ 1270 (1446)
+.|-++|..||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.05 E-value=0.73 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999589994789999986475
Q 000521 635 LVAVIGEVGSGKSSLLNSILGEM 657 (1446)
Q Consensus 635 l~~IvG~vGSGKStLL~ailGe~ 657 (1446)
-++|.||.||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|